Citrus Sinensis ID: 010592
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 506 | 2.2.26 [Sep-21-2011] | |||||||
| B9DFI7 | 616 | Probable methyltransferas | yes | no | 0.996 | 0.818 | 0.835 | 0.0 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.984 | 0.801 | 0.722 | 0.0 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.984 | 0.786 | 0.603 | 0.0 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.982 | 0.777 | 0.596 | 0.0 | |
| Q9ZPH9 | 633 | Probable methyltransferas | no | no | 1.0 | 0.799 | 0.583 | 0.0 | |
| O80844 | 631 | Probable methyltransferas | no | no | 1.0 | 0.801 | 0.565 | 0.0 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.950 | 0.787 | 0.535 | 1e-156 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.972 | 0.815 | 0.468 | 1e-137 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.978 | 0.825 | 0.453 | 1e-134 | |
| Q93W95 | 600 | Probable methyltransferas | no | no | 0.954 | 0.805 | 0.459 | 1e-130 |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/510 (83%), Positives = 472/510 (92%), Gaps = 6/510 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPR+SM YRERHC PE EKLHCLIPAPKGYVTPF WPKSRDYVPYANAPYK+LTVEKA
Sbjct: 106 MTFPRDSMIYRERHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKA 165
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEG+VFRFPGGGTQFPQGADKYIDQLASVIP++NGTVRTALDTGCGVASWGAYL
Sbjct: 166 IQNWIQYEGDVFRFPGGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYL 225
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY +RAFDMAHCSRCLIPWG
Sbjct: 226 WSRNVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWG 285
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG Y++EVDRVLRPGGYW+LSGPPINWK NYKAWQRPKE+LQEEQRKIEE A LLCWE
Sbjct: 286 ANDGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWE 345
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------E 294
KK E GEIA+WQK+VNDE+CR+R+DD RANFCK+ D DDVWYKKME CITPYP E
Sbjct: 346 KKYEHGEIAIWQKRVNDEACRSRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDE 405
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGGEL+AFP+RL A+PPRISSGSI GV+ ++Y++D+ +WKKHV AYK+IN LLD+GRYR
Sbjct: 406 VAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYR 465
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNAGFGGFAAA++S KLWVMNVVPT+A+KN LGV+YERGLIGIYHDWCEAFSTYPR
Sbjct: 466 NIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPR 525
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA+ LFSLYK+KCN +DILLEMDRILRPEGA+IIRD+VD +IKVK+I+ GMRWD
Sbjct: 526 TYDLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDA 585
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGNST 504
K+VDHEDGPLVPEK+L+AVKQYWV + ST
Sbjct: 586 KLVDHEDGPLVPEKVLIAVKQYWVTNSTST 615
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/508 (72%), Positives = 425/508 (83%), Gaps = 10/508 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
M FPRE+M YRERHCPP+ EKL CL+PAPKGY+TPFPWPKSRDYV YANAP+KSLTVEKA
Sbjct: 105 MKFPRENMIYRERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKA 164
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW+Q++GNVF+FPGGGT FPQGAD YI++LASVIPIK+G+VRTALDTGCGVASWGAY+
Sbjct: 165 GQNWVQFQGNVFKFPGGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYM 224
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
RNV+ MSFAPRD+HEAQVQFALERGVPA+I VLG+I +PY +RAFDMA CSRCLIPW
Sbjct: 225 LKRNVLTMSFAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWT 284
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
AN+G Y++EVDRVLRPGGYWVLSGPPINWKT +K W R K EL EQ++IE IA LCWE
Sbjct: 285 ANEGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWE 344
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------E 294
KK EKG+IA+++KK+ND SC + + CK D DDVWYK++E C+TP+P E
Sbjct: 345 KKYEKGDIAIFRKKINDRSCDR---STPVDTCKRKDTDDVWYKEIETCVTPFPKVSNEEE 401
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGG+LK FPERL+A+PP IS G I GV ESYQED N WKK V YK+INRL+ S RYR
Sbjct: 402 VAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRYR 461
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
N+MDMNAG GGFAAA++S K WVMNV+PT+ +KNTL V+YERGLIGIYHDWCE FSTYPR
Sbjct: 462 NVMDMNAGLGGFAAALESPKSWVMNVIPTI-NKNTLSVVYERGLIGIYHDWCEGFSTYPR 520
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYD IHA G+FSLY+ C +EDILLE DRILRPEG +I RDEVD + V+KIV GMRWDT
Sbjct: 521 TYDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDT 580
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGN 502
K++DHEDGPLVPEKILVA KQYWVA +
Sbjct: 581 KLMDHEDGPLVPEKILVATKQYWVAGDD 608
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/505 (60%), Positives = 393/505 (77%), Gaps = 7/505 (1%)
Query: 3 FPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQ 62
F R M YRERHCP ++E L+CLIP P Y PF WP+SRDY Y N P+K L+VEKA+Q
Sbjct: 115 FDRNMMKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQ 174
Query: 63 NWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS 122
NWIQ EG+ FRFPGGGT FP+GAD YID +A +IP+ +G +RTA+DTGCGVAS+GAYL
Sbjct: 175 NWIQVEGDRFRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLK 234
Query: 123 RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182
R+++A+SFAPRD+HEAQVQFALERGVPA+IG++G+ ++PY +RAFD+AHCSRCLIPW N
Sbjct: 235 RDIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKN 294
Query: 183 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 242
DG Y++EVDRVLRPGGYW+LSGPPINWK ++ W+R +E+L++EQ IE++A LCW+K
Sbjct: 295 DGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKV 354
Query: 243 SEKGEIAVWQKKVNDESCRARRDDSRA-NFCKSSDADDVWYKKMEGCITPYPEV------ 295
+EKG++++WQK +N C+ + ++++ C S +AD WYK +E CITP PE
Sbjct: 355 TEKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDS 414
Query: 296 AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRN 355
AGG L+ +P+R +A+PPRI G+IP ++AE ++ED+ WK+ + YKKI L GR+RN
Sbjct: 415 AGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGRFRN 474
Query: 356 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRT 415
IMDMNA GGFAA++ WVMNVVP A+K TLGVIYERGLIG Y DWCE FSTYPRT
Sbjct: 475 IMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRT 534
Query: 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475
YD+IHA GLFSLY+ +C++ ILLEMDRILRPEG +++RD V+ + KV+KIV GM+W ++
Sbjct: 535 YDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQ 594
Query: 476 MVDHEDGPLVPEKILVAVKQYWVAS 500
+VDHE GP PEKILVAVK YW
Sbjct: 595 IVDHEKGPFNPEKILVAVKTYWTGQ 619
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/505 (59%), Positives = 383/505 (75%), Gaps = 8/505 (1%)
Query: 3 FPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQ 62
F R M YRERHCP ++E L+CLIP P Y PF WP+SRDY Y N P+K L++EKAIQ
Sbjct: 132 FDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQ 191
Query: 63 NWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS 122
NWIQ EG FRFPGGGT FP+GAD YID +A +IP+ +G +RTA+DTGCGVAS+GAYL
Sbjct: 192 NWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLK 251
Query: 123 RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182
R+++AMSFAPRD+HEAQVQFALERGVPA+IG++G+ ++PY +RAFD+AHCSRCLIPW N
Sbjct: 252 RDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQN 311
Query: 183 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 242
DG Y+ EVDRVLRPGGYW+LSGPPINWK +K W+R +E+L++EQ IE+ A LCW+K
Sbjct: 312 DGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKV 371
Query: 243 SEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADD-VWYKKMEGCITPYPEV----- 295
+EKG++++WQK +N C + +R C SD D WYK +E C+TP PE
Sbjct: 372 TEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANSSDE 431
Query: 296 -AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
AGG L+ +P R +A+PPRI G+IP ++AE ++ED+ WK+ ++ YK+I L GR+R
Sbjct: 432 FAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMPELSRGRFR 491
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNA GGFAAA+ WVMNVVP A+K TLGVI+ERG IG Y DWCE FSTYPR
Sbjct: 492 NIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFSTYPR 551
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA GLFS+Y+++C++ ILLEMDRILRPEG ++ RD V+ + K++ I GMRW +
Sbjct: 552 TYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSITNGMRWKS 611
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVA 499
+++DHE GP PEKIL+AVK YW
Sbjct: 612 RILDHERGPFNPEKILLAVKSYWTG 636
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/516 (58%), Positives = 389/516 (75%), Gaps = 10/516 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
+ FPRE + YRERHCP + E + C IPAP GY PF WP+SRD +AN P+ LTVEK
Sbjct: 116 LNFPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKK 175
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW++YE + F FPGGGT FP+GAD YID++ +I +K+G++RTA+DTGCGVAS+GAYL
Sbjct: 176 NQNWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYL 235
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRN++ MSFAPRD+HEAQVQFALERGVPA+IGVL +I++P+ +RAFD+AHCSRCLIPWG
Sbjct: 236 MSRNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWG 295
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
+G Y+IEVDRVLRPGGYW+LSGPPINW+ ++K W+R +++L EQ +IE +A LCW
Sbjct: 296 QYNGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWR 355
Query: 241 KKSEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADDVWYKKMEGCITPYP------ 293
K ++ ++AVWQK N C R R R FC + + WY K+E C+TP P
Sbjct: 356 KLVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSE 415
Query: 294 --EVAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKIN-RLLDS 350
EVAGG+L +PERL A+PPRI SGS+ G++ + + ++ KW++ V+ YKK + +L ++
Sbjct: 416 IKEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAET 475
Query: 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS 410
GRYRN +DMNA GGFA+A+ +WVMNVVP A NTLGVIYERGLIG Y +WCEA S
Sbjct: 476 GRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMS 535
Query: 411 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM 470
TYPRTYD IHA +FSLYKD+C++EDILLEMDRILRP+G++IIRD++D + KVKKI M
Sbjct: 536 TYPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAM 595
Query: 471 RWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 506
+W+ ++ DHE+GPL EKIL VK+YW A SS
Sbjct: 596 QWEGRIGDHENGPLEREKILFLVKEYWTAPAPDQSS 631
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/523 (56%), Positives = 386/523 (73%), Gaps = 17/523 (3%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
+ F RE + YR+RHCP EE L C IPAP GY TPF WP SRD +AN P+ LTVEK
Sbjct: 107 LKFSRERLEYRQRHCPEREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKK 166
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW++YE + F FPGGGT FP+GAD YID + +I + +G++RTA+DTGCGVAS+GAYL
Sbjct: 167 NQNWVRYENDRFWFPGGGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYL 226
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRN+ MSFAPRD+HEAQVQFALERGVPA+IG++ TI++PY SRAFD+AHCSRCLIPWG
Sbjct: 227 LSRNITTMSFAPRDTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWG 286
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
NDG Y++EVDRVLRPGGYW+LSGPPINW+ +K W+R ++L EQ +IE++A LCW+
Sbjct: 287 QNDGAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWK 346
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSR-ANFCK-SSDADDVWYKKMEGCITPYPE---- 294
K ++ ++A+WQK N C+ R+ + FC+ D D WY KM+ C+TP PE
Sbjct: 347 KVVQRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDA 406
Query: 295 -----VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKIN-RLL 348
VAGG+++ +P RL AIPPR++ G++ ++ E++ E++ WK+ V+ YKK++ +L
Sbjct: 407 EDLKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLG 466
Query: 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA 408
++GRYRN++DMNA GGFAAA+ +WVMNVVP A NTLGVIYERGLIG Y +WCEA
Sbjct: 467 ETGRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEA 526
Query: 409 FSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG 468
STYPRTYD IHA +F+LY+ +C E+ILLEMDRILRP G +IIRD+VD +IKVK++
Sbjct: 527 MSTYPRTYDFIHADSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTK 586
Query: 469 GMRWDTKMVDHEDGPLVPEKILVAVKQYWVASG-----NSTSS 506
G+ W+ ++ DHE GP EKI AVKQYW N+TS+
Sbjct: 587 GLEWEGRIADHEKGPHEREKIYYAVKQYWTVPAPDEDKNNTSA 629
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/487 (53%), Positives = 336/487 (68%), Gaps = 6/487 (1%)
Query: 11 RERHCPP-EEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEG 69
RERHCP +EK CL+P P GY TPFPWP+SR Y + N P+K L K QNW++ EG
Sbjct: 121 RERHCPDIAQEKFRCLVPKPTGYKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEG 180
Query: 70 NVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMS 129
+ F FPGGGT FP G Y+D + SV+P+ +G++RT LD GCGVAS+GA+L + ++ MS
Sbjct: 181 DRFVFPGGGTSFPGGVKDYVDVILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMS 240
Query: 130 FAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIE 189
APRD HEAQVQFALERG+PA++GVL T K+PY SR+FDM HCSRCL+ W + DG Y++E
Sbjct: 241 IAPRDIHEAQVQFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLME 300
Query: 190 VDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIA 249
VDRVLRP GYWVLSGPP+ + +K +R +ELQ + K+ ++ LCWEK +E +
Sbjct: 301 VDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVV 360
Query: 250 VWQKKVNDESCRARRDDSR-ANFCKSSDADDVWYKKMEGCITPYPEVAGGE---LKAFPE 305
+W+K N CR R + C SSD D WYK+ME CITP P+V LK +PE
Sbjct: 361 IWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAWYKEMEPCITPLPDVNDTNKTVLKNWPE 420
Query: 306 RLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG 365
RL + PR+ +GSI G + ++ D+N W++ V Y + L +G+YRN++DMNAG GG
Sbjct: 421 RLNHV-PRMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKFLSNGKYRNVIDMNAGLGG 479
Query: 366 FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLF 425
FAAA+ +WVMNVVP NTLGV+Y+RGLIG Y +WCEA STYPRTYDLIHA+G+F
Sbjct: 480 FAAALIKYPMWVMNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVF 539
Query: 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLV 485
SLY DKC+I DILLEM RILRPEGA+IIRD D ++KVK I MRW+ M ++
Sbjct: 540 SLYLDKCDIVDILLEMQRILRPEGAVIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFD 599
Query: 486 PEKILVA 492
IL+
Sbjct: 600 HGTILIV 606
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/506 (46%), Positives = 337/506 (66%), Gaps = 14/506 (2%)
Query: 8 MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQY 67
+++ ERHCPP EK CLIP P GY P WPKSR+ Y N PY + +K+ Q+W++
Sbjct: 103 LSFLERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKK 162
Query: 68 EGNVFRFPGGGTQFPQGADKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRNVI 126
EG+ F FPGGGT FP+G Y+D + +IP +K+GTVRTA+DTGCGVASWG L R ++
Sbjct: 163 EGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGIL 222
Query: 127 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRY 186
++S APRD+HEAQVQFALERG+PA++G++ T ++P+ S AFDMAHCSRCLIPW G Y
Sbjct: 223 SLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIY 282
Query: 187 MIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246
++E+ R++RPGG+WVLSGPP+N+ ++ W E+ + + K++ + +C++K ++K
Sbjct: 283 LLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKD 342
Query: 247 EIAVWQKKVNDESCR---ARRDDSRANFCKSS-DADDVWYKKMEGCIT-PYPEVAG---G 298
+IAVWQ K++D+SC A+ ++ C S + D WY + C+ P P+V G
Sbjct: 343 DIAVWQ-KLSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKVKKSGLG 401
Query: 299 ELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMD 358
+ +PERL+ P RI G + G SA S + D KWK V YKK+ L + + RN+MD
Sbjct: 402 SIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALGTDKIRNVMD 459
Query: 359 MNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDL 418
MN +GGF+AA+ +WVMNVV + + N+L V+++RGLIG YHDWCEAFSTYPRTYDL
Sbjct: 460 MNTVYGGFSAALIEDPIWVMNVVSSYS-ANSLPVVFDRGLIGTYHDWCEAFSTYPRTYDL 518
Query: 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478
+H LF+L +C ++ ILLEMDRILRP G +IIR+ + + + G+RW + +
Sbjct: 519 LHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLAKGIRWSCRREE 578
Query: 479 HEDGPLVPEKILVAVKQYWVASGNST 504
E + EKILV K+ W +S ++
Sbjct: 579 TEYA-VKSEKILVCQKKLWFSSNQTS 603
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/507 (45%), Positives = 328/507 (64%), Gaps = 12/507 (2%)
Query: 8 MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQY 67
+ + ERHCPP ++ CL+P P GY P WPKS+D Y N PY + +K+ QNW++
Sbjct: 97 LTFMERHCPPVFDRKQCLVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRK 156
Query: 68 EGNVFRFPGGGTQFPQGADKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRNVI 126
EG F FPGGGT FP G Y+D + +IP +K+GT+RTA+DTGCGVASWG L R ++
Sbjct: 157 EGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGIL 216
Query: 127 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRY 186
+S APRD+HEAQVQFALERG+PA++G++ T ++P+ S +FDMAHCSRCLIPW G Y
Sbjct: 217 TVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVY 276
Query: 187 MIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246
++EV R+LRPGG+WVLSGPP+N++ +K W EE + K++E+ + +C++ ++K
Sbjct: 277 LLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKD 336
Query: 247 EIAVWQKKVNDESCRARRDDSRANFCKSSDA---DDVWYKKMEGC-ITPYPEVAGGELKA 302
+IAVWQK ++ +D A K D+ D WY + C + P P++ +L++
Sbjct: 337 DIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKLKKTDLES 396
Query: 303 ---FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDM 359
+PERL+ P RIS +PG + ++ D +KWK YKK+ + S + RN+MDM
Sbjct: 397 TPKWPERLHTTPERIS--DVPGGNGNVFKHDDSKWKTRAKHYKKLLPAIGSDKIRNVMDM 454
Query: 360 NAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLI 419
N +GG AAA+ + LWVMNVV + A NTL V+++RGLIG YHDWCEAFSTYPRTYDL+
Sbjct: 455 NTAYGGLAAALVNDPLWVMNVVSSYA-ANTLPVVFDRGLIGTYHDWCEAFSTYPRTYDLL 513
Query: 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDH 479
H GLF+ +C+++ ++LEMDRILRP G IIR+ + + +RW +
Sbjct: 514 HVDGLFTSESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAKELRWSCRKEQT 573
Query: 480 EDGPLVPEKILVAVKQYWVASGNSTSS 506
E EK+L+ K+ W +S S+ +
Sbjct: 574 ESAS-ANEKLLICQKKLWYSSNASSET 599
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/511 (45%), Positives = 317/511 (62%), Gaps = 28/511 (5%)
Query: 5 RESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNW 64
RE YRERHCP EE CLIP P GY P PWP+S + +AN PY + K Q W
Sbjct: 105 REMNFYRERHCPLPEETPLCLIPPPSGYKIPVPWPESLHKIWHANMPYNKIADRKGHQGW 164
Query: 65 IQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN 124
++ EG F FPGGGT FP GA +YI++LA IP+ GT+RTALD GCGVAS+G L S+
Sbjct: 165 MKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQG 224
Query: 125 VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDG 184
++A+SFAPRDSH++Q+QFALERGVPA + +LGT ++P+ + +FD+ HCSRCLIP+ A +
Sbjct: 225 ILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNA 284
Query: 185 RYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSE 244
Y IEVDR+LRPGGY V+SGPP+ W K W ++ +A LC+E +
Sbjct: 285 TYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWA-----------DLQAVARALCYELIAV 333
Query: 245 KGEIAVWQKKVNDESCRARRDDSRANFC-KSSDADDVWYKKMEGCITPYPEVAG----GE 299
G +W+K V D SC +++ C +S D WY K++ C+T V G G
Sbjct: 334 DGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALGT 392
Query: 300 LKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYK-KINRLLDSGRYRNIMD 358
+ +PERL +P R + + ++ D+ +W + V Y+ +N L S RN+MD
Sbjct: 393 ISKWPERLTKVPSR---AIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMD 449
Query: 359 MNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDL 418
MNA FGGFAA + S +WVMNV+P TL VIY+RGLIG+YHDWCE FSTYPRTYD
Sbjct: 450 MNAFFGGFAATLASDPVWVMNVIPA-RKPLTLDVIYDRGLIGVYHDWCEPFSTYPRTYDF 508
Query: 419 IHAHGLFSLY------KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRW 472
IH G+ SL K +C++ D+++EMDRILRPEG ++IRD + + KV ++ +RW
Sbjct: 509 IHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRW 568
Query: 473 DTKMVDHEDGPLVPEKILVAVKQYWVASGNS 503
+ + + E EKIL+A K W NS
Sbjct: 569 SSSIHEKEPESHGREKILIATKSLWKLPSNS 599
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 506 | ||||||
| 6752888 | 608 | unknown [Malus x domestica] | 0.996 | 0.828 | 0.867 | 0.0 | |
| 357516137 | 610 | hypothetical protein MTR_8g055840 [Medic | 1.0 | 0.829 | 0.859 | 0.0 | |
| 357516139 | 507 | hypothetical protein MTR_8g055840 [Medic | 1.0 | 0.998 | 0.859 | 0.0 | |
| 217074996 | 610 | unknown [Medicago truncatula] | 1.0 | 0.829 | 0.857 | 0.0 | |
| 356567513 | 608 | PREDICTED: probable methyltransferase PM | 0.996 | 0.828 | 0.863 | 0.0 | |
| 356498262 | 607 | PREDICTED: probable methyltransferase PM | 0.994 | 0.828 | 0.871 | 0.0 | |
| 356499801 | 607 | PREDICTED: probable methyltransferase PM | 0.994 | 0.828 | 0.865 | 0.0 | |
| 224099725 | 615 | predicted protein [Populus trichocarpa] | 0.996 | 0.819 | 0.845 | 0.0 | |
| 356526918 | 608 | PREDICTED: probable methyltransferase PM | 0.996 | 0.828 | 0.857 | 0.0 | |
| 224111282 | 617 | predicted protein [Populus trichocarpa] | 1.0 | 0.820 | 0.837 | 0.0 |
| >gi|6752888|gb|AAF27920.1|AF220204_1 unknown [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/506 (86%), Positives = 478/506 (94%), Gaps = 2/506 (0%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPREDMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
+QNWIQYEGNVFRFPGGGTQFPQGADKYIDQLA+VIPIKNGTVRTALDTGCGVASWGAYL
Sbjct: 164 VQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLAAVIPIKNGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRNV+AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY SRAFDMAHCSRCLIPWG
Sbjct: 224 LSRNVLAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
NDG+Y+ EVDRVLRPGGYWVLSGPPINWK NY+AWQRPKE+LQEEQR+IEE A LLCWE
Sbjct: 284 INDGKYLKEVDRVLRPGGYWVLSGPPINWKNNYQAWQRPKEDLQEEQRQIEEAAKLLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSEKGE A+WQK+V+ +SC R+DDSRANFCK+ +AD VWYKKMEGCITPYP+V+ GEL
Sbjct: 344 KKSEKGETAIWQKRVDSDSCGDRQDDSRANFCKADEADSVWYKKMEGCITPYPKVSSGEL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP+RLYA+PPRISSGS+PGVS E Y+ED+NKWKKHVNAYK+IN+L+D+GRYRNIMDMN
Sbjct: 404 KPFPKRLYAVPPRISSGSVPGVSVEDYEEDNNKWKKHVNAYKRINKLIDTGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG GGFAAAI+S KLWVMNV+PT+A+KNTLGV+YERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 464 AGLGGFAAAIESPKLWVMNVMPTIAEKNTLGVVYERGLIGIYHDWCEGFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
AHG+FS+Y KCN EDILLEMDRILRPEGA+I RDEVD +IKVKKIVGGMRWDTK+VDHE
Sbjct: 524 AHGVFSMYNGKCNWEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKLVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNSTSS 506
DGPLVPEK+LVAVKQYWV GNSTS+
Sbjct: 584 DGPLVPEKVLVAVKQYWV--GNSTSA 607
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357516137|ref|XP_003628357.1| hypothetical protein MTR_8g055840 [Medicago truncatula] gi|355522379|gb|AET02833.1| hypothetical protein MTR_8g055840 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/506 (85%), Positives = 473/506 (93%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI +GTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPINDGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV+AMSFAPRDSHEAQVQFALERGVPAVIGV GTIK+PY SRAFDMAHCSRCLIPWG
Sbjct: 224 WSRNVVAMSFAPRDSHEAQVQFALERGVPAVIGVFGTIKLPYPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A LCWE
Sbjct: 284 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSEK EIA+WQK + ESCR+R+DDS FC+SSD DDVWYKK++ C+TP P+V+GG+L
Sbjct: 344 KKSEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP+RLYAIPPR+SSGSIPGVS+E+YQ D+ WKKHVNAYKKIN LLDSGRYRNIMDMN
Sbjct: 404 KPFPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 464 AGLGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
A+GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHE
Sbjct: 524 ANGLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNSTSS 506
DGPLVPEK+L+AVKQYWV GNSTS+
Sbjct: 584 DGPLVPEKVLIAVKQYWVTDGNSTST 609
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357516139|ref|XP_003628358.1| hypothetical protein MTR_8g055840 [Medicago truncatula] gi|355522380|gb|AET02834.1| hypothetical protein MTR_8g055840 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/506 (85%), Positives = 473/506 (93%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 1 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI +GTVRTALDTGCGVASWGAYL
Sbjct: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPINDGTVRTALDTGCGVASWGAYL 120
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV+AMSFAPRDSHEAQVQFALERGVPAVIGV GTIK+PY SRAFDMAHCSRCLIPWG
Sbjct: 121 WSRNVVAMSFAPRDSHEAQVQFALERGVPAVIGVFGTIKLPYPSRAFDMAHCSRCLIPWG 180
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A LCWE
Sbjct: 181 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWE 240
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSEK EIA+WQK + ESCR+R+DDS FC+SSD DDVWYKK++ C+TP P+V+GG+L
Sbjct: 241 KKSEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDL 300
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP+RLYAIPPR+SSGSIPGVS+E+YQ D+ WKKHVNAYKKIN LLDSGRYRNIMDMN
Sbjct: 301 KPFPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMN 360
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 361 AGLGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIH 420
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
A+GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHE
Sbjct: 421 ANGLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHE 480
Query: 481 DGPLVPEKILVAVKQYWVASGNSTSS 506
DGPLVPEK+L+AVKQYWV GNSTS+
Sbjct: 481 DGPLVPEKVLIAVKQYWVTDGNSTST 506
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217074996|gb|ACJ85858.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/506 (85%), Positives = 472/506 (93%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI +GTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPINDGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV+AMSFAPRDSHEAQVQFALERGVPAVIGV GTIK+P SRAFDMAHCSRCLIPWG
Sbjct: 224 WSRNVVAMSFAPRDSHEAQVQFALERGVPAVIGVFGTIKLPNPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A LCWE
Sbjct: 284 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSEK EIA+WQK + ESCR+R+DDS FC+SSD DDVWYKK++ C+TP P+V+GG+L
Sbjct: 344 KKSEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP+RLYAIPPR+SSGSIPGVS+E+YQ D+ WKKHVNAYKKIN LLDSGRYRNIMDMN
Sbjct: 404 KPFPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 464 AGLGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
A+GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHE
Sbjct: 524 ANGLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNSTSS 506
DGPLVPEK+L+AVKQYWV GNSTS+
Sbjct: 584 DGPLVPEKVLIAVKQYWVTDGNSTST 609
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567513|ref|XP_003551963.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/504 (86%), Positives = 469/504 (93%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+M YRERHCPPEEEKL C+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMVYRERHCPPEEEKLRCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVF+FPGGGTQFPQGADKYIDQ+ASVIPI NGTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFKFPGGGTQFPQGADKYIDQIASVIPITNGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV+AMSFAPRD+HEAQVQFALERGVPA+IGVLG+IK+PY SRAFDMAHCSRCLIPWG
Sbjct: 224 WSRNVVAMSFAPRDNHEAQVQFALERGVPAIIGVLGSIKLPYPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
AN+G YM+EVDRVLRPGGYWVLSGPPINWK NYK+W RPKEEL+EEQRKIEEIA LCWE
Sbjct: 284 ANNGIYMMEVDRVLRPGGYWVLSGPPINWKANYKSWLRPKEELEEEQRKIEEIAKQLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
K+SEK E+A+WQK V+ ESCR R+DDS FC+SSDADDVWYKKME CITP P+V GG L
Sbjct: 344 KRSEKAEMAIWQKVVDSESCRRRQDDSSVEFCQSSDADDVWYKKMETCITPTPKVTGGNL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP RLYAIPPRI+SGS+PGVS+E+YQ+D+ KWKKHVNAYKK NRLLDSGRYRNIMDMN
Sbjct: 404 KPFPSRLYAIPPRIASGSVPGVSSETYQDDNKKWKKHVNAYKKTNRLLDSGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
+G G FAAAI SS LWVMNVVPT+A+ NTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH
Sbjct: 464 SGLGSFAAAIHSSNLWVMNVVPTIAEMNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
AHG+FSLYKDKCN EDILLEMDRILRPEGA+I RDEVD +IKVKKIVGGMRWDTKMVDHE
Sbjct: 524 AHGVFSLYKDKCNAEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKMVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNST 504
DGPLVPEK+LVAVKQYWV + ST
Sbjct: 584 DGPLVPEKVLVAVKQYWVTNSTST 607
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498262|ref|XP_003517972.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/504 (87%), Positives = 472/504 (93%), Gaps = 1/504 (0%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGAD+YIDQLASVIPIK+GTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFRFPGGGTQFPQGADRYIDQLASVIPIKDGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY S AFDMAHCSRCLIPWG
Sbjct: 224 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSAAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYKAWQR KE+L+EEQRKIEE A LLCWE
Sbjct: 284 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKAWQRSKEDLEEEQRKIEETAKLLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSE EIA+WQK V+ ESCR+R++DS FC+S+DA+DVWYKKME CITP P+V G+
Sbjct: 344 KKSENSEIAIWQKTVDTESCRSRQEDSSVKFCESTDANDVWYKKMEVCITPSPKVY-GDY 402
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FPERLYAIPPRI+SGS+PGVS E+YQEDS KWKKHVNAYKKINRLLD+GRYRNIMDMN
Sbjct: 403 KPFPERLYAIPPRIASGSVPGVSVETYQEDSKKWKKHVNAYKKINRLLDTGRYRNIMDMN 462
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAA IQSSKLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH
Sbjct: 463 AGLGSFAADIQSSKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 522
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
+ LFSLYKDKC+ EDILLEMDRILRPEGA+IIRDEVD +IKVKK+V GMRWDTKMVDHE
Sbjct: 523 SDSLFSLYKDKCDTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLVEGMRWDTKMVDHE 582
Query: 481 DGPLVPEKILVAVKQYWVASGNST 504
DGPLVPEK+L+AVKQYWVA+ ST
Sbjct: 583 DGPLVPEKVLIAVKQYWVANATST 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499801|ref|XP_003518725.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/504 (86%), Positives = 474/504 (94%), Gaps = 1/504 (0%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGAD+YIDQLASVIPIK+GTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFRFPGGGTQFPQGADRYIDQLASVIPIKDGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY S AFDMAHCSRCLIPWG
Sbjct: 224 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSAAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYKAWQRPKE+L+EEQRKIEE A LLCWE
Sbjct: 284 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKINYKAWQRPKEDLEEEQRKIEETAKLLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSE EIA+WQK ++ ESCR+R+++S FC+S+DA+DVWYKKME C+TP P+V+ G+
Sbjct: 344 KKSENSEIAIWQKTLDTESCRSRQEESSVKFCESTDANDVWYKKMEVCVTPSPKVS-GDY 402
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FPERLYAIPPRI+SGS+PGVS E+YQED+ KWKKHVNAYKKINRLLD+GRYRNIMDMN
Sbjct: 403 KPFPERLYAIPPRIASGSVPGVSVETYQEDNKKWKKHVNAYKKINRLLDTGRYRNIMDMN 462
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAIQSSKLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 463 AGLGSFAAAIQSSKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIH 522
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
+ LFSLYKDKC+ EDILLEMDRILRPEGA+IIRDEVD +IKVKK+V GMRW+TKMVDHE
Sbjct: 523 SDSLFSLYKDKCDTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLVEGMRWNTKMVDHE 582
Query: 481 DGPLVPEKILVAVKQYWVASGNST 504
DGPLVPEKIL+AVKQYWVA+ ST
Sbjct: 583 DGPLVPEKILIAVKQYWVANATST 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099725|ref|XP_002311593.1| predicted protein [Populus trichocarpa] gi|222851413|gb|EEE88960.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/512 (84%), Positives = 478/512 (93%), Gaps = 8/512 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+M YRERHCPP+EEKLHCLIPAP+GYVTPFPWPKSRDYVP+ANAPYKSLTVEKA
Sbjct: 105 MTFPRENMIYRERHCPPQEEKLHCLIPAPQGYVTPFPWPKSRDYVPFANAPYKSLTVEKA 164
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNW+QYEGNVFRFPGGGTQFPQGADKYIDQLASV+P NGTVRTALDTGCGVAS GAYL
Sbjct: 165 IQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVLPFTNGTVRTALDTGCGVASLGAYL 224
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVI MSFAPRDSHEAQVQFALERGVPAVIGV G++K+PY S+AFDMAHCSRCLIPWG
Sbjct: 225 WSRNVITMSFAPRDSHEAQVQFALERGVPAVIGVFGSVKLPYPSKAFDMAHCSRCLIPWG 284
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG Y++EVDRVLRPGGYWVLSGPPINWK NYK+WQRPKEELQEEQRKIEE A LLCW+
Sbjct: 285 ANDGMYLMEVDRVLRPGGYWVLSGPPINWKNNYKSWQRPKEELQEEQRKIEETAKLLCWD 344
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------E 294
KK EKGE+A+WQK+VN +SCRAR+DDSRA FCKS+D DDVWYKKME CITPY E
Sbjct: 345 KKYEKGEMAIWQKRVNADSCRARQDDSRATFCKSADVDDVWYKKMEACITPYSDSGSSDE 404
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGG LK FPERLYAIPPR++SGSIPGVS E+YQ+ +N+WKKHVNAYKKIN+L+DSGRYR
Sbjct: 405 VAGGALKVFPERLYAIPPRVASGSIPGVSVETYQDYNNEWKKHVNAYKKINKLIDSGRYR 464
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNAG GGFAAA++S KLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE+FSTYPR
Sbjct: 465 NIMDMNAGLGGFAAALESPKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCESFSTYPR 524
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA G+FSLY+DKC++EDILLEMDRILRPEGA+I RDEVD ++KV+K+VGGM+WDT
Sbjct: 525 TYDLIHASGVFSLYRDKCDMEDILLEMDRILRPEGAVIFRDEVDVLVKVRKMVGGMKWDT 584
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 506
KMVDHEDGPLVPEKILVAVKQYWV GNSTS+
Sbjct: 585 KMVDHEDGPLVPEKILVAVKQYWV--GNSTSA 614
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526918|ref|XP_003532062.1| PREDICTED: probable methyltransferase PMT2-like isoform 1 [Glycine max] gi|356526920|ref|XP_003532063.1| PREDICTED: probable methyltransferase PMT2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/504 (85%), Positives = 466/504 (92%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+M YRERHCPPEEEKL C+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMVYRERHCPPEEEKLQCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVF+FPGGGTQFPQGADKYIDQ+ASVIPI NGTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFKFPGGGTQFPQGADKYIDQIASVIPITNGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVIAMSFAPRD+HEAQVQFALERGVPA++GVLG+IK+PY SRAFDMAHCSRCLIPWG
Sbjct: 224 WSRNVIAMSFAPRDNHEAQVQFALERGVPAIVGVLGSIKLPYPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
AN+G YM+EVDRVLRPGGYWVLSGPPINWK NYK+W RPKEEL+EEQRKIEE A LCWE
Sbjct: 284 ANNGIYMMEVDRVLRPGGYWVLSGPPINWKANYKSWLRPKEELEEEQRKIEETAKQLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
K+SEK E+A+WQK V+ ESC+ R+DDS FC+SSDADDVWYKKME CITP P+V GG L
Sbjct: 344 KRSEKAEMAIWQKVVDSESCQRRKDDSSVEFCESSDADDVWYKKMEACITPTPKVTGGNL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP RLYAIPPRI+SG +PGVS+E+YQ+D+ KWKKHV AYKK NRLLDSGRYRNIMDMN
Sbjct: 404 KPFPSRLYAIPPRIASGLVPGVSSETYQDDNKKWKKHVKAYKKTNRLLDSGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAI SSKLWVMNVVPT+A+ NTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH
Sbjct: 464 AGLGSFAAAIHSSKLWVMNVVPTIAEANTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
AHG+FSLYKDKC EDILLEMDRILRPEGA+I RDEVD +IKVKKIVGGMRWDTKMVDHE
Sbjct: 524 AHGVFSLYKDKCKAEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKMVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNST 504
DGPLVPEK+LVAVKQYWV + ST
Sbjct: 584 DGPLVPEKVLVAVKQYWVTNSTST 607
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111282|ref|XP_002315803.1| predicted protein [Populus trichocarpa] gi|222864843|gb|EEF01974.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/512 (83%), Positives = 476/512 (92%), Gaps = 6/512 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPR++M YRERHCPP++EKLHCLIPAPKGYVTPFPWPKSRDYVP+ANAPYKSLTVEKA
Sbjct: 105 MTFPRDNMIYRERHCPPQQEKLHCLIPAPKGYVTPFPWPKSRDYVPFANAPYKSLTVEKA 164
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNW+QYEGNVFRFPGGGTQFPQGADKYIDQLASV+PI NGTVRTALDTGCGVAS GAYL
Sbjct: 165 IQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVLPIANGTVRTALDTGCGVASLGAYL 224
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGV GT+K+PY SRAFDMAHCSRCLIPWG
Sbjct: 225 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVFGTVKLPYPSRAFDMAHCSRCLIPWG 284
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG Y++EVDRVLRPGGYWVLSGPPINWK NY++WQRPKEELQEEQRKIEE A LLCW+
Sbjct: 285 ANDGMYLMEVDRVLRPGGYWVLSGPPINWKNNYRSWQRPKEELQEEQRKIEETAKLLCWD 344
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------E 294
KK E GE+A+WQK++N +SCR R+DDSRA CKS+D DD WYK+ME C+TPYP E
Sbjct: 345 KKYENGEMAIWQKRLNADSCRGRQDDSRATLCKSTDTDDAWYKQMEACVTPYPDSGSSDE 404
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGG+LK FPERLYA+PPR++SGS+PGVSA++YQ + +WKKHVNAYKKIN+LLDSGRYR
Sbjct: 405 VAGGQLKVFPERLYAVPPRVASGSVPGVSAKTYQVYNKEWKKHVNAYKKINKLLDSGRYR 464
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNAG GGFAAA++S KLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCEAFSTYPR
Sbjct: 465 NIMDMNAGMGGFAAALESPKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEAFSTYPR 524
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA G+FSLYKD+CN+EDILLEMDRILRPEGA+I RDEV+ +IKV+K+VG MRW T
Sbjct: 525 TYDLIHASGVFSLYKDRCNMEDILLEMDRILRPEGAVIFRDEVNVLIKVRKMVGQMRWHT 584
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 506
KMVDHEDGPLVPEKILVAVKQYWVA GNSTS+
Sbjct: 585 KMVDHEDGPLVPEKILVAVKQYWVAGGNSTST 616
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 506 | ||||||
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.996 | 0.818 | 0.811 | 1.3e-240 | |
| TAIR|locus:2141035 | 621 | AT4G18030 [Arabidopsis thalian | 0.990 | 0.806 | 0.706 | 2.3e-206 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.978 | 0.781 | 0.595 | 4.3e-173 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.978 | 0.774 | 0.586 | 4.9e-172 | |
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 1.0 | 0.799 | 0.571 | 2e-168 | |
| TAIR|locus:2050679 | 631 | AT2G45750 [Arabidopsis thalian | 0.982 | 0.787 | 0.565 | 1e-164 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.948 | 0.785 | 0.528 | 2.4e-140 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.972 | 0.815 | 0.471 | 2.5e-129 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.976 | 0.823 | 0.448 | 1.6e-125 | |
| TAIR|locus:2117733 | 600 | QUA3 "QUASIMODO 3" [Arabidopsi | 0.952 | 0.803 | 0.462 | 5.8e-121 |
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2319 (821.4 bits), Expect = 1.3e-240, P = 1.3e-240
Identities = 414/510 (81%), Positives = 459/510 (90%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPR+SM YRERHC PE EKLHCLIPAPKGYVTPF WPKSRDYVPYANAPYK+LTVEKA
Sbjct: 106 MTFPRDSMIYRERHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKA 165
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEG+VFRFPGGGTQFPQGADKYIDQLASVIP++NGTVRTALDTGCGVASWGAYL
Sbjct: 166 IQNWIQYEGDVFRFPGGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYL 225
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY +RAFDMAHCSRCLIPWG
Sbjct: 226 WSRNVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWG 285
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWE 240
ANDG Y++EVDRVLRPGGYW+LSGPPINWK NYKAWQRP A LLCWE
Sbjct: 286 ANDGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWE 345
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPE------ 294
KK E GEIA+WQK+VNDE+CR+R+DD RANFCK+ D DDVWYKKME CITPYPE
Sbjct: 346 KKYEHGEIAIWQKRVNDEACRSRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDE 405
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGGEL+AFP+RL A+PPRISSGSI GV+ ++Y++D+ +WKKHV AYK+IN LLD+GRYR
Sbjct: 406 VAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYR 465
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNAGFGGFAAA++S KLWVMNVVPT+A+KN LGV+YERGLIGIYHDWCEAFSTYPR
Sbjct: 466 NIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPR 525
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA+ LFSLYK+KCN +DILLEMDRILRPEGA+IIRD+VD +IKVK+I+ GMRWD
Sbjct: 526 TYDLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDA 585
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGNST 504
K+VDHEDGPLVPEK+L+AVKQYWV + ST
Sbjct: 586 KLVDHEDGPLVPEKVLIAVKQYWVTNSTST 615
|
|
| TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1996 (707.7 bits), Expect = 2.3e-206, P = 2.3e-206
Identities = 364/515 (70%), Positives = 421/515 (81%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
M FPRE+M YRERHCPP+ EKL CL+PAPKGY+TPFPWPKSRDYV YANAP+KSLTVEKA
Sbjct: 105 MKFPRENMIYRERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKA 164
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW+Q++GNVF+FPGGGT FPQGAD YI++LASVIPIK+G+VRTALDTGCGVASWGAY+
Sbjct: 165 GQNWVQFQGNVFKFPGGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYM 224
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
RNV+ MSFAPRD+HEAQVQFALERGVPA+I VLG+I +PY +RAFDMA CSRCLIPW
Sbjct: 225 LKRNVLTMSFAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWT 284
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWE 240
AN+G Y++EVDRVLRPGGYWVLSGPPINWKT +K W R A LCWE
Sbjct: 285 ANEGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWE 344
Query: 241 KKSEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADDVWYKKMEGCITPYP------ 293
KK EKG+IA+++KK+ND SC R+ D+ CK D DDVWYK++E C+TP+P
Sbjct: 345 KKYEKGDIAIFRKKINDRSCDRSTPVDT----CKRKDTDDVWYKEIETCVTPFPKVSNEE 400
Query: 294 EVAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRY 353
EVAGG+LK FPERL+A+PP IS G I GV ESYQED N WKK V YK+INRL+ S RY
Sbjct: 401 EVAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRY 460
Query: 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP 413
RN+MDMNAG GGFAAA++S K WVMNV+PT+ +KNTL V+YERGLIGIYHDWCE FSTYP
Sbjct: 461 RNVMDMNAGLGGFAAALESPKSWVMNVIPTI-NKNTLSVVYERGLIGIYHDWCEGFSTYP 519
Query: 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD 473
RTYD IHA G+FSLY+ C +EDILLE DRILRPEG +I RDEVD + V+KIV GMRWD
Sbjct: 520 RTYDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWD 579
Query: 474 TKMVDHEDGPLVPEKILVAVKQYWVAS--GNSTSS 506
TK++DHEDGPLVPEKILVA KQYWVA GN++ S
Sbjct: 580 TKLMDHEDGPLVPEKILVATKQYWVAGDDGNNSPS 614
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1682 (597.2 bits), Expect = 4.3e-173, P = 4.3e-173
Identities = 299/502 (59%), Positives = 381/502 (75%)
Query: 3 FPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQ 62
F R M YRERHCP ++E L+CLIP P Y PF WP+SRDY Y N P+K L+VEKA+Q
Sbjct: 115 FDRNMMKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQ 174
Query: 63 NWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS 122
NWIQ EG+ FRFPGGGT FP+GAD YID +A +IP+ +G +RTA+DTGCGVAS+GAYL
Sbjct: 175 NWIQVEGDRFRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLK 234
Query: 123 RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182
R+++A+SFAPRD+HEAQVQFALERGVPA+IG++G+ ++PY +RAFD+AHCSRCLIPW N
Sbjct: 235 RDIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKN 294
Query: 183 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 242
DG Y++EVDRVLRPGGYW+LSGPPINWK ++ W+R A LCW+K
Sbjct: 295 DGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKV 354
Query: 243 SEKGEIAVWQKKVNDESCRARRDDSRAN-FCKSSDADDVWYKKMEGCITPYPEV------ 295
+EKG++++WQK +N C+ + ++++ C S +AD WYK +E CITP PE
Sbjct: 355 TEKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDS 414
Query: 296 AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRN 355
AGG L+ +P+R +A+PPRI G+IP ++AE ++ED+ WK+ + YKKI L GR+RN
Sbjct: 415 AGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGRFRN 474
Query: 356 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRT 415
IMDMNA GGFAA++ WVMNVVP A+K TLGVIYERGLIG Y DWCE FSTYPRT
Sbjct: 475 IMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRT 534
Query: 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475
YD+IHA GLFSLY+ +C++ ILLEMDRILRPEG +++RD V+ + KV+KIV GM+W ++
Sbjct: 535 YDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQ 594
Query: 476 MVDHEDGPLVPEKILVAVKQYW 497
+VDHE GP PEKILVAVK YW
Sbjct: 595 IVDHEKGPFNPEKILVAVKTYW 616
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
Identities = 295/503 (58%), Positives = 372/503 (73%)
Query: 3 FPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQ 62
F R M YRERHCP ++E L+CLIP P Y PF WP+SRDY Y N P+K L++EKAIQ
Sbjct: 132 FDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQ 191
Query: 63 NWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS 122
NWIQ EG FRFPGGGT FP+GAD YID +A +IP+ +G +RTA+DTGCGVAS+GAYL
Sbjct: 192 NWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLK 251
Query: 123 RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182
R+++AMSFAPRD+HEAQVQFALERGVPA+IG++G+ ++PY +RAFD+AHCSRCLIPW N
Sbjct: 252 RDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQN 311
Query: 183 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 242
DG Y+ EVDRVLRPGGYW+LSGPPINWK +K W+R A LCW+K
Sbjct: 312 DGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKV 371
Query: 243 SEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADD-VWYKKMEGCITPYPEV----- 295
+EKG++++WQK +N C + +R C SD D WYK +E C+TP PE
Sbjct: 372 TEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANSSDE 431
Query: 296 -AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
AGG L+ +P R +A+PPRI G+IP ++AE ++ED+ WK+ ++ YK+I L GR+R
Sbjct: 432 FAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMPELSRGRFR 491
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNA GGFAAA+ WVMNVVP A+K TLGVI+ERG IG Y DWCE FSTYPR
Sbjct: 492 NIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFSTYPR 551
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA GLFS+Y+++C++ ILLEMDRILRPEG ++ RD V+ + K++ I GMRW +
Sbjct: 552 TYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSITNGMRWKS 611
Query: 475 KMVDHEDGPLVPEKILVAVKQYW 497
+++DHE GP PEKIL+AVK YW
Sbjct: 612 RILDHERGPFNPEKILLAVKSYW 634
|
|
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
Identities = 295/516 (57%), Positives = 379/516 (73%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
+ FPRE + YRERHCP + E + C IPAP GY PF WP+SRD +AN P+ LTVEK
Sbjct: 116 LNFPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKK 175
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW++YE + F FPGGGT FP+GAD YID++ +I +K+G++RTA+DTGCGVAS+GAYL
Sbjct: 176 NQNWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYL 235
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRN++ MSFAPRD+HEAQVQFALERGVPA+IGVL +I++P+ +RAFD+AHCSRCLIPWG
Sbjct: 236 MSRNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWG 295
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWE 240
+G Y+IEVDRVLRPGGYW+LSGPPINW+ ++K W+R A LCW
Sbjct: 296 QYNGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWR 355
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDD-SRANFCKSSDADDVWYKKMEGCITPYPEV---- 295
K ++ ++AVWQK N C+ R R FC + + WY K+E C+TP PEV
Sbjct: 356 KLVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSE 415
Query: 296 ----AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDS 350
AGG+L +PERL A+PPRI SGS+ G++ + + ++ KW++ V+ YKK ++ L ++
Sbjct: 416 IKEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAET 475
Query: 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS 410
GRYRN +DMNA GGFA+A+ +WVMNVVP A NTLGVIYERGLIG Y +WCEA S
Sbjct: 476 GRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMS 535
Query: 411 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM 470
TYPRTYD IHA +FSLYKD+C++EDILLEMDRILRP+G++IIRD++D + KVKKI M
Sbjct: 536 TYPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAM 595
Query: 471 RWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 506
+W+ ++ DHE+GPL EKIL VK+YW A SS
Sbjct: 596 QWEGRIGDHENGPLEREKILFLVKEYWTAPAPDQSS 631
|
|
| TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
Identities = 288/509 (56%), Positives = 371/509 (72%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
+ F RE + YR+RHCP EE L C IPAP GY TPF WP SRD +AN P+ LTVEK
Sbjct: 107 LKFSRERLEYRQRHCPEREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKK 166
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW++YE + F FPGGGT FP+GAD YID + +I + +G++RTA+DTGCGVAS+GAYL
Sbjct: 167 NQNWVRYENDRFWFPGGGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYL 226
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRN+ MSFAPRD+HEAQVQFALERGVPA+IG++ TI++PY SRAFD+AHCSRCLIPWG
Sbjct: 227 LSRNITTMSFAPRDTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWG 286
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWE 240
NDG Y++EVDRVLRPGGYW+LSGPPINW+ +K W+R A LCW+
Sbjct: 287 QNDGAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWK 346
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSR-ANFCK-SSDADDVWYKKMEGCITPYPEV--- 295
K ++ ++A+WQK N C+ R+ + FC+ D D WY KM+ C+TP PEV
Sbjct: 347 KVVQRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDA 406
Query: 296 ------AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKIN-RLL 348
AGG+++ +P RL AIPPR++ G++ ++ E++ E++ WK+ V+ YKK++ +L
Sbjct: 407 EDLKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLG 466
Query: 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA 408
++GRYRN++DMNA GGFAAA+ +WVMNVVP A NTLGVIYERGLIG Y +WCEA
Sbjct: 467 ETGRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEA 526
Query: 409 FSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG 468
STYPRTYD IHA +F+LY+ +C E+ILLEMDRILRP G +IIRD+VD +IKVK++
Sbjct: 527 MSTYPRTYDFIHADSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTK 586
Query: 469 GMRWDTKMVDHEDGPLVPEKILVAVKQYW 497
G+ W+ ++ DHE GP EKI AVKQYW
Sbjct: 587 GLEWEGRIADHEKGPHEREKIYYAVKQYW 615
|
|
| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1373 (488.4 bits), Expect = 2.4e-140, P = 2.4e-140
Identities = 257/486 (52%), Positives = 327/486 (67%)
Query: 11 RERHCPP-EEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEG 69
RERHCP +EK CL+P P GY TPFPWP+SR Y + N P+K L K QNW++ EG
Sbjct: 121 RERHCPDIAQEKFRCLVPKPTGYKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEG 180
Query: 70 NVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMS 129
+ F FPGGGT FP G Y+D + SV+P+ +G++RT LD GCGVAS+GA+L + ++ MS
Sbjct: 181 DRFVFPGGGTSFPGGVKDYVDVILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMS 240
Query: 130 FAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIE 189
APRD HEAQVQFALERG+PA++GVL T K+PY SR+FDM HCSRCL+ W + DG Y++E
Sbjct: 241 IAPRDIHEAQVQFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLME 300
Query: 190 VDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKKSEKGEIA 249
VDRVLRP GYWVLSGPP+ + +K +R LCWEK +E +
Sbjct: 301 VDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVV 360
Query: 250 VWQKKVNDESCRARRDDSR-ANFCKSSDADDVWYKKMEGCITPYPEVAGGE---LKAFPE 305
+W+K N CR R + C SSD D WYK+ME CITP P+V LK +PE
Sbjct: 361 IWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAWYKEMEPCITPLPDVNDTNKTVLKNWPE 420
Query: 306 RLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG 365
RL +P R+ +GSI G + ++ D+N W++ V Y + L +G+YRN++DMNAG GG
Sbjct: 421 RLNHVP-RMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKFLSNGKYRNVIDMNAGLGG 479
Query: 366 FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLF 425
FAAA+ +WVMNVVP NTLGV+Y+RGLIG Y +WCEA STYPRTYDLIHA+G+F
Sbjct: 480 FAAALIKYPMWVMNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVF 539
Query: 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLV 485
SLY DKC+I DILLEM RILRPEGA+IIRD D ++KVK I MRW+ M ++
Sbjct: 540 SLYLDKCDIVDILLEMQRILRPEGAVIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFD 599
Query: 486 PEKILV 491
IL+
Sbjct: 600 HGTILI 605
|
|
| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
Identities = 239/507 (47%), Positives = 332/507 (65%)
Query: 8 MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQY 67
+++ ERHCPP EK CLIP P GY P WPKSR+ Y N PY + +K+ Q+W++
Sbjct: 103 LSFLERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKK 162
Query: 68 EGNVFRFPGGGTQFPQGADKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRNVI 126
EG+ F FPGGGT FP+G Y+D + +IP +K+GTVRTA+DTGCGVASWG L R ++
Sbjct: 163 EGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGIL 222
Query: 127 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRY 186
++S APRD+HEAQVQFALERG+PA++G++ T ++P+ S AFDMAHCSRCLIPW G Y
Sbjct: 223 SLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIY 282
Query: 187 MIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKKSEKG 246
++E+ R++RPGG+WVLSGPP+N+ ++ W +C++K ++K
Sbjct: 283 LLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKD 342
Query: 247 EIAVWQKKVNDESCR---ARRDDSRANFCKSS-DADDVWYKKMEGCIT-PYPEV--AG-G 298
+IAVWQK ++D+SC A+ ++ C S + D WY + C+ P P+V +G G
Sbjct: 343 DIAVWQK-LSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKVKKSGLG 401
Query: 299 ELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMD 358
+ +PERL+ P RI G + G SA S + D KWK V YKK+ L + + RN+MD
Sbjct: 402 SIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALGTDKIRNVMD 459
Query: 359 MNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDL 418
MN +GGF+AA+ +WVMNVV + + N+L V+++RGLIG YHDWCEAFSTYPRTYDL
Sbjct: 460 MNTVYGGFSAALIEDPIWVMNVVSSYS-ANSLPVVFDRGLIGTYHDWCEAFSTYPRTYDL 518
Query: 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478
+H LF+L +C ++ ILLEMDRILRP G +IIR+ + + + G+RW + +
Sbjct: 519 LHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLAKGIRWSCRREE 578
Query: 479 HEDGPLVPEKILVAVKQYWVASGNSTS 505
E + EKILV K+ W +S N TS
Sbjct: 579 TEYA-VKSEKILVCQKKLWFSS-NQTS 603
|
|
| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 228/508 (44%), Positives = 321/508 (63%)
Query: 8 MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQY 67
+ + ERHCPP ++ CL+P P GY P WPKS+D Y N PY + +K+ QNW++
Sbjct: 97 LTFMERHCPPVFDRKQCLVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRK 156
Query: 68 EGNVFRFPGGGTQFPQGADKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRNVI 126
EG F FPGGGT FP G Y+D + +IP +K+GT+RTA+DTGCGVASWG L R ++
Sbjct: 157 EGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGIL 216
Query: 127 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRY 186
+S APRD+HEAQVQFALERG+PA++G++ T ++P+ S +FDMAHCSRCLIPW G Y
Sbjct: 217 TVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVY 276
Query: 187 MIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKKSEKG 246
++EV R+LRPGG+WVLSGPP+N++ +K W + +C++ ++K
Sbjct: 277 LLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKD 336
Query: 247 EIAVWQKKVNDESC--RARRD-DSRANFCKSS-DADDVWYKKMEGCIT-PYPEVAGGELK 301
+IAVWQK D C + D D+ C S + D WY + C+ P P++ +L+
Sbjct: 337 DIAVWQKSP-DNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKLKKTDLE 395
Query: 302 A---FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMD 358
+ +PERL+ P RIS +PG + ++ D +KWK YKK+ + S + RN+MD
Sbjct: 396 STPKWPERLHTTPERISD--VPGGNGNVFKHDDSKWKTRAKHYKKLLPAIGSDKIRNVMD 453
Query: 359 MNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDL 418
MN +GG AAA+ + LWVMNVV + A NTL V+++RGLIG YHDWCEAFSTYPRTYDL
Sbjct: 454 MNTAYGGLAAALVNDPLWVMNVVSSYA-ANTLPVVFDRGLIGTYHDWCEAFSTYPRTYDL 512
Query: 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478
+H GLF+ +C+++ ++LEMDRILRP G IIR+ + + +RW +
Sbjct: 513 LHVDGLFTSESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAKELRWSCRKEQ 572
Query: 479 HEDGPLVPEKILVAVKQYWVASGNSTSS 506
E EK+L+ K+ W +S S+ +
Sbjct: 573 TESAS-ANEKLLICQKKLWYSSNASSET 599
|
|
| TAIR|locus:2117733 QUA3 "QUASIMODO 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 237/512 (46%), Positives = 315/512 (61%)
Query: 5 RESMNYRERHCP-PEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQN 63
RE YRERHCP PEE L CLIP P GY P PWP+S + +AN PY + K Q
Sbjct: 105 REMNFYRERHCPLPEETPL-CLIPPPSGYKIPVPWPESLHKIWHANMPYNKIADRKGHQG 163
Query: 64 WIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR 123
W++ EG F FPGGGT FP GA +YI++LA IP+ GT+RTALD GCGVAS+G L S+
Sbjct: 164 WMKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQ 223
Query: 124 NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND 183
++A+SFAPRDSH++Q+QFALERGVPA + +LGT ++P+ + +FD+ HCSRCLIP+ A +
Sbjct: 224 GILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYN 283
Query: 184 GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKKS 243
Y IEVDR+LRPGGY V+SGPP+ W K W A LC+E +
Sbjct: 284 ATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCYELIA 332
Query: 244 EKGEIAVWQKKVNDESCRARRDDSRANFCKSS-DADDVWYKKMEGCITPYPEVAG----G 298
G +W+K V D SC +++ C S D WY K++ C+T V G G
Sbjct: 333 VDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALG 391
Query: 299 ELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYK-KINRLLDSGRYRNIM 357
+ +PERL +P R + + ++ D+ +W + V Y+ +N L S RN+M
Sbjct: 392 TISKWPERLTKVPSR---AIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVM 448
Query: 358 DMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYD 417
DMNA FGGFAA + S +WVMNV+P TL VIY+RGLIG+YHDWCE FSTYPRTYD
Sbjct: 449 DMNAFFGGFAATLASDPVWVMNVIPARKPL-TLDVIYDRGLIGVYHDWCEPFSTYPRTYD 507
Query: 418 LIHAHGLFSLYK------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMR 471
IH G+ SL K +C++ D+++EMDRILRPEG ++IRD + + KV ++ +R
Sbjct: 508 FIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVR 567
Query: 472 WDTKMVDHEDGPLVPEKILVAVKQYWVASGNS 503
W + + + E EKIL+A K W NS
Sbjct: 568 WSSSIHEKEPESHGREKILIATKSLWKLPSNS 599
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q94EJ6 | PMTE_ARATH | 2, ., 1, ., 1, ., - | 0.7224 | 0.9841 | 0.8019 | no | no |
| B9DFI7 | PMT2_ARATH | 2, ., 1, ., 1, ., - | 0.8352 | 0.9960 | 0.8181 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_VIII1310 | hypothetical protein (615 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 506 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-05 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 864 bits (2235), Expect = 0.0
Identities = 313/499 (62%), Positives = 375/499 (75%), Gaps = 17/499 (3%)
Query: 4 PRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQN 63
RE M +RERHCPP EEKL CL+P P GY TP PWPKSRD V YAN P+ L EK QN
Sbjct: 17 SRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQN 76
Query: 64 WIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKN--GTVRTALDTGCGVASWGAYLW 121
W++ EG+ FRFPGGGTQFP GAD YID LA +IP G VRTALD GCGVAS+GAYL
Sbjct: 77 WVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRTALDVGCGVASFGAYLL 136
Query: 122 SRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181
SR+V+ MSFAP+D HEAQVQFALERGVPA++GVLGT ++PY SR+FDMAHCSRCLIPW A
Sbjct: 137 SRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSFDMAHCSRCLIPWHA 196
Query: 182 NDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241
NDG ++EVDRVLRPGGY+VLSGPP+ R +E+LQEE + +E +A LCW+
Sbjct: 197 NDGILLLEVDRVLRPGGYFVLSGPPVY--------ARDEEDLQEEWKAMEALAKSLCWKL 248
Query: 242 KSEKGEIAVWQKKVNDESCRARRDDSRANFCKSS-DADDVWYKKMEGCITPYPEV----A 296
++KG+IA+WQK VN+ R + CK S D D WY ME CITP PEV
Sbjct: 249 VAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVG 308
Query: 297 GGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDSGRYRN 355
GG L+ +PERL A+PPR++SG I GVSAE+++ D+ WK+ V+ YK++ + L+D GR RN
Sbjct: 309 GGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLLIDKGRVRN 368
Query: 356 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRT 415
+MDMNAGFGGFAAA+ +WVMNVVP +TL VIY+RGLIGIYHDWCE FSTYPRT
Sbjct: 369 VMDMNAGFGGFAAALIDDPVWVMNVVPV-DSPDTLPVIYDRGLIGIYHDWCEPFSTYPRT 427
Query: 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475
YDL+HA LFSLYK +CN+EDILLEMDRILRP GA+IIRD+VD + KVKKI MRW+ +
Sbjct: 428 YDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIAKAMRWEVR 487
Query: 476 MVDHEDGPLVPEKILVAVK 494
+ D EDGP PEKIL+A K
Sbjct: 488 ITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 107 LDTGCGVASWGAYL---WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMPY 162
LD GCG L V + D + A +R V+G +P+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKF--VVGDAEDLPF 53
Query: 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGY 199
+FD+ S ++ + R + E+ RVL+PGG
Sbjct: 54 PDESFDVVVSS-LVLHHLPDPERALREIARVLKPGGK 89
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 506 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.94 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.88 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.74 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.69 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.66 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.65 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.64 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.61 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.6 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.58 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.57 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.51 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.5 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.49 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.49 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.48 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.47 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.47 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.46 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.45 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.44 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.44 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.44 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.43 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.43 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.42 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.42 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.41 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.41 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.41 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.4 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.4 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.39 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.39 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.39 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.39 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.39 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.38 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.38 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.36 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.36 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.36 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.36 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.36 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.36 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.35 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.35 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.34 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.34 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.34 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.34 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.34 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.33 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.32 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.31 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.31 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.31 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.31 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.3 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.3 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.3 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.29 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.29 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.29 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.29 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.28 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.28 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.28 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.28 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.28 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.27 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.27 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.27 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.27 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.27 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.26 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.26 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.26 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.25 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.23 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.23 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.23 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.22 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.21 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.21 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.21 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.2 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.2 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.2 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.2 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.19 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.19 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.19 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.19 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.19 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.19 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.18 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.18 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.18 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.17 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.17 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.17 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.16 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.16 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.15 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.15 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.15 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.14 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.14 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.14 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.14 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.13 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.12 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.12 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.12 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.12 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.11 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.11 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.1 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.1 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.1 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.1 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.1 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.1 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.08 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.07 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.07 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.07 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.07 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.06 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.06 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.05 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.05 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.05 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.04 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.04 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.04 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.03 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.03 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.02 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.02 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.02 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.02 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.01 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.01 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.01 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.01 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.0 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.0 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.99 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.99 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.99 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.99 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.98 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.98 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.98 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.97 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.96 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.95 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.95 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.94 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.94 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.93 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.92 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.92 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.91 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.9 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.9 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.9 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.9 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.89 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.89 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.88 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.88 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.87 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.87 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.87 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.87 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.86 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.86 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.85 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.85 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.84 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.84 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.84 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.84 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.83 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.83 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.82 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.82 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.81 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.81 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.81 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.81 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.8 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.79 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.79 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.79 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.78 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.77 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.77 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.77 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.76 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.75 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.75 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.74 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.74 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.74 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.74 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.71 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.71 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.71 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.71 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.71 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.69 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.69 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.68 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.68 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.67 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.67 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.67 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.67 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.66 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.65 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.64 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.64 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.64 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.6 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.6 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.6 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.59 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.59 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.56 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.55 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.53 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.53 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.53 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.53 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.52 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.51 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.51 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.51 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.51 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.5 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.48 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.48 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.46 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.46 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.46 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.44 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.44 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.43 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.43 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.42 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.4 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.4 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.4 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.4 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.39 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.39 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.38 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.38 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.38 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.37 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.36 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.35 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.35 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.33 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.32 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.32 | |
| PLN02366 | 308 | spermidine synthase | 98.32 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.31 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.31 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.31 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.3 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.3 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.29 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.29 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.28 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.27 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.25 | |
| PLN02366 | 308 | spermidine synthase | 98.25 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.25 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.21 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.21 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.2 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.2 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.19 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.18 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.18 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.17 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.14 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.14 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.13 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.12 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.11 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.1 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.1 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.09 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.09 | |
| PLN02476 | 278 | O-methyltransferase | 98.08 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.06 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.05 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.05 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.05 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.97 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.96 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.96 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.96 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.95 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.95 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.94 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.94 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.93 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.93 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.93 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.93 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.92 | |
| PLN02476 | 278 | O-methyltransferase | 97.91 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.91 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.91 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.91 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.9 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.88 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.88 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.85 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.85 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.84 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.83 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.83 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.82 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.81 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.81 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.8 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.8 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.79 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.77 | |
| PLN02823 | 336 | spermine synthase | 97.75 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.73 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.72 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.72 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.69 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.65 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.64 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.64 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.63 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.62 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.61 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.59 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.59 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.58 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.57 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.57 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.55 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.53 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.53 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.52 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.52 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.51 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.5 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.5 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.49 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.48 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.47 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.44 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.43 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.41 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.41 | |
| PLN02823 | 336 | spermine synthase | 97.41 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.41 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.38 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.34 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.33 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.29 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.29 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.25 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.25 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.23 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.22 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.22 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.21 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.21 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.19 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.18 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.18 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.18 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.15 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.15 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.12 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.1 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.09 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.08 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.08 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.06 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.04 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.02 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.99 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.98 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.98 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.97 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.96 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.93 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.91 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.91 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.9 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.88 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.84 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.83 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.79 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.78 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.77 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 96.75 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.73 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.69 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.69 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.63 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.6 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.58 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.53 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.47 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.38 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.37 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.37 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.36 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.34 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.25 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.25 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.24 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.22 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.22 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.21 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.05 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.05 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.03 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.03 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.98 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.98 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.88 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.84 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.82 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.82 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.81 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.79 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.71 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.63 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 95.59 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.54 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.47 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.45 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.42 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.4 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.38 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.36 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.34 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.26 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.25 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 95.23 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.17 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.03 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.0 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.93 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 94.78 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.63 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.56 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.5 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.37 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 94.32 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.26 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.12 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.08 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.91 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 93.86 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.78 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.76 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.75 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 93.59 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.56 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.55 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.47 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.46 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 93.33 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.19 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 93.05 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 93.04 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 92.98 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.76 | |
| PHA01634 | 156 | hypothetical protein | 92.69 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 92.69 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 92.64 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.62 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 92.58 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 92.57 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 92.55 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 92.5 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-127 Score=976.49 Aligned_cols=481 Identities=64% Similarity=1.176 Sum_probs=464.0
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChh
Q 010592 4 PRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQ 83 (506)
Q Consensus 4 ~~~~~~~~~~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~ 83 (506)
++++|+|||||||+.+++.+|++|+|+||+.|++||+|+|++||+|+||+.++.+|+.|+|+..+++++.|||+|++|.+
T Consensus 17 ~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~ 96 (506)
T PF03141_consen 17 SRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPH 96 (506)
T ss_pred CcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCC--CCCCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 84 GADKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
|+.+|++.|.++++. ..+..+++||||||+|+|+++|.+++|+++.+++.+.+++++++|.+||+++.+.+....+||
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLP 176 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLP 176 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcccccc
Confidence 999999999999987 667788999999999999999999999999999999999999999999999999988899999
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceee
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~ 241 (506)
|++++||+|||+.|+++|.++...+|-|+.|+|||||||++++||.+ .++.++...+++.|+++++++||+.
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~ 248 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKK 248 (506)
T ss_pred CCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999889999999999999999999999985 3556778899999999999999999
Q ss_pred ccccCceEEEEecCCCchhhh-ccCCCCCCCCC-CCCCCchhhccCcccccCCcc----cCCCCCcCCccccccCCCCcc
Q 010592 242 KSEKGEIAVWQKKVNDESCRA-RRDDSRANFCK-SSDADDVWYKKMEGCITPYPE----VAGGELKAFPERLYAIPPRIS 315 (506)
Q Consensus 242 ~~~~~~~~i~~kp~~~~~cy~-~~~~~~~~~c~-~~~~~~~wy~~l~~c~~~~~~----~~~~~~~~~p~rl~~~p~~~~ 315 (506)
++++++++|||||.+| +||. +...+.|++|. ++|+|++||++|++||+++|+ .+++.+++||+||+++|+|+.
T Consensus 249 va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~ 327 (506)
T PF03141_consen 249 VAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLS 327 (506)
T ss_pred heeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhh
Confidence 9999999999999987 9999 55569999999 899999999999999999994 578888999999999999999
Q ss_pred CCCCCCCChhhhhhhhhhhHHHHHHHHHHhh-hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH
Q 010592 316 SGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY 394 (506)
Q Consensus 316 ~~~~~~~~~~~f~~d~~~W~~~v~~y~~~~~-~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~ 394 (506)
.+++.|.+.|.|.+|+++|+++|.+|++++. .++++++||||||++|+|||||+|.+.+||||||||++. +++|.+++
T Consensus 328 ~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~-~ntL~vIy 406 (506)
T PF03141_consen 328 SGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSG-PNTLPVIY 406 (506)
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCC-CCcchhhh
Confidence 9999999999999999999999999999887 899999999999999999999999999999999999965 59999999
Q ss_pred hcCccceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceE
Q 010592 395 ERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 395 ~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~ 474 (506)
+|||+|+||+|||+|+|||+|||||||+++|+.+.++|+++++|.||||||||||++||||..++++++++++++|+|++
T Consensus 407 dRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 407 DRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEV 486 (506)
T ss_pred hcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCeEEEEEEe
Q 010592 475 KMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~k 494 (506)
.++++|+|+.++|++|+|+|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 99999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=239.34 Aligned_cols=350 Identities=14% Similarity=0.156 Sum_probs=195.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc--cCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~--~lp~~~~ 165 (506)
..+.+.++.. ++.+|||||||+|.++..|++. .++++|+++.++..+.. .......+.+.+.|.. .++++++
T Consensus 27 ~~il~~l~~~--~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPY--EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCcc--CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCC
Confidence 3455555432 3458999999999999999876 48899998876644321 1111234566667764 5678889
Q ss_pred CeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeeccc
Q 010592 166 AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSE 244 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~ 244 (506)
+||+|+|+.+++|+.++. ..+++++.|+|||||++++............... .....+. ...+..+...-.+.....
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~-~~~~~~~-~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKN-NPTHYRE-PRFYTKVFKECHTRDEDG 180 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccC-CCCeecC-hHHHHHHHHHheeccCCC
Confidence 999999999998865433 6899999999999999999753321110000000 0000000 112222222222222211
Q ss_pred c-Cce-EEEEecCCCchhhhccCCCCCCCCCCCCCCchhhccCcccccCCcccCCCCCcCCccccccCCCCccCCCCCCC
Q 010592 245 K-GEI-AVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERLYAIPPRISSGSIPGV 322 (506)
Q Consensus 245 ~-~~~-~i~~kp~~~~~cy~~~~~~~~~~c~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~p~rl~~~p~~~~~~~~~~~ 322 (506)
. ..+ ...-++. .-|..++.+ |...+..= . .+.......+-+.+.. ++. +..|+
T Consensus 181 ~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~-~---~~~~~~~~~~~~~~~~----~~y-~~~~i 235 (475)
T PLN02336 181 NSFELSLVGCKCI---GAYVKNKKN-------------QNQICWLW-Q---KVSSTNDKGFQRFLDN----VQY-KSSGI 235 (475)
T ss_pred CEEEEEEEEeech---hhhhhccCC-------------cceEEEEE-E---eecCCcchhHHHHhhh----hcc-ccccH
Confidence 1 111 1112222 122211111 21111000 0 0001111111111211 110 00111
Q ss_pred -ChhhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--cc
Q 010592 323 -SAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LI 399 (506)
Q Consensus 323 -~~~~f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~ 399 (506)
..+.|-...-.+...+..-..++..+......+|||+|||+|.++..|++.. ..+|+++|.|+.|+..|.++. ..
T Consensus 236 ~~~~~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~ 313 (475)
T PLN02336 236 LRYERVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK 313 (475)
T ss_pred HHHHHHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC
Confidence 1122222222333334343444444434456789999999999998888753 358999999999999997752 21
Q ss_pred ceeccccccCCC--CC-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-------------------
Q 010592 400 GIYHDWCEAFST--YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------- 457 (506)
Q Consensus 400 ~~~~~~~~~~~~--~p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------- 457 (506)
..+...+.++.. +| ++||+|+|..+|.|. .+.+.+|.|+.|+|||||.++|.|..
T Consensus 314 ~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~ 390 (475)
T PLN02336 314 CSVEFEVADCTKKTYPDNSFDVIYSRDTILHI---QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGY 390 (475)
T ss_pred CceEEEEcCcccCCCCCCCEEEEEECCccccc---CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCC
Confidence 112222233322 33 789999999888854 47789999999999999999997521
Q ss_pred --hhHHHHHHHHhcCCceEE
Q 010592 458 --DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 458 --~~~~~~~~~~~~~~w~~~ 475 (506)
.....+.+++++.+|++.
T Consensus 391 ~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 391 DLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred CCCCHHHHHHHHHHCCCeee
Confidence 134556777888888755
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-23 Score=214.86 Aligned_cols=160 Identities=16% Similarity=0.304 Sum_probs=127.7
Q ss_pred hhhhhhhhHHHHHHHHHHhh-hc----CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccce
Q 010592 327 YQEDSNKWKKHVNAYKKINR-LL----DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI 401 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~~~~-~~----~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~ 401 (506)
|......+.+.+.+|...+. .+ ..+.+|++||+|||+|+||++|.++++.+|.+.+-|.++..+++|.|||+.+.
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~ 166 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAM 166 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchh
Confidence 44555556667777754333 33 55889999999999999999999999999999999999999999999998665
Q ss_pred eccc-cccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC----------hhhHHHHHHHHhcC
Q 010592 402 YHDW-CEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE----------VDEIIKVKKIVGGM 470 (506)
Q Consensus 402 ~~~~-~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~----------~~~~~~~~~~~~~~ 470 (506)
+... ..+||+++++||+|||+..+..+.... ..+|.|++|||||||+++++-+ ....++|++++++|
T Consensus 167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~l 244 (506)
T PF03141_consen 167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSL 244 (506)
T ss_pred hhhhccccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHH
Confidence 5433 468888889999999977776444332 3599999999999999999643 34789999999999
Q ss_pred CceEEEeecCCCCCCCeEEEEEEecc
Q 010592 471 RWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 471 ~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
||+...... .+.|.||+.
T Consensus 245 CW~~va~~~--------~~aIwqKp~ 262 (506)
T PF03141_consen 245 CWKKVAEKG--------DTAIWQKPT 262 (506)
T ss_pred HHHHheeeC--------CEEEEeccC
Confidence 999665322 289999975
|
; GO: 0008168 methyltransferase activity |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=165.11 Aligned_cols=163 Identities=20% Similarity=0.335 Sum_probs=121.2
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChhhHHHHHH
Q 010592 11 RERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYID 90 (506)
Q Consensus 11 ~~~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~ 90 (506)
+--+|++ .||||.+++||.++++....+ +..+++..++..+++.|++ .++ |..-.+...+
T Consensus 17 ~~~~C~~----~h~fd~a~~Gy~~ll~~~~~~-----~~~~~d~~~~~~ar~~fl~--~g~---------y~~l~~~i~~ 76 (272)
T PRK11088 17 NSWICPQ----NHQFDCAKEGYVNLLPVQHKR-----SKDPGDNKEMMQARRAFLD--AGH---------YQPLRDAVAN 76 (272)
T ss_pred CEEEcCC----CCCCccccCceEEeccccccC-----CCCCCcCHHHHHHHHHHHH--CCC---------hHHHHHHHHH
Confidence 3468875 899999999999999866555 4567888999999988876 222 2233344444
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
.+.+.++ ....+|||+|||+|.++..|++. .++++|+|+ .+++.|.++...+.+.+++...+|++
T Consensus 77 ~l~~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~-----~~l~~A~~~~~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 77 LLAERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK-----VAIKYAAKRYPQVTFCVASSHRLPFA 148 (272)
T ss_pred HHHHhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH-----HHHHHHHHhCCCCeEEEeecccCCCc
Confidence 4544443 23357999999999999988764 256676655 55566666666778888899999999
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
+++||+|++.++. ..++++.|+|||||+|++..|...+
T Consensus 149 ~~sfD~I~~~~~~--------~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 149 DQSLDAIIRIYAP--------CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred CCceeEEEEecCC--------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 9999999986531 2368999999999999999876643
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=154.02 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=86.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceeccccccCCCCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~~~~~~~~p~s~Dlv~~~~~~ 425 (506)
+..+|||+|||||-+|..+++... ...|+++|.|++||.+|++|-. +..++.-++.+|+.++|||+|.+++.|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 567899999999999999998644 5799999999999999999843 223444467888667999999999999
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
. +..+++.+|.||.|||||||.+++-+.
T Consensus 130 r---nv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 130 R---NVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred h---cCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 8 666999999999999999999999654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=150.61 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=89.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+.+.+... ++.+|||||||||.++..+++. .++++|+|+.|+..+..+........+.+.++|++.|||+++
T Consensus 41 ~~~i~~~~~~--~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLGIK--PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhCCC--CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 3444554333 5669999999999999999886 489999998887655544433222237889999999999999
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|.+++.+.+ .++...+|+|++|||||||.+++..
T Consensus 119 sFD~vt~~fglrn-v~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 119 SFDAVTISFGLRN-VTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred ccCEEEeeehhhc-CCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 9999999999966 5688999999999999999888853
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-14 Score=153.27 Aligned_cols=297 Identities=13% Similarity=0.091 Sum_probs=160.7
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
..+|||+|||+|.++..++.. .++++|+|+..+..+..+ +...++ .+.+...|... +++.++||+|+|+..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N-~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSN-AIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHH-HHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 358999999999999888753 589999988766544433 333443 34555555432 2345689999997543
Q ss_pred cccCC---------------------Ch----HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHH
Q 010592 177 IPWGA---------------------ND----GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIE 231 (506)
Q Consensus 177 ~~~~~---------------------~~----~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (506)
..... +. ..++.++.++|+|||.+++..... ..+.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------------q~~~v~ 278 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------------QEEAVT 278 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------------hHHHHH
Confidence 22110 00 246778889999999999875322 122344
Q ss_pred HHHHhcceeeccccCceEEEEecCCCchhhhccCCCCCCCCCCCCCCchhhccCcccccCCcccC-CCCCcCCccccccC
Q 010592 232 EIANLLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVA-GGELKAFPERLYAI 310 (506)
Q Consensus 232 ~l~~~~~w~~~~~~~~~~i~~kp~~~~~cy~~~~~~~~~~c~~~~~~~~wy~~l~~c~~~~~~~~-~~~~~~~p~rl~~~ 310 (506)
.+....+|.. +.+ .+..+.. ..+... ...|+.+.-... |-.+
T Consensus 279 ~~~~~~g~~~------~~~-~~D~~g~----------~R~v~~----------~~~~~~rs~~rr~g~~~---------- 321 (506)
T PRK01544 279 QIFLDHGYNI------ESV-YKDLQGH----------SRVILI----------SPINLNRSYARRIGKSL---------- 321 (506)
T ss_pred HHHHhcCCCc------eEE-EecCCCC----------ceEEEe----------ccccCCcceeccCCCCC----------
Confidence 4433333422 112 2333210 000000 001111100000 0000
Q ss_pred CCCccCCCCCCCChhhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH
Q 010592 311 PPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL 390 (506)
Q Consensus 311 p~~~~~~~~~~~~~~~f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l 390 (506)
+...-.--...|-...-...++. ......+||||||.|.|...++... ...|++++|....-+
T Consensus 322 ------------~~~q~~~~e~~~p~~~i~~eklf----~~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~ 384 (506)
T PRK01544 322 ------------SGVQQNLLDNELPKYLFSKEKLV----NEKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGV 384 (506)
T ss_pred ------------CHHHHHHHHhhhhhhCCCHHHhC----CCCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHH
Confidence 00000000000000000011121 2235679999999999999998753 236899999887655
Q ss_pred HHHHh----cCccceeccccccCC----CCC-CceeEEEEccccc-----cccCcCCHHHHHHHHhhhccCCcEEEE-Ee
Q 010592 391 GVIYE----RGLIGIYHDWCEAFS----TYP-RTYDLIHAHGLFS-----LYKDKCNIEDILLEMDRILRPEGAIII-RD 455 (506)
Q Consensus 391 ~~~~~----rg~~~~~~~~~~~~~----~~p-~s~Dlv~~~~~~~-----~~~~~~~~~~~l~e~~RvLrPgG~~ii-~d 455 (506)
..+.. +|+ .++.-.+.++. .++ +++|-||..+==. |.+.|---+..|.++.|+|||||.+.+ +|
T Consensus 385 ~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 385 ANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred HHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 54433 344 23333344332 245 8999999832222 222222235799999999999999998 56
Q ss_pred ChhhHHHHHHHHhcC-CceE
Q 010592 456 EVDEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 456 ~~~~~~~~~~~~~~~-~w~~ 474 (506)
..++.+.+...+... .|+.
T Consensus 464 ~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 464 IENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred CHHHHHHHHHHHHhCCCeEe
Confidence 666777766664443 4663
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-16 Score=151.57 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=75.9
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c--cceecc
Q 010592 331 SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L--IGIYHD 404 (506)
Q Consensus 331 ~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~--~~~~~~ 404 (506)
++.|++.+... +......+|||+|||||.++..|++.-.....|+++|.|++||++|.+|. . +..+..
T Consensus 32 ~~~wr~~~~~~------~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 32 DRRWRRKLIKL------LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp -----SHHHHH------HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHHhc------cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 36787755442 22333558999999999999999875334469999999999999999873 1 222222
Q ss_pred ccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 405 WCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 405 ~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
-++++|+-+++||.|.++++|. +.+++..+|.||+|||||||+++|-|-
T Consensus 106 da~~lp~~d~sfD~v~~~fglr---n~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLR---NFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GG---G-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHH---hhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 3456665559999999999988 556789999999999999999999664
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=147.05 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..++++ .++++|+|+.|+..+..+.......++.+.++|++++|+++++||+|+|++.+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 4559999999999999998875 38899999988876666655544447889999999999999999999999998
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+. .++....++|+.|+|||||.+++..
T Consensus 127 rn-~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 127 RN-FPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GG--SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hh-hCCHHHHHHHHHHHcCCCeEEEEee
Confidence 66 4678999999999999999998853
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-15 Score=125.48 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=73.0
Q ss_pred EeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc---eeccccccCCCCCCceeEEEEccccccccCcCC
Q 010592 357 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG---IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 357 LD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~---~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~ 433 (506)
||+|||+|.++..|++.+ ..+|+++|.+++|++.+.++.... ....-.++++..+++||+|++.++|++. .+
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 899999999999999982 379999999999999999985422 2222234555555999999999999865 57
Q ss_pred HHHHHHHHhhhccCCcEEEE
Q 010592 434 IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii 453 (506)
...+|.|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 88999999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-15 Score=139.82 Aligned_cols=153 Identities=22% Similarity=0.270 Sum_probs=107.2
Q ss_pred CCCCcchhhHH-hhcchhhccCCeEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--c
Q 010592 49 NAPYKSLTVEK-AIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--V 125 (506)
Q Consensus 49 ~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v 125 (506)
++++.+.+... -.+.||+.++++-... .+......|+......- ..-.+.+|||||||.|.++..|++.| |
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~LH----~~N~~rl~~i~~~~~~~--~~l~g~~vLDvGCGgG~Lse~mAr~Ga~V 84 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPLH----KINPLRLDYIREVARLR--FDLPGLRVLDVGCGGGILSEPLARLGASV 84 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeeee----eeccchhhhhhhhhhcc--cCCCCCeEEEecCCccHhhHHHHHCCCee
Confidence 44444444333 3668998555433211 11122233332222210 01245689999999999999999985 8
Q ss_pred EEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 126 IAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 126 ~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++|+++..+..+. ..|.+.++.+.+....++++....++||+|+|..+++|. +++..+++.+.+++||||.+++++.
T Consensus 85 tgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv-~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 85 TGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV-PDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred EEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc-CCHHHHHHHHHHHcCCCcEEEEecc
Confidence 88888887764443 456677777778777788887767899999999999995 7789999999999999999999987
Q ss_pred CCCc
Q 010592 206 PINW 209 (506)
Q Consensus 206 ~~~~ 209 (506)
.-++
T Consensus 163 nrt~ 166 (243)
T COG2227 163 NRTL 166 (243)
T ss_pred ccCH
Confidence 6543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-14 Score=139.41 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=77.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---------cceeccccccCCCCCCceeEEEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---------~~~~~~~~~~~~~~p~s~Dlv~~ 421 (506)
.+..+|||+|||||.++..|++......+|+++|.|++|++.|.+|.. +.....-.+.+|.-+++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 345689999999999998887741112489999999999999987631 11222223445544489999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.++++. .++..+|.|+.|+|||||+++|.|
T Consensus 152 ~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNV---VDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccC---CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 9888844 478899999999999999999976
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.6e-15 Score=121.34 Aligned_cols=90 Identities=26% Similarity=0.424 Sum_probs=71.3
Q ss_pred EEECCCCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 107 LDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 107 LDiGCG~G~~~~~L~~~-~--v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
||+|||+|.++..|+++ + ++++|+++ .+++.++++.. ...+...+...+|+++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE-----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H-----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH-----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999999988 4 67777755 44555555432 2448888999999999999999999999776 7
Q ss_pred ChHHHHHHHHHhcCCCeEEEE
Q 010592 182 NDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 182 ~~~~~l~e~~rvLkPGG~li~ 202 (506)
+...+++|+.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 779999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=135.90 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHH--H-cCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFAL--E-RGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~--~-~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..++++ .++++|+|+.|+..+..+... . ...++.+.+.|...+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 3458999999999999888764 489999998877655433221 1 1235678888999999999999999999
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++++ +++..+++|+.|+|||||+|++..
T Consensus 153 ~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNV-VDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccC-CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 998764 678999999999999999999875
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=140.39 Aligned_cols=123 Identities=20% Similarity=0.378 Sum_probs=95.6
Q ss_pred ChhhHHHHHHHHHhhCCCC---CCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEE
Q 010592 81 FPQGADKYIDQLASVIPIK---NGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVI 152 (506)
Q Consensus 81 f~~~~~~~~~~l~~~l~~~---~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~ 152 (506)
+......+++.+.+.+.+. ...+.+|||||||+|.++..|+++ .++++|+++.++..+.. .+.+.+. ++.+
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~ 172 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSF 172 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEE
Confidence 4444456667777776541 134568999999999999999875 58899998876654433 3333443 4778
Q ss_pred EEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 153 GVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 153 ~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+.|...+|+++++||+|++..+++|+ .+...+++++.|+|||||.|++.+.
T Consensus 173 ~~~D~~~~~~~~~~FD~V~s~~~~~h~-~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 173 QVADALNQPFEDGQFDLVWSMESGEHM-PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEcCcccCCCCCCCccEEEECCchhcc-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888999999999999999999999886 5678999999999999999999753
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-13 Score=123.89 Aligned_cols=153 Identities=12% Similarity=0.165 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc
Q 010592 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE 407 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~ 407 (506)
..|++++-....+...++. ..+|||+|||+|.++..++... ....|+++|.+++|++.|.++ ++. .++..+.
T Consensus 27 ~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEec
Confidence 4788887665555555543 4679999999999988887521 136899999999999877764 331 1333333
Q ss_pred cCCCC--CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE--eecCCCC
Q 010592 408 AFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM--VDHEDGP 483 (506)
Q Consensus 408 ~~~~~--p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~--~~~~~~~ 483 (506)
++..+ +++||+|.|.. ..+++.++.++.|+|||||.+++-+.......+.++.+.++|.+.. .-+..|-
T Consensus 103 d~~~~~~~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (187)
T PRK00107 103 RAEEFGQEEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGL 175 (187)
T ss_pred cHhhCCCCCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCC
Confidence 33333 47999999943 2367889999999999999999999888889999999999998552 2222333
Q ss_pred CCCeEEEEEEec
Q 010592 484 LVPEKILVAVKQ 495 (506)
Q Consensus 484 ~~~~~~l~~~k~ 495 (506)
..+--+.+.||+
T Consensus 176 ~~~~~~~~~~~~ 187 (187)
T PRK00107 176 DGERHLVIIRKK 187 (187)
T ss_pred CCcEEEEEEecC
Confidence 233445566664
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=136.60 Aligned_cols=125 Identities=14% Similarity=0.234 Sum_probs=91.8
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEE
Q 010592 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG 153 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~ 153 (506)
+...+..+-......+.+.+.+. ++.+|||||||+|..+..|+.. .++++|+++.++..+...... ...+.+.
T Consensus 29 g~~~~~~gg~~~~~~~l~~l~l~--~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~ 104 (263)
T PTZ00098 29 GEDYISSGGIEATTKILSDIELN--ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFE 104 (263)
T ss_pred CCCCCCCCchHHHHHHHHhCCCC--CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEE
Confidence 33444444444456666666544 3458999999999999888764 488888877655443332211 2346777
Q ss_pred EeccccCCCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 154 VLGTIKMPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 154 ~~d~~~lp~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..|....|+++++||+|++..+++|+.. +...+++++.++|||||+|+++..
T Consensus 105 ~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 105 ANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7888888999999999999888878653 568999999999999999999864
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=135.68 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+.+|||||||+|.++..|++.+ |+++|+++.++..+... +...+ ..+.+.+.++..+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 45689999999999999998874 88888888766544432 22222 246677788888888888999999999998
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+ .++..+++++.++|||||.+++++...
T Consensus 210 Hv-~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HV-ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hc-CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 85 568999999999999999999987654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=131.70 Aligned_cols=113 Identities=25% Similarity=0.394 Sum_probs=87.8
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
...+.+.+.++. ....+|||+|||+|.++..|++. .++++|+++.+ ++.++++.....+.+.|...+|+++
T Consensus 29 ~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~-----l~~a~~~~~~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPM-----LAQARQKDAADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHH-----HHHHHhhCCCCCEEEcCcccCcCCC
Confidence 334455666643 23458999999999999999876 47888887644 4455554444456778888999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++||+|+++.++ +|..++..++.++.++|||||.|+++++..
T Consensus 102 ~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 102 ATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999999877 667888999999999999999999987544
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=126.97 Aligned_cols=143 Identities=12% Similarity=0.088 Sum_probs=99.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccceecccccc---CCCCCCceeEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCEA---FSTYPRTYDLIH 420 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~~~~~~~~~---~~~~p~s~Dlv~ 420 (506)
.+......+|||+|||+|.++..|++.-....+|+++|.+++|++.+.++. ....+...+.+ ++..+++||+|+
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 119 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVT 119 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEE
Confidence 344344568999999999999999874212358999999999999887652 11122222233 332238999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------------------------
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------------------ 458 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------------------ 458 (506)
+..++++ ..+...+|.|+.|+|||||++++.+...
T Consensus 120 ~~~~l~~---~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (231)
T TIGR02752 120 IGFGLRN---VPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDF 196 (231)
T ss_pred Eeccccc---CCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHc
Confidence 9888873 4467889999999999999999866321
Q ss_pred -hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 459 -EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 459 -~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
..+++++++++.+++...+..-.+ ....+.+++|
T Consensus 197 ~~~~~l~~~l~~aGf~~~~~~~~~~--g~~~~~~~~~ 231 (231)
T TIGR02752 197 PGMDELAEMFQEAGFKDVEVKSYTG--GVAAMHMGFK 231 (231)
T ss_pred CCHHHHHHHHHHcCCCeeEEEEccc--ceEEEEEEEC
Confidence 125678899999999654433322 2355666665
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-13 Score=134.15 Aligned_cols=148 Identities=16% Similarity=0.241 Sum_probs=103.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHhh--hcCC---------------CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCc
Q 010592 325 ESYQEDSNKWKKHVNAYKKINR--LLDS---------------GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADK 387 (506)
Q Consensus 325 ~~f~~d~~~W~~~v~~y~~~~~--~~~~---------------~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~ 387 (506)
..|.+.++|-...+..|+.++. .+.+ .+..+|||+|||+|.++..|+... ..+|+++|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 4566777777777777766654 2333 344589999999999998887642 35899999999
Q ss_pred ccHHHHHhcCc-cceeccccccCCC--CC-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-----
Q 010592 388 NTLGVIYERGL-IGIYHDWCEAFST--YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----- 458 (506)
Q Consensus 388 ~~l~~~~~rg~-~~~~~~~~~~~~~--~p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----- 458 (506)
+|+..|.++.. ...+...+.++.. ++ ++||+|++..+|.|.. ..+...+|.++.|+|||||+|+|.|...
T Consensus 86 ~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~ 164 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCADKIEN 164 (263)
T ss_pred HHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccccccC
Confidence 99999998732 1122222333322 33 8999999987776432 2367889999999999999999976411
Q ss_pred -----------------hHHHHHHHHhcCCceEE
Q 010592 459 -----------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 459 -----------------~~~~~~~~~~~~~w~~~ 475 (506)
...++.+++++.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 165 WDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 22456667777777744
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8e-13 Score=129.93 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=80.1
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEcc
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~ 423 (506)
+..+......+|||+|||+|.++..|.+.+ ..|+++|.+++|++.+.++.. ......-.+.++..+++||+|.++.
T Consensus 35 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 35 LAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL 111 (251)
T ss_pred HHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc
Confidence 334444456789999999999999998865 589999999999999998753 1112111233443448999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.+ ..++..+|.|+.|+|||||.++++.
T Consensus 112 ~l~~---~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 112 AVQW---CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhhh---cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 7763 3478899999999999999999975
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-13 Score=134.48 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=91.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceecccc---ccCCCCCCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWC---EAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~---~~~~~~p~s~Dlv~~~~~~ 425 (506)
..+|||+|||+|.++..|+..+ .+|+++|.+++|++.|.++. +...+...+ ++++..+++||+|.|..+|
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4589999999999999998865 58999999999999998762 111222333 3444444899999999999
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------------hHHHHHHHHhcCCceEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------~~~~~~~~~~~~~w~~~ 475 (506)
+| ..++..+|.++.|+|||||.++|.+... ..+++..++++.++++.
T Consensus 209 eH---v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 209 EH---VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred Hh---cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 84 4578899999999999999999975211 24678888888888865
Q ss_pred E
Q 010592 476 M 476 (506)
Q Consensus 476 ~ 476 (506)
.
T Consensus 286 ~ 286 (322)
T PLN02396 286 E 286 (322)
T ss_pred E
Confidence 3
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-11 Score=125.22 Aligned_cols=140 Identities=17% Similarity=0.107 Sum_probs=93.9
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc--ceecc-ccccCCCCC-Ccee
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHD-WCEAFSTYP-RTYD 417 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~--~~~~~-~~~~~~~~p-~s~D 417 (506)
..+......+|||+|||+|.++..++++. ....|+++|.|+.|++.|.+. +.. ..+.. +...++..+ .+||
T Consensus 222 ~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fD 300 (378)
T PRK15001 222 QHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFN 300 (378)
T ss_pred HhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEE
Confidence 33433334589999999999999998753 236899999999999988764 111 11111 122233344 6899
Q ss_pred EEEEccccccccCcC--CHHHHHHHHhhhccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010592 418 LIHAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 418 lv~~~~~~~~~~~~~--~~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
+|.|+.-|+...... ....++.+..|+|||||.|+|.- ..++..+|++++... .... ...+++++-++
T Consensus 301 lIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~----~~va----~~~kf~vl~a~ 372 (378)
T PRK15001 301 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNC----TTIA----TNNKFVVLKAV 372 (378)
T ss_pred EEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCc----eEEc----cCCCEEEEEEE
Confidence 999988886322111 23578999999999999999963 456777777765422 2322 22478888888
Q ss_pred e
Q 010592 494 K 494 (506)
Q Consensus 494 k 494 (506)
|
T Consensus 373 k 373 (378)
T PRK15001 373 K 373 (378)
T ss_pred e
Confidence 8
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-13 Score=126.31 Aligned_cols=119 Identities=13% Similarity=0.229 Sum_probs=86.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|.++..|++++ .+|+++|.|+.|++.+.++ ++ ..++..+.++..+ +.+||+|.|..+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEEEecch
Confidence 34679999999999999999976 4899999999999977653 33 1122233444433 4789999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------h---hHHHHHHHHhcCCceEEEe
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------D---EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------~---~~~~~~~~~~~~~w~~~~~ 477 (506)
++.. ..+...++.++.|+|||||++++.... + ..+++.+.+. +|++...
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 6433 345778999999999999996652210 0 3456777776 7886554
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-13 Score=116.84 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=78.2
Q ss_pred CceEEeecCcccHHHHHHHh--CCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccC---CCCCCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF---STYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~--~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~---~~~p~s~Dlv~~~~ 423 (506)
..+|||+|||+|.++.+|++ .+ .+|+++|.++.|++.|.++- ....++..+.++ ...+..||+|.+..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPG---ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 35799999999999999998 55 57999999999999988874 333444445666 33447899999988
Q ss_pred -ccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 424 -LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 -~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+.++.+..+...+|.++.+.|||||+++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34434434556789999999999999999975
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=131.24 Aligned_cols=139 Identities=11% Similarity=0.135 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--c--Cccceeccccc
Q 010592 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--R--GLIGIYHDWCE 407 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--r--g~~~~~~~~~~ 407 (506)
..|+..+. |..++..+.....++|||+|||+|.++..|+..+. ..|+++|.|+.|+..+.. + +.....+....
T Consensus 102 ~e~~s~~~-~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 102 SEWRSDIK-WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred HHHHHHHH-HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 34555444 33344444445567899999999999999887653 369999999999875321 1 11111222222
Q ss_pred cCCCCC--CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC------------------------hhhHH
Q 010592 408 AFSTYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE------------------------VDEII 461 (506)
Q Consensus 408 ~~~~~p--~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~------------------------~~~~~ 461 (506)
++..+| .+||+|+|.+++. |..++..+|.|+.|+|||||.|+|.+. .....
T Consensus 179 ~ie~lp~~~~FD~V~s~gvL~---H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~ 255 (314)
T TIGR00452 179 GIEQLHELYAFDTVFSMGVLY---HRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVS 255 (314)
T ss_pred CHHHCCCCCCcCEEEEcchhh---ccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHH
Confidence 333333 6899999999998 456888999999999999999998531 01356
Q ss_pred HHHHHHhcCCceEEE
Q 010592 462 KVKKIVGGMRWDTKM 476 (506)
Q Consensus 462 ~~~~~~~~~~w~~~~ 476 (506)
.+...+++.+++...
T Consensus 256 ~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 256 ALKNWLEKVGFENFR 270 (314)
T ss_pred HHHHHHHHCCCeEEE
Confidence 778889999998653
|
Known examples to date are restricted to the proteobacteria. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-13 Score=130.59 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=81.6
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEc
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 422 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~ 422 (506)
.++..+......+|||+|||+|.++..|++.. ...+|+++|.|+.|++.|.++++--...+ .++++ .+++||+|+|+
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~~~~~~~d-~~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERGVDARTGD-VRDWK-PKPDTDVVVSN 96 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcCCcEEEcC-hhhCC-CCCCceEEEEe
Confidence 34555555556789999999999999998762 23589999999999999998864222211 12332 23899999999
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.+|++.. +...+|.++.|+|||||+++|.
T Consensus 97 ~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 97 AALQWVP---EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hhhhhCC---CHHHHHHHHHHhCCCCcEEEEE
Confidence 9998544 6788999999999999999995
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-13 Score=122.68 Aligned_cols=97 Identities=21% Similarity=0.347 Sum_probs=75.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccC
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
....+|||+|||+|.++..|++.+. +++++|.++.|++. +.......+ .+.....+++||+|+|..+|+|..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~-~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD-AQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE-CHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh-hhhhhccccchhhHhhHHHHhhcc-
Confidence 3456899999999999999988763 89999999999888 222122111 011222349999999999999665
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++..+|.+|.|+|||||+++|.+..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 6889999999999999999998764
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=124.13 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=93.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCe-----EEEEeecCCCcccHHHHHhcC----ccce--eccc---cccCCCC
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLW-----VMNVVPTLADKNTLGVIYERG----LIGI--YHDW---CEAFSTY 412 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~-----~~~v~~~d~~~~~l~~~~~rg----~~~~--~~~~---~~~~~~~ 412 (506)
.+.....-++|||+||||-.|..+.+.-.. ..+|+..|++++||.++.+|. +... +... +|++|+-
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 455666678999999999999988764222 268999999999999988875 3221 2222 3678744
Q ss_pred CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhH-HHHHHHHhcCCceE
Q 010592 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWDT 474 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~-~~~~~~~~~~~w~~ 474 (506)
+++||....++.+. +..+++.+|.|++|||||||+|.+-+-..+. +.|+.++.+--.++
T Consensus 175 d~s~D~yTiafGIR---N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIR---NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CCcceeEEEeccee---cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 49999999988888 5668899999999999999999997765544 45666655544443
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=124.05 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=75.9
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++..|+++ .|+++|+|+.++..+....+ ..+.. +.+.+.|...++++ ++||+|+|+.+++++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKA-AENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL 108 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC
Confidence 358999999999999999987 48899999877755544333 34443 56666777776664 579999999988665
Q ss_pred CC-ChHHHHHHHHHhcCCCeEEEEE
Q 010592 180 GA-NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 180 ~~-~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+ +...+++++.++|||||++++.
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43 3379999999999999996553
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=125.42 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=73.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~ 432 (506)
..+|||+|||||.++..|++.. ..+|+++|.|++||+.|.++.. .++..++.+|+.+++||+|.++.+++ +..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~lp~~d~sfD~v~~~~~l~---~~~ 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD--KVVGSFEALPFRDKSFDVVMSSFALH---ASD 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc--eEEechhhCCCCCCCEEEEEecChhh---ccC
Confidence 4589999999999999998863 2589999999999999988742 23333466776669999999998887 456
Q ss_pred CHHHHHHHHhhhccCCc
Q 010592 433 NIEDILLEMDRILRPEG 449 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG 449 (506)
+++.+|.||.|||||.+
T Consensus 125 d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CHHHHHHHHHHHhcCce
Confidence 88999999999999953
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-13 Score=130.96 Aligned_cols=122 Identities=24% Similarity=0.419 Sum_probs=83.7
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHH----HcCC
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFAL----ERGV 148 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~----~~~~ 148 (506)
|+.+...+..+....++.+.+.+.+.++ .+|||||||.|.++.+++++ ++.++.+ .+++.+.+.++ +.|+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPG--DRVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCC
Confidence 5666666777778888899999877654 49999999999999999998 6444444 33455555544 4454
Q ss_pred C--eEEEEeccccCCCCCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEE
Q 010592 149 P--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 149 ~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~ 203 (506)
. +.+...|..+++. +||.|++..+++|+... ...+++++.++|||||.+++.
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3 5666677776654 89999999999997543 379999999999999999984
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=125.26 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=85.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+....+......+.+...|...+++++
T Consensus 35 ~~~l~~l~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQ--AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 4555666443 3459999999999999988764 47899998876655444433222224667778888888888
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|++..++++ .++...+++++.++|+|||++++..+
T Consensus 113 ~~fD~V~~~~~l~~-~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRN-VPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEeccccc-CCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99999999988755 56678999999999999999998653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=133.33 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=76.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc---cCCCCCCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE---AFSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~---~~~~~p~s~Dlv~~~~ 423 (506)
....+|||||||+|.++..|+++. ..+|+++|.++.|++.+.++ |+...+...+. .+++.+++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 345689999999999999998852 36899999999999987664 43222222222 3443448999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.|. .+...+|.|+.|+|||||.|+|.+
T Consensus 195 ~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHM---PDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhcc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 88754 467889999999999999999954
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=123.14 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=85.0
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhC----------CcEEEecCccchHHHHHHHHHHcCC----CeEEEEeccccCCCCC
Q 010592 99 KNGTVRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALERGV----PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 99 ~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vdis~~di~~~~~~~a~~~~~----~~~~~~~d~~~lp~~~ 164 (506)
.++.+.++||++||||..+..+.+. +|+++||++.|+..+.. .+.++++ ...+..+|++.|||++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 4456679999999999888877654 48999999988865554 3433433 3678888999999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++||+.++++.+..+ .++++.|+|++|+|||||+|.+-.
T Consensus 176 ~s~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CcceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999988664 678999999999999999998653
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=122.51 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=76.5
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
+.+|||+|||+|.++..|++++ |+++|+++.++..+.. .+...++++...+.+....+++ ++||+|+|+.+++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence 3489999999999999999874 8999999877755443 3445566666666676655654 5799999999887764
Q ss_pred CC-hHHHHHHHHHhcCCCeEEEEE
Q 010592 181 AN-DGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 181 ~~-~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+ ...+++++.++|||||++++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 32 378999999999999996654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-13 Score=120.60 Aligned_cols=95 Identities=27% Similarity=0.537 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
.+.+|||||||+|.++..|++. .++++|+++.++.. ........+....+.++++||+|+|+.+++|+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 4559999999999999999887 47888887755533 22333333344555678899999999999885
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++..+|+++.++|||||+++++++..
T Consensus 92 -~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 92 -PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 468999999999999999999998754
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=111.38 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=76.8
Q ss_pred CCEEEEECCCCChhHHHHhh--C--CcEEEecCccchHHHHHHHHHH-cCCCeEEEEecc-ccCCCCCCCeeEEEEcC-c
Q 010592 103 VRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGT-IKMPYASRAFDMAHCSR-C 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~--~--~v~~vdis~~di~~~~~~~a~~-~~~~~~~~~~d~-~~lp~~~~sfDlV~~~~-~ 175 (506)
+.+|||||||+|.++..+++ . .++++|+++.++..+..+.... ...++.+...|. ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 45899999999999999998 4 4899999998776666555332 245678888888 33333 34699999998 4
Q ss_pred ccccC--CChHHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIPWG--ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~--~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++. ++...+++++.+.|+|||+|++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44333 234789999999999999999975
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=127.07 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=81.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.+.. .++.+|||||||+|.++..|+++ .++++|+|+.++ +.|++++ +.+.+.|...++ +++
T Consensus 19 ~~ll~~l~~--~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-----~~a~~~~--~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 19 YDLLARVGA--ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-----AAARERG--VDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHHhCCC--CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHhcC--CcEEEcChhhCC-CCC
Confidence 345555543 34469999999999999999875 478888876544 4445544 456667777664 567
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|+.+++| .+++..+++++.++|||||++++..+.
T Consensus 89 ~fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 89 DTDVVVSNAALQW-VPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CceEEEEehhhhh-CCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999855 567899999999999999999998653
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=128.44 Aligned_cols=111 Identities=22% Similarity=0.212 Sum_probs=83.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHH-HcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFAL-ERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~-~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+...++. ..+.+|||||||+|.++..++..+ |+++|+|+.++......... ....++.+...++..+|+ ++
T Consensus 112 ~~l~~~l~~--l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSP--LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHHhhCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 445555532 235699999999999999998763 88899887666432221111 113357778888888988 78
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|+|..+++|. .++..+|+++.++|+|||.|++.+
T Consensus 189 ~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 189 AFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999884 678899999999999999999864
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=128.49 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=86.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEcccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~~~~ 427 (506)
.+|||+|||+|.++.+|++.+ .+|+++|.|+.|++.+.++ ++ .+...+.++.. ++++||+|.+..+|++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhh
Confidence 479999999999999999876 5899999999999977654 33 12222334433 3589999999988875
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEe---C------h-----hhHHHHHHHHhcCCceEEEe
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRD---E------V-----DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d---~------~-----~~~~~~~~~~~~~~w~~~~~ 477 (506)
.. ..++..++.+|.|+|||||+++|.. . . -...+|++++.. |++...
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 43 4467889999999999999966631 1 0 145778888876 887654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=120.35 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=84.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..|++++ ..|+++|.|+.|++.+.++ ++. +...+.++.. ++.+||+|+++.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDFIFSTVVFM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCEEEEecccc
Confidence 4579999999999999999876 5899999999999977554 331 1111222222 347899999988887
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeC-----------h---hhHHHHHHHHhcCCceEEEee
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE-----------V---DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-----------~---~~~~~~~~~~~~~~w~~~~~~ 478 (506)
+.. ..+.+.++.++.|+|||||+++|.+. . -..++|.+++.. |++...+
T Consensus 106 ~~~-~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~ 168 (195)
T TIGR00477 106 FLQ-AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYN 168 (195)
T ss_pred cCC-HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEee
Confidence 543 34567899999999999999655311 0 145778887764 8766544
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=125.22 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||||||+|.++..|++. .++++|+|+.|+.. |.++. ...+.+...+|+++++||+|+++++++|
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~-----a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~- 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM-----NLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHA- 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH-----HHhcc---ceEEechhhCCCCCCCEEEEEecChhhc-
Confidence 458999999999999999876 47888887766544 43332 2456788899999999999999999866
Q ss_pred CCChHHHHHHHHHhcCCCe
Q 010592 180 GANDGRYMIEVDRVLRPGG 198 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG 198 (506)
.+++..+++|+.|+|||.+
T Consensus 123 ~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cCCHHHHHHHHHHHhcCce
Confidence 5678999999999999953
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-12 Score=118.00 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=84.6
Q ss_pred EEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeE-EEEeccccCC-CCCCCeeEEEEcCccccc
Q 010592 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIKMP-YASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~-~~~~d~~~lp-~~~~sfDlV~~~~~l~~~ 179 (506)
.|||||||+|..-.++... .|+++|.++.|.+-+....+..+...+. +++++.+++| ++++|+|.|+|.+++..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS- 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS- 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec-
Confidence 5899999999877776633 5889999988776666666666666666 8888999998 89999999999999865
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..++...|+|+.|+|||||.+++..+..
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 6788999999999999999999975433
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=117.66 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=79.8
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
+.++||+|||.|+.+.+|+++| |+++|+|+..+.. ..+.|.+.++++...+.|.....++ +.||+|++..+++++.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 4589999999999999999996 8999999876644 4567788889998888898777765 6899999988887766
Q ss_pred CCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 181 AND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 181 ~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+. ..+++.|...++|||++++.+
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 688999999999999998853
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=122.42 Aligned_cols=165 Identities=18% Similarity=0.309 Sum_probs=121.3
Q ss_pred hhhhhhhhhhHHHHHH---H------HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh
Q 010592 325 ESYQEDSNKWKKHVNA---Y------KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE 395 (506)
Q Consensus 325 ~~f~~d~~~W~~~v~~---y------~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~ 395 (506)
..|..-..++.+..-. | ..++.....+..+++||+|||||-++.+|.+. +-.++++|+|.|||+.|.+
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHh
Confidence 4466666777664432 3 12233566777999999999999999999875 2579999999999999999
Q ss_pred cCccc-eeccccccCC--CCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-h-------------
Q 010592 396 RGLIG-IYHDWCEAFS--TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-D------------- 458 (506)
Q Consensus 396 rg~~~-~~~~~~~~~~--~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~------------- 458 (506)
||+.. .++.-...|. .-++.||+|.+..||..+. +++.++.-..+.|.|||.|+++-.. +
T Consensus 166 Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~Ry 242 (287)
T COG4976 166 KGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRY 242 (287)
T ss_pred ccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhh
Confidence 99732 1221112233 2348999999999999766 6778999999999999999996211 0
Q ss_pred --hHHHHHHHHhcCCceEEEe-----ecCCCCCCCeEEEEEEec
Q 010592 459 --EIIKVKKIVGGMRWDTKMV-----DHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 459 --~~~~~~~~~~~~~w~~~~~-----~~~~~~~~~~~~l~~~k~ 495 (506)
....++..+...+.++..+ ..+.|...+..+++++|+
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred ccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 4467889999999997633 233666678888999885
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-12 Score=115.44 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=99.8
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCC-C-CceeEEEEcc
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTY-P-RTYDLIHAHG 423 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~-p-~s~Dlv~~~~ 423 (506)
.+....++++||+|||.|.|+..|+.+. -.++++|.|+..++.|++|- -...+.....++|.. | ++||||+++-
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 5788889999999999999999999973 78999999999999999983 224444455667654 4 9999999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
++-++.+..++..++..+...|+|||.||+-+-.+ -.+.|.+++...-=++..++-..++ ..|-.|+++
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 193 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS-PNEDCLLAR 193 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-TTSEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-CCCceEeee
Confidence 99887766778899999999999999999954321 3345555555544444443333222 456666664
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-12 Score=123.58 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=81.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+...++. .++.+|||||||+|.++..+++. .++++|+++.++ +.++++...+.+...|...+. +.+
T Consensus 21 ~~ll~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-----~~a~~~~~~~~~~~~d~~~~~-~~~ 92 (258)
T PRK01683 21 RDLLARVPL--ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-----AEARSRLPDCQFVEADIASWQ-PPQ 92 (258)
T ss_pred HHHHhhCCC--cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHhCCCCeEEECchhccC-CCC
Confidence 445555543 33469999999999999999874 488888876544 445554445667777776654 456
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|+.+++ |..+...+++++.++|||||.+++..+.
T Consensus 93 ~fD~v~~~~~l~-~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 93 ALDLIFANASLQ-WLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CccEEEEccChh-hCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999999999885 4667889999999999999999998654
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=125.37 Aligned_cols=111 Identities=21% Similarity=0.146 Sum_probs=84.1
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YASR 165 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp-~~~~ 165 (506)
.+.+.++ ..+.+|||+|||+|.++..|++.+ |+++|+++.++..+... +.+.+. .+.+.+.+...++ ++++
T Consensus 36 ~~l~~l~---~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~-~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP---PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQA-AEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC---CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4444443 234589999999999999999874 88999988777555433 333343 3566777776664 5678
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|..+++| ..++..+++++.++|||||++++....
T Consensus 112 ~fD~V~~~~vl~~-~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 112 PVDLILFHAVLEW-VADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCEEEehhHHHh-hCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 9999999999866 467889999999999999999987543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-13 Score=112.07 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=57.5
Q ss_pred EEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcccccC
Q 010592 107 LDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 107 LDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l~~~~ 180 (506)
||||||+|.++..++++ .++++|+|+.++..+..+.................... ...++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999998776 48999999998855554444433333333333332221 123599999999999886
Q ss_pred CChHHHHHHHHHhcCCCeEE
Q 010592 181 ANDGRYMIEVDRVLRPGGYW 200 (506)
Q Consensus 181 ~~~~~~l~e~~rvLkPGG~l 200 (506)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 77899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-12 Score=125.27 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=75.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccCC-CCCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAFS-TYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~~-~~p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|++.+ .+|+++|.|++|++.|.++ |+...+...+ ++++ ..+++||+|++..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4689999999999999999975 5899999999999998875 3222222212 2233 23489999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|++. .++..+|.++.|+|||||+++|.
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 9854 46788999999999999999884
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-12 Score=114.72 Aligned_cols=102 Identities=22% Similarity=0.300 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCChhHHHHhh-C----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWS-R----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~-~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..|++ . .++++|+++.++..+.. .+.+.+. .+.+.+.|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 345899999999999999993 2 48999999877755544 3334444 4888999998877 65 799999999
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.++++ ..++..+++++.++|++||.+++..+.
T Consensus 81 ~~l~~-~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHH-FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGG-TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhh-ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98855 566789999999999999999998654
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-12 Score=123.71 Aligned_cols=125 Identities=19% Similarity=0.338 Sum_probs=92.9
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCC-
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVP- 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~--v~~vdis~~di~~~~~~~a~~~~~~- 149 (506)
|+.....+.......++.+.+.+.+.++. +|||||||.|.++.+++++ + |+++++|+.....+. +.+.+.|.+
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~gl~~ 122 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARGLED 122 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcCCCc
Confidence 66666677777778889999999776554 9999999999999999987 4 566666654433222 223344555
Q ss_pred -eEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 150 -AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 -~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+...|...+. +.||-|++..+++|+.... ..+++.+.++|+|||.+++-+
T Consensus 123 ~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 123 NVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 444444544443 4499999999999987644 899999999999999999854
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-12 Score=128.33 Aligned_cols=129 Identities=15% Similarity=0.159 Sum_probs=92.4
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--cCc--cceecccc---ccCCCCCC
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--RGL--IGIYHDWC---EAFSTYPR 414 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--rg~--~~~~~~~~---~~~~~~p~ 414 (506)
..++..+.....++|||||||+|.++..|+..+. ..|+++|.|+.|+..+.. +.. ...++..+ +.++. ++
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 3334444444457899999999999999988653 359999999988864322 211 11222222 34444 68
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC------------------------hhhHHHHHHHHhcC
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE------------------------VDEIIKVKKIVGGM 470 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~------------------------~~~~~~~~~~~~~~ 470 (506)
+||+|+|..++. |..++..+|.++.|+|||||.++|.+. ......+..++.+.
T Consensus 189 ~FD~V~s~~vl~---H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 189 AFDTVFSMGVLY---HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERA 265 (322)
T ss_pred CcCEEEECChhh---ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHc
Confidence 999999999887 556888999999999999999998531 11346788889999
Q ss_pred CceEEE
Q 010592 471 RWDTKM 476 (506)
Q Consensus 471 ~w~~~~ 476 (506)
+++...
T Consensus 266 GF~~i~ 271 (322)
T PRK15068 266 GFKDVR 271 (322)
T ss_pred CCceEE
Confidence 998553
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=112.98 Aligned_cols=190 Identities=18% Similarity=0.263 Sum_probs=122.7
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
.+...++. ....+|.|+|||+|..+..|+++ .++++|-|+ +|+..|+.+.++..|..+|+..+. +...
T Consensus 21 dLla~Vp~--~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~-----~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~ 92 (257)
T COG4106 21 DLLARVPL--ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSP-----AMLAKAAQRLPDATFEEADLRTWK-PEQP 92 (257)
T ss_pred HHHhhCCc--cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCH-----HHHHHHHHhCCCCceecccHhhcC-CCCc
Confidence 34445543 34458999999999999999988 366666665 455566777888999988987765 4668
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeeccccC
Q 010592 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~~ 246 (506)
+|+++++-+| ||.++-..+|..+...|.|||.|.+-.|.. +..+ ....|.+.++..-|.....
T Consensus 93 ~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN--------~dep------sH~~mr~~A~~~p~~~~l~-- 155 (257)
T COG4106 93 TDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN--------LDEP------SHRLMRETADEAPFAQELG-- 155 (257)
T ss_pred cchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc--------cCch------hHHHHHHHHhcCchhhhhC--
Confidence 9999999887 888888999999999999999999998765 1111 2334566666655655443
Q ss_pred ceEEEEecCCCchhhhccCCCCCCCCCCCCCCchhhccCcccccCCcccCCCCCcCCcccc
Q 010592 247 EIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERL 307 (506)
Q Consensus 247 ~~~i~~kp~~~~~cy~~~~~~~~~~c~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~p~rl 307 (506)
+..+.+++....+.|-.- -.+--|.-+-=...+|.+|..--.....+.|..+.+|=++|
T Consensus 156 ~~~~~r~~v~s~a~Yy~l--La~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L 214 (257)
T COG4106 156 GRGLTRAPLPSPAAYYEL--LAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRL 214 (257)
T ss_pred ccccccCCCCCHHHHHHH--hCcccceeeeeeeeccccCCCccchhhheeccccceecccc
Confidence 333357777656666410 11223432221223454543321111145566666664444
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=122.84 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=80.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHH-HHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQV-QFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~-~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+...+.. .++++|||||||+|.++..++..+ ++++|.|+.++..... +........+.+...+...+|.. .
T Consensus 111 ~~~l~~l~~--~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~ 187 (314)
T TIGR00452 111 DRVLPHLSP--LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-Y 187 (314)
T ss_pred HHHHHhcCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-C
Confidence 445555532 345699999999999988887763 7888888766543211 11111123455666777788764 4
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|+|+.+++|+ .++..+|++++++|||||.|++.+
T Consensus 188 ~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 188 AFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEE
Confidence 89999999999885 678899999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-12 Score=110.33 Aligned_cols=92 Identities=28% Similarity=0.482 Sum_probs=69.8
Q ss_pred EEEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCc-cc
Q 010592 106 ALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC-LI 177 (506)
Q Consensus 106 VLDiGCG~G~~~~~L~~~-------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~-l~ 177 (506)
|||+|||+|..+..+.+. .++++|+++.++..+.... .+.+.++.+.+.|..++++.+++||+|+|+.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~-~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF-SEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS-HHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc-hhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999888753 4788888776665444333 23456899999999999988889999999655 77
Q ss_pred ccCCCh-HHHHHHHHHhcCCCe
Q 010592 178 PWGAND-GRYMIEVDRVLRPGG 198 (506)
Q Consensus 178 ~~~~~~-~~~l~e~~rvLkPGG 198 (506)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 755433 799999999999998
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-12 Score=124.89 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccceeccccccCCC
Q 010592 336 KHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDWCEAFST 411 (506)
Q Consensus 336 ~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~~~~~~~~~~~~ 411 (506)
...+.+..++..+...+..+|||+|||.|+++.+++++- ..+|+++.+|++..+.|.+ +|+...+.-.+.++..
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 345556666665566667799999999999999999871 3689999999999997765 4664444444567767
Q ss_pred CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 412 ~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++.+||.|.+-.+|.|.. +.+.+..+.+++|+|||||.+++
T Consensus 124 ~~~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp ---S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEE
T ss_pred cCCCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEE
Confidence 778999999999999876 35778899999999999999998
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=131.30 Aligned_cols=112 Identities=18% Similarity=0.306 Sum_probs=85.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
+.+.+.+.. .++.+|||||||+|..+..|++. .++++|+|+.++..+..+ +......+.+.+.|...+++++++
T Consensus 256 e~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLDL--KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcCC--CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCC
Confidence 344455543 34568999999999999888875 488898887655443322 222234567888888888888889
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|+|..+++|+ .++..+++++.|+|||||.|++...
T Consensus 333 fD~I~s~~~l~h~-~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 333 FDVIYSRDTILHI-QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCccccc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999885 5689999999999999999999864
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-12 Score=123.80 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|..+..+++. .++++|+|+.++..+..+..... ..++.+.+.++..+|++ .+|+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 4458999999999998887751 58999999988866665554322 12467777888777764 499999999
Q ss_pred cccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 175 CLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++++.++. ..+++++.++|||||.|+++.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 987765433 689999999999999999975
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=121.87 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=79.6
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHA 421 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~ 421 (506)
++..+...+..+|||+|||+|.++..|++.. ...+|+++|.++.|++.|.++.- .+.....++..+ +++||+|++
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~--~~~~~~~d~~~~~~~~~fD~v~~ 99 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP--DCQFVEADIASWQPPQALDLIFA 99 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC--CCeEEECchhccCCCCCccEEEE
Confidence 3444444556789999999999999998752 23589999999999999988731 111112333322 379999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.+|++.. +...+|.++.|+|||||.+++.-
T Consensus 100 ~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 100 NASLQWLP---DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccChhhCC---CHHHHHHHHHHhcCCCcEEEEEC
Confidence 99998544 67889999999999999999963
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.7e-13 Score=110.46 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=58.3
Q ss_pred EeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--c----ceeccccccCCCC-C-CceeEEEEccccccc
Q 010592 357 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--I----GIYHDWCEAFSTY-P-RTYDLIHAHGLFSLY 428 (506)
Q Consensus 357 LD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~----~~~~~~~~~~~~~-p-~s~Dlv~~~~~~~~~ 428 (506)
||+|||+|.++..+.+.. ...+++++|.|+.|++.+++|-- . .....-..+.... + ++||+|++.++|+|.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998763 45899999999999977766621 1 1111111222222 2 599999999999966
Q ss_pred cCcCCHHHHHHHHhhhccCCcEE
Q 010592 429 KDKCNIEDILLEMDRILRPEGAI 451 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ 451 (506)
.++..+|..+.++|||||.|
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 68899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=129.14 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=84.4
Q ss_pred HHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCcee
Q 010592 338 VNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYD 417 (506)
Q Consensus 338 v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D 417 (506)
...+..++..+...+..+|||+|||+|+++..+++.. ...|+++|.|++|++.|.++.--..+...+.++...+++||
T Consensus 153 ~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD 230 (383)
T PRK11705 153 EAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFD 230 (383)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCC
Confidence 3344444444444455689999999999999998752 24899999999999999887421112223344444568999
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|++..+|.|.. ..+++.++.++.|+|||||+++|.+
T Consensus 231 ~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 231 RIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999998888654 2356789999999999999999953
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=123.58 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=77.3
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
.+|||+|||+|.++.+|++. .|+++|+++.++..+. +.+...++++.+.+.|....++ +++||+|+++.+++++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 38999999999999999987 4889999887665433 4455566677777777766555 678999999998877543
Q ss_pred -ChHHHHHHHHHhcCCCeEEEEE
Q 010592 182 -NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 182 -~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+...+++++.++|+|||++++.
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 2378999999999999997764
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=119.02 Aligned_cols=99 Identities=23% Similarity=0.263 Sum_probs=78.6
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~-~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|.++..+++. .++++|+++.++ +.+.++. ....+...|...+++++++||+|+++.+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-----AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-----HHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 458999999999999999876 368888866444 3333322 245677788888888889999999999885
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ ..++..++.++.++|+|||.+++..+..
T Consensus 110 ~-~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 110 W-CDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred h-ccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 5 5678899999999999999999987544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=114.10 Aligned_cols=108 Identities=25% Similarity=0.332 Sum_probs=82.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC-CCCCCCe
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-PYASRAF 167 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l-p~~~~sf 167 (506)
+.|++++ . ++.+|||+|||.|.+..+|.+. ++.+.++ +++.+.+..+.++|+++.....+. .| .|++++|
T Consensus 5 ~~I~~~I--~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sF 76 (193)
T PF07021_consen 5 QIIAEWI--E--PGSRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSF 76 (193)
T ss_pred HHHHHHc--C--CCCEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCc
Confidence 4567777 2 3459999999999999999884 6666665 555677788888998765543333 44 4899999
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010592 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
|.|+++.++.+. .++..+|+|+.|+ |...+++.|+..+
T Consensus 77 D~VIlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVsFPNFg~ 114 (193)
T PF07021_consen 77 DYVILSQTLQAV-RRPDEVLEEMLRV---GRRAIVSFPNFGH 114 (193)
T ss_pred cEEehHhHHHhH-hHHHHHHHHHHHh---cCeEEEEecChHH
Confidence 999999999774 5688999999777 6688888877743
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=122.08 Aligned_cols=122 Identities=13% Similarity=0.046 Sum_probs=90.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCCCCCceeEEEEcccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
..+|||+|||+|.++..+++.. ...+|+++|.+++|++.|.++.. +...+.-.++++..+++||+|.++.++++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~- 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW- 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-
Confidence 4589999999999988887631 12589999999999999988632 122222223344444899999998888844
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------hhHHHHHHHHhcCCceEEEee
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIRDEV-----------------DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------~~~~~~~~~~~~~~w~~~~~~ 478 (506)
.+.+.+|.|+.|+|||||.++|.+.. ...+++.+++++.+|+...+.
T Consensus 192 --~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 192 --PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred --CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 46778999999999999999886421 135788899999999865443
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-12 Score=123.74 Aligned_cols=103 Identities=7% Similarity=0.081 Sum_probs=78.6
Q ss_pred CceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCC-CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|..+..|++. .....+|+++|.|++|++.|.++- ....+...+.++..+| ..+|+|.++.+|+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 457999999999998888652 112368999999999999998862 2223333455666655 6799999988887
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+.. ..+...++.+|.|+|||||.|++.|.
T Consensus 137 ~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 137 FLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 654 23457899999999999999999874
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-12 Score=114.45 Aligned_cols=101 Identities=20% Similarity=0.312 Sum_probs=78.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC----CceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP----RTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p----~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|++.-....+++++|.+++|++.|.++ ++. .++..++++..++ +.||+|++..+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcCc
Confidence 45799999999999999994211135799999999999999884 332 3444445555544 78999999988
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+. +..++..+|+++.|.|||||.+++.+..
T Consensus 83 l~---~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LH---HFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GG---GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hh---hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 86 4457788999999999999999998876
|
... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=110.75 Aligned_cols=140 Identities=14% Similarity=0.223 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc
Q 010592 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE 407 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~ 407 (506)
..|++++..-..+...+. ..+|||+|||+|.++..|+... ...+|+++|.+++|++.+.+. |+ ..+...+.
T Consensus 25 ~~~~~~~~d~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD---GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEec
Confidence 466666654433333343 4689999999999888876532 125799999999998866543 43 12333334
Q ss_pred cCCCC--CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhc---CCceEEEeecCCC
Q 010592 408 AFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGG---MRWDTKMVDHEDG 482 (506)
Q Consensus 408 ~~~~~--p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~---~~w~~~~~~~~~~ 482 (506)
++..+ +++||+|.|.. + .+++.++.++.|+|||||.+++.+......++..+.+. .+.+..-.+.-++
T Consensus 100 d~~~~~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 100 RAEDFQHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred chhhccccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 44443 38999999854 2 35678999999999999999998877766666666555 5666444443344
Q ss_pred C
Q 010592 483 P 483 (506)
Q Consensus 483 ~ 483 (506)
|
T Consensus 173 ~ 173 (181)
T TIGR00138 173 P 173 (181)
T ss_pred C
Confidence 4
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=115.47 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+.+|||||||+|.++..|++. .++++|+|+.++ +.|+++.....+.+.++.. |+++++||+|+++.+++|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-----~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-----EKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-----HHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence 458999999999999998765 377887776544 4555443445566677766 888999999999999998
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 179 WGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.++. ..+++++.|++ ++++++..
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 75433 78999999997 56777754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=120.71 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|..+..++.. .++++|+++.++..+..... ..+. .+.+...+...+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~-~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR-KAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH-HcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 4569999999999877665543 38899998877655543332 3333 466777888889998889999999988
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++ ..+...+++++.++|||||+|+++.
T Consensus 156 ~~~-~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INL-SPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccC-CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 755 5667899999999999999999975
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=118.01 Aligned_cols=118 Identities=16% Similarity=0.260 Sum_probs=89.2
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~~~~~ 428 (506)
+|||+|||+|.++..+++.. ...+|+++|.|++++..+.++ |+...+.....++.. ++++||+|++..+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 69999999999999998752 125799999999999988875 332222222333322 35899999999999855
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEE
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~ 476 (506)
.+...+|.++.|+|||||++++.+... ...++.+++.+.++++..
T Consensus 81 ---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 81 ---KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred ---CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 457889999999999999999976421 356788888999999653
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-12 Score=119.92 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=78.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceec--ccc---ccCCCCCCceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH--DWC---EAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~--~~~---~~~~~~p~s~Dlv~~~~~~~~ 427 (506)
..+|||+|||-|.++..|+..| .+|+++|+++.++++|..+.....+. +.+ |++..--.+||+|.|..|++
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE- 135 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE- 135 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH-
Confidence 4579999999999999999988 79999999999999998664322111 212 22222226999999999998
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
|..+++.++.+..+.+||||.+++++.+
T Consensus 136 --Hv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 136 --HVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred --ccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 5668888999999999999999997653
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-11 Score=115.62 Aligned_cols=117 Identities=23% Similarity=0.324 Sum_probs=87.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
..+.+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+... .........+...|...+
T Consensus 5 ~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 5 RRYRARTFELLAVQ--PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccC
Confidence 34445566666543 3459999999999999988764 478888877555433322 112234567777788888
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++++||+|++..+++|+ .++..+++++.++|||||++++..+.
T Consensus 82 ~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8888999999999998775 56889999999999999999998653
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=109.54 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=84.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|..+..++.. .++++|+++.++..+... +.+.+. ++.+...+...++. .++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 568999999999988888753 589999988777555433 333444 36777778777776 679999999642
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeec
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 242 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~ 242 (506)
.+...+++++.++|||||++++..... ....++++++..+|...
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEe
Confidence 345789999999999999999986433 12236666666677643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-11 Score=118.44 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=73.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCe--EEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLW--VMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~--~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~ 428 (506)
...+|||+|||+|.++..|++.... ...|+++|.|++|+..|.++.. +.....-.+.+|+-+++||+|.+.. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~--~-- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIY--A-- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEec--C--
Confidence 3467999999999999998764211 1478999999999999988742 2222211234554458999999732 1
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHH
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKI 466 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~ 466 (506)
+..+.|+.|+|||||+|++..... ...+++.+
T Consensus 161 ------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 125789999999999999976543 33445444
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=118.88 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..++++ .++++|+++.++..+..+..... ..++.+...|...++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 4458999999999999888763 48899998877765554433211 23567788888888765 489999999
Q ss_pred cccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 175 CLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++++.+ +...+++++.++|||||.|+++.+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9877543 237899999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=116.77 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=75.9
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH------------HcCCCeEEEEeccccCCCC-CCCe
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL------------ERGVPAVIGVLGTIKMPYA-SRAF 167 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~------------~~~~~~~~~~~d~~~lp~~-~~sf 167 (506)
+.+|||+|||.|..+.+|+++| |+++|+|+..+..++.+... .++..+.+.++|...++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 4589999999999999999995 88899988666533221100 0233567778888777643 4579
Q ss_pred eEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 168 DMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
|.|+...+++|+.++. ..+++.+.++|||||++++.
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9999988888876555 67999999999999986665
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=120.83 Aligned_cols=104 Identities=8% Similarity=0.090 Sum_probs=78.6
Q ss_pred CCceEEeecCcccHHHHHHHhCC-CeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~-~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|.++..|++.. ....+++++|.|++|+..|.++ +....+...+.++..++ ..+|+|.++.++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 34579999999999998887641 1236899999999999999876 21112233345665555 679999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++.. ..+...+|.++.|+|||||.++|.|.
T Consensus 133 ~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 133 QFLP-PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7543 22467899999999999999999875
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-11 Score=115.59 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=85.7
Q ss_pred hcchhhccCCeEEcCCCCCCChhhHHHHHHHHHhhCCC-CCC----CCCEEEEECCCCChhHHHHhhCC--cEEEecCcc
Q 010592 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI-KNG----TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPR 133 (506)
Q Consensus 61 ~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~l~~-~~~----~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~ 133 (506)
...||+.++.+-.++.-.. .......+-+.+..+. .++ -+++|||+|||+|.++..|++.+ |+++|++..
T Consensus 46 a~~wwd~~g~~~~Lh~mn~---~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~ 122 (282)
T KOG1270|consen 46 AFTWWDEEGVRHPLHSMNQ---TRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDD 122 (282)
T ss_pred cccccccccchhhhhhccc---hhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEeecccHH
Confidence 3468886665554443222 1112222334444422 122 14789999999999999999985 666666654
Q ss_pred chHHHHHHHHHHc--CCC----eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 134 DSHEAQVQFALER--GVP----AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 134 di~~~~~~~a~~~--~~~----~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++..+........ ..+ ..+.+.+.+.+ .+.||.|+|+.+++|. .++..++..+.+.|||||.+++++-..
T Consensus 123 ~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV-~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 123 MVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHV-KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHH-hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 4433332211100 001 11222222322 3459999999999994 678999999999999999999987443
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=108.39 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=89.9
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccc-eeccccccCC-CCCCceeEEEEccccccccC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIG-IYHDWCEAFS-TYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~-~~~~~~~~~~-~~p~s~Dlv~~~~~~~~~~~ 430 (506)
.+|||+|||+|.++..++..+. .|+++|.+++|++.+.++- ..+ .....+.++. ..+++||+|.++.-+.+...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcc
Confidence 5699999999999999998753 8999999999999887751 000 1111122322 23479999999877653321
Q ss_pred c------------------CCHHHHHHHHhhhccCCcEEEEEeChhh-HHHHHHHHhcCCceEEEeecC
Q 010592 431 K------------------CNIEDILLEMDRILRPEGAIIIRDEVDE-IIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 431 ~------------------~~~~~~l~e~~RvLrPgG~~ii~d~~~~-~~~~~~~~~~~~w~~~~~~~~ 480 (506)
. ..++.+|.++.|+|||||.+++.+.... ..++..++++.+|...+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEe
Confidence 1 1146789999999999999999776543 678888899999997765443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-11 Score=115.02 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=79.8
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--Cccceecccccc---CCCCCCceeEEE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--GLIGIYHDWCEA---FSTYPRTYDLIH 420 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r--g~~~~~~~~~~~---~~~~p~s~Dlv~ 420 (506)
..+......+|||+|||+|.++..+++......+++++|.+++++..+.++ +....+.....+ ++..+.+||+|+
T Consensus 13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 92 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVR 92 (241)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEE
Confidence 344445567899999999999999987421235899999999999999887 221222222233 332338999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+..+|.+. .++..++.++.++|||||++++.+
T Consensus 93 ~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 93 SDRVLQHL---EDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred Eechhhcc---CCHHHHHHHHHHHhcCCcEEEEEe
Confidence 99998844 467889999999999999999865
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-11 Score=120.28 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+..+.. ...+.+...|...+++++++||+|+++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 3458999999999988888763 48889998766654443321 1235667788888999999999999999887
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++ +++..+++++.|+|||||.+++..+
T Consensus 190 ~~-~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 190 YW-PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hC-CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 75 5678899999999999999988653
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.9e-11 Score=111.65 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc-ccCC--CCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMP--YASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~-~~lp--~~~~sfDlV~~~~ 174 (506)
.+.+|||+|||+|.++..+++. .++++|+++.++..+..+.......++.+.+.|+ ..++ +++++||+|++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 3458999999999999998764 4899999997776555443332223467788887 6666 7788999999976
Q ss_pred cccccCC--------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 175 CLIPWGA--------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l~~~~~--------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. +|.. ....+++++.++|||||+|+++.+..
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 54 3322 13678999999999999999987544
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=109.10 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=76.7
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceecccccc---CCCCCCceeEEEEcccc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEA---FSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~---~~~~p~s~Dlv~~~~~~ 425 (506)
..+..+|||+|||+|.++..+++......+++++|.++.++..+.++.. ....+..+.+ ++..+++||+|+++.++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 3356689999999999999998764212479999999999998887642 1111112233 33223789999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+ +..++..+|+++.++|||||++++.+
T Consensus 117 ~---~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 R---NVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred C---CcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 7 44578899999999999999999854
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=112.77 Aligned_cols=104 Identities=12% Similarity=0.213 Sum_probs=74.9
Q ss_pred CCCCCceEEeecCcccHHHHHHHhC---CCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCCCCCceeEEEEc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYPRTYDLIHAH 422 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~---~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~~p~s~Dlv~~~ 422 (506)
...+..+|||+|||+|.++..|++. .....+|+++|.+++|++.|.++.. +.....-++.++..+++||+|.|+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 3345668999999999998888641 1223689999999999999988732 111111234555545899999999
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+|+|..+. ++..+|.||.|++| |.++|.|
T Consensus 137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 999866532 35689999999999 5666654
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.8e-11 Score=110.37 Aligned_cols=120 Identities=18% Similarity=0.260 Sum_probs=85.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH----HHHhcCccceeccccccCCC--CCCceeEEEEcc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCEAFST--YPRTYDLIHAHG 423 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~~~~~~~~~~~~--~p~s~Dlv~~~~ 423 (506)
.-+..++||+|||.|+-+.+|+++| .+|+++|.|+..++ +|.++++. ++.++.++.. +++.||+|.+..
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~ 102 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTV 102 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEES
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEE
Confidence 3345589999999999999999998 68999999987776 34445552 3333455544 348999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEe-----Ch------h---hHHHHHHHHhcCCceEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-----EV------D---EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-----~~------~---~~~~~~~~~~~~~w~~~~~ 477 (506)
+|.++. +..++.++..|..-|+|||+++|.. .. + ...+|...+. .|++...
T Consensus 103 v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 103 VFMFLQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp SGGGS--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred EeccCC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 887665 6688999999999999999998831 11 1 3367888777 5997643
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-11 Score=117.04 Aligned_cols=129 Identities=18% Similarity=0.284 Sum_probs=96.0
Q ss_pred Chhhhhhhhh-hhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cC
Q 010592 323 SAESYQEDSN-KWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RG 397 (506)
Q Consensus 323 ~~~~f~~d~~-~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg 397 (506)
+..+|+..+. .=......+..++..+.-.+..+|||+|||.|+++.++++.- ..+|+++++|++++..+.+ +|
T Consensus 42 scayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g 119 (283)
T COG2230 42 SCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG 119 (283)
T ss_pred eeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC
Confidence 3444444442 223344455555555666667889999999999999999861 3699999999999987766 46
Q ss_pred ccceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 398 LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 398 ~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+...++-.-++...+++.||-|.|..+|+|... ....+.+.-++++|+|||.+++-
T Consensus 120 l~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 120 LEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred CCcccEEEeccccccccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 653444344566667777999999999998873 46788999999999999999983
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-11 Score=127.48 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=79.5
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
+.+|||||||+|.++..+++. .++++|+|+.++..+..+. ...+.+..+.++|...+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 458999999999998888764 5899999887776554332 233455667777887787 788999999999888
Q ss_pred cccC------------CChHHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWG------------ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~------------~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++. .+...+|+++.++|||||.+++..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7652 134789999999999999999975
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=113.99 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=93.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~ 432 (506)
..+|||+|||+|.++.+++..+. ..|+++|.++.|++.|.++.-.....+. -.+..-+.+||+|+|+... .
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~-~~~~~~~~~fD~Vvani~~------~ 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELN-VYLPQGDLKADVIVANILA------N 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCce-EEEccCCCCcCEEEEcCcH------H
Confidence 46899999999999888877653 3599999999999998876311111000 0111111379999985322 2
Q ss_pred CHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 433 NIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.+..++.++.|+|||||++++++... ..+.+.+.+++.+|++...... +.+..++++|+
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~~ 250 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKKK 250 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEeC
Confidence 34678999999999999999997654 5677888899999997654443 36888888874
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-11 Score=117.48 Aligned_cols=133 Identities=12% Similarity=0.107 Sum_probs=88.2
Q ss_pred hhhhhhhhhhhHHHHHHHHH-HhhhcCCCCCceEEeecCcccH----HHHHHHhCC----CeEEEEeecCCCcccHHHHH
Q 010592 324 AESYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGG----FAAAIQSSK----LWVMNVVPTLADKNTLGVIY 394 (506)
Q Consensus 324 ~~~f~~d~~~W~~~v~~y~~-~~~~~~~~~~r~vLD~gcG~G~----~~~~l~~~~----~~~~~v~~~d~~~~~l~~~~ 394 (506)
...|-.|...|+........ +......++..+|+|+|||||. +|..|++.. .+...|+++|+|+.||+.|.
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 44577777888876554322 2222222334689999999996 454554421 23578999999999999998
Q ss_pred hcCc--------c----------------------ceeccccccCCC--C-CCceeEEEEccccccccCcCCHHHHHHHH
Q 010592 395 ERGL--------I----------------------GIYHDWCEAFST--Y-PRTYDLIHAHGLFSLYKDKCNIEDILLEM 441 (506)
Q Consensus 395 ~rg~--------~----------------------~~~~~~~~~~~~--~-p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~ 441 (506)
+.-. . ..+.....++.. + ++.||+|+|.++|.+.. ..+...++.++
T Consensus 150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l 228 (264)
T smart00138 150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRF 228 (264)
T ss_pred cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHH
Confidence 6411 0 011111222222 2 38999999999998553 23456899999
Q ss_pred hhhccCCcEEEEEeCh
Q 010592 442 DRILRPEGAIIIRDEV 457 (506)
Q Consensus 442 ~RvLrPgG~~ii~d~~ 457 (506)
+|+|||||+|+|....
T Consensus 229 ~~~L~pGG~L~lg~~E 244 (264)
T smart00138 229 AEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHhCCCeEEEEECcc
Confidence 9999999999996554
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.5e-11 Score=117.79 Aligned_cols=121 Identities=15% Similarity=0.071 Sum_probs=85.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccc---cCCCCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCE---AFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~---~~~~~p~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|..+..++..-....+|+++|.+++|++.|+++.- +..+..... .++..+++||+|+++.++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 35689999999998766555421112479999999999999987521 111222223 333334799999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------------hhHHHHHHHHhcCCceEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------~~~~~~~~~~~~~~w~~~ 475 (506)
++ ..+...+|.|+.|+|||||+|+|.|.. ....++.++++..++...
T Consensus 157 ~~---~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 157 NL---SPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred cC---CCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 74 346788999999999999999997531 023467777888888754
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-10 Score=106.40 Aligned_cols=118 Identities=18% Similarity=0.167 Sum_probs=87.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCCCceeEEEEc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYPRTYDLIHAH 422 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p~s~Dlv~~~ 422 (506)
+......+|||+|||+|.++..++... ...+|+++|.++.|++.+.++ ++ ..+...+.+.. .+++.||+|++.
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~~~~~D~v~~~ 104 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIELPGKADAIFIG 104 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhcCcCCCEEEEC
Confidence 333345689999999999999887753 235899999999999988763 22 12222233332 245789999985
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEe-ChhhHHHHHHHHhcCCce
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w~ 473 (506)
... ..+..++.++.++|||||++++.+ ..+...++.+++++.+|.
T Consensus 105 ~~~------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 105 GSG------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred CCc------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 443 246779999999999999999976 445677888899999985
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.8e-12 Score=104.57 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=67.9
Q ss_pred EEeecCcccHHHHHHHhCC--CeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCC---CceeEEEEccc-ccc
Q 010592 356 IMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYP---RTYDLIHAHGL-FSL 427 (506)
Q Consensus 356 vLD~gcG~G~~~~~l~~~~--~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p---~s~Dlv~~~~~-~~~ 427 (506)
|||+|||+|..+..+.+.- .....++++|.+++||..+.++.- -..++..+.++..++ ++||+|.|+.. |.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998642 112689999999999999998862 113333455555544 79999999554 776
Q ss_pred ccCcCCHHHHHHHHhhhccCCc
Q 010592 428 YKDKCNIEDILLEMDRILRPEG 449 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG 449 (506)
.+...++.+|.++.++|||||
T Consensus 81 -~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 -LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -SSHHHHHHHHHHHHHTEEEEE
T ss_pred -CCHHHHHHHHHHHHHHhCCCC
Confidence 445578899999999999998
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=106.52 Aligned_cols=150 Identities=14% Similarity=0.192 Sum_probs=99.7
Q ss_pred CCChhhhhh--hhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--
Q 010592 321 GVSAESYQE--DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-- 396 (506)
Q Consensus 321 ~~~~~~f~~--d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-- 396 (506)
|+.-..|.. +...++..++.- .+..+......+|||+|||+|.++..++..-....+|+++|.++.|++.+.++
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~--~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~ 86 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRAL--ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE 86 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHH--HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 444555654 335676666431 22334444556899999999999887765311235899999999999987654
Q ss_pred --CccceeccccccCC----CCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhc
Q 010592 397 --GLIGIYHDWCEAFS----TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGG 469 (506)
Q Consensus 397 --g~~~~~~~~~~~~~----~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~ 469 (506)
|+...+...+.++. .++..||.|++.. ....+..+|.++.|+|||||++++. -..+.+.++...++.
T Consensus 87 ~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 87 KFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred HhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 32222222233332 2347899999843 1236788999999999999999983 344566778888888
Q ss_pred CCceEEEee
Q 010592 470 MRWDTKMVD 478 (506)
Q Consensus 470 ~~w~~~~~~ 478 (506)
++++..+.+
T Consensus 161 ~g~~~~~~~ 169 (198)
T PRK00377 161 IGFNLEITE 169 (198)
T ss_pred cCCCeEEEE
Confidence 888755443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-10 Score=125.02 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=86.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccC----CCCCCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAF----STYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~----~~~p~s~Dlv~~~~ 423 (506)
.++|||+|||+|+|+.+++..|. ..|+++|.|+.+++.|.+. |+. ..+...+.+. ..+.++||+|.++-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999998753 3699999999999988774 221 1122223332 12357899999952
Q ss_pred -ccccccC-------cCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC
Q 010592 424 -LFSLYKD-------KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 424 -~~~~~~~-------~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.|..... ..+...++....++|+|||.+++...........+.+...++.+.++...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAK 681 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecC
Confidence 1111100 11235688888999999999999765554444567778889998876543
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=109.40 Aligned_cols=139 Identities=12% Similarity=0.034 Sum_probs=86.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----C-ccceeccccccC--CCCCCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----G-LIGIYHDWCEAF--STYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g-~~~~~~~~~~~~--~~~p~s~Dlv~~~~ 423 (506)
.+..+|||+|||+|.++..|++... ...|+++|.++.|++.+.++ . +.....+..+.. ..++.+||+|.+..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECC
Confidence 3446899999999999999988522 34799999999998854333 1 111221111100 11347799998621
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEE------EeChh----hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIII------RDEVD----EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii------~d~~~----~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
. +......+|.|+.|+|||||.++| .|... ..++..+.+++.+++......-..-..+.+.++++
T Consensus 150 ~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 150 A-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred C-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 1 111223468999999999999999 34321 22334577888899855332221111357788877
Q ss_pred ec
Q 010592 494 KQ 495 (506)
Q Consensus 494 k~ 495 (506)
|+
T Consensus 225 ~~ 226 (226)
T PRK04266 225 KK 226 (226)
T ss_pred cC
Confidence 64
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-11 Score=112.54 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=87.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCC-C-CCceeEEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FST-Y-PRTYDLIHA 421 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~-~-p~s~Dlv~~ 421 (506)
...+|||+|||+|.++..|++.. ...+|+++|.+++|++.|.++ ++ ..+...+.+ ++. + +++||+|.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEE
Confidence 35689999999999999997742 235899999999999988764 22 112222233 331 4 489999998
Q ss_pred cccccccc-----CcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhcCCceEEE
Q 010592 422 HGLFSLYK-----DKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 422 ~~~~~~~~-----~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
........ .+.....+|.++.|+|||||.|+|. +.......+.+.+.+.+|.+..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 54332111 1123578999999999999999996 5556778888888889998663
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-11 Score=113.97 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=80.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c----cc----eeccccccCCCCCCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L----IG----IYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~----~~----~~~~~~~~~~~~p~s~Dlv~~~~ 423 (506)
.++|||+|||+|-+...|+.-| .+|+++|++.+|+++|.++- . .+ .+...|++.+..-..||.|.|+-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 4679999999999999999976 79999999999999999873 1 12 13334555555557899999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++ |..++..++.-+-+.|||||.++|++.
T Consensus 167 vle---HV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 VLE---HVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHH---HHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 888 555888899999999999999999764
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-11 Score=110.29 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=99.7
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccCCCCCCce
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFSTYPRTY 416 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~~~~p~s~ 416 (506)
..++..|.....++|.|+|||+|...+.|+++ .....++++|.|++||+.|.+|.. .+.++.|+ .+..+
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-----p~~~~ 93 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-----PEQPT 93 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-----CCCcc
Confidence 34566788888999999999999999999886 335789999999999999999874 34555555 13889
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe--Ch--hhHHHHHHHHhcCCceEEE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD--EV--DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--~~--~~~~~~~~~~~~~~w~~~~ 476 (506)
|+++++.+|..+.++ ..+|..+---|.|||.|.+.- .. +.-..|++.++..-|...+
T Consensus 94 dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l 154 (257)
T COG4106 94 DLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQEL 154 (257)
T ss_pred chhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhh
Confidence 999999999988766 447888888899999999952 22 3567788888888887543
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.5e-10 Score=107.00 Aligned_cols=101 Identities=22% Similarity=0.205 Sum_probs=75.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccC---CCCCCceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF---STYPRTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~---~~~p~s~Dlv~~~~~ 424 (506)
+..+|||+|||+|.++..++.......+++++|.++.+++.+.++. +...+.....++ +.-+++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 4468999999999999988875421368999999999999888762 111121122233 222379999999888
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+. +..++..+|.++.++|+|||.+++.+
T Consensus 131 l~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LR---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cc---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 76 45578899999999999999999854
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=111.50 Aligned_cols=122 Identities=9% Similarity=0.184 Sum_probs=92.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----cceeccccccCCCCCCceeEEEEcccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~ 427 (506)
+..+|||+|||+|.++..|++.+ ..|+++|.+++|+..|.++.. ...+...+.++...+++||+|.+..++.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45689999999999999999865 479999999999999988731 11233345666666699999999888875
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------hHHHHHHHHhcCCceEEEe
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
.. ..++..++.++.|+++|++++.+..... ..+++.++++.++|++...
T Consensus 132 ~~-~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 132 YP-ASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVRE 204 (219)
T ss_pred CC-HHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeee
Confidence 53 3457789999999999988887743211 3466788888888886543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=119.83 Aligned_cols=114 Identities=23% Similarity=0.413 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc--CCCeEEEEe
Q 010592 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER--GVPAVIGVL 155 (506)
Q Consensus 81 f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~--~~~~~~~~~ 155 (506)
+.......++.+.+.+... ++.+|||||||+|.++..+++. .|+++|+|+.++ +.+.++ +..+.+...
T Consensus 148 L~~Aq~~k~~~l~~~l~l~--~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-----~~A~~~~~~l~v~~~~~ 220 (383)
T PRK11705 148 LEEAQEAKLDLICRKLQLK--PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-----KLAQERCAGLPVEIRLQ 220 (383)
T ss_pred HHHHHHHHHHHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHHHhccCeEEEEEC
Confidence 4444455566777777554 3459999999999999999875 377777776544 344332 344555555
Q ss_pred ccccCCCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIKMPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~lp~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|...+ +++||.|++..+++|... +...+++++.++|||||++++..
T Consensus 221 D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 221 DYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred chhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 65544 468999999998888643 23789999999999999999975
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-10 Score=110.94 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=76.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+ ....++++|.++.++..+.++.. +..+..-.+.++..+++||+|+++.++++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc--
Confidence 3579999999999999998864 23568999999999998888742 111211123444445899999999888743
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.++..+|.++.|+|||||.+++.+.
T Consensus 112 -~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 112 -DDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred -cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4678899999999999999999653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.6e-11 Score=126.25 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=76.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccCCC-C-CCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFST-Y-PRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~~~-~-p~s~Dlv~~~~~~ 425 (506)
..+|||+|||+|.++..|++.. ...+|+++|.|+.|++.|.++.. +..+..-+.+++. + +++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 4689999999999988887642 34699999999999999887621 1111111233442 3 4899999998888
Q ss_pred ccccC----------cCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 426 SLYKD----------KCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~----------~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++.. ..++..+|.++.|+|||||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 75421 23567899999999999999999884
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=111.92 Aligned_cols=109 Identities=25% Similarity=0.318 Sum_probs=78.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHc-CCCe--EEEEeccccCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALER-GVPA--VIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~-~~~~--~~~~~d~~~lp~~ 163 (506)
+.+...++ +-.+++|||||||.|+++-.++.+| |+++|.++ ....+.++.++- +... ...-..++.+|.
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~--lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP--LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh--HHHHHHHHHHHHhCCCccEEEcCcchhhccc-
Confidence 34444442 3356799999999999999999885 55555544 334444444332 2222 222246788887
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++||+|+|..+|.| ..+|-..|.++...|+|||.+++.+
T Consensus 180 ~~~FDtVF~MGVLYH-rr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYH-RRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cCCcCEEEEeeehhc-cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 789999999999999 4678999999999999999999853
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=105.45 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=79.3
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----c--cceeccccccCCCCC-CceeEEEEc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----L--IGIYHDWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----~--~~~~~~~~~~~~~~p-~s~Dlv~~~ 422 (506)
..-..||.+|||||.--.++-..+ .-.|+.+|.+++|-+++..+- + ...++.-.|.++.++ .|||.|.|.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p--~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~T 152 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKP--INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCT 152 (252)
T ss_pred cCccceEEecccCCCCcccccCCC--CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEE
Confidence 334468999999998766665433 367999999999999776542 1 124455567888776 999999998
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.++. ...++..+|.|+.|+|||||.+++-+..
T Consensus 153 lvLC---Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 153 LVLC---SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEe---ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8887 6678899999999999999999996543
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-10 Score=106.29 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=76.3
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC---CCCCCeeEEEEcCc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP---YASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp---~~~~sfDlV~~~~~ 175 (506)
..+|||||||+|.++..++.+ .++++|+++.++..+..+.......++.+...|+..++ +++++||.|++++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 348999999999999999876 58999998877755554443332224677777776543 55679999998765
Q ss_pred ccccCCCh--------HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 176 LIPWGAND--------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~~~~--------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
. +|.... ..+++++.++|||||.|++.+..
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3 443321 47899999999999999998643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=112.68 Aligned_cols=123 Identities=17% Similarity=0.183 Sum_probs=78.7
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEE
Q 010592 78 GTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGV 154 (506)
Q Consensus 78 ~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~ 154 (506)
+..|+.|.........+.+.....++.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...+.......
T Consensus 135 g~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n-~~~n~~~~~~~~ 213 (288)
T TIGR00406 135 GLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN-AELNQVSDRLQV 213 (288)
T ss_pred CCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCcceEE
Confidence 3445555544443333333211224569999999999998888765 489999998776555443 333444322222
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
......+...++||+|+++.... ....++.++.++|||||+|++++.
T Consensus 214 ~~~~~~~~~~~~fDlVvan~~~~----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 214 KLIYLEQPIEGKADVIVANILAE----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EecccccccCCCceEEEEecCHH----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 11112334467899999976432 236789999999999999999864
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=110.88 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=73.3
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH------------HcCCCeEEEEeccccCCCC-CCCe
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL------------ERGVPAVIGVLGTIKMPYA-SRAF 167 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~------------~~~~~~~~~~~d~~~lp~~-~~sf 167 (506)
+.+|||+|||.|..+.+|+++| |+++|+|+..+..++.+... .....+.+.++|...++.. .+.|
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 4589999999999999999985 88888887655443211100 0123456677888777533 3589
Q ss_pred eEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010592 168 DMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
|+|+...+++|+.++. ..+++.+.++|+|||++++
T Consensus 118 d~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 118 DAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999988888876544 7899999999999997554
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-10 Score=96.54 Aligned_cols=109 Identities=17% Similarity=0.023 Sum_probs=74.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~-lp~~~ 164 (506)
..+.+.+... .+.+|||+|||+|.++..++++ .++++|+++..+..+..........+..+...+... ++...
T Consensus 9 ~~~~~~~~~~--~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 9 ALTLSKLRLR--PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 3344555333 2348999999999999999875 488999988766554433333222235555555543 33334
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++||.|++.....+ ...+++++.+.|||||+|++..
T Consensus 87 ~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEEEEe
Confidence 68999999765422 3689999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=115.38 Aligned_cols=103 Identities=16% Similarity=0.260 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCCh----hHHHHhhC---------CcEEEecCccchHHHHHHHH---HHcC------------------
Q 010592 102 TVRTALDTGCGVAS----WGAYLWSR---------NVIAMSFAPRDSHEAQVQFA---LERG------------------ 147 (506)
Q Consensus 102 ~~~~VLDiGCG~G~----~~~~L~~~---------~v~~vdis~~di~~~~~~~a---~~~~------------------ 147 (506)
.+.+|||+|||+|. ++..|++. .++++|+++.++..+....- .-++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999994 44444432 47888888876655543210 0000
Q ss_pred ------CCeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 148 ------VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 ------~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.+.+.|....+++.++||+|+|.++++|+.+.. ..+++++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 135677788888777788999999999998875322 689999999999999999964
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=110.22 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=79.1
Q ss_pred CceEEeecCcccHHHHHH-HhCCCeEEEEeecCCCcccHHHHHhcCccceecc------ccccCCCC--CCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAI-QSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHD------WCEAFSTY--PRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l-~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~------~~~~~~~~--p~s~Dlv~~~~ 423 (506)
-|.++|+|||+| .|+.. ++.. -+|+++|.++.||++|.+.-.+ .++. -.+.++.. ++|.|+|.|..
T Consensus 34 h~~a~DvG~G~G-qa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~-~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 34 HRLAWDVGTGNG-QAARGIAEHY---KEVIATDVSEAMLKVAKKHPPV-TYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred cceEEEeccCCC-cchHHHHHhh---hhheeecCCHHHHHHhhcCCCc-ccccCCccccccccccccCCCcceeeehhhh
Confidence 458999999999 55544 4432 5899999999999999876431 1111 11223333 79999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCc-EEEE---EeChhhHHHHHHHHhcCCce
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEG-AIII---RDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG-~~ii---~d~~~~~~~~~~~~~~~~w~ 473 (506)
.| |+++++.++.++.|||||.| .+.| +|+.....+...+..++.|.
T Consensus 109 a~----HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 AV----HWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hH----HhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 88 59999999999999999988 4444 55444445555555555554
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-10 Score=106.71 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=70.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~---~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
....++||+|||.|.++..|+.+ .++++|+++. +++.|+++ ...+.+.+.+.... .|.++||+|+++.+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~-----Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR-----ALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH-----HHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHH-----HHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 34558999999999999999998 6888988764 44455543 23477777776443 47889999999999
Q ss_pred ccccCCC--hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 176 LIPWGAN--DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~--~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++++.+. ...++..+...|+|||.|++...
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9776542 26789999999999999999753
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=109.59 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfD 168 (506)
++.+|||||||+|.++..++++ .|+++|+++ +. ....+.+.++|+...+ +.+++||
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 3458999999999999988775 388999977 11 1123567777876643 6678999
Q ss_pred EEEEcCcccccCCCh-----------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 169 MAHCSRCLIPWGAND-----------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 169 lV~~~~~l~~~~~~~-----------~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|+|+.+. ++..++ ..+|+++.++|||||.|++...
T Consensus 120 ~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 120 VVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99998755 333222 3589999999999999999753
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=110.76 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=74.5
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+|||||||+|.++..+++. .++++|+++.++..+.... ...+. .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999999988865 3778888775554433332 22333 356666777666665 58999999999877
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 179 WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+ .+...+++++.++|||||++++...
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 5 5678999999999999999999864
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-10 Score=112.90 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=84.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCC-CCCceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~-~p~s~Dlv~~~~~~~~ 427 (506)
..+|||+|||+|.++.+++..+. ..|+++|.++.|++.|.++. +.........+... .++.||+|+|+.+..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE- 236 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH-
Confidence 36899999999999988887653 48999999999999988753 21112222222222 347999999954332
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEe
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~ 477 (506)
.+..++.++.|+|||||+++++.... ..+++.+.+++. |++...
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 34678999999999999999987653 556777777776 875543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.9e-10 Score=113.34 Aligned_cols=134 Identities=14% Similarity=0.183 Sum_probs=84.8
Q ss_pred cCCeEEcCCCCCCChhhH-HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHH
Q 010592 68 EGNVFRFPGGGTQFPQGA-DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQF 142 (506)
Q Consensus 68 ~~~~~~f~~~~~~f~~~~-~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~ 142 (506)
.+..+.+.+....|.... +.-.+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++.++..+..+.
T Consensus 195 ~~~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~--~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 195 EGTDWTIHNHANVFSRTGLDIGARFFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred cCceEEEEecCCccCCCCcChHHHHHHHhCCccc--CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 334444444344444332 322344556665332 348999999999999999875 4899999886665554443
Q ss_pred HHHcCC----CeEEEEeccccCCCCCCCeeEEEEcCcccccC--C-C-hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 143 ALERGV----PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG--A-N-DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 143 a~~~~~----~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~--~-~-~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. .+. .+.+...|... .++.++||+|+|+..++.-. . + ...++.++.++|+|||.|+++..
T Consensus 273 ~~-n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 273 ET-NMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred HH-cCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 32 222 24455444422 23456899999997764321 1 1 15789999999999999999963
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.9e-10 Score=102.55 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=71.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|.++..++.. .++++|+++.++..+. +.+.+.+. ++.+...++..++ ..++||+|+|.. +.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 568999999999988887643 4899999887664433 33334444 4677777877764 357899999865 32
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+...+++.+.++|+|||.+++...
T Consensus 120 ----~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 ----SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 346788999999999999998753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-10 Score=106.15 Aligned_cols=122 Identities=17% Similarity=0.327 Sum_probs=98.5
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEc
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~ 422 (506)
+...|.++ .+|||+|||.|.+.++|.+.. .....+++.+++.+..+.+||+.-...|.-+.++.|| ++||.|..+
T Consensus 7 I~~~I~pg--srVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 7 IAEWIEPG--SRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred HHHHcCCC--CEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 34456665 579999999999999998842 3578999999999999999999777777888898888 999999998
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEE----------------------eChh------------hHHHHHHHHh
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR----------------------DEVD------------EIIKVKKIVG 468 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~----------------------d~~~------------~~~~~~~~~~ 468 (506)
..+.+.. .++.+|.||-|| |...||+ +.++ .+...+.++.
T Consensus 83 qtLQ~~~---~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 83 QTLQAVR---RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred hHHHhHh---HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 8888554 678899999877 5567773 2221 6788899999
Q ss_pred cCCceEE
Q 010592 469 GMRWDTK 475 (506)
Q Consensus 469 ~~~w~~~ 475 (506)
.+++++.
T Consensus 157 ~~~i~I~ 163 (193)
T PF07021_consen 157 ELGIRIE 163 (193)
T ss_pred HCCCEEE
Confidence 9999865
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-10 Score=106.69 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=73.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
..+|||+|||+|.++..|++.. ...+++++|.|++|++.|.++.. +...+.-... +..+++||+|.+..+|+|.. .
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-p 120 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-P 120 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-H
Confidence 4579999999999999998751 12589999999999999988531 1222111112 22348999999999999764 4
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEe
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
..+..++.||.|++ +++++|.+
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 56789999999998 57888854
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-10 Score=107.69 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~ 159 (506)
+.+.+.+.+.+.++....++.+|||+|||+|.++..++.. .++++|+++.++..+..+... .+. .+.+.+.+...
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG-RDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECChhh
Confidence 3445555666666421234569999999999999999876 488999988777555444332 222 46777777776
Q ss_pred CCCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEE
Q 010592 160 MPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++ ++||+|++..+++|+.. +...+++++.+++++++++.+.
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 65 78999999988878653 2368899999999988776654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=101.42 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=70.7
Q ss_pred CCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
..+|||+|||+|.++..++++ . ++++|+++..+..+. +.+...+.. +.+...|... +.+.++||+|+|+..++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 458999999999999999986 3 889999886554443 334445555 6666666533 33478999999997653
Q ss_pred ccCCC-----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGAN-----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~-----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ..+ ...++++..+.|||||.|++...
T Consensus 110 ~-~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 A-GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp T-TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 3 222 25789999999999999988754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=111.87 Aligned_cols=143 Identities=16% Similarity=0.190 Sum_probs=94.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++.++..+..... ..++...+...|... ...+
T Consensus 186 ~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~~~~ 260 (342)
T PRK09489 186 QLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--DIKG 260 (342)
T ss_pred HHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--ccCC
Confidence 34445453221 237999999999999999875 48899998877765554433 345555555555433 2357
Q ss_pred CeeEEEEcCcccccCC----ChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceee
Q 010592 166 AFDMAHCSRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~ 241 (506)
.||+|+|+..+|.... ....+++++.+.|||||.|+++.+.. +. + . ..+++.... .+.
T Consensus 261 ~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~--l~-y------~-------~~l~~~Fg~--~~~ 322 (342)
T PRK09489 261 RFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF--LP-Y------P-------DLLDETFGS--HEV 322 (342)
T ss_pred CccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC--CC-h------H-------HHHHHHcCC--eEE
Confidence 8999999988754221 12689999999999999999987543 11 0 0 123333322 467
Q ss_pred ccccCceEEEEecC
Q 010592 242 KSEKGEIAVWQKKV 255 (506)
Q Consensus 242 ~~~~~~~~i~~kp~ 255 (506)
+.+++.+.||+-..
T Consensus 323 la~~~~f~v~~a~~ 336 (342)
T PRK09489 323 LAQTGRFKVYRAIM 336 (342)
T ss_pred EEeCCCEEEEEEEc
Confidence 77788888887543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=102.15 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=85.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-----cceeccccccCCCCC-CceeEEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-----IGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-----~~~~~~~~~~~~~~p-~s~Dlv~~ 421 (506)
+..+|||+|||+|.++..|+..+ .+|+++|.+++|+..+.++ ++ .....++.+ .++ .+||+|.+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEE
Confidence 35579999999999999998874 6899999999999988554 21 112222222 233 58999998
Q ss_pred cccccccc------------------CcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEee
Q 010592 422 HGLFSLYK------------------DKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 422 ~~~~~~~~------------------~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~ 478 (506)
+..+.... ....+..++.++.++|||||.+++.... ...+.+.+++...+|++....
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 76553210 0112456899999999999998885432 235678889999999866543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=110.86 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=75.3
Q ss_pred HHHHHHHHhhCCCC-CCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc-----CCCeEEEEecc
Q 010592 86 DKYIDQLASVIPIK-NGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGT 157 (506)
Q Consensus 86 ~~~~~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~-----~~~~~~~~~d~ 157 (506)
+..++.+.+++... ..++.+|||||||+|.++..|++++ |+++|+|+.++..+..+..... .....+.+.|.
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 44445555555322 1235699999999999999999874 8899999887765554433220 12345555565
Q ss_pred ccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 158 IKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..+ +++||+|+|..+++|+.++. ..+++.+.+ +.+||.++ +..+
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p 251 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAP 251 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCC
Confidence 433 57899999999998875543 345666664 45666544 4433
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=105.44 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=102.1
Q ss_pred CCeEEcCCCCCCChhhH-HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHH
Q 010592 69 GNVFRFPGGGTQFPQGA-DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA 143 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~~-~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a 143 (506)
+..+.|.+....|..+. +.=.+.+++.++..... +|||+|||.|.++..|++. .++-+|++...+..+..+.
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl- 202 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNL- 202 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhH-
Confidence 34455555455554433 33445566777544333 8999999999999999986 4778888765443333333
Q ss_pred HHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh----HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCC
Q 010592 144 LERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND----GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRP 219 (506)
Q Consensus 144 ~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~----~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~ 219 (506)
..++++...+..+....+..+ +||+|+|+.-+|.=..-. .+++.+..+.|++||.|.++.... +.
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~--l~-------- 271 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH--LP-------- 271 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC--CC--------
Confidence 334455423333444445555 999999998775311111 388999999999999999997632 11
Q ss_pred hHHhHHHHHHHHHHHHhcceeeccccCceEEEEec
Q 010592 220 KEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKK 254 (506)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~i~~kp 254 (506)
....|+++... -+.+.+++...|++-.
T Consensus 272 ------y~~~L~~~Fg~--v~~la~~~gf~Vl~a~ 298 (300)
T COG2813 272 ------YEKKLKELFGN--VEVLAKNGGFKVLRAK 298 (300)
T ss_pred ------hHHHHHHhcCC--EEEEEeCCCEEEEEEe
Confidence 11234444332 5667777778877653
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=112.71 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC--CCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM--PYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l--p~~~~sfDlV~~~~ 174 (506)
.+..+||||||+|.++..++.+ .++|+|+++.++..+..+.. ..++ ++.+..+|+..+ .++++++|.|++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~-~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE-LLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH-HcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3458999999999999999976 58999999877766554443 4444 466677777544 57889999999976
Q ss_pred cccccCCCh------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 175 CLIPWGAND------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~~~~~~~------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. +|.... ..++.++.|+|+|||.+.+.+.
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 53 664432 4799999999999999999764
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=104.16 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=80.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
..+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+........ ....+.+...+...++++.
T Consensus 29 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 29 RRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCC
Confidence 4445554322 4569999999999999888765 46778887644433322221 1234667777888888878
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++||+|+++.++++ ..++..+++++.++|+|||++++..
T Consensus 105 ~~~D~i~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 105 NSFDAVTIAFGLRN-VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CcEEEEEEeeeeCC-cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 89999999988866 4567899999999999999999865
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-10 Score=105.68 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=82.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-----CCC-CceeEEEEc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-----TYP-RTYDLIHAH 422 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-----~~p-~s~Dlv~~~ 422 (506)
...|||+|||+|.++..|+... ...+|+++|.++.|+..|.++ ++ ..+...+.++. .++ +++|.|+++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4579999999999999998753 236899999999999987654 22 22333333332 144 699999985
Q ss_pred ccccc-----ccCcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhcCC-ceE
Q 010592 423 GLFSL-----YKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMR-WDT 474 (506)
Q Consensus 423 ~~~~~-----~~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~-w~~ 474 (506)
.-..+ ..++...+.+|.++.|+|||||.|++. |...+.+++.+.+.... |+.
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 43221 112333467999999999999999985 55556666666655544 664
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=111.31 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=91.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEEEcccccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
.+|||+|||+|.++..+++.. ....|+++|.++.|+..|.+. ++..... +...++..++.||+|.|+.-|+...
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 469999999999999998753 235799999999999988653 3322211 1222333458999999998887432
Q ss_pred Cc--CCHHHHHHHHhhhccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 430 DK--CNIEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 430 ~~--~~~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.. ...+.++.++.|.|||||.|+|.. .+++...+++.+... ++.. +. .+.+++.|+|
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la-~~-----~~f~v~~a~~ 336 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLA-QT-----GRFKVYRAIM 336 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEE-eC-----CCEEEEEEEc
Confidence 21 234689999999999999998843 456777777776543 3222 21 3678888876
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=101.27 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=92.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc--eeccccccCCCCCCceeEEEEcccc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG--IYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~--~~~~~~~~~~~~p~s~Dlv~~~~~~ 425 (506)
+.....+-|||||||+|.-+..|.+.| ...+++|+|+.||++|.+|-+-+ ...+..+.+|+-|+|||-+.+-+++
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 444457789999999999999999987 67899999999999999864432 4455678899999999998887777
Q ss_pred ccccC---cC-----CHHHHHHHHhhhccCCcEEEEEe---ChhhHHHHHHHHhcCCce
Q 010592 426 SLYKD---KC-----NIEDILLEMDRILRPEGAIIIRD---EVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 426 ~~~~~---~~-----~~~~~l~e~~RvLrPgG~~ii~d---~~~~~~~~~~~~~~~~w~ 473 (506)
..+-| .+ .+..++.-++.+|++|+..++.= ..+.++.|..-+.+.++.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence 63321 11 12346777999999999999953 334556666666666654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=103.52 Aligned_cols=107 Identities=14% Similarity=0.056 Sum_probs=75.3
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
....+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+..+. ...+.. +.+...|....
T Consensus 60 ~~~~~~~~l~~~--~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 60 MVAMMCELIEPR--PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHhcCCC--CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccC
Confidence 445566666433 3458999999999999888753 4889999886664444333 333432 56677777654
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
....++||+|++..++.++ ..++.+.|+|||+|++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 4456789999998876443 257889999999999864
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.2e-10 Score=107.28 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
.+.+|||||||+|.++..|++. .++++|+++.++..+..... .....+.+.+...+++++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---RPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---cCCCeEEEEecccccccCCCccEEEEC
Confidence 4468999999999998888641 47888887765544332211 122344555666677778899999999
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
.+++|+.++. ..+++++.|+++ |.+++.
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 9998875432 579999999998 444444
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=104.95 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=81.3
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCC
Q 010592 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-YASR 165 (506)
Q Consensus 89 ~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp-~~~~ 165 (506)
++.+...+. ..++.+|||||||+|.++..+++. .++++|+++..+..+.... ...+....+...+....+ ..++
T Consensus 37 ~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 37 LNYIREHAG--GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHhcc--CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCC
Confidence 444555442 234568999999999999988876 4788888775554333222 223445556666665554 3457
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+++.++++. .++..+++.+.++|+|||.++++.+.
T Consensus 114 ~fD~Ii~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 114 QFDVVTCMEMLEHV-PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CccEEEEhhHhhcc-CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 89999999988774 56788999999999999999998654
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-10 Score=111.50 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=80.1
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEe
Q 010592 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVL 155 (506)
Q Consensus 79 ~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~~~~~~~ 155 (506)
-.|+.|...-....++++.....++.+|||+|||+|.++...++.| +.++|++|..+ +++.++++.++++......
T Consensus 139 lAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQAK 217 (300)
T ss_pred cccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhcc
Confidence 4566666544443444443222466799999999999988887763 88999988655 4444566666665311111
Q ss_pred ccccCCCCC-CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIKMPYAS-RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~lp~~~-~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
....+..+. +.||+|++|-.... ...+..++.+.|||||++++|+
T Consensus 218 ~~~~~~~~~~~~~DvIVANILA~v----l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 218 GFLLLEVPENGPFDVIVANILAEV----LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cccchhhcccCcccEEEehhhHHH----HHHHHHHHHHHcCCCceEEEEe
Confidence 122223333 58999999863211 2688999999999999999996
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=105.40 Aligned_cols=117 Identities=22% Similarity=0.258 Sum_probs=73.7
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEE
Q 010592 78 GTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGV 154 (506)
Q Consensus 78 ~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~ 154 (506)
+..|+.+.........+.+......+.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...++.....
T Consensus 95 ~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~- 172 (250)
T PRK00517 95 GMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY- 172 (250)
T ss_pred CCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE-
Confidence 3345555544333333333211234569999999999988887765 388999988766544433 33344421111
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++..+.+||+|+++.... ....++.++.++|||||++++++.
T Consensus 173 -----~~~~~~~fD~Vvani~~~----~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 173 -----LPQGDLKADVIVANILAN----PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred -----EccCCCCcCEEEEcCcHH----HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 122223799999975321 136789999999999999999854
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=105.48 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=78.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcc----cHHHHHhc-Cccceecccccc--CCCCCCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN----TLGVIYER-GLIGIYHDWCEA--FSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~----~l~~~~~r-g~~~~~~~~~~~--~~~~p~s~Dlv~~~~ 423 (506)
.+..+|||+|||+|.++.+|++.-.....|+++|++++ |+.++.+| .+..+..+.... +.....+||+|+++.
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 34468999999999999999985322247999999975 56677665 343444332211 111237899999855
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEE------eChh-----hHHHHHHHHhcCCceEE
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR------DEVD-----EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~------d~~~-----~~~~~~~~~~~~~w~~~ 475 (506)
. +..+...++.++.|+|||||.|+|. |... +.+++ +.+++.+++..
T Consensus 211 a-----~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~ 267 (293)
T PTZ00146 211 A-----QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPK 267 (293)
T ss_pred C-----CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceE
Confidence 3 2334456778999999999999993 2211 11234 56788888854
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-09 Score=100.89 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=79.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC----------C-CCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST----------Y-PRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~----------~-p~s~Dlv~~ 421 (506)
..+|||+|||||.++..+++.......|+++|.++ |... .++ ...+.++.. + +.+||+|.|
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v----~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGV----DFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCc----EEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 45899999999999998887643335899999985 4322 121 112233322 3 378999999
Q ss_pred ccccccccCcC-C-------HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcC--CceEE-EeecC-CCCCCCeEE
Q 010592 422 HGLFSLYKDKC-N-------IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM--RWDTK-MVDHE-DGPLVPEKI 489 (506)
Q Consensus 422 ~~~~~~~~~~~-~-------~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~--~w~~~-~~~~~-~~~~~~~~~ 489 (506)
+.+........ + .+.+|.++.|+|||||.|+|..-.. +.+.+++..+ .|... +..-. .-..+.|.+
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~ 201 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 201 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECCccccccCceeE
Confidence 76554322211 1 2469999999999999999964332 1122222222 33322 22111 112247889
Q ss_pred EEEEe
Q 010592 490 LVAVK 494 (506)
Q Consensus 490 l~~~k 494 (506)
++|+.
T Consensus 202 ~~~~~ 206 (209)
T PRK11188 202 IVATG 206 (209)
T ss_pred EEeec
Confidence 98864
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.3e-09 Score=97.62 Aligned_cols=105 Identities=17% Similarity=0.040 Sum_probs=72.4
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASR 165 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~ 165 (506)
.+.+.+... .+.+|||+|||+|.++..++++ .++++|+++.++..+..+.. ..+. .+.+...+.. .++ .+
T Consensus 22 ~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~-~~~~~~i~~~~~d~~-~~~-~~ 96 (187)
T PRK08287 22 LALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ-RFGCGNIDIIPGEAP-IEL-PG 96 (187)
T ss_pred HHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HhCCCCeEEEecCch-hhc-Cc
Confidence 344555433 3458999999999999988764 48899998876654443333 2333 3455544542 233 35
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|++..... ....++.++.++|+|||++++..
T Consensus 97 ~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 97 KADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 799999976542 24678999999999999999864
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.9e-08 Score=96.94 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=95.5
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLI 419 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~Dlv 419 (506)
++..+......+|||+|||+|-++..|++... ...++-+|.+...++.|++- ++-+.......-++...+.||+|
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~I 228 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLI 228 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEE
Confidence 33333333334899999999999999998643 56899999998888877653 22221111122233334799999
Q ss_pred EEccccccccCcCC--HHHHHHHHhhhccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 420 HAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 420 ~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.|+-=|+.-..... -..++.+-.+-|++||.|+|-- .+++...|++++. ++..+... ...+|+-++|.
T Consensus 229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k~ 300 (300)
T COG2813 229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKKA 300 (300)
T ss_pred EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEecC
Confidence 99888874332211 1368899999999999888843 4557888888776 34444333 36888888773
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-09 Score=103.48 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=81.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHH-cCCCeEEEEeccccCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~-~~~~~~~~~~d~~~lp~~ 163 (506)
..+...+... ++.+|||+|||+|.++..++.. .++++|+++..+..+....... ...++.+...+...++++
T Consensus 41 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLGVR--PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhCCC--CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 3444444322 3458999999999998888754 4788888876554444333221 123466777788778877
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++||+|+++.++++ ..+...++.++.++|+|||.+++..
T Consensus 119 ~~~~D~I~~~~~l~~-~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 119 DNSFDAVTIAFGLRN-VPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CCCccEEEEeccccc-CCCHHHHHHHHHHhccCCcEEEEEE
Confidence 789999999988866 4567899999999999999998864
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=100.29 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=74.0
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+....+...|....+ .++||+|+++..+++...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 47999999999999999887 37899998876655544433 34455666666665443 458999999987755432
Q ss_pred C--------------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 182 N--------------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 182 ~--------------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
. ...++.++.++|||||.+++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 1 146799999999999999998643
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-09 Score=105.58 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=95.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcccee----ccccccCCCCC--CceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY----HDWCEAFSTYP--RTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~----~~~~~~~~~~p--~s~Dlv~~~~~~ 425 (506)
+.++|||+|||+|-++-+.++-|. ..|+++|+.+..+++|++.-....+ +.-+-.....+ +.||+|.|+= +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 578999999999999998888763 5799999999999999885321111 11111122223 5999999922 1
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
- .-+..+..++.+.|||||++|++--+. ..+.+.+.+.+.+|++...... +.+..++.+|+
T Consensus 239 A-----~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~----~eW~~i~~kr~ 300 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER----EEWVAIVGKRK 300 (300)
T ss_pred H-----HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec----CCEEEEEEEcC
Confidence 1 123568889999999999999987654 5677888899999997755444 36888888774
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-09 Score=105.04 Aligned_cols=127 Identities=12% Similarity=0.187 Sum_probs=93.3
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHH--HHhc--Cccceeccc---cccCCCCCC
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV--IYER--GLIGIYHDW---CEAFSTYPR 414 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~--~~~r--g~~~~~~~~---~~~~~~~p~ 414 (506)
..+.+.+..-..++|||||||.|.++-+|+..|. ..|+++|.+...+-. +..+ |.-...+.. -|++|. .+
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~ 181 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG 181 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence 3445556666788999999999999999998873 579999987554332 2222 111111111 245554 58
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC------------------------hhhHHHHHHHHhcC
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE------------------------VDEIIKVKKIVGGM 470 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~------------------------~~~~~~~~~~~~~~ 470 (506)
+||+|+|.+||= |+-++...|.++...|||||.||+-.. ++.+..|+..++++
T Consensus 182 ~FDtVF~MGVLY---Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~ 258 (315)
T PF08003_consen 182 AFDTVFSMGVLY---HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERA 258 (315)
T ss_pred CcCEEEEeeehh---ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHc
Confidence 999999999998 777899999999999999999998211 23778899999999
Q ss_pred CceE
Q 010592 471 RWDT 474 (506)
Q Consensus 471 ~w~~ 474 (506)
+++-
T Consensus 259 gF~~ 262 (315)
T PF08003_consen 259 GFKD 262 (315)
T ss_pred CCce
Confidence 9973
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.9e-10 Score=110.33 Aligned_cols=121 Identities=23% Similarity=0.267 Sum_probs=81.5
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEE
Q 010592 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG 153 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~ 153 (506)
.+..|+.|.+.-....++++.....++.+|||+|||+|.++...+.. .|.++|++|..+ +.+.+++..+++...+.
T Consensus 136 Pg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 136 PGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIE 214 (295)
T ss_dssp TTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEE
T ss_pred CCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEE
Confidence 44678888866665555555322344569999999999888777765 489999998655 45555666677766554
Q ss_pred EeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 154 VLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 154 ~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.... ....+.||+|+++-.... ...++..+.+.|+|||+|++|+
T Consensus 215 v~~~~--~~~~~~~dlvvANI~~~v----L~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 215 VSLSE--DLVEGKFDLVVANILADV----LLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp ESCTS--CTCCS-EEEEEEES-HHH----HHHHHHHCHHHEEEEEEEEEEE
T ss_pred EEEec--ccccccCCEEEECCCHHH----HHHHHHHHHHhhCCCCEEEEcc
Confidence 43222 233589999999864322 2578888999999999999996
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.6e-10 Score=105.94 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=86.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh-cCcc--------------ceeccccccCCCCC----
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-RGLI--------------GIYHDWCEAFSTYP---- 413 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~-rg~~--------------~~~~~~~~~~~~~p---- 413 (506)
..+|||+|||.|..+.+|+++| .+|+++|.|+.+++.++. .|+. ..+...+.++..++
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4589999999999999999987 689999999999997544 3431 11233456665444
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE---e-Ch-----h---hHHHHHHHHhcCCceEEEeec
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR---D-EV-----D---EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~---d-~~-----~---~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.+||+|....+|.++. ...-+..+..|.+.|||||++++. . .. + ..++|.+++. -.|++...+.
T Consensus 112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence 5799999877777553 334467999999999999975552 1 11 1 4466777664 3577665543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=108.16 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=89.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCCCceeEEEEccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~ 428 (506)
..+|||+|||+|.++-+-++-|. ..|+++|.++..++.|.+-. +-..+. +..........||+|.|+-...
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~~~~~~~~~~~dlvvANI~~~-- 236 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIE-VSLSEDLVEGKFDLVVANILAD-- 236 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEE-ESCTSCTCCS-EEEEEEES-HH--
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEE-EEEecccccccCCEEEECCCHH--
Confidence 35899999999999877777663 47999999999999887752 211111 1111111239999999943332
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
-+...+..+.+.|+|||+||++--+. ..+.+.+.+++ +|++.....+ +.+..|+++|+
T Consensus 237 ----vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 ----VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp ----HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred ----HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 34568888999999999999986554 56777787877 9997655444 37999999986
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=101.80 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=75.5
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM 160 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l 160 (506)
.....+.+.+... ++.+|||||||+|+++..+++. .++++|+++.++..+..+.. ..+. ++.+...|....
T Consensus 63 ~~~~~~~~~l~~~--~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCcccC
Confidence 3445566666443 3459999999999999888754 48899998866654443333 3333 467777777665
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.+.||+|++.....+ ....+.+.|||||.|++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 556688999999765533 2356778999999999864
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-09 Score=102.20 Aligned_cols=98 Identities=14% Similarity=0.181 Sum_probs=73.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCCCceeEEEEcccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~ 427 (506)
+..+|||+|||+|.++..|++.+ ..|+++|.+++|+..|.++- +...++....+++..+++||+|++..+|.|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 35689999999999999999875 45999999999999998762 111233334556655689999999999875
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.. ...+..++.++.+++++++.+.+
T Consensus 140 ~~-~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 140 YP-QEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CC-HHHHHHHHHHHHhhcCCeEEEEE
Confidence 43 23567899999998876665554
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=111.35 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=81.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCC-CceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYP-RTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p-~s~Dlv~~~~ 423 (506)
...+||||||+|.++..|+... ...+++++|.++.|+..|.++ |+ ..+...+.+. ..++ +++|.|+++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4579999999999999999863 346899999999998877654 33 1222222222 2344 8999999853
Q ss_pred cccccc--C-cCCHHHHHHHHhhhccCCcEEEE-EeChhhHHHHHHHHhcC-CceE
Q 010592 424 LFSLYK--D-KCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 424 ~~~~~~--~-~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~-~w~~ 474 (506)
-..+.. | |-..+..|.|+.|+|||||.+.| +|..++.+.+.+.+... ++..
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 322211 1 11226899999999999999999 56666776666665444 4443
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=91.96 Aligned_cols=96 Identities=19% Similarity=0.113 Sum_probs=69.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCCCceeEEEEc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYPRTYDLIHAH 422 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p~s~Dlv~~~ 422 (506)
....+|||+|||+|.++..+++.. ...+|+++|.++.+++.+.+. ++. .+...+.+. +..+.+||.|.+.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEEC
Confidence 334589999999999999998752 126899999999999987653 221 122222222 2234799999985
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.... ....++.++.|+|||||+|++.
T Consensus 96 ~~~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 4332 3468999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=99.47 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=77.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc------CCCCC-CceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA------FSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~------~~~~p-~s~Dlv~~~~~ 424 (506)
+..+|||+|||+|+++..+++.......|+++|.++.+ ...++.....+..+. ...++ ++||+|.++..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 34689999999999988887653223479999999654 111221111121110 00134 78999998643
Q ss_pred cccccCc--------CCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeec-CCCCCCCeEEEEEE
Q 010592 425 FSLYKDK--------CNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDH-EDGPLVPEKILVAV 493 (506)
Q Consensus 425 ~~~~~~~--------~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~l~~~ 493 (506)
.+....+ ..++.+|.++.++|||||.++|.... ....++-..++..-|.+.+... ..-....|++++|.
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 2211111 12467999999999999999994322 2222233333222244433221 11222468888885
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=99.94 Aligned_cols=117 Identities=20% Similarity=0.284 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~ 157 (506)
.....+++.+.+.+. ..+.+|||+|||+|.++..+++. .++++|+++.++..+... +...+.. +.+...|.
T Consensus 71 ~~~~~l~~~~l~~~~---~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 71 PDTEELVEAALERLK---KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKN-AARLGLDNVTFLQSDW 146 (251)
T ss_pred CChHHHHHHHHHhcc---cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECch
Confidence 344666666666663 23348999999999999999875 588999988766544433 3334443 66666666
Q ss_pred ccCCCCCCCeeEEEEcCccccc------CCC-------------------hHHHHHHHHHhcCCCeEEEEEc
Q 010592 158 IKMPYASRAFDMAHCSRCLIPW------GAN-------------------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~------~~~-------------------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.. ++++++||+|+|+..+... ..+ ...++.++.++|+|||.+++..
T Consensus 147 ~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44 4567899999997544311 000 0256889999999999999975
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=99.98 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=83.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecc-ccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~-~~lp~ 162 (506)
....+.-++++.++.....-|||||||+|..+..|.+.+ ++++|||+.|++.++. +-+...+...|+ +.+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCC
Confidence 344455666776666566799999999999999998875 6888898887765553 222223444454 78999
Q ss_pred CCCCeeEEEEcCcccccCC-------Ch----HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGA-------ND----GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~-------~~----~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..++||.|++..++ +|.- ++ ..++..++.+|++|+..++...+.
T Consensus 109 rpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 109 RPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 99999999986654 4421 12 267888999999999999975443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=107.68 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=84.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc--------ceeccccccCCCCCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI--------GIYHDWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~--------~~~~~~~~~~~~~p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|++.+ .+|+++|.|++|++.|.++.-. ......+.+++.++++||+|.|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4589999999999999999875 5899999999999999887321 1122223456666789999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------h---hHHHHHHHHhcCCceEEEee
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------D---EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~---~~~~~~~~~~~~~w~~~~~~ 478 (506)
+.|+.. .....++..+.+ +.+||.++..... . ..+++++++++.+|++...+
T Consensus 222 L~H~p~-~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 222 LIHYPQ-DKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred EEecCH-HHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 886542 234456666665 4566554432110 0 25778888888999866543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-09 Score=100.49 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=74.4
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C---cEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N---VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~---v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp 161 (506)
....+.+.+... ++.+|||||||+|.++..|++. . |+++|+++.++..+. +...+.+. ++.+...|.....
T Consensus 65 ~~~~~~~~l~~~--~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELK--PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCC--CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccCC
Confidence 334556666443 4459999999999999988875 2 889999886664444 33334444 4666667765544
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.....||+|++.....+ +...+.+.|+|||+|++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 34568999998765433 3466889999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-09 Score=102.34 Aligned_cols=111 Identities=25% Similarity=0.338 Sum_probs=74.2
Q ss_pred HHHHHHHhhCCC-CCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC
Q 010592 87 KYIDQLASVIPI-KNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp 161 (506)
...+.+.+.++. ...++.+|||||||+|.++..|++. .++++|+++.++..+...... .+. .+.+...| ++
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~~ 122 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---LE 122 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---ch
Confidence 334444555432 1123458999999999999999876 488899988777655544333 222 35566555 44
Q ss_pred CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEE
Q 010592 162 YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li 201 (506)
..+++||+|++..+++|+.... ..+++++.+.+++++.+.
T Consensus 123 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 4568899999999988865433 678888888775544433
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=101.32 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=68.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEccccccccCcC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~~~~~~~ 432 (506)
.+|||+|||+|.++..|++.. ..+++++|.+++|+..+.++++.....+..+.++.++ ++||+|.++++|++. .
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~---~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT---R 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC---c
Confidence 479999999999999997643 2467899999999999988775322222222233344 899999999999854 4
Q ss_pred CHHHHHHHHhhhccCC
Q 010592 433 NIEDILLEMDRILRPE 448 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPg 448 (506)
++..+|.||.|+++++
T Consensus 90 d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 90 NPEEILDEMLRVGRHA 105 (194)
T ss_pred CHHHHHHHHHHhCCeE
Confidence 6788999999988764
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=101.95 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC-CCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA-SRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~-~~sfDlV~~~~~l~ 177 (506)
.+.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+. ...+...+...++.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 3568999999999999988775 47888887766554443333 2334 466666776666544 47899999999886
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+ ..++..+++++.++|+|||.++++...
T Consensus 124 ~-~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 H-VPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred h-CCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 6 467789999999999999999987653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-09 Score=101.27 Aligned_cols=97 Identities=14% Similarity=0.230 Sum_probs=73.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCC-CCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-PRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~-p~s~Dlv~~~~~~ 425 (506)
..+|||+|||+|.++..+++.+ ..++++|.++.++..+.++ +. +.....-.+.++.. +++||+|++.+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4589999999999999888765 4699999999999988775 22 11111111222222 4799999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++ ..++..+|.++.++|+|||.+++.+
T Consensus 123 ~~---~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EH---VPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred Hh---CCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 74 4577889999999999999999865
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-09 Score=104.29 Aligned_cols=122 Identities=11% Similarity=0.120 Sum_probs=86.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH-hcCccc--------------eeccccccCCCC---C-
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY-ERGLIG--------------IYHDWCEAFSTY---P- 413 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~-~rg~~~--------------~~~~~~~~~~~~---p- 413 (506)
..+|||+|||.|..+..|+++| .+|+++|.|+..++.++ ++++.. .++.++.++..+ +
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 3589999999999999999987 58999999999999754 455421 223345555544 2
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE-E-----eCh------hhHHHHHHHHhcCCceEEEeec
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII-R-----DEV------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii-~-----d~~------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.+||+|+-..+|.+.. ...-...+..|.++|||||++++ . +.. -..++|.+++.. +|++.....
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEeee
Confidence 6899999877777553 33446799999999999997554 1 111 145777777753 388665443
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-09 Score=104.53 Aligned_cols=102 Identities=9% Similarity=0.188 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCChhHHHHhh--C----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWS--R----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~--~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
.+++|+|||||.|.++..+.. . .++++|+++..+..+........++ .+.|...|+..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 456899999998865544332 2 3889999887665555444332333 4778888877654335689999999
Q ss_pred CcccccC-CChHHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~-~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++|. .++..+++.+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 566999999999999999999975
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-08 Score=98.00 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++..++.. .++++|+++.++..+.. .+...+....+...|... .+++++||+|+++..+.+-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 458999999999999988875 47899998866644433 333345556666666544 3456799999998543221
Q ss_pred CCC--------------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 180 GAN--------------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 180 ~~~--------------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
... ...++.++.++|||||.+++..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 110 135788899999999999986543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=104.45 Aligned_cols=114 Identities=10% Similarity=0.108 Sum_probs=77.2
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-CCCeEEEEecccc-C
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIK-M 160 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~-l 160 (506)
..+.|++.++ ++.+|||+|||+|..+..|++. .++++|+|+.|+..++.+..... ++++...++|... +
T Consensus 53 ~~~~ia~~~~----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 53 HADEIAAATG----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred HHHHHHHhhC----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 3344555442 3458999999999999888765 48899999888876666554432 3455667778754 4
Q ss_pred CCCCC----CeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 161 PYASR----AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~----sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++.. ...++++..++.++.++. ..+|+++.++|+|||.|++...
T Consensus 129 ~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 129 ALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred hhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 44332 233444445555554322 6899999999999999999754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-09 Score=100.24 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=68.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C--CCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y--PRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~--p~s~Dlv~ 420 (506)
+......+|||+|||+|.+++.|++.-.....|+++|.+++|++.|.++ ++...++....++.. + ..+||+|+
T Consensus 68 l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 68 IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 3334456899999999999988876411124799999999999988764 322222222233322 2 27999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.++.+ +..|+.|+|||||+|++-.
T Consensus 148 ~~~~~~~---------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 148 VTAAAST---------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EccCcch---------hhHHHHHhcCcCcEEEEEE
Confidence 9666542 3368899999999999854
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=106.56 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=76.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~ 421 (506)
.+...+.++|||||||+|.++..++++. ...+++.+|. +.+++.+.++ |+...+...+.++-..+ ..+|+|.+
T Consensus 144 ~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~ 221 (306)
T TIGR02716 144 EAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLF 221 (306)
T ss_pred HcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEe
Confidence 3444556799999999999999998763 2367899998 4899877654 44333444455553322 34799988
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++++++. ......+|.++.|+|||||+++|.|.
T Consensus 222 ~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 222 CRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 77776432 12345799999999999999999763
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.9e-09 Score=99.62 Aligned_cols=98 Identities=14% Similarity=0.274 Sum_probs=73.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-cceeccccccCC-CCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFS-TYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-~~~~~~~~~~~~-~~p~s~Dlv~~~~~~ 425 (506)
+...|||||||+|.++..+.+.+ .+++++|.+++++..+.++ +. +.....-.+.++ ..+..||+|+++.+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45579999999999999998865 5799999999999988765 22 111111011222 123899999999888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+. .++..+|.++.++|+|||.+++.+
T Consensus 125 ~~~---~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 125 EHV---PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred hcc---CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 844 467789999999999999999975
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=104.34 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=81.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~s 166 (506)
..+.++.... ++.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+.. +.+...|+.++|+++++
T Consensus 172 ~~~~~l~~~~--~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~-~~g~~~i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 172 RAMVNLARVT--EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE-HYGIEDFFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHhCCC--CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH-HhCCCCCeEEecchhcCCcccCC
Confidence 3444444333 3458999999999988776654 58899998877765554433 33433 46777888899988889
Q ss_pred eeEEEEcCcccc---cCC----C-hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 167 FDMAHCSRCLIP---WGA----N-DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 167 fDlV~~~~~l~~---~~~----~-~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
||+|+++..+.. ... + ...++.++.++|||||++++..|..
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 999999743211 001 1 2689999999999999999987644
|
This family is found exclusively in the Archaea. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=98.90 Aligned_cols=103 Identities=21% Similarity=0.176 Sum_probs=70.9
Q ss_pred hCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCC
Q 010592 95 VIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRA 166 (506)
Q Consensus 95 ~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~----lp~~~~s 166 (506)
.++.. ++.+|||+|||+|.++..|++. .|.++|+++.++.... +.+.++ .++.+...|... .++. .+
T Consensus 67 ~l~i~--~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 67 NFPIK--KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred hCCCC--CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-cc
Confidence 45444 3459999999999999999875 3899999987775433 344433 345566666643 1223 56
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|++.... ......++.++.++|||||+|+++.+
T Consensus 142 ~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 142 VDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999974321 11124568999999999999999754
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-09 Score=101.27 Aligned_cols=97 Identities=16% Similarity=0.062 Sum_probs=68.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--CceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~Dlv~ 420 (506)
+...+..+|||+|||+|.+++.|++.......|+++|.++++++.|.++ |+ ..+...+.+... ++ ..||+|+
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEE
Confidence 3344556899999999999999987532224699999999999988765 33 223333344332 22 6899999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++... ..+..++.+.|+|||++++.
T Consensus 152 ~~~~~---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 152 VTAAG---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EcCCc---------ccccHHHHHhcCcCcEEEEE
Confidence 85433 23456788999999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-09 Score=92.06 Aligned_cols=101 Identities=23% Similarity=0.392 Sum_probs=70.6
Q ss_pred CEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010592 104 RTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
.+|||+|||+|.++..+++. .++++|+++.-+.-+..... ..+ .+..+.+.|..... +++++||+|+++..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP-RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH-HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH-HccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 48999999999999888865 47888887754333332222 222 35788888886664 778999999998766
Q ss_pred cccCCC-------hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 177 IPWGAN-------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~~-------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...... ...+++++.++|||||.+++..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 432111 14789999999999999998764
|
... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-09 Score=99.61 Aligned_cols=102 Identities=19% Similarity=0.112 Sum_probs=69.9
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C-C-Cce
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y-P-RTY 416 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~-p-~s~ 416 (506)
++..+......+|||+|||+|.+++.|+........|+++|.+++|++.+.++ |+ ..+...+.+... + + ..|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCc
Confidence 33334444567899999999999988876422235899999999999988875 22 122222334322 2 2 789
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|++...+. .+..++.+.|||||.+++--
T Consensus 147 D~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGP---------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCcc---------cchHHHHHhhCCCcEEEEEE
Confidence 9999965543 23456778999999999953
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-08 Score=92.31 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~---~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..++.+ .++++|+++.++..+..+. ...+.. +.+...|... ++.+++||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 3458999999999999999876 5888999886665444333 233332 5566666543 3455689999997654
Q ss_pred cccCC----------------C----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 177 IPWGA----------------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~----------------~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+..+ + ...+++++.++|||||.+++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 33110 0 14579999999999999988764
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=96.72 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=70.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-C-CCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-M-PYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~-l-p~~~ 164 (506)
+.+.+.++ ++.+|||||||+|.++..+++. .++++|+++. +++.+..+++ .+...+... + ++++
T Consensus 5 ~~i~~~i~----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~-----~i~~a~~~~~--~~~~~d~~~~l~~~~~ 73 (194)
T TIGR02081 5 ESILNLIP----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQD-----GVLACVARGV--NVIQGDLDEGLEAFPD 73 (194)
T ss_pred HHHHHhcC----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH-----HHHHHHHcCC--eEEEEEhhhcccccCC
Confidence 34555552 3348999999999999988764 3567777654 4444545544 445556643 4 4778
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|+|+.+++|+ .++..+++++.|++++ .+++.|.
T Consensus 74 ~sfD~Vi~~~~l~~~-~d~~~~l~e~~r~~~~---~ii~~p~ 111 (194)
T TIGR02081 74 KSFDYVILSQTLQAT-RNPEEILDEMLRVGRH---AIVSFPN 111 (194)
T ss_pred CCcCEEEEhhHhHcC-cCHHHHHHHHHHhCCe---EEEEcCC
Confidence 899999999999774 6688899999887654 4555443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=97.04 Aligned_cols=121 Identities=12% Similarity=0.218 Sum_probs=81.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC-CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p-~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..++..+. .+|+++|.++.|+..+.++ ++. +...+.++.. ++ ++||+|+++.-+.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhhhccCCCeeEEEECCCCC
Confidence 35799999999999999887642 4899999999999977764 221 1112233322 33 7999999975333
Q ss_pred cccC------------------cCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEe
Q 010592 427 LYKD------------------KCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 427 ~~~~------------------~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~ 477 (506)
.... ...+..++.++.++|||||.+++... .....++.+.+++.+|.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 1110 00145688999999999999998432 223445666677777765543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=91.96 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=84.3
Q ss_pred ChhhH-HHHHHHHHhhCCC--CCCCCCEEEEECCCCChhHHHHhhCC----cEEEecCccchHHHHHHHHHHcCCC--eE
Q 010592 81 FPQGA-DKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGVP--AV 151 (506)
Q Consensus 81 f~~~~-~~~~~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~----v~~vdis~~di~~~~~~~a~~~~~~--~~ 151 (506)
|+..+ +..++-+.+.+.. ......+|||+|||.|.+...|++.+ .+++|.|+..+.- +.+.|..++.+ +.
T Consensus 43 Fg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L-A~niAe~~~~~n~I~ 121 (227)
T KOG1271|consen 43 FGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL-AQNIAERDGFSNEIR 121 (227)
T ss_pred cCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH-HHHHHHhcCCCccee
Confidence 44444 3444444444420 11222389999999999999999873 6778887754432 34556666666 78
Q ss_pred EEEeccccCCCCCCCeeEEEEcCccc--ccCCC-----hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 152 IGVLGTIKMPYASRAFDMAHCSRCLI--PWGAN-----DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 152 ~~~~d~~~lp~~~~sfDlV~~~~~l~--~~~~~-----~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|.+.|+..-.+..+.||+|+--.++- .+.++ +..++..+.++|+|||+|+++....
T Consensus 122 f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 122 FQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred EEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 89999877677788999998543332 11211 1357889999999999999986533
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-08 Score=101.07 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~ 159 (506)
..+.+++.+.+.++ ++.+|||+|||+|.++..++.. .++++|+|+.++..+..+ +...+.++.+...|...
T Consensus 237 eTE~LVe~aL~~l~----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 237 ETEHLVEAVLARLP----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFD 311 (423)
T ss_pred cHHHHHHHhhhccC----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhc
Confidence 34666666665552 2348999999999999888753 488999998777555443 34445667777777654
Q ss_pred CCCC-CCCeeEEEEcCcccccCC--------------------Ch----HHHHHHHHHhcCCCeEEEEEcC
Q 010592 160 MPYA-SRAFDMAHCSRCLIPWGA--------------------ND----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 160 lp~~-~~sfDlV~~~~~l~~~~~--------------------~~----~~~l~e~~rvLkPGG~li~~~p 205 (506)
..++ .++||+|+|+.....-.. +. ..++.++.+.|+|||.+++...
T Consensus 312 ~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 312 TDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3332 458999999865422110 00 2566777889999999998754
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=102.39 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=76.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~~ 163 (506)
+.+.+.+.. .+..+|||||||+|.++..++++ .++++|+ +.++.. ..+.+.+.+.. +.+...|....+++
T Consensus 139 ~~l~~~~~~--~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~-a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKL--DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL-VNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCC--CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH-HHHHHHhCCccceEEEEecCccCCCCC
Confidence 334444433 33459999999999999999876 3667776 333322 22333444443 56677777665665
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +|+|+++.++++|.++. ..+++++.++|+|||.+++..
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 69999999988876543 679999999999999999974
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-08 Score=91.93 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=78.5
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCCCceeE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYPRTYDL 418 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p~s~Dl 418 (506)
.+......+|||+|||+|.++..++... ....|+++|.+++|++.+.++ ++ ..++..+.+. +.....+|.
T Consensus 35 ~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~ 112 (196)
T PRK07402 35 QLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDR 112 (196)
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCE
Confidence 3343445689999999999988887531 125899999999999988764 32 1222222322 222234677
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcC---CceEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGM---RWDTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~---~w~~~ 475 (506)
++.. ...++..++.++.|+|||||++++.... +...++.+.++.+ +|++.
T Consensus 113 v~~~-------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (196)
T PRK07402 113 VCIE-------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVV 166 (196)
T ss_pred EEEE-------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEE
Confidence 6552 1235688999999999999999997654 2444555556554 45544
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-08 Score=95.32 Aligned_cols=148 Identities=13% Similarity=0.210 Sum_probs=104.8
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCC----C-Ccee
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTY----P-RTYD 417 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~----p-~s~D 417 (506)
.+......+|||+|||+|..+-.|+++--. ..+++++..+.|.+.|.+-- +...++-.+.++..+ + .+||
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 344444788999999999999999887322 68999999999999887642 211222223343332 2 6799
Q ss_pred EEEEccccc---------------cccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC--
Q 010592 418 LIHAHGLFS---------------LYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE-- 480 (506)
Q Consensus 418 lv~~~~~~~---------------~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~-- 480 (506)
+|.|+-=|- +..-.+++++++.-..++|||||++.+--+.+.+.++-.++++.+|....+.-.
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 999964433 122245678899999999999999999999998999999999999987633222
Q ss_pred -CCCCCCeEEEEEEec
Q 010592 481 -DGPLVPEKILVAVKQ 495 (506)
Q Consensus 481 -~~~~~~~~~l~~~k~ 495 (506)
.+.....+++.++|.
T Consensus 198 ~~~k~A~~vLv~~~k~ 213 (248)
T COG4123 198 KIGKAANRVLVEAIKG 213 (248)
T ss_pred CCCCcceEEEEEEecC
Confidence 233345666777663
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=95.83 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHH------------HHHcCCCeEEEEeccccCCCC---CC
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQF------------ALERGVPAVIGVLGTIKMPYA---SR 165 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~------------a~~~~~~~~~~~~d~~~lp~~---~~ 165 (506)
+.+||+.|||.|.-+.+|+++| |+++|+|+.-+.....+. ...++..+.+.++|...++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 4589999999999999999985 788888876554332211 011345678889999888642 26
Q ss_pred CeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.||+|+-..+++++.++. .++.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 899999888888887665 789999999999999988865
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=95.49 Aligned_cols=125 Identities=21% Similarity=0.320 Sum_probs=85.0
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-CCCeEEE
Q 010592 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-GVPAVIG 153 (506)
Q Consensus 79 ~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~-~~~~~~~ 153 (506)
..|.-+.+..+ +..+.+... ..+|||+|||+|..+..|+++ .++++++.+.+...++...+... ...+.+.
T Consensus 25 ~~~~~~~DaiL--L~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 25 CGFRYGTDAIL--LAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred CccccccHHHH--HHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe
Confidence 34445555553 566664433 569999999999999999987 48889888766655554444421 1135566
Q ss_pred EeccccCC--CCCCCeeEEEEcCcccccCCC-----------------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 154 VLGTIKMP--YASRAFDMAHCSRCLIPWGAN-----------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 154 ~~d~~~lp--~~~~sfDlV~~~~~l~~~~~~-----------------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..|...+. ....+||+|+|+.-+..-... .+.+++.+.++|||||++.++.++.
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 66765543 334579999998765432222 1367889999999999999997654
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=95.04 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=72.1
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~ 164 (506)
....+.+.+... ++.+|||+|||+|.++..|+.. .++++|+++.++..+...+.. .+. ++.+...|......+.
T Consensus 66 ~~~~l~~~l~~~--~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 66 MVARMTELLELK--PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHhcCCC--CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCcC
Confidence 334455555433 3459999999999998877765 588899987655444433332 233 3566666654322234
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|++.....+ +..++.+.|+|||.+++...
T Consensus 143 ~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 78999999775533 24667899999999999754
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=83.16 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=70.3
Q ss_pred EEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC-CCCCeeEEEEcCcccccC
Q 010592 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY-ASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~-~~~sfDlV~~~~~l~~~~ 180 (506)
+|||+|||.|.++..++.. .+.++|+++..+................+...+...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999988873 578888876544322211111122345666666655543 567899999999875534
Q ss_pred CChHHHHHHHHHhcCCCeEEEEE
Q 010592 181 ANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 181 ~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.....+++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 45589999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=95.55 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=98.2
Q ss_pred cCCCCCCChhhHHHHHHHHHhh-CC-CCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC
Q 010592 74 FPGGGTQFPQGADKYIDQLASV-IP-IKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~-l~-~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~ 149 (506)
+.+.|.+|--..+++...+... .. .......++||||+|.|..+..++.. .|.++++|+.| ...-.++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-----r~rL~~kg~~ 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-----RWRLSKKGFT 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-----HHHHHhCCCe
Confidence 3456666665566664444322 11 11124568999999999999999875 68888887654 3444556654
Q ss_pred eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc--CCCCcccchh-cccCChHHhHHH
Q 010592 150 AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG--PPINWKTNYK-AWQRPKEELQEE 226 (506)
Q Consensus 150 ~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~--p~~~~~~~~~-~~~~~~~~~~~~ 226 (506)
+. +..++.-.+.+||+|.|.+++-. ..+|..+|++|.+.|+|+|.++++. |-..+.+.-. .+.++.+.+.-.
T Consensus 139 vl----~~~~w~~~~~~fDvIscLNvLDR-c~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~ 213 (265)
T PF05219_consen 139 VL----DIDDWQQTDFKFDVISCLNVLDR-CDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVK 213 (265)
T ss_pred EE----ehhhhhccCCceEEEeehhhhhc-cCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCC
Confidence 22 33333333568999999998854 7788999999999999999999964 5444444333 345554444333
Q ss_pred HHHHHHHHHhc
Q 010592 227 QRKIEEIANLL 237 (506)
Q Consensus 227 ~~~l~~l~~~~ 237 (506)
...+++....+
T Consensus 214 g~~~E~~v~~l 224 (265)
T PF05219_consen 214 GATFEEQVSSL 224 (265)
T ss_pred CCcHHHHHHHH
Confidence 33444444443
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6e-08 Score=96.45 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=90.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc---CccceeccccccC-CCC-CCceeEEEEccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---GLIGIYHDWCEAF-STY-PRTYDLIHAHGLFS 426 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---g~~~~~~~~~~~~-~~~-p~s~Dlv~~~~~~~ 426 (506)
+..+|||+|||+|.++..|+... ...+|+++|.++.+++.|.+. +....+...+.++ ..+ +++||+|.++.-+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 34579999999999999998753 235899999999999988875 2212222222332 222 37999999853222
Q ss_pred ccc-------------Cc----------CCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCC
Q 010592 427 LYK-------------DK----------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 427 ~~~-------------~~----------~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 483 (506)
... +. .....++.++.++|||||++++.-.......++.++.+.+|.......+ -.
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d-~~ 265 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD-LA 265 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC-CC
Confidence 000 00 0124688899999999999999655555677888888888863322222 11
Q ss_pred CCCeEEEEEEe
Q 010592 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
+...+++++|
T Consensus 266 -~~~r~~~~~~ 275 (275)
T PRK09328 266 -GRDRVVLGRR 275 (275)
T ss_pred -CCceEEEEEC
Confidence 3556666654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-08 Score=97.36 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=85.9
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGLFSL 427 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv~~~~~~~~ 427 (506)
.+|||+|||+|.++..+++.. ...+++++|.++.+++.+.+. ++ ..+...+.++ ..++ ++||+|.++.-+..
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 479999999999999998742 125899999999999988764 33 1223333343 2343 89999999654431
Q ss_pred ccC-----cC------------------CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 428 YKD-----KC------------------NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 428 ~~~-----~~------------------~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
... .. ....++.++.|+|||||.+++........++++++++.+|+..
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 110 00 0236789999999999999998766667889999999999744
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=93.67 Aligned_cols=116 Identities=19% Similarity=0.295 Sum_probs=77.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~ 426 (506)
...+|||+|||+|.++..++.... ...|+++|.++++++.+.+. ++....-.++.-+...+ ..||+|.|+-=|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 456799999999999999988643 35699999999999988663 22211111233344445 9999999975544
Q ss_pred cccC--cCCHHHHHHHHhhhccCCcEEEE--EeChhhHHHHHHHHh
Q 010592 427 LYKD--KCNIEDILLEMDRILRPEGAIII--RDEVDEIIKVKKIVG 468 (506)
Q Consensus 427 ~~~~--~~~~~~~l~e~~RvLrPgG~~ii--~d~~~~~~~~~~~~~ 468 (506)
.... ...+..++.+..+.|||||.|++ .........|++++.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 2221 01246799999999999998855 445555555666555
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.7e-08 Score=91.58 Aligned_cols=99 Identities=16% Similarity=0.087 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcC--CCeEEEEecccc-CCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIK-MPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~-lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..++.. .++++|+++.++..+.. .+...+ ..+.+...+... ++...+.||.|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 4459999999999998887542 48999998876654433 333344 235555566644 33334689999985
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ..+...+++++.++|||||++++...
T Consensus 119 ~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 119 GG----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 42 23457899999999999999998643
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=99.23 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeEEEE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---MPYASRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~---lp~~~~sfDlV~~ 172 (506)
.++.+|||+|||+|.++..+++. .|.++|+++.+. +.+++.+.++ .++...+.|+.. +.....+||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 34569999999999999999886 389999987543 3455555544 345666666642 2223458999999
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
... . .++...++.++.++|||||+|++..
T Consensus 209 Dva--~-pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 209 DVA--Q-PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred eCC--C-cchHHHHHHHHHHhccCCCEEEEEE
Confidence 763 2 2333567789999999999999964
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-08 Score=101.59 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHH------c----CCCeEEEEecccc------CCC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE------R----GVPAVIGVLGTIK------MPY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~------~----~~~~~~~~~d~~~------lp~ 162 (506)
.+.+|||+|||-|.-....... .++++|++...+.++..+...- + ...+.+...|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5679999999988766655554 4789999887776666555211 1 1345666666532 222
Q ss_pred CCCCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
....||+|-|.+++|+..... ..+|..+...|+|||+|+.++|..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 235999999999998766655 468999999999999999998754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-08 Score=97.08 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=84.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcccc-
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGLF- 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv~~~~~~- 425 (506)
..+|||+|||+|.++..|+... ...+|+++|.++.+++.|.+. |+...+...+.++ ..++ ++||+|.++-=+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 3579999999999999998752 135899999999999988775 3322223333443 3344 689999996211
Q ss_pred -----cccc---CcC-------------CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeec
Q 010592 426 -----SLYK---DKC-------------NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 426 -----~~~~---~~~-------------~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.... +.. ....++.++.++|+|||++++.-.... +.+++++...+|.-...+.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 1000 000 124678999999999999998665433 6888888877766444433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-09 Score=100.14 Aligned_cols=98 Identities=22% Similarity=0.324 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc-cCC-CCCCCeeEEEEcCcc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMP-YASRAFDMAHCSRCL 176 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~-~lp-~~~~sfDlV~~~~~l 176 (506)
+..+++||+|||||-.+..|... .++++|| |++|+..|.+++.-....+++.. .++ ..+..||+|++..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDi-----S~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDI-----SENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCch-----hHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34679999999999999998775 4666655 56677778888765555555543 333 456789999999998
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+ ..+.+.++.-+...|+|||.|.||+
T Consensus 199 ~Y-lG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PY-LGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred Hh-hcchhhHHHHHHHhcCCCceEEEEe
Confidence 65 4567899999999999999999986
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=91.44 Aligned_cols=162 Identities=19% Similarity=0.295 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHH-HHHHcCCCeEE--EEecc
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQ-FALERGVPAVI--GVLGT 157 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~-~a~~~~~~~~~--~~~d~ 157 (506)
.+.+.+.+.+.++.. +.+|||||||||..+.+++++ . ....|.++.-. ..++ ...+.+.+... ...|+
T Consensus 11 k~pIl~vL~~~l~~~---~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~--~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 11 KDPILEVLKQYLPDS---GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR--PSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred HhHHHHHHHHHhCcc---CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH--hhHHHHHHhcCCcccCCCeEeec
Confidence 355666666666322 226999999999999999886 2 23334433211 1222 22333322111 12233
Q ss_pred cc--CCC------CCCCeeEEEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEEcCCCCcccc-------hhcccCCh
Q 010592 158 IK--MPY------ASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPINWKTN-------YKAWQRPK 220 (506)
Q Consensus 158 ~~--lp~------~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~p~~~~~~~-------~~~~~~~~ 220 (506)
.. .|. ..++||+|+|.+++ |+.+-. +.+++.+.++|+|||.|++.+|...--.. ++.+++..
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence 22 232 35689999999987 555433 78999999999999999999876643211 12222211
Q ss_pred ---HHhHHHHHHHHHHHHhcceeeccc-----cCceEEEEe
Q 010592 221 ---EELQEEQRKIEEIANLLCWEKKSE-----KGEIAVWQK 253 (506)
Q Consensus 221 ---~~~~~~~~~l~~l~~~~~w~~~~~-----~~~~~i~~k 253 (506)
-.+++ .+.+..+++.-+++.... ++.+.||+|
T Consensus 165 dp~~GiRD-~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 165 DPEWGIRD-IEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCcCccC-HHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 12222 345777777766665432 344666665
|
The function of this family is unknown. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-09 Score=97.77 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.....++|||||.|...+.|..++ ++-+|.|..|+... +-++..++.....+.|-+.|+|.+++||+|+++..+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~--~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl- 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSC--RDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL- 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHh--hccCCCceEEEEEecchhcccccccchhhhhhhhhh-
Confidence 344589999999999999999884 57778776555322 223334566777788889999999999999999887
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
||..+.+..+..+...|||+|.|+-+.-.-
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence 999999999999999999999999875443
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=103.04 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=70.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccc-eeccccccCCC---CCCc-----eeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIG-IYHDWCEAFST---YPRT-----YDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~-~~~~~~~~~~~---~p~s-----~Dlv~ 420 (506)
..+|||+|||+|.++..|++......+|+++|.|++||+.+.++- ... .+...+.++.. ++.. ..+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 357999999999999999875321368999999999999998762 111 12223344432 2222 33555
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+.+.|.+.. ..+...+|.++.++|+|||.|+|.
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 556666443 445678999999999999999983
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=93.87 Aligned_cols=97 Identities=21% Similarity=0.344 Sum_probs=61.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfD 168 (506)
+.+.+.+... .....|-|+|||.+.++..+... .|...|+.+. +..+..+|+..+|++++++|
T Consensus 61 d~iI~~l~~~-~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 61 DVIIEWLKKR-PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHCTS--TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHhc-CCCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCcee
Confidence 4555555432 23458999999999999887643 4777777432 11255679999999999999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++..+|+ ..+...++.|+.|+|||||.|.+..
T Consensus 125 v~VfcLSLM--GTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 125 VAVFCLSLM--GTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEhhhh--CCCcHHHHHHHHheeccCcEEEEEE
Confidence 999877663 4667999999999999999999974
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-08 Score=95.02 Aligned_cols=140 Identities=11% Similarity=0.066 Sum_probs=89.9
Q ss_pred CCceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhc-----CccceeccccccCC-CC--CCceeEEEEc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDWCEAFS-TY--PRTYDLIHAH 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~~~~~~-~~--p~s~Dlv~~~ 422 (506)
..++|+|||||.|++.+.+.. .-.....++++|.++++++.|++. |+-..+.....++- .. ...||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678899999999987665543 212235799999999999988763 22111222122221 12 2789999997
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---hHHH-HH-HHHhcCCceEEEeecCCCCCCCeEEEEEEecc
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIK-VK-KIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~-~~-~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
++.... ..+...+|..+.|.|||||+|+++---+ .+-. +. ..++ +|++...-+-.++ .-.-+++++|.-
T Consensus 203 -ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~-v~Nsvi~~r~~~ 276 (296)
T PLN03075 203 -ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDE-VINSVIIARKPG 276 (296)
T ss_pred -cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCC-ceeeEEEEEeec
Confidence 555332 3577899999999999999999985321 0000 10 1112 8987766555433 345688899865
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.7e-08 Score=96.85 Aligned_cols=139 Identities=15% Similarity=0.140 Sum_probs=90.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcc----
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHG---- 423 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv~~~~---- 423 (506)
.+|||+|||+|.++..|+... ...+|+++|.|++++..|.+. ++...+...+.++ ..++ ..||+|.++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 579999999999999998742 125899999999999988874 2211122222222 2234 4899999952
Q ss_pred ---------ccccccCc---------CCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHh-cCCceEEEeecCCCCC
Q 010592 424 ---------LFSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG-GMRWDTKMVDHEDGPL 484 (506)
Q Consensus 424 ---------~~~~~~~~---------~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~ 484 (506)
++.+..+. ..+..++.+..++|+|||++++.-.......+++++. ..+|....+ ..| -.
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~D-~~ 272 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GRD-LN 272 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ecC-CC
Confidence 11111100 0234689999999999999999777666778888876 577863322 222 22
Q ss_pred CCeEEEEEEec
Q 010592 485 VPEKILVAVKQ 495 (506)
Q Consensus 485 ~~~~~l~~~k~ 495 (506)
....+++++++
T Consensus 273 g~~R~~~~~~~ 283 (284)
T TIGR00536 273 GKERVVLGFYH 283 (284)
T ss_pred CCceEEEEEec
Confidence 35667777653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-07 Score=93.24 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=75.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
+.+++.+...+.. .++.+|||+|||+|.++..++.. .++++|+++..+..+..+........+.+...|... +
T Consensus 94 e~l~~~~~~~~~~--~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~ 170 (275)
T PRK09328 94 EELVEWALEALLL--KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-P 170 (275)
T ss_pred HHHHHHHHHhccc--cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-c
Confidence 5565555544422 23458999999999999998865 488999988666544443331122345666666532 3
Q ss_pred CCCCCeeEEEEcCcccccC------C-------------------ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWG------A-------------------NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~------~-------------------~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++.++||+|+++..+.... + ....++.++.++|+|||++++..
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3457899999975432110 0 01357788889999999999964
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=96.33 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcC----CCeEEE
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERG----VPAVIG 153 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~~----~~~~~~ 153 (506)
..+-+....-++++....+..+||+||||.|...-.|.+- .+.++|+||..+ ++.+++. ......
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~~~~e~~~~af 127 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSSGYDESRVEAF 127 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhccccchhhhccc
Confidence 3344445566666555444448999999999887777664 377888887533 3333221 111122
Q ss_pred Eecc--c--cCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 154 VLGT--I--KMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 154 ~~d~--~--~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.|. . .-|...+++|.|++.++|....++. ..++.++.++|||||.+++.+...
T Consensus 128 v~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 128 VWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred ceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 2232 2 3356789999999999998776665 799999999999999999986544
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-08 Score=96.05 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=87.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CCCceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p~s~Dlv~~~~~~~~ 427 (506)
..+|||+|||+|.++..++... ...+|+++|.++.+++.|.+. +.--...++.+.++. ....||+|.++-=+.-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3479999999999999887641 125799999999999988764 211111122222221 2367999999643220
Q ss_pred c------c-----C--cC------C----HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCC
Q 010592 428 Y------K-----D--KC------N----IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHED 481 (506)
Q Consensus 428 ~------~-----~--~~------~----~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~ 481 (506)
. . + +. + +..++....++|||||.+++.-.......+..++.+.+|...+..++|
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 0 0 0 00 0 236778888999999999997666667789999999999988887775
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=93.82 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI 158 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~ 158 (506)
.+.+++.+.+.+... ....+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+.. +.+...|..
T Consensus 98 te~lv~~~l~~~~~~-~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLISQ-NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhhc-CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchh
Confidence 466666655444211 12248999999999999999864 588999988666444433 3334443 666666654
Q ss_pred cCCCCCCCeeEEEEcCccccc------------CC------------ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 159 KMPYASRAFDMAHCSRCLIPW------------GA------------NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 ~lp~~~~sfDlV~~~~~l~~~------------~~------------~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. +++.++||+|+++...... .+ ....++.++.+.|+|||++++...
T Consensus 176 ~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 176 E-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred c-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 3 3445589999997432211 10 113678889999999999999764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-08 Score=94.93 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=65.3
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEE-----eccccCCC--CCCCeeEEEEcC
Q 010592 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGV-----LGTIKMPY--ASRAFDMAHCSR 174 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~-----~d~~~lp~--~~~sfDlV~~~~ 174 (506)
+.++|+|||+|.-+..+++. .|+++|+++. |++.+.+.. ++.... .+....++ .++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~-----mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEA-----MLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHH-----HHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 38999999999777777775 7999988764 555665532 222221 12222333 389999999999
Q ss_pred cccccCCChHHHHHHHHHhcCCCe-EEEEE
Q 010592 175 CLIPWGANDGRYMIEVDRVLRPGG-YWVLS 203 (506)
Q Consensus 175 ~l~~~~~~~~~~l~e~~rvLkPGG-~li~~ 203 (506)
|+ ||.+ .+.+++++.|+||+.| .+.+-
T Consensus 109 a~-HWFd-le~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 AV-HWFD-LERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hH-Hhhc-hHHHHHHHHHHcCCCCCEEEEE
Confidence 98 7765 6899999999999866 66554
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.7e-08 Score=89.66 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfD 168 (506)
++.+|||+|||+|.++..++.+ .++++|+++.+ ....+.+...|....+ ++.++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 3458999999999998888764 38999998742 1123455555654432 4567899
Q ss_pred EEEEcCccc---ccCCC-------hHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLI---PWGAN-------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~---~~~~~-------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|++..+.+ ++..+ ...++.++.++|+|||++++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999864321 11111 2578999999999999999975
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.8e-08 Score=100.09 Aligned_cols=138 Identities=10% Similarity=0.054 Sum_probs=90.4
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCC--CC--CCceeEEEEcccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFS--TY--PRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~--~~--p~s~Dlv~~~~~~~~ 427 (506)
.+|||+|||+|.++..|+... ...+|+++|.|+.|++.|.+.- .-..+...+.++. .+ ..+||+|.|+-=+..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 479999999999998887531 1368999999999999887752 1001222233331 12 268999999653210
Q ss_pred cc-------------------CcCC---HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCCCC
Q 010592 428 YK-------------------DKCN---IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLV 485 (506)
Q Consensus 428 ~~-------------------~~~~---~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 485 (506)
.. .... +..++.+..+.|+|||.+++.-.....+.+++++.+.+|....+..+-. +
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~--G 409 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLA--G 409 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCC--C
Confidence 00 0001 2257778889999999999866666778899999988987543333322 3
Q ss_pred CeEEEEEEe
Q 010592 486 PEKILVAVK 494 (506)
Q Consensus 486 ~~~~l~~~k 494 (506)
.+.++++++
T Consensus 410 ~dR~v~~~~ 418 (423)
T PRK14966 410 LDRVTLGKY 418 (423)
T ss_pred CcEEEEEEE
Confidence 466776664
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-08 Score=101.25 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC---CCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY---PRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~---p~s~Dlv~~~~ 423 (506)
.+..+|||.|||+|+++..++..+ ..++++|.++.|+..+... |+.. ++..+.++..+ +++||+|.++.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECC
Confidence 345579999999999987766654 5899999999999977654 3322 12222333333 37999999964
Q ss_pred ccccc--cCc----CCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 424 LFSLY--KDK----CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 424 ~~~~~--~~~----~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
-+... ... .....+|.++.|+|||||++++.-+.. ..+++++++.+| +.
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR-VV 311 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc-ch
Confidence 33211 011 114689999999999999998865432 256677889999 44
|
This family is found exclusively in the Archaea. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=89.85 Aligned_cols=107 Identities=18% Similarity=0.096 Sum_probs=70.9
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc-CCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-MPYAS 164 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~-lp~~~ 164 (506)
.+.+.+... .+.+|||+|||+|.++..++.. .++++|+++.++..+..+. .+.+. ++.+...|+.. ++...
T Consensus 31 ~l~~~l~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~-~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 31 LLISQLRLE--PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNC-DRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCCeEEEECchHHHHhhCC
Confidence 355555433 3458999999999999888743 4899999987765544333 33333 35566566533 22222
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..+|.|+... ..+...+++++.++|+|||+|++..+
T Consensus 108 ~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 3467665422 22347899999999999999999864
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.1e-08 Score=91.90 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=71.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDM 169 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDl 169 (506)
+.|.+.|...+ ....|-|+|||.+.++... ...|..+|+.+ ++-.+..+|+.++|++++|.|+
T Consensus 169 d~ii~~ik~r~-~~~vIaD~GCGEakiA~~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 169 DVIIRKIKRRP-KNIVIADFGCGEAKIASSE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHHHHHHHhCc-CceEEEecccchhhhhhcc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccE
Confidence 34555553332 3458999999999877521 12578787743 2334567799999999999999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++..+| +..+...++.|++|+|||||.+++..-
T Consensus 232 aV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 232 AVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred EEeeHhh--hcccHHHHHHHHHHHhccCceEEEEeh
Confidence 9986555 456779999999999999999999743
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-08 Score=90.88 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=56.4
Q ss_pred eecCCCcccHHHHHhcCc---------cceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEE
Q 010592 381 VPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAI 451 (506)
Q Consensus 381 ~~~d~~~~~l~~~~~rg~---------~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ 451 (506)
+++|.|++||++|.+|.- +.....-++++|..+++||+|.+..++++. .+...+|.|++|+|||||.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEE
Confidence 478999999999976521 122222234555444899999998888744 57889999999999999999
Q ss_pred EEEeChh
Q 010592 452 IIRDEVD 458 (506)
Q Consensus 452 ii~d~~~ 458 (506)
+|.|-..
T Consensus 78 ~i~d~~~ 84 (160)
T PLN02232 78 SILDFNK 84 (160)
T ss_pred EEEECCC
Confidence 9987543
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-08 Score=90.39 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=60.9
Q ss_pred EEEecCccchHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEE
Q 010592 126 IAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 126 ~~vdis~~di~~~~~~~a~~~---~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
+++|+|+.|+..+..+..... ..++.+.++|+.++|+++++||+|++.++++++ .++..+++|+.|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 367888877765543322111 124678889999999999999999999988664 6789999999999999999998
Q ss_pred Ec
Q 010592 203 SG 204 (506)
Q Consensus 203 ~~ 204 (506)
..
T Consensus 80 ~d 81 (160)
T PLN02232 80 LD 81 (160)
T ss_pred EE
Confidence 64
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-08 Score=97.44 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc------CCCeEEEEecc------ccCCCCCC
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER------GVPAVIGVLGT------IKMPYASR 165 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~------~~~~~~~~~d~------~~lp~~~~ 165 (506)
.++..+||+|||-|.-+...... .++++||+...+..++.+.-.-. -.++.+..+|. ..+++.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 34557999999999766666554 47889998766655554332211 13467777775 24566677
Q ss_pred CeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 166 AFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+||+|-|.+++|+-.... ..+|.++.+.|||||+||-+.|..
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 799999999996533333 578999999999999999998865
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=93.11 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=70.1
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
..+|||+|||+|.++..++.+ .++++|+++..+..+.. .+...++ .+.+...|... ++++++||+|+++.-.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 358999999999999999875 48899998876654443 3344444 35666666532 2345689999997432
Q ss_pred cc------c----CCCh--------------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 177 IP------W----GAND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~------~----~~~~--------------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. . ..++ ..++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 0 0011 3678889999999999999864
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.6e-07 Score=84.11 Aligned_cols=124 Identities=17% Similarity=0.118 Sum_probs=71.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~ 432 (506)
.-.|-|+|||.+.+|..+... ..|...|+-... ++ + +.-+ ...+|--++++|++.+...+ =..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~n-----~~-V--tacd-ia~vPL~~~svDv~VfcLSL----MGT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAPN-----PR-V--TACD-IANVPLEDESVDVAVFCLSL----MGT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-SS-----TT-E--EES--TTS-S--TT-EEEEEEES-------SS
T ss_pred CEEEEECCCchHHHHHhcccC----ceEEEeeccCCC-----CC-E--EEec-CccCcCCCCceeEEEEEhhh----hCC
Confidence 347999999999999887643 345555554110 11 1 1111 13344444999987763333 256
Q ss_pred CHHHHHHHHhhhccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEecc
Q 010592 433 NIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
+..+.|.|..|||||||.|+|.+-.. .++...+.+++++++....|.. +.-++++.-+|.-
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~---n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES---NKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-----STTEEEEEEEE-S
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC---CCeEEEEEEEEcC
Confidence 78899999999999999999977543 5566777799999997775544 2346666666654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.8e-08 Score=92.35 Aligned_cols=118 Identities=17% Similarity=0.340 Sum_probs=89.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-ceeccccccCCCCCCceeEEEEccccccccC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
...++||+|+|-|+....|+.- .-+|.+.++|+.|...-.+||.. -...+|. .-+..||+|-|-+++ +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~----~~~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQ----QTDFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhh----ccCCceEEEeehhhh----h
Confidence 4568999999999999999763 35699999999999999999962 1222233 235789999996666 5
Q ss_pred cC-CHHHHHHHHhhhccCCcEEEEE---------------eC-------------hhhHHHHHHHHhcCCceEEEeecC
Q 010592 431 KC-NIEDILLEMDRILRPEGAIIIR---------------DE-------------VDEIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 431 ~~-~~~~~l~e~~RvLrPgG~~ii~---------------d~-------------~~~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
|| ++..+|.+|++.|+|+|.++|. +. .+.+..+-++++.+++++......
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRL 241 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 88 5778999999999999999992 11 013344447799999998765443
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.6e-08 Score=91.70 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=71.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----C-cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~-v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
......+.+.+.+.+ +.+|||||||+|++++.|+.. + |+++|+.+.....+...++.....++.+..+|...-
T Consensus 58 P~~~a~~l~~L~l~p--g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKP--GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-T--T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHHhcCC--CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 445566777776554 459999999999999988864 2 778998875444444444433333567777776433
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
--....||.|++....... -..+.+.||+||++++-..
T Consensus 136 ~~~~apfD~I~v~~a~~~i-------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEI-------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred cccCCCcCEEEEeeccchH-------HHHHHHhcCCCcEEEEEEc
Confidence 2235689999998765321 2557778999999999643
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=94.56 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=79.9
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcccc--
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGLF-- 425 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv~~~~~~-- 425 (506)
.+|||+|||+|.++..|+... ...+|+++|.++.+++.|.+. ++...+...+.++ ..++ ++||+|.|+-=+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 579999999999999998742 236899999999999988775 3322233334443 2344 689999996211
Q ss_pred -----------ccccCc------C---CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCce
Q 010592 426 -----------SLYKDK------C---NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 426 -----------~~~~~~------~---~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~ 473 (506)
.+..+. . ....++.++.++|+|||++++.-... ...+.+++...++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~ 280 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFT 280 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCE
Confidence 111100 0 12468999999999999999964433 44588887766543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.9e-08 Score=91.66 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=67.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC--CceeEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP--RTYDLI 419 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p--~s~Dlv 419 (506)
.+...+..+|||+|||+|.++..|+... ..|+++|.+++++..+.++ |+. .+...+.++ ..++ +.||+|
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCEE
Confidence 3444456789999999999998887753 3799999999999988765 221 111122222 2222 789999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+++..+. .+..++.+.|+|||.+++.-
T Consensus 149 ~~~~~~~---------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAP---------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCch---------hhhHHHHHhcCCCcEEEEEE
Confidence 9955443 34567889999999999853
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=102.78 Aligned_cols=123 Identities=16% Similarity=0.203 Sum_probs=84.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCC-CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p-~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..|+..- ....|+++|.|+.+++.|.+. ++...+...+.+ +..++ +.||+|+|+.=+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 3579999999999998887531 125899999999999998875 322112222233 22333 6899999953211
Q ss_pred c--------------cc------CcCC---HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010592 427 L--------------YK------DKCN---IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 427 ~--------------~~------~~~~---~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
. .. .... +..++.++.++|+|||.+++.-.....+.+.+++.+.+|....
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIES 290 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceE
Confidence 0 00 0011 2347889999999999999976656678899998888997543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=94.94 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=72.4
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp 161 (506)
+...+.+.+... ++.+|||||||+|.++..+++. .|+++|+++.++..+... +...+.. +.+...|....+
T Consensus 68 l~a~ll~~L~i~--~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~-l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCC--CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCChhhcc
Confidence 334455555443 3458999999999999998864 288999988766544433 3333443 566666765555
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...++||+|++...+.+ ....+.+.|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 44568999999754422 2345778999999998854
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.5e-08 Score=79.09 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=69.5
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh---cCc---cceeccccccCCC-CCCceeEEEEcccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGL---IGIYHDWCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~---rg~---~~~~~~~~~~~~~-~p~s~Dlv~~~~~~~~ 427 (506)
+|||+|||+|.++..+... ...+++++|.+++++..+.+ .+. +..++.-..+... .+..||+|++...+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999988872 24689999999888887762 121 1111111112221 2478999999888874
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
. ......++..+.+.|||||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 446678999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-08 Score=94.01 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
...++||.|+|.|+.+..|+-. .|..++..+..+..+...+......-..+.+...+....+.++||+|.+.+|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4568999999999999988765 3555555443333322221112222245556666666545679999999999999
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 179 WGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
+.++. -.+|+.+...|+|+|.+++-
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 87655 79999999999999999994
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=92.31 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=69.6
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+. .+.+...|... +++.++||+|+|+....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 58999999999999999865 488999988766544433 333443 36677667533 23456899999974321
Q ss_pred c------------cCC--------C----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 P------------WGA--------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~------------~~~--------~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. +.+ + ...++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 000 0 13678999999999999999754
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=92.50 Aligned_cols=137 Identities=20% Similarity=0.277 Sum_probs=91.5
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEEEccccc-c--
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFS-L-- 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~-~-- 427 (506)
+|||||||+|-.|.+|+.... ..+|+++|.|++.+..|.+- |+.....--+.-|+.+...||+|.|+-=.- .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 799999999999999988642 36999999999999988664 431111111122444557999999942111 0
Q ss_pred --cc--------------CcC---CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCc-eEEEeecCCCCCCCe
Q 010592 428 --YK--------------DKC---NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRW-DTKMVDHEDGPLVPE 487 (506)
Q Consensus 428 --~~--------------~~~---~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~ 487 (506)
.. ..+ -...++.+..++|+|||.+++.-.....+.+++++.+.++ ..... ..+ -...+
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~-~~d-~~g~~ 269 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVET-LKD-LFGRD 269 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEE-Eec-CCCce
Confidence 00 001 1125889999999999999998887778899999999994 32222 222 22356
Q ss_pred EEEEEEe
Q 010592 488 KILVAVK 494 (506)
Q Consensus 488 ~~l~~~k 494 (506)
.++++++
T Consensus 270 rv~~~~~ 276 (280)
T COG2890 270 RVVLAKL 276 (280)
T ss_pred EEEEEEe
Confidence 6666554
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.7e-07 Score=87.50 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~ 158 (506)
...+.+++.+...+... ....+|||+|||+|.++..++.. .++++|+++..+..++.+ +...+ ..+...|..
T Consensus 68 ~~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~--~~~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAG--GTVHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcC--CEEEEeech
Confidence 34466767666655311 12348999999999999988764 488999988766544433 33333 345556654
Q ss_pred c-CCC-CCCCeeEEEEcCcccccC------C---------------C----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 159 K-MPY-ASRAFDMAHCSRCLIPWG------A---------------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 ~-lp~-~~~sfDlV~~~~~l~~~~------~---------------~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ++- ..++||+|+++.-..... + + ...++..+.++|+|||.+++...
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3 221 135799999986443210 0 0 12677778899999999999864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.9e-07 Score=90.12 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=71.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Ccc---ceecccccc----CCCCCCceeEEEEcc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLI---GIYHDWCEA----FSTYPRTYDLIHAHG 423 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~---~~~~~~~~~----~~~~p~s~Dlv~~~~ 423 (506)
..++|||||||+|.++..++... ....++++|.+++++++|.+. ++. ..++-.+.+ +...+.+||+|.++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 45789999999999999887642 246899999999999999886 221 112222233 23345789999985
Q ss_pred ccccc--cCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 424 LFSLY--KDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 424 ~~~~~--~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.|... ........++.++.++|+|||.++|.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 34321 11112368999999999999999983
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=86.88 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
+.+.+.+... .+.+|||+|||+|.++..++++ .++++|+++.++......... ..++.+...|+..+++++.+|
T Consensus 3 ~~i~~~~~~~--~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLR--PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCC--CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 3455555433 3458999999999999999987 588999987655433322221 235677788888888877789
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHh--cCCCeEEEEE
Q 010592 168 DMAHCSRCLIPWGANDGRYMIEVDRV--LRPGGYWVLS 203 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rv--LkPGG~li~~ 203 (506)
|.|+++..+ +.. ...+..+.+. +.++|.|++.
T Consensus 79 d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 79 YKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 999998654 321 3344444432 4578888875
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-07 Score=85.62 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=70.8
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~ 164 (506)
....+.+.+...+ +.+|||||||+|+.++.|++. .|.+++..+.-...+..++ ...+. ++.+.+.|...---+.
T Consensus 60 ~vA~m~~~L~~~~--g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L-~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELKP--GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNL-ETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCCC--CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHH-HHcCCCceEEEECCcccCCCCC
Confidence 4455677775544 459999999999999999886 5788887653222222222 23344 4666666653322234
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..||.|+........ + ..+.+-|||||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~v-P------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEV-P------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCC-C------HHHHHhcccCCEEEEEEc
Confidence 689999987765332 2 456678999999999643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-07 Score=96.84 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=76.9
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCC
Q 010592 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASR 165 (506)
Q Consensus 92 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~ 165 (506)
+...+.. .++.+|||+|||+|..+..+++. .++++|+++.++.... +.+...+..+.+...|...++ +..+
T Consensus 236 ~~~~l~~--~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 236 AATLLAP--QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHcCC--CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccC
Confidence 3444433 34569999999999999888865 4889999887765444 344445666677777876654 3457
Q ss_pred CeeEEEEcCccc-----------ccCCCh----------HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLI-----------PWGAND----------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~-----------~~~~~~----------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||.|++..... .|...+ ..+|.++.++|||||++++++..
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 899999532110 111111 36899999999999999998743
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=88.73 Aligned_cols=102 Identities=13% Similarity=0.219 Sum_probs=76.9
Q ss_pred CceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcCc------cceeccccccC-CC--CCCceeEEEEc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAF-ST--YPRTYDLIHAH 422 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~~~~~-~~--~p~s~Dlv~~~ 422 (506)
..+||.+|||.|....-|.+. +-....|.+.|.|++.+++..++-. -+.+.|.+.+= .. .++++|+|.+-
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 337999999999976666542 2223789999999999998887632 23444433322 11 23999999999
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+|+... ...+..++..+.|+|||||.|++||
T Consensus 152 FvLSAi~-pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 152 FVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEeccC-hHHHHHHHHHHHHHhCCCcEEEEee
Confidence 9999655 5578899999999999999999986
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.8e-07 Score=89.49 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH-----cCCCeEEEEecccc-CCCCCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE-----RGVPAVIGVLGTIK-MPYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~-----~~~~~~~~~~d~~~-lp~~~~sfDlV~ 171 (506)
.+.+||+||||.|..+..++++ .++++|+++.++..+...+..- ...++.+...|... +....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4568999999999999998876 4789999886665444333221 12346677777643 333467899999
Q ss_pred EcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+...- ++... ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 85432 32221 1577899999999999999864
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.8e-07 Score=90.19 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=92.7
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Ccc---------ceeccc-ccc---CCCCCC
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLI---------GIYHDW-CEA---FSTYPR 414 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~---------~~~~~~-~~~---~~~~p~ 414 (506)
.....++||++|||+|..++.+.+.+ .+.+|+.+|++++|+++|.+. .+. ..+.-. +.. +...++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 34456799999999999888888753 357899999999999999862 110 011001 111 222347
Q ss_pred ceeEEEEcccccccc--CcCCHHHHHHHHhhhccCCcEEEEEeChh-----hHHHHHHHHhcCCceEEEeec-CCCCCCC
Q 010592 415 TYDLIHAHGLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVDH-EDGPLVP 486 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~--~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----~~~~~~~~~~~~~w~~~~~~~-~~~~~~~ 486 (506)
.||+|.++..-.... ...--..++..+.+.|+|||.+++....+ ....+.+.+++....+..... ...-...
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 899999963211100 01111468899999999999999965432 223355556666666553322 2111124
Q ss_pred eEEEEEEeccccc
Q 010592 487 EKILVAVKQYWVA 499 (506)
Q Consensus 487 ~~~l~~~k~~w~~ 499 (506)
+.+++|.|.-...
T Consensus 306 WgF~~as~~~~~~ 318 (374)
T PRK01581 306 WGFHIAANSAYVL 318 (374)
T ss_pred eEEEEEeCCcccc
Confidence 8888998865543
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.1e-08 Score=82.52 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=68.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c---cceeccccccCC-CCC-CceeEEEEccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L---IGIYHDWCEAFS-TYP-RTYDLIHAHGL 424 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~---~~~~~~~~~~~~-~~p-~s~Dlv~~~~~ 424 (506)
.+|||+|||+|.++.++.+.+ ..+++++|.++..++.++.+- + +..++.-..++. .++ +.||+|.++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 369999999999999998865 479999999999999888752 1 111111111222 233 99999999887
Q ss_pred cccccC-----cCCHHHHHHHHhhhccCCcEEEEE
Q 010592 425 FSLYKD-----KCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 425 ~~~~~~-----~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|..... +.....++.++.|+|||||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 773211 112357899999999999999874
|
... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.5e-07 Score=95.41 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC---CC--CCCceeEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF---ST--YPRTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~---~~--~p~s~Dlv 419 (506)
...+..+|||||||+|+.+.++++.-. ...|+++|.+++++..+.++ |+...+...+.+. +. .+.+||.|
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 334457899999999999999887421 35899999999999987665 3321111112222 11 13789999
Q ss_pred EEc------cccccccCcCC----------------HHHHHHHHhhhccCCcEEEEEe-C---hhhHHHHHHHHhc
Q 010592 420 HAH------GLFSLYKDKCN----------------IEDILLEMDRILRPEGAIIIRD-E---VDEIIKVKKIVGG 469 (506)
Q Consensus 420 ~~~------~~~~~~~~~~~----------------~~~~l~e~~RvLrPgG~~ii~d-~---~~~~~~~~~~~~~ 469 (506)
.++ +++. +..+ -..+|.++.|+|||||+|+++. + .+-...++.++++
T Consensus 314 llDaPcSg~G~~~---~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 314 LLDAPCSATGVIR---RHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred EEcCCCCCCcccc---cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 963 2333 2212 1369999999999999999963 2 2344556666554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-07 Score=88.25 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=79.6
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-----C-CCceeEEEEccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-----Y-PRTYDLIHAHGL 424 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-----~-p~s~Dlv~~~~~ 424 (506)
.+||||||.|.|...++... ...|++++|...+.+..|..+ ++ .+++.++.+... + |+++|-|+...=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 69999999999999998642 237999999998888766655 33 334444433322 3 389999998211
Q ss_pred cc-----cccCcCCHHHHHHHHhhhccCCcEEEE-EeChhhHHHHHHHHhc--CCceEE
Q 010592 425 FS-----LYKDKCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGG--MRWDTK 475 (506)
Q Consensus 425 ~~-----~~~~~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~--~~w~~~ 475 (506)
=. |.+.|---+..|.++.|+|+|||.|.+ +|..++.+.+.+.+.. -.++..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 11 122222225799999999999999999 5666788888887666 366644
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.3e-07 Score=95.75 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC----CCCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP----YASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp----~~~~sfDlV~ 171 (506)
++.+|||+|||+|..+..+++. .++++|+++.++.....+ +...|.. +.+...|...++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4568999999999999888764 389999988776544433 3444553 566777776665 4467899999
Q ss_pred Ec------CcccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 172 CS------RCLIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 172 ~~------~~l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+. .++.+ .++ ...+|.++.++|||||+|+.++..
T Consensus 331 ~DaPCSg~G~~~r-~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHR-HPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCccccccc-CcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 62 12211 111 247799999999999999988643
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-07 Score=88.63 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
...+|||||+|.|.++..++++ .++..|+ ...++.+.+ ...+.+..+|.. -++|. +|+|+..+++|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 3458999999999999999876 3566666 334444444 556888888887 66665 99999999999
Q ss_pred ccCCCh-HHHHHHHHHhcCCC--eEEEEEc
Q 010592 178 PWGAND-GRYMIEVDRVLRPG--GYWVLSG 204 (506)
Q Consensus 178 ~~~~~~-~~~l~e~~rvLkPG--G~li~~~ 204 (506)
+|.++. ..+|+++.+.|+|| |.|++..
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 997755 78999999999999 9999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-07 Score=87.00 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=70.5
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CC--CCCCCeeEEEEcCccc
Q 010592 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MP--YASRAFDMAHCSRCLI 177 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~-lp--~~~~sfDlV~~~~~l~ 177 (506)
.+||||||.|.+...++.. .++|+|+...-+..+..+.......++.+...|+.. +. ++++++|.|+..+. .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 8999999999999999876 589999988766555555444444456667677654 22 56789999998764 3
Q ss_pred ccCCCh--------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~--------~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|.... ..++..+.++|+|||.|.+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 554322 3899999999999999999864
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.7e-07 Score=92.57 Aligned_cols=96 Identities=15% Similarity=0.056 Sum_probs=65.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC---CCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY---PRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~---p~s~Dlv~~~~ 423 (506)
.+..+|||+|||+|.+++.|++.......|+++|.+++|++.|.++ |+ ..++..+.+.... ...||+|++..
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEECC
Confidence 3446899999999999999987421113599999999999988763 33 2223333443221 26799999853
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+. .+...+.++|||||.+++-..
T Consensus 158 g~~---------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 158 GVD---------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred chH---------HhHHHHHHhcCCCCEEEEEeC
Confidence 332 244567889999999998543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-06 Score=76.99 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=85.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh---c-Cccceecccccc----CCCCCCceeE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---R-GLIGIYHDWCEA----FSTYPRTYDL 418 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~---r-g~~~~~~~~~~~----~~~~p~s~Dl 418 (506)
.+...+...++|+|||||+.+..++.. .....|+++|.++++++.+.. | |+ .++.-.-.+ ++.+| +||.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~-~~da 105 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLP-SPDA 105 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCC-CCCE
Confidence 455566668999999999998888732 234799999998888886544 2 32 222111222 33344 8999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe-ChhhHHHHHHHHhcCCc-eEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRW-DTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w-~~~ 475 (506)
|+.... -.++.+|......|||||.+++.- +++....+-+.++++++ ++.
T Consensus 106 iFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 106 IFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred EEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 998443 267889999999999999999964 56677778888999999 544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-07 Score=94.76 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=74.4
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEE--EEeccccCCC--C
Q 010592 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVLGTIKMPY--A 163 (506)
Q Consensus 92 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~--~~~d~~~lp~--~ 163 (506)
+...+.. .++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...+..+.+ ...+....++ +
T Consensus 230 ~~~~L~~--~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 230 VATWLAP--QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHhCC--CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEecccccccccccc
Confidence 4444532 34569999999999999888764 4899999887665444 334445555433 4444444443 4
Q ss_pred CCCeeEEEEc------CcccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 164 SRAFDMAHCS------RCLIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~------~~l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.++||.|++. .++.+ .++ ...+|.++.++|||||.|++++...
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~-~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRR-HPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccCEEEEcCCCCCCccccc-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6789999952 12211 121 2478999999999999999987544
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-07 Score=97.67 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEc--
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCS-- 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~-- 173 (506)
++.+|||+|||+|..+..+++. .++++|+++.++.... +.+...++. +.+...|+..++ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 4568999999999988777653 4899999987775544 344445554 566677776654 45789999952
Q ss_pred --Cccc-------ccCCC----------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 174 --RCLI-------PWGAN----------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 --~~l~-------~~~~~----------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..-. .|... ...+|.++.++|||||++++++...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1110 11111 1358999999999999999987544
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=86.63 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-CCCeEEEEecccc-CCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIK-MPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~-lp~~~~sfDlV~~~~~ 175 (506)
.+.+|||||||+|.++..++.. .++++|+++..+..+...+.... ..++.+...|... +.-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 3468999999999999988765 48999998765543333222211 2345666677643 222246899999853
Q ss_pred ccc--cCC--ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIP--WGA--NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~--~~~--~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.. ... ....+++++.++|+|||.+++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 211 111 12689999999999999999863
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-06 Score=82.95 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=70.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcCCH
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNI 434 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~ 434 (506)
.|-|+|||-+.+|..-.. .|..+.+++++-. -..-.+ ..+|.-++|.|++.+-. + .-..++
T Consensus 183 vIaD~GCGEakiA~~~~~-kV~SfDL~a~~~~----------V~~cDm----~~vPl~d~svDvaV~CL--S--LMgtn~ 243 (325)
T KOG3045|consen 183 VIADFGCGEAKIASSERH-KVHSFDLVAVNER----------VIACDM----RNVPLEDESVDVAVFCL--S--LMGTNL 243 (325)
T ss_pred EEEecccchhhhhhcccc-ceeeeeeecCCCc----------eeeccc----cCCcCccCcccEEEeeH--h--hhcccH
Confidence 589999999988752221 2344444443322 111111 23555569999876522 2 224688
Q ss_pred HHHHHHHhhhccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecC
Q 010592 435 EDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 435 ~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.+.+.|.+|||||||.|+|.+-.. .+..+.+-+.+|++++...+..
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 899999999999999999976433 4555777789999997765544
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.5e-07 Score=87.44 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=68.2
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
..+|||+|||+|.++..++.+ .++++|+++.+ ++.++++...+.+...|+..+.. .++||+|+++..+.+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~a-----l~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEF-----ARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHH-----HHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccc
Confidence 348999999999998888653 48888887644 44444443456777778776553 468999999888766
Q ss_pred cCCCh-------------------HHHHHHHHHhcCCCeEEEEE
Q 010592 179 WGAND-------------------GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~-------------------~~~l~e~~rvLkPGG~li~~ 203 (506)
..... ..++....++|+|+|.+++.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 43221 24567778899999988775
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-07 Score=91.96 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=71.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.....+. ...++ ++.+...|...++...++||.|++.-.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4568999999999999888763 3889999887665444333 33444 355666676666555567999996311
Q ss_pred ------ccc-------cCC--------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 176 ------LIP-------WGA--------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 176 ------l~~-------~~~--------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.+ +.+ ....+|.++.+.|||||+|+.++...
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 100 000 11358999999999999999986543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.9e-07 Score=94.75 Aligned_cols=121 Identities=13% Similarity=0.206 Sum_probs=77.0
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC-C-CceeEEEEc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY-P-RTYDLIHAH 422 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~-p-~s~Dlv~~~ 422 (506)
......+|||+|||+|+.+.+|++.-.-...|+++|.++.|++.+.++ |+ ..+...+.+...+ + .+||+|.++
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D 325 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLD 325 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEc
Confidence 333456899999999998887765311124899999999999877664 33 2223334444433 2 789999963
Q ss_pred ------ccccccc------CcCCH-------HHHHHHHhhhccCCcEEEEEeC-h---hhHHHHHHHHhcC
Q 010592 423 ------GLFSLYK------DKCNI-------EDILLEMDRILRPEGAIIIRDE-V---DEIIKVKKIVGGM 470 (506)
Q Consensus 423 ------~~~~~~~------~~~~~-------~~~l~e~~RvLrPgG~~ii~d~-~---~~~~~~~~~~~~~ 470 (506)
+++..-. ...++ ..+|.++.++|||||++++..- . +-...++.++++-
T Consensus 326 ~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 326 APCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred CCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 1221000 00111 2589999999999999999752 2 2345566666643
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-06 Score=91.85 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=80.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC-------CCcee
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY-------PRTYD 417 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~-------p~s~D 417 (506)
......+|||+|||+|+.+.+|++.-.....|+++|.++.|++.+.++ |+ ..+...+.+...+ +++||
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCC
Confidence 334456899999999999988876411124799999999999977664 33 2233333443322 37899
Q ss_pred EEEEc------cccccccC------cCC-------HHHHHHHHhhhccCCcEEEEEe-Ch---hhHHHHHHHHhcC-Cce
Q 010592 418 LIHAH------GLFSLYKD------KCN-------IEDILLEMDRILRPEGAIIIRD-EV---DEIIKVKKIVGGM-RWD 473 (506)
Q Consensus 418 lv~~~------~~~~~~~~------~~~-------~~~~l~e~~RvLrPgG~~ii~d-~~---~~~~~~~~~~~~~-~w~ 473 (506)
.|.++ +++.+-.. ..+ ...+|.++.++|||||+|+.++ .+ +-...++.++++. .|+
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 99973 23321110 001 2468999999999999998864 22 3456666766654 465
Q ss_pred E
Q 010592 474 T 474 (506)
Q Consensus 474 ~ 474 (506)
.
T Consensus 408 ~ 408 (434)
T PRK14901 408 L 408 (434)
T ss_pred e
Confidence 3
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.4e-07 Score=87.08 Aligned_cols=120 Identities=10% Similarity=0.031 Sum_probs=85.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--CceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--~s~Dlv~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..++.+. ...+|+++|.++.|++.++++- ..+...+.++..+. ++||+|.++.-|.+...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 3579999999999988886642 1258999999999999998762 12222345555443 78999999888875321
Q ss_pred c-------C----------CHHHHHHHHhhhccCCcEEEEEeC---h----hhHHHHHHHHhcCCceEE
Q 010592 431 K-------C----------NIEDILLEMDRILRPEGAIIIRDE---V----DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 431 ~-------~----------~~~~~l~e~~RvLrPgG~~ii~d~---~----~~~~~~~~~~~~~~w~~~ 475 (506)
. - .+...+....++|+|+|.+++.=. . -.-++.+++++..++...
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 1 1 146788999999999998877411 1 144778888888888743
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-07 Score=93.99 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP-YASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlV~~~~ 174 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...++. +.+...|...++ +..++||.|++.-
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 4558999999999988887763 4899999987775444 334444554 566777777665 4567899999621
Q ss_pred cc---cccCCC------------------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 175 CL---IPWGAN------------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l---~~~~~~------------------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. -.+..+ ...+|.++.+.|||||++++++...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 11 011111 1456899999999999999987544
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.46 E-value=7e-07 Score=85.77 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHH-HHcCC----------------CeEEEEeccccCCC
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFA-LERGV----------------PAVIGVLGTIKMPY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a-~~~~~----------------~~~~~~~d~~~lp~ 162 (506)
.+.+||..|||.|.-...|+++| |+++|+|+ .+++.+ .+++. .+.+.++|...++-
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~-----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP-----TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-H-----HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCH-----HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 34589999999999999999996 66666655 444444 22222 24567778877764
Q ss_pred CC-CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010592 163 AS-RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 163 ~~-~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
.. ++||+|+-..+|+-+.++. .++.+.+.++|+|||.+++
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 33 5899999877776665555 7999999999999999444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.6e-07 Score=91.02 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=77.0
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCC----hhHHHHhhC--------CcEEEecCccchHHHHHHH--
Q 010592 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVA----SWGAYLWSR--------NVIAMSFAPRDSHEAQVQF-- 142 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G----~~~~~L~~~--------~v~~vdis~~di~~~~~~~-- 142 (506)
+.+.|.+....+ +.+.+.+... ...-+|+..||++| +++..|.+. .|+|+||++..+..+..-.
T Consensus 92 neT~FFRd~~~f-~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 92 NLTAFFREAHHF-PILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCCCccCCcHHH-HHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 444454555444 3333333111 22368999999999 344444442 3778888776554443310
Q ss_pred --HH--------Hc----------C---------CCeEEEEeccccCCCC-CCCeeEEEEcCcccccCCCh-HHHHHHHH
Q 010592 143 --AL--------ER----------G---------VPAVIGVLGTIKMPYA-SRAFDMAHCSRCLIPWGAND-GRYMIEVD 191 (506)
Q Consensus 143 --a~--------~~----------~---------~~~~~~~~d~~~lp~~-~~sfDlV~~~~~l~~~~~~~-~~~l~e~~ 191 (506)
.. ++ + ..+.|...|....+++ .+.||+|+|.++++|+.+.. ..++..+.
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~ 249 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFV 249 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHH
Confidence 00 00 0 0134445555443443 57899999999999986543 79999999
Q ss_pred HhcCCCeEEEEEc
Q 010592 192 RVLRPGGYWVLSG 204 (506)
Q Consensus 192 rvLkPGG~li~~~ 204 (506)
+.|+|||+|++..
T Consensus 250 ~~L~pgG~L~lG~ 262 (287)
T PRK10611 250 PLLKPDGLLFAGH 262 (287)
T ss_pred HHhCCCcEEEEeC
Confidence 9999999988764
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=85.95 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI 158 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~ 158 (506)
..+.+++.+...+... .. +|||+|||+|..+..++.+ .|+++|+|+.-+ ..+.+.+...++ +..+...|.
T Consensus 95 dTe~Lve~~l~~~~~~--~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al-~~A~~Na~~~~l~~~~~~~~dl- 169 (280)
T COG2890 95 DTELLVEAALALLLQL--DK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL-ALARENAERNGLVRVLVVQSDL- 169 (280)
T ss_pred chHHHHHHHHHhhhhc--CC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH-HHHHHHHHHcCCccEEEEeeec-
Confidence 3355656554333221 11 7999999999999999876 589999988544 333445555564 223333221
Q ss_pred cCCCCCCCeeEEEEcCcccccC----------CCh--------------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 159 KMPYASRAFDMAHCSRCLIPWG----------AND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 ~lp~~~~sfDlV~~~~~l~~~~----------~~~--------------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.-+. .+.||+|+||.-..+-. .+| ..++.++.+.|+|||.+++...
T Consensus 170 f~~~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 170 FEPL-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccc-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1122 34899999987654422 011 1678889999999999999754
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=92.82 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc--
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-- 159 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~-- 159 (506)
.+.+++.+.+.+... ++.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...+. ++.+...|+..
T Consensus 282 ~e~l~~~vl~~l~~~--~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQ--PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCC--CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhh
Confidence 466667777777433 3458999999999999999876 48899999877755543 3344444 46777777643
Q ss_pred --CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 160 --MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 --lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++.+++||+|++.... .. ....+..+.+ ++|++.++++..|.
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeEEEEEeChH
Confidence 34556789999986532 22 2345555555 69999999998766
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-07 Score=89.21 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=68.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c--cceecccccc----CCCCCCceeE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L--IGIYHDWCEA----FSTYPRTYDL 418 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~--~~~~~~~~~~----~~~~p~s~Dl 418 (506)
...++|||+|||+|+++..+.+.. .+.+|+.+|+++++++.|.+.- . ...+.-..++ +...+++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 346789999999999999988752 2468999999999999998741 1 0011111122 2223479999
Q ss_pred EEEccccccccC-cCCHHHHHHHHhhhccCCcEEEEE
Q 010592 419 IHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 419 v~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.++..-..... ..--..++.++.|+|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998543221110 001256789999999999999995
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=84.13 Aligned_cols=100 Identities=14% Similarity=0.222 Sum_probs=78.3
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC---CCCCCCeeEEEEcCc
Q 010592 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM---PYASRAFDMAHCSRC 175 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l---p~~~~sfDlV~~~~~ 175 (506)
..+||||||.|.+...+|++ .++|+++...-+ ..+.+.+.+.++ ++.+...|+..+ -+++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999987 589999987555 344556667778 788888887543 245669999999875
Q ss_pred ccccCCCh--------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 176 LIPWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~~--------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+|+... ..+++.+.++|+|||.|.+.+.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 3665433 3799999999999999999864
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.8e-07 Score=88.37 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=75.9
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC-CCCCCceeEEEEccc
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-STYPRTYDLIHAHGL 424 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~-~~~p~s~Dlv~~~~~ 424 (506)
......+.++|||||+|+|.++.+++++. ..++++-.|.+ .+++.+.+..- +.....+| ..+|. +|++...++
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~v~~~~~~~~r---v~~~~gd~f~~~P~-~D~~~l~~v 167 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDLP-EVIEQAKEADR---VEFVPGDFFDPLPV-ADVYLLRHV 167 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE-H-HHHCCHHHTTT---EEEEES-TTTCCSS-ESEEEEESS
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeeccH-hhhhccccccc---cccccccHHhhhcc-ccceeeehh
Confidence 35677788999999999999999997642 23578888985 88888877321 11222333 45667 999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCC--cEEEEEeCh
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPE--GAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPg--G~~ii~d~~ 457 (506)
++.+.+ .+...+|+.+.+.|+|| |.|+|.|.+
T Consensus 168 Lh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSD-EDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 985552 24568999999999999 999997654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=83.76 Aligned_cols=93 Identities=10% Similarity=0.158 Sum_probs=64.2
Q ss_pred CCEEEEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 103 VRTALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
+.+|||+|||+|.++..++++ .++++|+++. +.+.|++....+.+...|....++ +++||+|+++.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~-----Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT-----YYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH-----HHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 458999999999999887653 4788888654 445555544456777777765554 568999999876
Q ss_pred ccccCC-C----------hHHHHHHHHHhcCCCeEEEE
Q 010592 176 LIPWGA-N----------DGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 176 l~~~~~-~----------~~~~l~e~~rvLkPGG~li~ 202 (506)
+..... + ...++..+.+++++|+. |+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 642211 1 13578888887777775 54
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=93.12 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=76.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIH 420 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~Dlv~ 420 (506)
......+|||+|||+|+.+.++++.-.-...|+++|.++.+++.+.++ |+. .+...+.+ ++ ..+++||.|.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEE
Confidence 334456899999999999888876411125899999999999988765 331 12222222 33 1247899999
Q ss_pred Ecc---ccccccCcCCH----------------HHHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhc
Q 010592 421 AHG---LFSLYKDKCNI----------------EDILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGG 469 (506)
Q Consensus 421 ~~~---~~~~~~~~~~~----------------~~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~ 469 (506)
++. .+..+..+.++ ..+|.+..+.|||||.++.+. ..+-.+.|+.++..
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 742 22221111111 357999999999999999953 23345556666543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=92.97 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C-CCceeEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y-PRTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~-p~s~Dlv 419 (506)
......+|||+|||+|+.+..+++... ...|+++|.++.|+..+.++ |+ . ....+.+... + +++||.|
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~-~-~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL-K-ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC-C-eEEEEcCcccchhhcccCCCCEE
Confidence 334456899999999999999987531 15799999999999988665 32 1 1122333322 2 3789999
Q ss_pred EEcccccc---ccCc---------CC-------HHHHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhc
Q 010592 420 HAHGLFSL---YKDK---------CN-------IEDILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGG 469 (506)
Q Consensus 420 ~~~~~~~~---~~~~---------~~-------~~~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~ 469 (506)
.++.-.+. ..++ .+ ...+|.+..++|||||.++++. ..+-.+.+..++++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 95432221 1011 11 1368999999999999999865 23344566666554
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.2e-06 Score=82.06 Aligned_cols=103 Identities=11% Similarity=0.107 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc----CCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER----GVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~----~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+++||+||||+|.++..+++. .++++|+++..+..+...+.... ...+.+...|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3459999999999999888765 48889998765544433222211 1234455555432 2222568999998
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.... +.... ...+++.+.+.|+|||.+++...
T Consensus 152 D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 6542 22221 25788999999999999998743
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-06 Score=91.31 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=78.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CCCceeEEEEc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YPRTYDLIHAH 422 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p~s~Dlv~~~ 422 (506)
.+..+|||+|||+|+++..+++.-.....|+++|.++++++.+.++ |+. .+...+.++.. ++++||+|.++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence 4456899999999999998887421125899999999999887664 331 22233344433 34789999975
Q ss_pred cccc---cccCc---------CCH-------HHHHHHHhhhccCCcEEEEEeC-h---hhHHHHHHHHhcC-CceE
Q 010592 423 GLFS---LYKDK---------CNI-------EDILLEMDRILRPEGAIIIRDE-V---DEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 423 ~~~~---~~~~~---------~~~-------~~~l~e~~RvLrPgG~~ii~d~-~---~~~~~~~~~~~~~-~w~~ 474 (506)
.-.+ ...++ .++ ..+|.++.|+|||||.++.+.- . +....++.++++. .|+.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 3211 11111 111 2589999999999999998532 2 3344566666654 3554
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=81.52 Aligned_cols=102 Identities=20% Similarity=0.379 Sum_probs=65.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCC------------------------
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVP------------------------ 149 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~----~~~~~------------------------ 149 (506)
.+..+|||||-.|.++..+++. .+.++||++.-+..|..+... +....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3458999999999999999886 589999977655444332111 00000
Q ss_pred ------------eEEEEeccccCCCCCCCeeEEEEc----CcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 150 ------------AVIGVLGTIKMPYASRAFDMAHCS----RCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 150 ------------~~~~~~d~~~lp~~~~sfDlV~~~----~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
..++.....-+.+....||+|+|. ++...|.++. ..+++.+.+.|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 001111111223445689999984 3323445544 79999999999999999987
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.5e-06 Score=79.20 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=75.3
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~~ 163 (506)
.|...+.+.+ +.+|||.|.|+|.++.+|+.. .++++++-+.....+..++.. -++. +.+...|....-++
T Consensus 85 ~I~~~~gi~p--g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVARLGISP--GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHcCCCC--CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEeccccccccc
Confidence 3455554444 459999999999999999953 488888866444333333322 2322 55556666665555
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. .||+|+.- .++|..++..+..+|||||.+++-.|..
T Consensus 162 ~-~vDav~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 162 E-DVDAVFLD------LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred c-ccCEEEEc------CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 5 89999863 2567899999999999999999988755
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-06 Score=83.06 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=83.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec-cccccCCC----C-CCc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFST----Y-PRT 415 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~-~~~~~~~~----~-p~s 415 (506)
...+.++|||+|||+|.-+..|+..-.....|+.+|.+++++++|.+. |+-. ... +..+.++. . +.+
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 334467899999999987666654311135899999999999988764 3311 111 11111221 1 368
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------hhHHHHHH----HHhcCCceE
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------DEIIKVKK----IVGGMRWDT 474 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------~~~~~~~~----~~~~~~w~~ 474 (506)
||+|+.... .......+.++.+.|||||.+++-+.. .....|++ +...-+|.+
T Consensus 145 fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~ 218 (234)
T PLN02781 145 FDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEI 218 (234)
T ss_pred CCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEE
Confidence 999998221 124467889999999999998873211 01223333 355557777
Q ss_pred EEeecCCCCCCCeEEEEEEec
Q 010592 475 KMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.+....|| +++++|.
T Consensus 219 ~~lp~gdG------~~i~~k~ 233 (234)
T PLN02781 219 SQISIGDG------VTLCRRL 233 (234)
T ss_pred EEEEeCCc------cEEEEEe
Confidence 77766554 5666664
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=91.45 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC--CCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP--YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp--~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...+.. +.+...|...++ ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 3458999999999999888764 3899999886664443 344444543 566667776553 33 689999974
Q ss_pred Cccc------c-----cCCC----------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 174 RCLI------P-----WGAN----------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 174 ~~l~------~-----~~~~----------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.... + |... ...+|.++.++|||||.|+.++..
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3110 0 1011 135799999999999999987643
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=88.24 Aligned_cols=103 Identities=12% Similarity=-0.005 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHH--HH---H--HcCCCeEEEEecccc-CCCCCCCee
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQ--FA---L--ERGVPAVIGVLGTIK-MPYASRAFD 168 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~--~a---~--~~~~~~~~~~~d~~~-lp~~~~sfD 168 (506)
..+.+||+||||+|..++.+++. .++++|+++.++..+... +. . -...++.+.+.|... +.-..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 34569999999999998888875 488888877555333310 00 0 013456667777654 344456899
Q ss_pred EEEEcCcccccCC-----ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLIPWGA-----NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~-----~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|++... .+... ....+++.+.+.|+|||.|++..
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9998642 11110 01568999999999999998864
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=82.87 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=69.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccc-----eecccccc----CCCCCCceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIG-----IYHDWCEA----FSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~-----~~~~~~~~----~~~~p~s~Dlv 419 (506)
...++||++|||+|+++..+.+.. .+.+++.+|.++++++.+.+.- ..+ .+.-..++ +...+++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345699999999999998887754 2468999999999999887741 100 01000111 11235799999
Q ss_pred EEccccccccCcCC--HHHHHHHHhhhccCCcEEEEE
Q 010592 420 HAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.++....... ... ...++..+.++|+|||.+++.
T Consensus 150 i~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865433111 112 357889999999999999995
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-06 Score=79.30 Aligned_cols=135 Identities=21% Similarity=0.336 Sum_probs=93.2
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH----hcCc----cceecccccc-------CCCCCCceeEE
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGL----IGIYHDWCEA-------FSTYPRTYDLI 419 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~----~rg~----~~~~~~~~~~-------~~~~p~s~Dlv 419 (506)
+||+||||||.-+++++.. ...+.-.|.|.....+.-+. +.|+ .....|.+.+ .+..+++||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999998888774 23367889998877654333 3343 2222222222 12234799999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEE------------------------EeCh---hhHHHHHHHHhcCCc
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII------------------------RDEV---DEIIKVKKIVGGMRW 472 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii------------------------~d~~---~~~~~~~~~~~~~~w 472 (506)
+|.++++... +...+.++.+..++|+|||.|++ +|+. ..++.|.+++.+.++
T Consensus 107 ~~~N~lHI~p-~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHISP-WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhHHHhcC-HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999987554 55568899999999999999999 2221 256789999999998
Q ss_pred eEEEeecCCCCCCCeEEEEEEe
Q 010592 473 DTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~k 494 (506)
+.. +..+-| ....+||.+|
T Consensus 186 ~l~--~~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELE--EDIDMP-ANNLLLVFRK 204 (204)
T ss_pred ccC--cccccC-CCCeEEEEeC
Confidence 832 233333 4567888776
|
The function of this family is unknown. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.1e-07 Score=84.18 Aligned_cols=103 Identities=22% Similarity=0.376 Sum_probs=59.7
Q ss_pred CCCEEEEECCCCC----hhHHHHhhC---------CcEEEecCccchHHHHHHH------------HHHc------C---
Q 010592 102 TVRTALDTGCGVA----SWGAYLWSR---------NVIAMSFAPRDSHEAQVQF------------ALER------G--- 147 (506)
Q Consensus 102 ~~~~VLDiGCG~G----~~~~~L~~~---------~v~~vdis~~di~~~~~~~------------a~~~------~--- 147 (506)
..-+|+..||++| +++..|.+. .+.++|+++..+..+..-. ..++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 444445551 3677777665443332100 0000 0
Q ss_pred -------CCeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 148 -------VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 -------~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.|...+....+.+.+.||+|+|.++++++.+.. ..+++.+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 125666667666334567899999999999986544 789999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-06 Score=83.19 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=72.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceec--cccccCCCCC-CceeEEEEc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYH--DWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~--~~~~~~~~~p-~s~Dlv~~~ 422 (506)
...+|||+|||||+|+..|++.| +..|+++|.+++|+........ ..++. .|.+ ++ .+ ..+|++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-~d~~~~Dvsfi- 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-PDFATFDVSFI- 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-CCceeeeEEEe-
Confidence 35589999999999999999976 3689999999888875333211 11111 1222 21 12 47777666
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEE-------------------EeCh---hhHHHHHHHHhcCCceEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIII-------------------RDEV---DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii-------------------~d~~---~~~~~~~~~~~~~~w~~~ 475 (506)
.+..+|..|.+.|+| |.+++ +|.. ..++++...+.+.+|.+.
T Consensus 150 ----------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 150 ----------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred ----------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 223378899999999 87776 2322 255677777888999865
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-06 Score=84.16 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=73.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~Dlv~~~~ 423 (506)
....+|||+|||+|+.+..|++.-.....|+++|.++.+++.+.++ |+ ..+...+.+ ++.....||.|.++-
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 3456799999999999988876311123799999999999877664 33 122222233 222236799998743
Q ss_pred ccccc---cCc---------CCH-------HHHHHHHhhhccCCcEEEEEe-Ch---hhHHHHHHHHhc
Q 010592 424 LFSLY---KDK---------CNI-------EDILLEMDRILRPEGAIIIRD-EV---DEIIKVKKIVGG 469 (506)
Q Consensus 424 ~~~~~---~~~---------~~~-------~~~l~e~~RvLrPgG~~ii~d-~~---~~~~~~~~~~~~ 469 (506)
=.+-. ... .++ ..+|.++.+.|||||+|+.+. +. +-...++.+++.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 22211 000 011 259999999999999999863 22 223445555543
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=81.67 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=78.9
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh---cCccc---eeccccccCCCCCCceeEEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGLIG---IYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~---rg~~~---~~~~~~~~~~~~p~s~Dlv~~ 421 (506)
+..+...+|||+||++|+|+..+.+++.....|+++|..+. -....- +|-+. ......+.++.....||+|.|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-ccccceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence 45556789999999999999999998756789999998843 111000 11111 111111112111269999999
Q ss_pred ccccccccCcC-C----H---HHHHHHHhhhccCCcEEEEEe-----ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeE
Q 010592 422 HGLFSLYKDKC-N----I---EDILLEMDRILRPEGAIIIRD-----EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEK 488 (506)
Q Consensus 422 ~~~~~~~~~~~-~----~---~~~l~e~~RvLrPgG~~ii~d-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 488 (506)
+..+....++. + + ...|.=+...|||||.+++.- ....+..++..++..++. .... .++.+.|.
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~--Kp~~-sr~~s~E~ 174 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV--KPPS-SRSESSEE 174 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE--E-TT-SBTTCBEE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE--ECcC-CCCCccEE
Confidence 88666443321 1 1 134444557799999999842 224556666666655444 2211 23345788
Q ss_pred EEEEEe
Q 010592 489 ILVAVK 494 (506)
Q Consensus 489 ~l~~~k 494 (506)
+|+|++
T Consensus 175 Ylv~~~ 180 (181)
T PF01728_consen 175 YLVCRG 180 (181)
T ss_dssp EEESEE
T ss_pred EEEEcC
Confidence 888874
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.6e-06 Score=84.24 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEeccccC-C-CCCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIKM-P-YASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~l-p-~~~~sfDlV~ 171 (506)
.+.+||+||||.|..+..+++. +++.+|+++..+..+...+... ....+.+...|.... . .+.+.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3568999999999999999876 4778888775443333222221 123466777775322 1 2356899999
Q ss_pred EcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... .+.... ...+++.+.+.|+|||.++...
T Consensus 171 ~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 8542 222221 1478999999999999998753
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=79.60 Aligned_cols=128 Identities=18% Similarity=0.270 Sum_probs=85.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----Cccc-eeccccccCCCCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIG-IYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~-~~~~~~~~~~~~p~s~Dlv~~~~~~ 425 (506)
....+||.|||.|..+..|.-+- .-.|.-+|..+..++.|.+. .-++ .+..=-++|..-+..||+|.+.-++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46789999999999999887653 24567777888999999843 2122 2211113333223799999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------h-----hHHHHHHHHhcCCceEEEeecCCC
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------D-----EIIKVKKIVGGMRWDTKMVDHEDG 482 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------~-----~~~~~~~~~~~~~w~~~~~~~~~~ 482 (506)
.|+.+ .++...|......|+|+|.++|.+.. + ..+.++++++++++++...+...|
T Consensus 133 ghLTD-~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 133 GHLTD-EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp GGS-H-HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred ccCCH-HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 87763 36788999999999999999995432 1 568899999999999877665544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=77.38 Aligned_cols=119 Identities=11% Similarity=0.153 Sum_probs=81.4
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH----hcCccceeccccccCC---CCCCceeEEEEcccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGLIGIYHDWCEAFS---TYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~----~rg~~~~~~~~~~~~~---~~p~s~Dlv~~~~~~~~ 427 (506)
+|||+|||-|.+...|++.+.. ..++++|-|+..+..|. .+|+...+..-..++- +.+..||+|+=-+.+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 8999999999999999998743 45999999999887543 3454321211112221 24478888886554442
Q ss_pred ---ccC--cCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceE
Q 010592 428 ---YKD--KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 428 ---~~~--~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~ 474 (506)
... ...+...+--+.++|+|||.|+|+--+=..++|.+.+..-++..
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEY 200 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEE
Confidence 111 11234577888999999999999877766777888777777663
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.7e-06 Score=84.77 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=77.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~ 162 (506)
+.+.+.+.+++... .+.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...++ ++.+...|+..+..
T Consensus 159 ~~l~~~v~~~l~~~--~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 159 AQLYATARDWVREL--PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHH
Confidence 45555555665322 2458999999999999999987 4889999987765443 44444555 36788888765432
Q ss_pred -CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCC
Q 010592 163 -ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 163 -~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~ 208 (506)
..++||+|++.... . .....+.++...++|++.++++..+..
T Consensus 236 ~~~~~~D~Vv~dPPr---~-G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 236 AQGEVPDLVLVNPPR---R-GIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred hcCCCCeEEEECCCC---C-CccHHHHHHHHHcCCCeEEEEECCccc
Confidence 34579999987431 1 112233344455789999999987763
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=92.21 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=81.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-cc---------ceecccccc----CCCCCCcee
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI---------GIYHDWCEA----FSTYPRTYD 417 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~---------~~~~~~~~~----~~~~p~s~D 417 (506)
+.++|||+|||+|..+..+.+.+ .+.+|+.+|.+++|++.+++.- +. ..++-.+++ +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45789999999999998888753 2368999999999999998731 10 111111222 122458999
Q ss_pred EEEEccccccccC--cCCHHHHHHHHhhhccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEE
Q 010592 418 LIHAHGLFSLYKD--KCNIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 418 lv~~~~~~~~~~~--~~~~~~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~ 475 (506)
+|.++........ +---+.++.++.|.|||||.+++... .+....+.+.+++.++.+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 9999643221110 11113588999999999999999532 3344566667777777443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.6e-07 Score=84.88 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=65.6
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC--
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-- 413 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-- 413 (506)
+.+++..+...+..+|||||||+|.+++.|+.-...+..|+.+|..+..++.|.++ |+ ..+...+.+. ..++
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccC
Confidence 34455555555667899999999999998876322235789999998888888776 22 1222222222 2233
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
..||.|+++.... .++ .++.+-|||||++++-
T Consensus 140 apfD~I~v~~a~~------~ip---~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 140 APFDRIIVTAAVP------EIP---EALLEQLKPGGRLVAP 171 (209)
T ss_dssp -SEEEEEESSBBS------S-----HHHHHTEEEEEEEEEE
T ss_pred CCcCEEEEeeccc------hHH---HHHHHhcCCCcEEEEE
Confidence 7899999965554 222 4455679999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=74.31 Aligned_cols=104 Identities=18% Similarity=0.074 Sum_probs=70.3
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccc-cCCCCCC
Q 010592 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KMPYASR 165 (506)
Q Consensus 92 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~-~lp~~~~ 165 (506)
....|.. .++..++|||||+|+.+..++.. .++++|-++..+.... +++..-+.+ +....+++- .|+-.+
T Consensus 26 ~ls~L~~--~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~- 101 (187)
T COG2242 26 TLSKLRP--RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP- 101 (187)
T ss_pred HHHhhCC--CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-
Confidence 4455533 34559999999999999998832 5888888765443322 333344454 444444542 333222
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||.|+.... .....+|+.+...|||||.++...
T Consensus 102 ~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 102 SPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 7999999775 234789999999999999999974
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=88.44 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=70.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---------cc----eeccc-cccCCC-----C
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IG----IYHDW-CEAFST-----Y 412 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---------~~----~~~~~-~~~~~~-----~ 412 (506)
...+|||||||-||-..-....+ +..++++|++...|+.|.+|-- .. ..... +..+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56789999999999766666654 4689999999999999999860 00 01111 111211 2
Q ss_pred C---CceeEEEEccccccccCc-CCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 413 P---RTYDLIHAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 413 p---~s~Dlv~~~~~~~~~~~~-~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+ ..||+|-|..+|++.-.- ......|..+...|||||+||.+-..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2 599999999999865533 24567999999999999999998654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.6e-06 Score=77.09 Aligned_cols=121 Identities=8% Similarity=-0.007 Sum_probs=73.8
Q ss_pred hhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecc
Q 010592 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGT 157 (506)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~ 157 (506)
....+...+.+.+.+... ..+.+|||+|||+|.++..++.+ .++++|+++..+..+. +.+...+. ++.+...|.
T Consensus 34 Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~-~Nl~~~~~~~v~~~~~D~ 111 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI-KNLATLKAGNARVVNTNA 111 (199)
T ss_pred CcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEEchH
Confidence 344566656666655311 23458999999999999865443 5888999875443332 33333343 356666665
Q ss_pred cc-CCCCCCCeeEEEEcCcccccCCChHHHHHHHHH--hcCCCeEEEEEcCC
Q 010592 158 IK-MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDR--VLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~-lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~r--vLkPGG~li~~~p~ 206 (506)
.. ++...++||+|++..-+.. .-...++..+.. +|+|+|.++++.+.
T Consensus 112 ~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 43 3323457999999875311 112455555554 37999999998654
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-06 Score=79.85 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=74.4
Q ss_pred hhhhhhhhhHHHHHHHH-HHhhhcCCCCCceEEeecCcccH----HHHHHHh----CCCeEEEEeecCCCcccHHHHHhc
Q 010592 326 SYQEDSNKWKKHVNAYK-KINRLLDSGRYRNIMDMNAGFGG----FAAAIQS----SKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 326 ~f~~d~~~W~~~v~~y~-~~~~~~~~~~~r~vLD~gcG~G~----~~~~l~~----~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.|-.|...|+....... .++.....++.-+|..+||+||. +|..|.+ ...|...+.++|+++.+|+.|.+
T Consensus 4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~- 82 (196)
T PF01739_consen 4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA- 82 (196)
T ss_dssp -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-
T ss_pred cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-
Confidence 46666777776555533 23322333445689999999997 3444444 23446899999999999998864
Q ss_pred Cccc------------------------------------eeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHH
Q 010592 397 GLIG------------------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLE 440 (506)
Q Consensus 397 g~~~------------------------------------~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e 440 (506)
|..+ ..|++.+ .+...+.||+|.|-+||-+.. ...-..++..
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHH
Confidence 3200 1122222 111238999999999988554 3345789999
Q ss_pred HhhhccCCcEEEEEeCh
Q 010592 441 MDRILRPEGAIIIRDEV 457 (506)
Q Consensus 441 ~~RvLrPgG~~ii~d~~ 457 (506)
+++.|+|||+|++-...
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999996543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-06 Score=83.34 Aligned_cols=122 Identities=9% Similarity=0.048 Sum_probs=87.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Cc--------------cceeccccccCCCCC----
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GL--------------IGIYHDWCEAFSTYP---- 413 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~--------------~~~~~~~~~~~~~~p---- 413 (506)
..+||+.|||.|.-+..|++.| ..|+++|+|+..++.++++ ++ -..+..+|.+|=.++
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4589999999999999999988 5799999999999987663 11 113344566665553
Q ss_pred --CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE----eCh----h---hHHHHHHHHhcCCceEEEeec
Q 010592 414 --RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR----DEV----D---EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 414 --~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~----d~~----~---~~~~~~~~~~~~~w~~~~~~~ 479 (506)
+.||+|+=..+|.++. ...=......|.++|+|||.+++- +.. + ..++|++++. -.|++..+..
T Consensus 121 ~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~-~~~~i~~l~~ 197 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFS-AKIKFELIDS 197 (226)
T ss_pred ccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhcc-CCceEEEeee
Confidence 4799999878887664 222357999999999999988872 111 1 4567777764 4566555443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=81.47 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=69.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-c------ceecccccc----CCCC-CCceeE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-I------GIYHDWCEA----FSTY-PRTYDL 418 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~------~~~~~~~~~----~~~~-p~s~Dl 418 (506)
...++||+||||.|+.+..+++.+ .+.+|+.+|+++++++.+++.-. . ..+.-.+++ +... ++.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 346789999999999999998763 35688899999899999877521 0 011112233 2223 378999
Q ss_pred EEEccccccccCcCC--HHHHHHHHhhhccCCcEEEE
Q 010592 419 IHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 419 v~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii 453 (506)
|.++....... ... -..++..+.+.|+|||.+++
T Consensus 169 Ii~D~~dp~~~-~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 169 IIVDSSDPVGP-AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEcCCCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99854332111 111 24689999999999999987
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-06 Score=80.47 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=88.0
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Cccc--------------eeccccccCCCCC-
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIG--------------IYHDWCEAFSTYP- 413 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~~--------------~~~~~~~~~~~~p- 413 (506)
.....+||+.|||.|.-+..|+++| .+|+++|+|+..++.++++ ++.. .+..+|.+|=.++
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3445689999999999999999997 6999999999999988554 4311 1233456664443
Q ss_pred ---CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE-E-e-----C--hh---hHHHHHHHHhcCCceEEEee
Q 010592 414 ---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII-R-D-----E--VD---EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 414 ---~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii-~-d-----~--~~---~~~~~~~~~~~~~w~~~~~~ 478 (506)
+.||+|+=..+|..+. ...=+....-|.++|||||.+++ + + . .+ ..++|++++. -+|++....
T Consensus 112 ~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred hhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 5799999776776543 44446899999999999999433 1 1 1 11 5688888888 888877554
Q ss_pred c
Q 010592 479 H 479 (506)
Q Consensus 479 ~ 479 (506)
.
T Consensus 190 ~ 190 (218)
T PF05724_consen 190 E 190 (218)
T ss_dssp E
T ss_pred c
Confidence 4
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=78.68 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
...++..+.+.. ..++|||+|||+|+-+..++.. .++++|+++.....+. +...+.++. +.+..+++
T Consensus 56 ~g~~L~~l~~~~-----~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 56 EGLFLSMLVKIM-----NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred HHHHHHHHHHHh-----CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccH
Confidence 344555555544 2458999999999877766543 4899999885554333 333344443 55666665
Q ss_pred ccC-C-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 158 IKM-P-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 158 ~~l-p-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
... + .+.++||+|++..- .+....++.++.+.|||||.+++.
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 332 2 12468999998531 122367899999999999998875
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=76.86 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=62.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeE-EEEecccc-----C
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIK-----M 160 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~-~~~~d~~~-----l 160 (506)
..+.+.++. ...+.+|||+|||+|.|+..++++ .++++|+++.++..... ....+. +...++.. .
T Consensus 64 ~~~l~~~~~-~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~-----~~~~v~~~~~~ni~~~~~~~~ 137 (228)
T TIGR00478 64 KEALEEFNI-DVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR-----QDERVKVLERTNIRYVTPADI 137 (228)
T ss_pred HHHHHhcCC-CCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh-----cCCCeeEeecCCcccCCHhHc
Confidence 444444432 234568999999999999999987 38899998765544222 222211 22223332 2
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+..-..||+++++.++ .+..+.+.|+| |.+++-.
T Consensus 138 ~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 138 FPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 2222468877776543 47889999999 8777655
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.5e-06 Score=86.49 Aligned_cols=119 Identities=13% Similarity=0.218 Sum_probs=79.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC----C--C-CCce
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS----T--Y-PRTY 416 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~----~--~-p~s~ 416 (506)
+...+..+|||+|||+|.++..|++.. ..|+++|.++.|++.|.+. |+ ..+...+.++. . + +++|
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCC
Confidence 333344689999999999999998864 5899999999999988764 22 22333334332 1 2 3689
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
|+|.++- ++..+...+..+.+ |+|++.++|+-... ....+..+. ..+|++..+.
T Consensus 369 D~Vi~dP------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~-~~gY~l~~i~ 423 (443)
T PRK13168 369 DKVLLDP------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLV-EAGYRLKRAG 423 (443)
T ss_pred CEEEECc------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHh-hCCcEEEEEE
Confidence 9998821 23345566766655 69999999985543 444555443 4578876443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.9e-06 Score=86.42 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc--
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-- 159 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~-- 159 (506)
.+.+.+.+.+.+... ++.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...+. ++.+...|...
T Consensus 277 ~~~l~~~~~~~l~~~--~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 277 NEKLVDRALEALELQ--GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHhccC--CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHH
Confidence 355556666666432 3358999999999999999875 58999998877654443 3333444 46677777643
Q ss_pred --CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 160 --MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 --lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++.+++||+|+....- ..-...+++.+.+ |+|++.++++..|.
T Consensus 354 ~~~~~~~~~~D~vi~dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc~p~ 399 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPR---KGCAAEVLRTIIE-LKPERIVYVSCNPA 399 (431)
T ss_pred HHHHhcCCCCCEEEECcCC---CCCCHHHHHHHHh-cCCCEEEEEcCCHH
Confidence 23445689999975432 1112566666554 89999888886544
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.6e-06 Score=80.16 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=66.8
Q ss_pred CceEEeecCcccHHHHHHHhCC--CeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~--~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~~~~ 428 (506)
..+|||+|||+|.++..++..- ....+|+++|+++.++..|.+... ..+..+.++-.+ +.+||+|.++-=|.-.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--EATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--CCEEEEcchhcccccCCccEEEECCCCCCc
Confidence 3479999999999999887531 013589999999999999986531 223334555433 3799999997655522
Q ss_pred c-----Cc---CC-HHHHHHHHhhhccCCcEEEE
Q 010592 429 K-----DK---CN-IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 429 ~-----~~---~~-~~~~l~e~~RvLrPgG~~ii 453 (506)
. .+ .. ...++....|+|+||+. |+
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 11 12 23588888897777775 66
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-06 Score=77.11 Aligned_cols=103 Identities=8% Similarity=0.026 Sum_probs=66.4
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC---CceeEEEE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP---RTYDLIHA 421 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p---~s~Dlv~~ 421 (506)
..+......+|||+|||+|.++..|++++ ..|+++|.++.|++.+.++.. ...+.-...++..++ ..||.|.+
T Consensus 7 ~~~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~ 83 (169)
T smart00650 7 RAANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVG 83 (169)
T ss_pred HhcCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEE
Confidence 33444455689999999999999999874 589999999999999887631 111222234444433 46999998
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.-++.. ...+..++.+. .+.++|.+++..
T Consensus 84 n~Py~~~--~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 84 NLPYNIS--TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred CCCcccH--HHHHHHHHhcC--CCcceEEEEEEH
Confidence 6544311 11223333322 256899998854
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.8e-05 Score=89.61 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=69.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC-----------------CCeEEEEeccccCC
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG-----------------VPAVIGVLGTIKMP 161 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~-----------------~~~~~~~~d~~~lp 161 (506)
+.+|||+|||+|.++..|+.+ .++++|+++..+..+..+... ++ .++.+...|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhhc
Confidence 458999999999999999875 489999999776555544433 21 13566666764322
Q ss_pred CC-CCCeeEEEEcCcccccC---------------------------------CCh----HHHHHHHHHhcCCCeEEEEE
Q 010592 162 YA-SRAFDMAHCSRCLIPWG---------------------------------AND----GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 162 ~~-~~sfDlV~~~~~l~~~~---------------------------------~~~----~~~l~e~~rvLkPGG~li~~ 203 (506)
-. ...||+|+|+-..+.-. .+. ..++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 23699999975543110 111 36778888999999999998
Q ss_pred cC
Q 010592 204 GP 205 (506)
Q Consensus 204 ~p 205 (506)
..
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 54
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=86.75 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHH--HHH-H----cCCCeEEEEecccc-CCCCCCCeeE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQ--FAL-E----RGVPAVIGVLGTIK-MPYASRAFDM 169 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~--~a~-~----~~~~~~~~~~d~~~-lp~~~~sfDl 169 (506)
++++|||||||+|..+..++++ .++++|+++.++..+... +.. . ...++.+...|... +...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4568999999999999988765 478888877655433321 110 0 12345666677654 2333568999
Q ss_pred EEEcCcccccCCCh-----HHHHHHHHHhcCCCeEEEEEcC
Q 010592 170 AHCSRCLIPWGAND-----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~-----~~~l~e~~rvLkPGG~li~~~p 205 (506)
|++.... +..+.. ..+++.+.+.|||||.+++...
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9997532 222111 3688999999999999998753
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-06 Score=82.65 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=78.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC----CCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY----PRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~----p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|+.++ ..|+++|.++.|++.|.+. |+ ..++..+.++..+ +..||+|.++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 3679999999999999999865 5899999999999988654 33 2333444444332 2579999984
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
.++..+...+.++..-++|++.++++.... ..+.++.+ -+|++....
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEE
Confidence 234444445555556689999999976554 34455554 478866443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.4e-06 Score=91.17 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=71.3
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccC-CCCCCCeeEEEEcCc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKM-PYASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~l-p~~~~sfDlV~~~~~ 175 (506)
+.+|||+|||+|.++..++.. .|+++|+|+..+..+..+.. .+++ .+.+...|..+. .-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 458999999999999999876 38899999877755554443 3444 366777776432 111468999999643
Q ss_pred ccccC----------CChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 176 LIPWG----------ANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~----------~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...-. .+...++..+.++|+|||.++++...
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 21100 11246788889999999999987643
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=85.25 Aligned_cols=123 Identities=11% Similarity=0.144 Sum_probs=80.7
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCC---C
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STY---P 413 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~---p 413 (506)
...+...+..+|||+|||+|.++..|++.. ..|+++|.++.|++.|.+. |+ ..++..+.++ +.+ +
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcC
Confidence 333333444689999999999999998864 4799999999999988764 22 2222223332 222 2
Q ss_pred CceeEEEEccccccccCcCC-HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEee
Q 010592 414 RTYDLIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~-~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~ 478 (506)
++||+|..+- ++.. ...++.++.+ |+|+|.++++........--..+...+|++..+.
T Consensus 361 ~~~D~vi~dP------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 361 QIPDVLLLDP------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred CCCCEEEECc------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEEE
Confidence 5799998711 1223 3566666655 8999999998766555444444556678866543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=74.80 Aligned_cols=120 Identities=17% Similarity=0.071 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHhhC----CCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC----CCe
Q 010592 83 QGADKYIDQLASVI----PIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG----VPA 150 (506)
Q Consensus 83 ~~~~~~~~~l~~~l----~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~----~~~ 150 (506)
+++..+.+.+.+.. ......+.+|||+|||+|..+..++.. .|+.+|..+ .-+.....+..++ ..+
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccc
Confidence 44444444454432 112234569999999999777777665 588899876 3333434444332 233
Q ss_pred EEEEecccc-C---CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 151 VIGVLGTIK-M---PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 151 ~~~~~d~~~-l---p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+...+-.. . ....++||+|+++.++.. ....+.++.-+.++|+|+|.++++.+
T Consensus 100 ~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 100 SVRPLDWGDELDSDLLEPHSFDVILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEE--TTS-HHHHHHS-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCcEEEecCcccccccccccCCEEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 444433211 1 123468999999999843 44448899999999999999777643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=84.38 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=67.6
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccCC----CCCCCeeEEEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKMP----YASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~lp----~~~~sfDlV~~ 172 (506)
+.+|||+|||+|.++..++.. .++++|+++..+..+. +.+..+++ .+.+..+|+.... ...++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 458999999999998775544 4899999987665544 33444444 3567777765431 13568999999
Q ss_pred cCcccccCCC----------hHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGAN----------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~----------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..... ... -..++..+.++|+|||.|++.+
T Consensus 300 DPP~f--~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKF--VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCC--CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 75431 121 1244556789999999999865
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=76.30 Aligned_cols=140 Identities=24% Similarity=0.264 Sum_probs=92.3
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCcc----c-eeccccccCCCCC-Cce
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLI----G-IYHDWCEAFSTYP-RTY 416 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~----~-~~~~~~~~~~~~p-~s~ 416 (506)
.++.....+|||.+.|.|.+|..-.++|. ..|..++..++.|+.|.- |++. . +.-|..+-+..++ .||
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 45555677899999999999999888874 356666777788876643 2331 1 1122234455677 789
Q ss_pred eEE-EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe--------ChhhHHHHHHHHhcCCceEEEeecCCCCCCCe
Q 010592 417 DLI-HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD--------EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE 487 (506)
Q Consensus 417 Dlv-~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 487 (506)
|+| |=--=||+.. .---+.+-.|++|||||||.++=-- -.+....+.+.+.+.++.+.....+.
T Consensus 207 DaIiHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~------ 279 (287)
T COG2521 207 DAIIHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREA------ 279 (287)
T ss_pred ceEeeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhc------
Confidence 965 4433444333 1122578999999999999887621 22366788888999999965544442
Q ss_pred EEEEEEec
Q 010592 488 KILVAVKQ 495 (506)
Q Consensus 488 ~~l~~~k~ 495 (506)
.-++|+|+
T Consensus 280 ~gv~A~k~ 287 (287)
T COG2521 280 LGVVAVKP 287 (287)
T ss_pred cceEEecC
Confidence 23677764
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-05 Score=75.36 Aligned_cols=120 Identities=18% Similarity=0.259 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhhCCCC-CCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEe---
Q 010592 84 GADKYIDQLASVIPIK-NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVL--- 155 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~--- 155 (506)
..+.+++.+.+.+... ...+..+||+|||+|..+..++.. .++++|.|+..+.-+. ++++...+...+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~ 207 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNI 207 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecc
Confidence 3477777777776422 123347999999999988888764 4788887764442222 233332333222222
Q ss_pred -cc---ccCCCCCCCeeEEEEcCcccccCCChH--------------------------HHHHHHHHhcCCCeEEEEEcC
Q 010592 156 -GT---IKMPYASRAFDMAHCSRCLIPWGANDG--------------------------RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 156 -d~---~~lp~~~~sfDlV~~~~~l~~~~~~~~--------------------------~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ...+...+.+|+++|+.-.+. .+|.. .++.-+.|.|+|||.+.+...
T Consensus 208 me~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 208 MESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 11 233456789999999875532 11111 456778899999999999854
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=82.50 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=78.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccCCC----C---CCceeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAFST----Y---PRTYDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~~~----~---p~s~Dlv~ 420 (506)
..+|||+|||+|+|+.+.+..+ ...|+++|.++.+++.|.+. |+. ..+...+.++-. + .++||+|.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4679999999999987765544 24899999999999988764 331 122223333221 1 35899999
Q ss_pred EccccccccCc-------CCHHHHHHHHhhhccCCcEEEEEeC---h---hhHHHHHHHHhcCCceEEEee
Q 010592 421 AHGLFSLYKDK-------CNIEDILLEMDRILRPEGAIIIRDE---V---DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 421 ~~~~~~~~~~~-------~~~~~~l~e~~RvLrPgG~~ii~d~---~---~~~~~~~~~~~~~~w~~~~~~ 478 (506)
++-=.- ...+ .....++....++|+|||.|+...- + ...+.+.+-+...+-++.++.
T Consensus 299 lDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 299 MDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred ECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 952221 0111 1234556667899999999998432 2 244555555677777766654
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=80.26 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=68.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEE--EEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~--~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.+++|||||||+|.++...++. .|.++|.|. +..-+.+.+..++....+ ..+.++.+.+|-...|+|++-+.-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4569999999999988888876 478888864 445556677777766433 344455555556789999996654
Q ss_pred cccC--CChHHHHHHHHHhcCCCeEEEE
Q 010592 177 IPWG--ANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~--~~~~~~l~e~~rvLkPGG~li~ 202 (506)
..+. .-....|-.-.+.|+|||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2211 1124566667899999998764
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.5e-05 Score=77.34 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=86.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc----cccCCCC-----CC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW----CEAFSTY-----PR 414 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~----~~~~~~~-----p~ 414 (506)
+...+.++||++|+|+|..+.+|+..-.....|+.+|.+++++++|.+- |+-..+.-. .+-++.+ ++
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 3444577999999999999998876311124699999999998887553 442111111 1112222 36
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------h----hHHHHHHHHhcCCceEEEee
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------D----EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~----~~~~~~~~~~~~~w~~~~~~ 478 (506)
+||+|+... +.......+....+.|||||.+++-+.+ . ..+-.+.+...=++++.+..
T Consensus 194 ~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP 267 (278)
T PLN02476 194 SYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP 267 (278)
T ss_pred CCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE
Confidence 899999822 1224567889999999999999983221 0 12222334667788888876
Q ss_pred cCCCCCCCeEEEEEEec
Q 010592 479 HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 479 ~~~~~~~~~~~l~~~k~ 495 (506)
..|| +++++|+
T Consensus 268 igDG------l~i~~K~ 278 (278)
T PLN02476 268 IGDG------MTICRKR 278 (278)
T ss_pred eCCe------eEEEEEC
Confidence 6654 5666663
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.6e-05 Score=80.14 Aligned_cols=115 Identities=14% Similarity=0.048 Sum_probs=74.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC-
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP- 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp- 161 (506)
+.+.+.+.+++... .+.+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+. ++.+...|.....
T Consensus 219 ~~l~~~~~~~l~~~--~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~ 295 (374)
T TIGR02085 219 AQLYATARQWVREI--PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFAT 295 (374)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHH
Confidence 44445555554211 2358999999999999999876 4889999886664333 44444454 4677777765432
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
-..++||+|++.... ..-...++..+. .++|++.++++..|.
T Consensus 296 ~~~~~~D~vi~DPPr---~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 296 AQMSAPELVLVNPPR---RGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred hcCCCCCEEEECCCC---CCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 122469999987543 221245555554 479999999997655
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=8e-05 Score=71.10 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEE-ec
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGV-LG 156 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~-~d 156 (506)
.-.++..+++.. ..++|||||.+.|+-+.+|+.. .++++|+++.....+...++ +.|+. +.... +|
T Consensus 47 ~g~~L~~L~~~~-----~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLARLS-----GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLLGGD 120 (219)
T ss_pred HHHHHHHHHHhc-----CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEecCc
Confidence 344545555444 3458999999999999998864 38999998866654444443 33443 33333 24
Q ss_pred cc-cCC-CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 157 TI-KMP-YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 157 ~~-~lp-~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.. .+. ...++||+|+.- +...+-..++..+.++|+|||.+++.
T Consensus 121 al~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 32 222 457899999974 23334478999999999999999985
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=76.81 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=75.0
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccceecccccc----CCCC-C-CceeEEEEcc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDWCEA----FSTY-P-RTYDLIHAHG 423 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~~~~~~~~~----~~~~-p-~s~Dlv~~~~ 423 (506)
..+|+||||.|.|...|+.+.- ..|+++++....-+..|.+ .++. ++.-.|.+ ++.+ + +|.|-|+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i-- 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYI-- 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEE--
Confidence 3699999999999999998642 3588999888776665544 4541 22222332 2333 3 59999887
Q ss_pred ccc-------cccCcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHH-HHHHHhc
Q 010592 424 LFS-------LYKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIK-VKKIVGG 469 (506)
Q Consensus 424 ~~~-------~~~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~-~~~~~~~ 469 (506)
.|+ |.+.|---+..|.++.|+|+|||.|.+. |..++.+. +......
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 233 2333333357999999999999999995 55556666 5555444
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5e-06 Score=78.11 Aligned_cols=123 Identities=12% Similarity=0.216 Sum_probs=90.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccceeccccc-cCCCCCCceeEEEEccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCE-AFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~~~~~~~~-~~~~~p~s~Dlv~~~~~~~~~ 428 (506)
.-.++|+|||.|..+.+|...+ +..++-+|.|..|++.++.-. +...+..--| -+++-+++||||.++..+++.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 4469999999999999999987 478899999999999887763 3222222223 344344999999995555422
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEE----eCh-------------------------hhHHHHHHHHhcCCceEEEeec
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIR----DEV-------------------------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~----d~~-------------------------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.+++..|...+-+|||.|.||-+ |++ ..+..+-.++.+++++...+|+
T Consensus 151 ---NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDt 227 (325)
T KOG2940|consen 151 ---NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDT 227 (325)
T ss_pred ---ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecc
Confidence 36788999999999999999872 221 1445667789999999776665
Q ss_pred C
Q 010592 480 E 480 (506)
Q Consensus 480 ~ 480 (506)
+
T Consensus 228 D 228 (325)
T KOG2940|consen 228 D 228 (325)
T ss_pred c
Confidence 4
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.7e-05 Score=76.73 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=65.9
Q ss_pred CCCEEEEECCCCC----hhHHHHhhC---------CcEEEecCccchHHHHHH----HHHHcCCC---------------
Q 010592 102 TVRTALDTGCGVA----SWGAYLWSR---------NVIAMSFAPRDSHEAQVQ----FALERGVP--------------- 149 (506)
Q Consensus 102 ~~~~VLDiGCG~G----~~~~~L~~~---------~v~~vdis~~di~~~~~~----~a~~~~~~--------------- 149 (506)
..-+|+-+||++| +++..|.+. .|.|+||+...+.+|..- ....++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 344444332 367777766544443321 00101111
Q ss_pred ----------eEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 150 ----------AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 ----------~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.|...+...-++..+.||+|+|-++++++.... ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2333333333332456799999999999986544 789999999999999999953
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.5e-05 Score=77.70 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=73.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCC-eE-EEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP-AV-IGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~-~~-~~~~d~~~lp~~~~ 165 (506)
..+.++.... .|..|||-=||||+++....-.| +++.|++..|+..+..++-.- +++ .. ....|+..+|++++
T Consensus 187 R~mVNLa~v~--~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y-~i~~~~~~~~~Da~~lpl~~~ 263 (347)
T COG1041 187 RAMVNLARVK--RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYY-GIEDYPVLKVLDATNLPLRDN 263 (347)
T ss_pred HHHHHHhccc--cCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhh-CcCceeEEEecccccCCCCCC
Confidence 3344444333 34589999999999988876665 555555544443333332221 222 32 33448999999999
Q ss_pred CeeEEEEcCccc-----ccC--CCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 166 AFDMAHCSRCLI-----PWG--AND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~-----~~~--~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||.|++-.-.= .-. ++. ..+|+.+.++||+||++++..|
T Consensus 264 ~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999999843210 100 111 5789999999999999999987
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.4e-05 Score=69.35 Aligned_cols=110 Identities=18% Similarity=0.116 Sum_probs=77.7
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC-----cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP- 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~-----v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp- 161 (506)
..+.+++.+ ...++.-|||+|.|+|-++..++.++ +++++.++ .....-.+......+..+|+..+.
T Consensus 36 lA~~M~s~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~-----dF~~~L~~~~p~~~ii~gda~~l~~ 108 (194)
T COG3963 36 LARKMASVI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP-----DFVCHLNQLYPGVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHhcc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH-----HHHHHHHHhCCCccccccchhhHHH
Confidence 334566666 34456689999999999999999985 56666655 333344444445556666765543
Q ss_pred ----CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 162 ----YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ----~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+..||.|+|..-+..++.+. -++|+++...|.+||.++.-.
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 5677899999976665554444 588999999999999998754
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.7e-05 Score=65.86 Aligned_cols=99 Identities=27% Similarity=0.383 Sum_probs=65.3
Q ss_pred EEEECCCCChh--HHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecccc--CCCCC-CCeeEEEEcCccc
Q 010592 106 ALDTGCGVASW--GAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK--MPYAS-RAFDMAHCSRCLI 177 (506)
Q Consensus 106 VLDiGCG~G~~--~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~--lp~~~-~sfDlV~~~~~l~ 177 (506)
+||+|||+|.. ...+... .++++|+++.++......... .... ..+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444332 356677776555441111111 2222 3556666654 78877 589999 655555
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5444 6889999999999999999976443
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=80.04 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=66.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCc---cceeccccccCCCCC-CceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL---IGIYHDWCEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~---~~~~~~~~~~~~~~p-~s~Dlv~~~~~ 424 (506)
.++|||+|||||-++..-++.| ..+|.++|.| ++.+.|.+ -++ +..+....|++ .+| ..+|+|.+-..
T Consensus 61 dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG--ARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC--cceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 5679999999999887777766 4789999998 77775544 343 44444455666 567 99999998211
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
=..+....-+..+|..=++.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1111112234568888899999999765
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.5e-05 Score=76.12 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhhCCC------CCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--e
Q 010592 83 QGADKYIDQLASVIPI------KNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--A 150 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~------~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~ 150 (506)
.+.-.|+..+.+++.. ..+...+|||||||+|.....|+.+ .++++|+++..+..++...+...++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 3446677777777632 1234568999999999877777654 48999998876655554444331343 3
Q ss_pred EEEE-eccccC----CCCCCCeeEEEEcCcccc
Q 010592 151 VIGV-LGTIKM----PYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 151 ~~~~-~d~~~l----p~~~~sfDlV~~~~~l~~ 178 (506)
.+.. .+...+ ..+.+.||+|+|+--++.
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 3322 222221 124678999999987643
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.5e-06 Score=76.61 Aligned_cols=120 Identities=21% Similarity=0.205 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcC---CCeEEEEecc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERG---VPAVIGVLGT 157 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~---~~~~~~~~d~ 157 (506)
+.+.+.+.+.+.-......+.+|||...|-|+.+...+++| |.+++.+|..+.-+.++-- .++ ..+.+..+|+
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPw-Sr~l~~~~i~iilGD~ 194 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPW-SRELFEIAIKIILGDA 194 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCC-CccccccccEEecccH
Confidence 34566666665554445567799999999999999999885 5677777755433222100 011 1245566676
Q ss_pred ccC--CCCCCCeeEEEEcCcccccCCC--hHHHHHHHHHhcCCCeEEEEEc
Q 010592 158 IKM--PYASRAFDMAHCSRCLIPWGAN--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~l--p~~~~sfDlV~~~~~l~~~~~~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++ .|++.|||+|+--..-...... ...+..|++|+|||||.++-.+
T Consensus 195 ~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 195 YEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred HHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 544 4789999999853221111111 1689999999999999998754
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=7e-05 Score=72.17 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=82.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHA 421 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~ 421 (506)
..-+...+|||.|.|+|.++++|+..-.....|+..+..++.++.|.+. |+...+...-.++.. .+..||.|+.
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEE
Confidence 3444556899999999999999995333346899999999999988774 332211111122222 2369999998
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCCce
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~ 473 (506)
+-.++-.+|..++.+|||||.+++--+ .+.++++-..++..+|.
T Consensus 170 --------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 170 --------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred --------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 777888999999999999999998543 34444444445556775
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.4e-05 Score=72.16 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=71.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~ 162 (506)
..|...+.+.+ +.+|||.|.|+|+++..|+.. .|.+.|+.......+..++. ..++. +.+...|....-|
T Consensus 30 ~~I~~~l~i~p--G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 30 SYILMRLDIRP--GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHTT--T--T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG--
T ss_pred HHHHHHcCCCC--CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceecccc
Confidence 34666665554 449999999999999999864 37888886644444433333 33443 6677777754333
Q ss_pred C---CCCeeEEEEcCcccccCCChHHHHHHHHHhc-CCCeEEEEEcCCC
Q 010592 163 A---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVL-RPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~---~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvL-kPGG~li~~~p~~ 207 (506)
. ++.||.|+.-. ++|..++..+.++| ||||++++-.|..
T Consensus 107 ~~~~~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 107 DEELESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp STT-TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccccCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 2 36899998732 44667899999999 8999999887754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.4e-05 Score=76.22 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=59.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++......... ..++.+..+|+..++++
T Consensus 15 ~~~~~~iv~~~~~~--~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDT--DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCC--CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch
Confidence 44556666666443 3458999999999999999987 488899987655433322211 23467777888777765
Q ss_pred CCCeeEEEEcCcc
Q 010592 164 SRAFDMAHCSRCL 176 (506)
Q Consensus 164 ~~sfDlV~~~~~l 176 (506)
.||.|+++..+
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999998764
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.9e-05 Score=76.67 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=75.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---------cceecccc---------ccCCCCC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IGIYHDWC---------EAFSTYP 413 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---------~~~~~~~~---------~~~~~~p 413 (506)
+..-++|||||-||-....-+.+ ...++++|++.-.++.|..|.- +-.....+ +.+++-+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 34569999999999765555544 3579999999888998888742 10111111 1233222
Q ss_pred CceeEEEEcccccccc-CcCCHHHHHHHHhhhccCCcEEEEEeChh--hHHHHHHH
Q 010592 414 RTYDLIHAHGLFSLYK-DKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKI 466 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~-~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--~~~~~~~~ 466 (506)
..||+|-|..+|+..- .-.....+|..+.+-|||||++|-+-+.. ++..|+..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 4499999999998543 22345579999999999999999876543 44445444
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.3e-06 Score=81.44 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=70.2
Q ss_pred CCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCC
Q 010592 103 VRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~ 182 (506)
+..+||+|||.|-++..=-.-.+.+.|++ ...+..++..+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c-----~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLC-----TGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchh-----hhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 55899999999965432211134555554 3333444444432 56677999999999999999999999998765
Q ss_pred h--HHHHHHHHHhcCCCeEEEEEc
Q 010592 183 D--GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 183 ~--~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ..+++|+.|+|||||...+.+
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 4 689999999999999987754
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=64.56 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=51.3
Q ss_pred CCCceEEeecCcccH-HHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--CceeEEEE
Q 010592 351 GRYRNIMDMNAGFGG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHA 421 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~-~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--~s~Dlv~~ 421 (506)
.+..+|||||||+|. +|..|++.| .+|+++|.++..++.+.+++......|+.+ |... ..+|+|.+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liys 83 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYS 83 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEE
Confidence 344679999999996 898999876 589999999999999999887555533332 1122 78999999
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.5e-05 Score=74.02 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=66.2
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc-CC-C----CCCCeeE
Q 010592 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK-MP-Y----ASRAFDM 169 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~-lp-~----~~~sfDl 169 (506)
.++|||||+|+|+.+.+++.. .++++|.++.....+. ++..+.|.. +.+..+++.. |+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar-~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK-RYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 458999999999999988863 3789999875443333 333344553 5666666532 22 1 2368999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99743 1222368899999999999999885
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.4e-05 Score=71.50 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=72.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~ 158 (506)
..++..+.+.. ..++||||||++|+-+.++++. .++++|+++.... .+.++..+.|. .+.+..+++.
T Consensus 34 g~lL~~l~~~~-----~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 34 GQLLQMLVRLT-----RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHH-----T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HH
T ss_pred HHHHHHHHHhc-----CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccH
Confidence 44555555554 2458999999999999999864 4899999875443 33334444444 3666666653
Q ss_pred c-CC-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 159 K-MP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 159 ~-lp-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ++ .+.+.||+|+.-. ...+-..++..+.+.|+|||.+++..
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hhHHHHHhccCCCceeEEEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 2 22 1245899999743 22333678899999999999999863
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00017 Score=67.40 Aligned_cols=138 Identities=17% Similarity=0.318 Sum_probs=88.8
Q ss_pred hhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccH--HHHHHHhCCCeEEEEeecCCCcccHH---HHHhc-Cc--c
Q 010592 328 QEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLG---VIYER-GL--I 399 (506)
Q Consensus 328 ~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~--~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~r-g~--~ 399 (506)
.+..+.|.+++.+-..++..+..... +++|||+|-|- .-.++.... .+++-+|....-+. .+..+ |+ +
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~---~~~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPD---LQVTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TT---SEEEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred CCHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCC---CcEEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 34568898888877766666655544 69999999995 233333433 46888887765444 22222 55 2
Q ss_pred ceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe---ChhhHHHHHHHHhcCCceEEE
Q 010592 400 GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD---EVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 400 ~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d---~~~~~~~~~~~~~~~~w~~~~ 476 (506)
.+++...|+ +..+..||+|.| . ...++..++.-+.+.|||||.+++-- ..+.+.+.+...+.+++....
T Consensus 101 ~v~~~R~E~-~~~~~~fd~v~a----R---Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 101 EVINGRAEE-PEYRESFDVVTA----R---AVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp EEEES-HHH-TTTTT-EEEEEE----E---SSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred EEEEeeecc-cccCCCccEEEe----e---hhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 344444444 336699999998 3 33477888888999999999999854 334556666678888887654
Q ss_pred e
Q 010592 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 173 v 173 (184)
T PF02527_consen 173 V 173 (184)
T ss_dssp E
T ss_pred e
Confidence 3
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.8e-05 Score=77.45 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=58.7
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
..++.+.+.+... .+.+|||||||+|.++..|+++ .++++|+++.++........ ...+.+..+|...+++++
T Consensus 29 ~i~~~i~~~l~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQ--PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCC--CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHH
Confidence 3445666666433 3458999999999999999987 58999998866644432221 145777888888877654
Q ss_pred CCeeEEEEcCc
Q 010592 165 RAFDMAHCSRC 175 (506)
Q Consensus 165 ~sfDlV~~~~~ 175 (506)
-.+|.|+++..
T Consensus 104 ~~~~~vv~NlP 114 (272)
T PRK00274 104 LQPLKVVANLP 114 (272)
T ss_pred cCcceEEEeCC
Confidence 33588888754
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.8e-05 Score=71.63 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=68.3
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--Cce
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTY 416 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~ 416 (506)
++..+......+||+||||+|..+|-|++-. ..|+.++..+...+.|+++ |+ .+++..+.+-.. +| ..|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCCCCCCCc
Confidence 4444555566889999999999999998853 4899999887777777654 33 123333444333 55 899
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.|+.+...... +.. +.+-|||||.++|-
T Consensus 140 D~I~Vtaaa~~v------P~~---Ll~QL~~gGrlv~P 168 (209)
T COG2518 140 DRIIVTAAAPEV------PEA---LLDQLKPGGRLVIP 168 (209)
T ss_pred CEEEEeeccCCC------CHH---HHHhcccCCEEEEE
Confidence 999996666522 223 34679999999994
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.8e-05 Score=87.08 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=80.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------------------cceeccccccCCC-CC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------------------IGIYHDWCEAFST-YP 413 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------------------~~~~~~~~~~~~~-~p 413 (506)
.+|||+|||+|..+..|++... ...|+++|.++++++.|.+... ...+...+.++.. .+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4799999999999999987531 2489999999999998854311 0112222233222 22
Q ss_pred ---CceeEEEEccc---------cc-----cc--------cCcCCH-------------HHHHHHHhhhccCCcEEEEEe
Q 010592 414 ---RTYDLIHAHGL---------FS-----LY--------KDKCNI-------------EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 414 ---~s~Dlv~~~~~---------~~-----~~--------~~~~~~-------------~~~l~e~~RvLrPgG~~ii~d 455 (506)
..||+|.|+-= ++ +. .+.+.+ ..++.+..++|||||++++.-
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 26999998421 00 00 012222 468899999999999999976
Q ss_pred ChhhHHHHH-HHHhcCCceEE
Q 010592 456 EVDEIIKVK-KIVGGMRWDTK 475 (506)
Q Consensus 456 ~~~~~~~~~-~~~~~~~w~~~ 475 (506)
....-+.+. +++.+.+|+..
T Consensus 279 G~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 279 GGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred CccHHHHHHHHHHHHCCCCee
Confidence 666677788 68888887754
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.5e-05 Score=65.53 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=61.9
Q ss_pred EEeecCcccHHH--HHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------cceeccccc-cCCCCC-CceeEEEEccc
Q 010592 356 IMDMNAGFGGFA--AAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCE-AFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 356 vLD~gcG~G~~~--~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------~~~~~~~~~-~~~~~p-~s~Dlv~~~~~ 424 (506)
++|+|||+|... ..+...+ ..++++|.++.|+..+..+.. .....+... .++..+ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999854 3333322 467779999988988555431 111111111 133333 389999 6444
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
..+.. .+...+.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~---~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLL---PPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcC---CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 44222 2788999999999999999997654
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=71.94 Aligned_cols=106 Identities=21% Similarity=0.322 Sum_probs=76.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcCCCe--EEEEecccc---CCCCCCCeeE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIK---MPYASRAFDM 169 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~~~~~--~~~~~d~~~---lp~~~~sfDl 169 (506)
+..-+||||.||.|.+....... .+...|+++..+. ...+..+++|+.. .|...|+.+ +.--+...++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~-~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE-KGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH-HHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 44568999999999877666543 3677889886653 4445666777763 677777643 2222446799
Q ss_pred EEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 170 AHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 170 V~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.+..++.+.++. ...+.-+.+.|.|||++|.+..|.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 99998887766544 467899999999999999997443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00018 Score=66.38 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=60.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+++|+|+|||||.++...+-. .|+++|+++..+ +...+++.+.+..+.+.+.|+.+.. +.||.|+.+.-+=-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 4568999999999876665544 599999988544 5555666665667888888887654 46889998765532
Q ss_pred cCCCh-HHHHHHHHHhc
Q 010592 179 WGAND-GRYMIEVDRVL 194 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvL 194 (506)
+.... ..++..+.++-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 22222 46666666653
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=69.05 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=71.3
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec--cccccCC-CCCCceeE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH--DWCEAFS-TYPRTYDL 418 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~--~~~~~~~-~~p~s~Dl 418 (506)
...+.++||++|.++|.-+..|+..---...++.+|..+++.++|++- |+-. .+. ++-+.++ ....+||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 344678899999999998888876311134799999999999988763 4322 222 3444455 35699999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
|+... .+.+-+..|.+.-+.|||||.+++
T Consensus 136 iFIDa------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFIDA------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEeC------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 99811 122446899999999999999998
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.1e-05 Score=77.18 Aligned_cols=114 Identities=8% Similarity=0.139 Sum_probs=76.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--cceeccccccCCCC----CCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--IGIYHDWCEAFSTY----PRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--~~~~~~~~~~~~~~----p~s~Dlv~~~~~~ 425 (506)
..+|||++||+|.++..++.++ ..|+++|.++.+++.|.+.. . +..+...+.++..+ ...||+|.++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence 3579999999999999999765 57999999999999887642 1 11222233333221 1469999984
Q ss_pred ccccCcCCH-HHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeec
Q 010592 426 SLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 426 ~~~~~~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~ 479 (506)
+++..+ ..++..+ .-++|++.++++.... ..+.++.+ .+|++..+..
T Consensus 308 ---PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 308 ---PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIERVQL 356 (374)
T ss_pred ---CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEEEE
Confidence 234433 3444555 4589999999987654 44556655 5788765433
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=71.69 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=57.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++........ ....+.+...|+..++++
T Consensus 15 ~~i~~~i~~~~~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVL--EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCC--CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh
Confidence 33445666666433 3458999999999999999987 58889998765543322221 123466777788777765
Q ss_pred CCCee---EEEEcCcc
Q 010592 164 SRAFD---MAHCSRCL 176 (506)
Q Consensus 164 ~~sfD---lV~~~~~l 176 (506)
+|| +|+++..+
T Consensus 91 --~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --DFPKQLKVVSNLPY 104 (253)
T ss_pred --HcCCcceEEEcCCh
Confidence 566 78876543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.1e-05 Score=71.61 Aligned_cols=136 Identities=17% Similarity=0.128 Sum_probs=87.4
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccceecccc----ccCCCC-----CC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDWC----EAFSTY-----PR 414 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~~~~~~~----~~~~~~-----p~ 414 (506)
+...+.++||++||++|.-+.+|++.-.....|+.+|.++.+.++|.+ .|+-..++... +-++.+ ++
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 334457799999999999999998631123589999999999988855 25422111111 112221 25
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEEee
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~~~ 478 (506)
+||+|+.+.- +..-...+..+.+.|||||.+++-+.+- ..+-.+.+...=++++.+..
T Consensus 121 ~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp 194 (205)
T PF01596_consen 121 QFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP 194 (205)
T ss_dssp SEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC
T ss_pred ceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE
Confidence 8999998331 2344568888889999999999954321 12333445677788888876
Q ss_pred cCCCCCCCeEEEEEEec
Q 010592 479 HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 479 ~~~~~~~~~~~l~~~k~ 495 (506)
..| .+++++|+
T Consensus 195 igd------Gl~l~~K~ 205 (205)
T PF01596_consen 195 IGD------GLTLARKR 205 (205)
T ss_dssp STT------EEEEEEE-
T ss_pred eCC------eeEEEEEC
Confidence 664 36777774
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=70.86 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=94.7
Q ss_pred HHHHHHHHhhCCC--CCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc----C----------
Q 010592 86 DKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER----G---------- 147 (506)
Q Consensus 86 ~~~~~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~----~---------- 147 (506)
...++.|.+.++. ......+||--|||.|+++-.++.+| +.+.++|-.|+-... +.... +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceec
Confidence 5566777777652 22334689999999999999999986 667777766642221 22111 0
Q ss_pred ---------------C-------------CeEEEEeccccCCCCC---CCeeEEEEcCcccccCCChHHHHHHHHHhcCC
Q 010592 148 ---------------V-------------PAVIGVLGTIKMPYAS---RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP 196 (506)
Q Consensus 148 ---------------~-------------~~~~~~~d~~~lp~~~---~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkP 196 (506)
+ ......+|...+..++ ++||+|++.+. +.-..+.-.+|..+.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHHHHHHHHHHHHHhcc
Confidence 0 0111222333332233 69999998753 34334446899999999999
Q ss_pred CeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeecccc
Q 010592 197 GGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEK 245 (506)
Q Consensus 197 GG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~ 245 (506)
||++|=.+|-..+..... ......++-.++.+..+.+.++|+.+.+.
T Consensus 195 gG~WIN~GPLlyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 195 GGYWINFGPLLYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCEEEecCCccccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 998887776553322110 00111233446678888888899887643
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.2e-05 Score=79.58 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=79.9
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-------
Q 010592 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI------- 399 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~------- 399 (506)
+.++...|..+ ..+..+...+..+. .++|+|||+|+...++..-. .-++++++.++..+.++.+.-..
T Consensus 88 ~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~ 162 (364)
T KOG1269|consen 88 GNSNEMFWIRH-EGIVALRESCFPGS--KVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKC 162 (364)
T ss_pred hhHHHHHHHhh-cchHHHhhcCcccc--cccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 44444556533 33444444444443 78999999999988887632 35788888886666655443211
Q ss_pred ceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 400 GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 400 ~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
...-.|+...|+-+++||.+.+..+.. |-.+...+++|+.|||+|||+++.
T Consensus 163 ~~~~~~~~~~~fedn~fd~v~~ld~~~---~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 163 NFVVADFGKMPFEDNTFDGVRFLEVVC---HAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ceehhhhhcCCCCccccCcEEEEeecc---cCCcHHHHHHHHhcccCCCceEEe
Confidence 112224444566669999999966666 455778899999999999999999
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.2e-05 Score=79.58 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=74.9
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+..++|+|||.|....+++.. ++++++.++..+........... .....+...+....||+++.||.+.+..+..|
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 347999999999888888754 57777776654443333222211 11233466778889999999999999999878
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 179 WGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.++...+++|++|+++|||+++..
T Consensus 191 -~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 191 -APDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -CCcHHHHHHHHhcccCCCceEEeH
Confidence 567899999999999999999985
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.6e-05 Score=74.36 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
....+|+|.|.|+.+..+..+ ++.++++....+.+++...+ ..+..+-+|..+- .| +-|+|++.++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P--~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TP--KGDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceeccccccc-CC--CcCeEEEEeecccCC
Confidence 468999999999999999876 57888885443333333332 2244444454332 33 345999999999998
Q ss_pred CCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 181 AND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 181 ~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
++. ..+|+++...|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 766 8999999999999999999653
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.4e-05 Score=76.55 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=68.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHH---------------HHcC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFA---------------LERG 147 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a---------------~~~~ 147 (506)
...+..+.+.+.....++.++||||||.-.+-..-+.. .++..|+++....+-..... ...|
T Consensus 40 ~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg 119 (256)
T PF01234_consen 40 LFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEG 119 (256)
T ss_dssp HHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccC
Confidence 33444555555433445679999999997554333322 58888887654422111111 0011
Q ss_pred C-------------C-eEEEEeccccC-CCCC-----CCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEc
Q 010592 148 V-------------P-AVIGVLGTIKM-PYAS-----RAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 ~-------------~-~~~~~~d~~~l-p~~~-----~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~ 204 (506)
. . -.+...|..+. |+.. ..||+|++.+|++....+. ..+++++.++|||||.|++.+
T Consensus 120 ~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 120 KREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0 0 12333455433 2322 3599999999998777766 478999999999999999965
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=76.46 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=74.2
Q ss_pred CChhhhhhhhhhhHHHHHH-HHHHhhhcCCCC----CceEEeecCcccHHHHHHHhCC---CeEEEEeecCCCcccHHHH
Q 010592 322 VSAESYQEDSNKWKKHVNA-YKKINRLLDSGR----YRNIMDMNAGFGGFAAAIQSSK---LWVMNVVPTLADKNTLGVI 393 (506)
Q Consensus 322 ~~~~~f~~d~~~W~~~v~~-y~~~~~~~~~~~----~r~vLD~gcG~G~~~~~l~~~~---~~~~~v~~~d~~~~~l~~~ 393 (506)
.+-|.|+.|.-+.+..-.. +..+...+.... ...|||+|||+|-+...-++.+ .....|.+++.+++.....
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l 230 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL 230 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH
Confidence 3678999998665543332 233333444432 3469999999999865443321 1246899999886655432
Q ss_pred ----HhcCccceeccccccCCCC--CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEE
Q 010592 394 ----YERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 394 ----~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
.+.|.-..++-...++... |..+|+|.+=-+ -......-++..|.-.+|.|||||.+|
T Consensus 231 ~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 231 QKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2334323233334555544 489999998211 111233456678999999999998665
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00018 Score=73.56 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+++||.||+|.|..++.+++. .++++|+++..+.-+...+... ....+.+...|... +....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4568999999999999988774 4788888775443332222111 12345666666643 3334578999998
Q ss_pred cCcccccCCC------hHHHHH-HHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGAN------DGRYMI-EVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~------~~~~l~-e~~rvLkPGG~li~~~ 204 (506)
-. ..++... ...+++ .+.+.|+|||.+++..
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 53 2222111 146787 8999999999998754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=6e-05 Score=75.23 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=78.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccH----HHHHHHhC-C--CeEEEEeecCCCcccHHHHHhcC
Q 010592 325 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG----FAAAIQSS-K--LWVMNVVPTLADKNTLGVIYERG 397 (506)
Q Consensus 325 ~~f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~----~~~~l~~~-~--~~~~~v~~~d~~~~~l~~~~~rg 397 (506)
..|-.|...|+...... .. .++.-+|...||.||. +|..|.+. + .+...|+++|+++++|+.|.+--
T Consensus 94 T~FFRd~~~f~~L~~~~---~~---~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 94 TAFFREAHHFPILAEHA---RR---RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CCccCCcHHHHHHHHHH---Hh---cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 34555666666443321 11 1122479999999998 34334442 1 12468999999999999886521
Q ss_pred --------cc----------------c--------------eeccccccCCCC--CCceeEEEEccccccccCcCCHHHH
Q 010592 398 --------LI----------------G--------------IYHDWCEAFSTY--PRTYDLIHAHGLFSLYKDKCNIEDI 437 (506)
Q Consensus 398 --------~~----------------~--------------~~~~~~~~~~~~--p~s~Dlv~~~~~~~~~~~~~~~~~~ 437 (506)
+. + ..|+..+ . .+ ++.||+|.|-++|.+.. ......+
T Consensus 168 Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~-~-~~~~~~~fD~I~cRNvliyF~-~~~~~~v 244 (287)
T PRK10611 168 YRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA-K-QWAVPGPFDAIFCRNVMIYFD-KTTQERI 244 (287)
T ss_pred CCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC-C-CCccCCCcceeeHhhHHhcCC-HHHHHHH
Confidence 00 0 0111111 0 12 28899999999998553 3456789
Q ss_pred HHHHhhhccCCcEEEEEeCh
Q 010592 438 LLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 438 l~e~~RvLrPgG~~ii~d~~ 457 (506)
+..+.+.|+|||+|++-...
T Consensus 245 l~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 245 LRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHHHHhCCCcEEEEeCcc
Confidence 99999999999999996543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=73.86 Aligned_cols=87 Identities=21% Similarity=0.246 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~ 162 (506)
...++.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++.....+++... ...+.+...|+...++
T Consensus 22 ~~i~~~Iv~~~~~~--~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIK--PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCC--CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 34556666666443 3458999999999999999876 58999998866654443333221 2346777778766554
Q ss_pred CCCCeeEEEEcCcc
Q 010592 163 ASRAFDMAHCSRCL 176 (506)
Q Consensus 163 ~~~sfDlV~~~~~l 176 (506)
+ .||.|+++..+
T Consensus 100 ~--~~d~VvaNlPY 111 (294)
T PTZ00338 100 P--YFDVCVANVPY 111 (294)
T ss_pred c--ccCEEEecCCc
Confidence 3 68999987644
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00024 Score=67.19 Aligned_cols=122 Identities=14% Similarity=0.108 Sum_probs=74.8
Q ss_pred CCeEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh--C--CcEEEecCccchHHHHHHHHH
Q 010592 69 GNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFAL 144 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~--~--~v~~vdis~~di~~~~~~~a~ 144 (506)
+-.|.+.-....|..+...--.++.+.+ .++.+|||+-||.|.|+..+++ + .|.++|++|..+ +.+.+.++
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v----~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~ 146 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLV----KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIR 146 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcC----CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHH
Confidence 3444455555566666544435677665 3355999999999999999988 3 489999998544 45555555
Q ss_pred HcCCC--eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEE
Q 010592 145 ERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 145 ~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li 201 (506)
.+++. +.....|...++. .+.||.|+++. +.....+|..+.+++++||.+-
T Consensus 147 lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 147 LNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 55554 4556777766654 78999999864 2233568999999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=67.31 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=84.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCCCCCCceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
.++|+|+|||||.|+-..+-.| .-.|+++|..+++++++++.- +.+.+...+.++..+..-||.|..+-=|-....
T Consensus 46 g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 5679999999999876655544 257999999999999887642 345566667888889999999999888876665
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEe
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
+.|.+.++.-+ ++ .=.++=.......+-+++.+..++..+...
T Consensus 124 haDr~Fl~~Al-e~---s~vVYsiH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 124 HADRPFLLKAL-EI---SDVVYSIHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cCCHHHHHHHH-Hh---hheEEEeeccccHHHHHHHHHhcCCeEEEE
Confidence 66765443322 11 122333344557788888899988776644
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00015 Score=68.98 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=67.9
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceec--------------------------
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYH-------------------------- 403 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~-------------------------- 403 (506)
-+|||||..|.+.+.+++. .-...|+++|+.+-.++.|.+.-- .....
T Consensus 61 ~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~ 139 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTT 139 (288)
T ss_pred eeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccc
Confidence 4999999999999999875 223569999999888888876421 00000
Q ss_pred -----ccc-------c--cCCCCC-CceeEEEEccccc--cccCcC-CHHHHHHHHhhhccCCcEEEEE
Q 010592 404 -----DWC-------E--AFSTYP-RTYDLIHAHGLFS--LYKDKC-NIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 404 -----~~~-------~--~~~~~p-~s~Dlv~~~~~~~--~~~~~~-~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.|. + +|-... .-||+|.|-++=- |+.+.. .+-..+..+.|.|.|||+||+.
T Consensus 140 ~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 140 DFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 0 011122 6799999944432 444444 4788999999999999999993
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00019 Score=67.74 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=74.4
Q ss_pred CEEEEECCCCChhHHHHhh-CCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC---CCCeeEEEEcCccccc
Q 010592 104 RTALDTGCGVASWGAYLWS-RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA---SRAFDMAHCSRCLIPW 179 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~-~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~---~~sfDlV~~~~~l~~~ 179 (506)
.++|||||=+......-.. -.|+.+|+.+.. -.+...|....|.| +++||+|.|+.++..
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf- 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSLVLNF- 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEEEEee-
Confidence 5899999975543322211 147888886531 12345577666653 679999999999855
Q ss_pred CCCh---HHHHHHHHHhcCCCeE-----EEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeecc
Q 010592 180 GAND---GRYMIEVDRVLRPGGY-----WVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKS 243 (506)
Q Consensus 180 ~~~~---~~~l~e~~rvLkPGG~-----li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~ 243 (506)
.+++ ...+..+.+.|+|+|. |+++.|...... . -+...+.+..+.+.+++..+.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~N--S--------Ry~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTN--S--------RYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhc--c--------cccCHHHHHHHHHhCCcEEEE
Confidence 5555 5899999999999999 999887653210 0 011234566666777665543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.1e-05 Score=74.73 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=69.8
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcCC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~ 433 (506)
..++|+|||.|-. +...+ ..-+++.|.+...+..+...|-......-+-.+|.-+.+||.+.+..+++|+..++.
T Consensus 47 sv~~d~gCGngky---~~~~p--~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 47 SVGLDVGCGNGKY---LGVNP--LCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred ceeeecccCCccc---CcCCC--cceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence 3599999999954 33322 245788899977777887766422222212334444599999999999998887877
Q ss_pred HHHHHHHHhhhccCCcEEEE
Q 010592 434 IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii 453 (506)
=..+|.|+-|+|||||...|
T Consensus 122 R~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALV 141 (293)
T ss_pred HHHHHHHHHHHhcCCCceEE
Confidence 78999999999999998666
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=77.32 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=60.8
Q ss_pred CCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlV~~ 172 (506)
...|||||||+|-+....++. .|.+++-++..... ..+.....+ ..+.+...+++.+..+. .+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~-l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT-LQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH-HHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH-HHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 458999999999887555432 58889887743322 112223333 35788888888887654 8999998
Q ss_pred cCcccccCCCh--HHHHHHHHHhcCCCeEEE
Q 010592 173 SRCLIPWGAND--GRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 173 ~~~l~~~~~~~--~~~l~e~~rvLkPGG~li 201 (506)
-..- .+..+. ...|....|.|||||.++
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 5432 222222 577899999999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=9e-05 Score=73.82 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=50.7
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-Cc--eeEEEEc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RT--YDLIHAH 422 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s--~Dlv~~~ 422 (506)
......+|||+|||+|.++..|++.+ ..|+++|.+++|++.+.++.....++..+.++..++ .. +|.|+++
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 33445689999999999999999875 389999999999999987631122333345555444 22 5888874
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00056 Score=60.16 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=63.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCCh-hHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-CC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVAS-WGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA-SR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~-~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~-~~ 165 (506)
+.|.+.++. ..+.+|||||||.|. ++..|++.+ |+++|+++ ..++.+++.+. ...+.|...-.+. -+
T Consensus 6 ~~l~~~~~~--~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~--~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEK--GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGL--NAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhccc--ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCC--eEEECcCCCCCHHHHh
Confidence 345555533 334689999999995 888898875 77777765 35666666654 4445566554433 45
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+|+|++... +++....+.++.+.+ |.-+++.
T Consensus 77 ~a~liysirp----p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 77 NAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred cCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEE
Confidence 7999999763 233355566666654 4445554
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0003 Score=66.62 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=61.2
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCCCceeEEEEcccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYPRTYDLIHAHGLF 425 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p~s~Dlv~~~~~~ 425 (506)
.+|||+|||+|.++..++.++ ...|+++|.++..++.+.+. |+ ..+...+.++ +.....||+|.++-=|
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 479999999999998655544 25899999999998877653 22 1122222322 1123579999994443
Q ss_pred ccccCcCC-HHHHHHHHh--hhccCCcEEEEEeCh
Q 010592 426 SLYKDKCN-IEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 426 ~~~~~~~~-~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
. .. .+.++.-+. .+|+|+|.+++....
T Consensus 132 ~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 R-----KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C-----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2 22 233444443 358999999997654
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=69.62 Aligned_cols=141 Identities=15% Similarity=0.244 Sum_probs=84.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--------------------cCc-------------
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--------------------RGL------------- 398 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--------------------rg~------------- 398 (506)
+.+++||+|||+-.+- .|... -+.-+++..|.++..++.... .|-
T Consensus 56 ~g~~llDiGsGPtiy~-~lsa~-~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ-LLSAC-EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG-GTTGG-GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh-hhhHH-HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3568999999996552 33222 356788888888777652211 010
Q ss_pred -cc-eec-cccc--cCCC---CCCceeEEEEccccccc-cCcCCHHHHHHHHhhhccCCcEEEEEeChh-----------
Q 010592 399 -IG-IYH-DWCE--AFST---YPRTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD----------- 458 (506)
Q Consensus 399 -~~-~~~-~~~~--~~~~---~p~s~Dlv~~~~~~~~~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------- 458 (506)
+. ++. |..+ .+.. .|..||+|.+...+... .++.....+|..|-+.|||||.||+..-++
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 10 110 0111 1221 34569999997777732 334445689999999999999999953321
Q ss_pred -----hHHHHHHHHhcCCceEEEeecCC--CCCCCeEEEEEEe
Q 010592 459 -----EIIKVKKIVGGMRWDTKMVDHED--GPLVPEKILVAVK 494 (506)
Q Consensus 459 -----~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~l~~~k 494 (506)
..+.|++.++..+.++...+... -..+...+++|||
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 56788899999999988766421 1223577888887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00025 Score=69.81 Aligned_cols=74 Identities=5% Similarity=0.015 Sum_probs=51.4
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC-Ccee---EEE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYD---LIH 420 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p-~s~D---lv~ 420 (506)
..+...+..+|||+|||+|.++..|++.+ ..|+++|.+++|++.+.++-- ...+.-.+.++..++ ..|| +|.
T Consensus 23 ~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~~~~vv 99 (253)
T TIGR00755 23 EAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPKQLKVV 99 (253)
T ss_pred HhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCCcceEE
Confidence 33444456789999999999999999876 359999999999998876521 122222234555445 4677 777
Q ss_pred Ec
Q 010592 421 AH 422 (506)
Q Consensus 421 ~~ 422 (506)
++
T Consensus 100 sN 101 (253)
T TIGR00755 100 SN 101 (253)
T ss_pred Ec
Confidence 63
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00028 Score=68.97 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEec
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLG 156 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d 156 (506)
..-.++..+.+.. ..++|||||+++|+-+.+++.. .++++|.++.....+. +.-.+.|. .+.+..++
T Consensus 66 ~~g~lL~~l~~~~-----~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar-~~~~~ag~~~~I~~~~G~ 139 (247)
T PLN02589 66 DEGQFLNMLLKLI-----NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL-PVIQKAGVAHKIDFREGP 139 (247)
T ss_pred HHHHHHHHHHHHh-----CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEecc
Confidence 3345555555554 2358999999999988888753 4889999774433222 22233343 35555555
Q ss_pred ccc-CCC------CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 157 TIK-MPY------ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 157 ~~~-lp~------~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+.. |+- ..++||+|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 432 221 136899999743 2222367888889999999998874
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0009 Score=65.84 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=85.5
Q ss_pred CCCceEEeecCcccHHHHHHH-hCCCeEEEEeecCCCcccHH----HHHhcCccceeccccc-cCC-----CCCCceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQ-SSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCE-AFS-----TYPRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~-~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~~~~~~~~-~~~-----~~p~s~Dlv 419 (506)
+.--+||||.||.|....... +.+.-...|.-.|.++..++ .+.+||+-.++..-+. +|. ...-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 445589999999999754443 33322457888899988876 6778888554333222 121 122457899
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC--hhhHHHHHHHHhc----CCceEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVGG----MRWDTK 475 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~--~~~~~~~~~~~~~----~~w~~~ 475 (506)
..+++|....+..-+...|.-+.++|.|||+||.+-. -+.++.|...+.+ ..|.++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR 275 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR 275 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE
Confidence 9999999887665677899999999999999999753 2345555555544 346644
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0001 Score=68.41 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=81.1
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeE
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAV 151 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~ 151 (506)
|.+.|.+|--..++|...+.---+.......++||+|+|.|..+..++.. .|.+.++| ..++..-+..+.++.
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS-----~tMr~rL~kk~ynVl 158 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELS-----WTMRDRLKKKNYNVL 158 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhh-----HHHHHHHhhcCCcee
Confidence 66777777666666643332211222233468999999999999888765 35555544 455555544443322
Q ss_pred EEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCC-CeEEEEE--cCCCCccc
Q 010592 152 IGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP-GGYWVLS--GPPINWKT 211 (506)
Q Consensus 152 ~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkP-GG~li~~--~p~~~~~~ 211 (506)
......-.+-+||+|.|...+. -..++..+|+.+..+|+| .|.++++ -|-..+..
T Consensus 159 ----~~~ew~~t~~k~dli~clNlLD-Rc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE 216 (288)
T KOG3987|consen 159 ----TEIEWLQTDVKLDLILCLNLLD-RCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVE 216 (288)
T ss_pred ----eehhhhhcCceeehHHHHHHHH-hhcChHHHHHHHHHHhccCCCcEEEEEEecccceee
Confidence 2222222244799999988773 366789999999999999 8888874 25444433
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00016 Score=71.47 Aligned_cols=72 Identities=7% Similarity=0.079 Sum_probs=53.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC-CceeEEEEcccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p-~s~Dlv~~~~~~ 425 (506)
....+|||+|||+|.++..|++.+ ..|+++|.++.|++.+.++-- ...+...++++..++ ..||.|.++--+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPY 101 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCCc
Confidence 345789999999999999999874 479999999999999887631 223333455665555 568999985444
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00049 Score=62.85 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=69.7
Q ss_pred CCEEEEECCCCChhHHHHhhC-C----cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR-N----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-~----v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
..-+||||||+|..+..|++. + +.++|++|... ++..+-|+.++..+..++.|...- +..++.|+++.+.-+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 447999999999999999876 2 67889988533 444556666666655665554321 2238999999876554
Q ss_pred ccCCCh--------------------HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 178 PWGAND--------------------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 178 ~~~~~~--------------------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+-.+.+ .+++..+..+|.|.|.|++..-.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 322211 14666777888999999998643
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00062 Score=63.65 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC----Cc--EEEecCccchHHHHHHHHHHc---------------CCCeEEEEeccccC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NV--IAMSFAPRDSHEAQVQFALER---------------GVPAVIGVLGTIKM 160 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v--~~vdis~~di~~~~~~~a~~~---------------~~~~~~~~~d~~~l 160 (506)
++.+.||+|.|+|+++..++.. +. .+++. .+..++.+.++ ..+..+.++|....
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh-----~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEH-----IPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhh-----hHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 4558999999999988777643 33 44444 33444433321 12345667777776
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
--+...||.|+|.... ....+++...|+|||.+++-.
T Consensus 157 ~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 6677899999997432 345578888899999999854
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00052 Score=71.51 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=66.1
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+|||++||+|.++..++.. .|+++|+++..+.... +.+..+++. ..+...|+..+....+.||+|++..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 48999999999999998754 3899999885553333 333444444 3356666654321145799999853
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 179 WGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+ ..+..++..+.+.+++||+++++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 234678888888899999999985
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00054 Score=71.71 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=79.1
Q ss_pred EEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
++|-+|||.-.+...+-+- .++.+|+|+..+.......+. ......+...|...+.|++.+||+|+--..+.++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999998888776 478889988777665555553 234567788899999999999999999888877655
Q ss_pred ChH---------HHHHHHHHhcCCCeEEEEEc
Q 010592 182 NDG---------RYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 182 ~~~---------~~l~e~~rvLkPGG~li~~~ 204 (506)
+.. ..+.++.|+|+|||.++..+
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 443 45789999999999987754
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0024 Score=62.08 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=84.4
Q ss_pred hhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-------Ccccee
Q 010592 330 DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-------GLIGIY 402 (506)
Q Consensus 330 d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-------g~~~~~ 402 (506)
+++-|-..|-+-.+-..... ...+||+|||+|-.+..|+.. ..-..|+++|.|+..+..|.+. |-+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~---~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSK---HTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcc---cceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 45667666654332222222 226999999999998888763 2246799999999999888774 224444
Q ss_pred cc-----ccccCCCCCCceeEEEEccc--cc-----------cccCcCCH----------HHHHHHHhhhccCCcEEEEE
Q 010592 403 HD-----WCEAFSTYPRTYDLIHAHGL--FS-----------LYKDKCNI----------EDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 403 ~~-----~~~~~~~~p~s~Dlv~~~~~--~~-----------~~~~~~~~----------~~~l~e~~RvLrPgG~~ii~ 454 (506)
|. |....+...+.+|++.|+-= ++ .+.++..+ ..++.=.-|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 33 22222223399999998531 11 00011100 13566678999999999995
Q ss_pred eC-----hhhH-HHHHHHHhcCCceEEEe
Q 010592 455 DE-----VDEI-IKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 455 d~-----~~~~-~~~~~~~~~~~w~~~~~ 477 (506)
-. ...+ -.|+..++.--|.+.+.
T Consensus 285 ~~~~~~~~~lv~~~m~s~~~d~~~~~~v~ 313 (328)
T KOG2904|consen 285 LVERKEHSYLVRIWMISLKDDSNGKAAVV 313 (328)
T ss_pred ecccccCcHHHHHHHHhchhhccchhhee
Confidence 33 2223 33344455555555543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00099 Score=62.64 Aligned_cols=100 Identities=9% Similarity=-0.048 Sum_probs=62.2
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc-CC-C-CC-CCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK-MP-Y-AS-RAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~-lp-~-~~-~sfDlV~~~ 173 (506)
+.+|||++||+|.++..++.++ ++++|.++..+... .+.+...+.. +.+...|... +. + .. ..||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~-~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTL-KENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHH-HHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 4589999999999999999873 78888877544322 2333333432 4566666632 22 1 12 247888876
Q ss_pred CcccccCCChHHHHHHHH--HhcCCCeEEEEEcC
Q 010592 174 RCLIPWGANDGRYMIEVD--RVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~--rvLkPGG~li~~~p 205 (506)
.-+.. .....++..+. .+|+++|.+++..+
T Consensus 129 PPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 53311 11244454443 47899999988754
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00037 Score=64.81 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=58.9
Q ss_pred HHHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhCC-----cEEEecCccchHHHHHHHHHHcCCCeEEEEecc-----
Q 010592 89 IDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT----- 157 (506)
Q Consensus 89 ~~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~~-----v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~----- 157 (506)
+.++.+..+ ...+.+.+|||+||++|.|+..+.++. +.++|+.+.... ........|.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhH
Confidence 345555555 334456799999999999999999874 788888764110 1111112221
Q ss_pred -ccC----CCCCCCeeEEEEcCcccccCC----Ch-------HHHHHHHHHhcCCCeEEEEEc
Q 010592 158 -IKM----PYASRAFDMAHCSRCLIPWGA----ND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 -~~l----p~~~~sfDlV~~~~~l~~~~~----~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+ +-..+.||+|+|-.+. .... +. ...+.-+...|+|||.|++..
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 111 1123689999996532 1111 11 134555667899999988864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=69.38 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCe-EEEEeccccCC-CCCCCeeEEE--
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKMP-YASRAFDMAH-- 171 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~-~~~~~d~~~lp-~~~~sfDlV~-- 171 (506)
.++.+|||++||.|.=+.+|++. .+++.|+++.-+ +...+...+-|+.. .+...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 45569999999999877777764 378899987544 23334444456654 44455655443 2245799999
Q ss_pred --EcCcccccCCCh------------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 172 --CSRCLIPWGAND------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 --~~~~l~~~~~~~------------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+..- .+..++ ..+|..+.++|||||+|+.++-..
T Consensus 191 aPCSG~G-~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEG-TVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCc-ccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 55322 111222 367889999999999999987544
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00076 Score=66.58 Aligned_cols=127 Identities=16% Similarity=0.255 Sum_probs=80.7
Q ss_pred hhhhhhhhHHHHHHHHH-HhhhcCCCCCceEEeecCcccH----HHHHHHhCC----CeEEEEeecCCCcccHHHHHhcC
Q 010592 327 YQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGG----FAAAIQSSK----LWVMNVVPTLADKNTLGVIYERG 397 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~-~~~~~~~~~~r~vLD~gcG~G~----~~~~l~~~~----~~~~~v~~~d~~~~~l~~~~~rg 397 (506)
|--+.+.|.....+-.- +..... ++.-+|.-+||+||. +|-.|.+.. .+..+|.++|++...|+.|.. |
T Consensus 71 FFR~~~~f~~l~~~v~p~l~~~~~-~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~-G 148 (268)
T COG1352 71 FFRDPEHFEELRDEVLPELVKRKK-GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA-G 148 (268)
T ss_pred hccCcHHHHHHHHHHHHHHHhhcc-CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc-C
Confidence 55555666544333211 222111 135579999999997 444444433 246899999999999987753 2
Q ss_pred ccc-------------------------------------eeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHH
Q 010592 398 LIG-------------------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLE 440 (506)
Q Consensus 398 ~~~-------------------------------------~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e 440 (506)
..+ ..|++-.+-+ +++-||+|+|-+|+-... ...-..++..
T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd-~~~q~~il~~ 226 (268)
T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFD-EETQERILRR 226 (268)
T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeC-HHHHHHHHHH
Confidence 211 0111111111 447799999999988554 4445689999
Q ss_pred HhhhccCCcEEEEEeCh
Q 010592 441 MDRILRPEGAIIIRDEV 457 (506)
Q Consensus 441 ~~RvLrPgG~~ii~d~~ 457 (506)
++..|+|||+|+|-...
T Consensus 227 f~~~L~~gG~LflG~sE 243 (268)
T COG1352 227 FADSLKPGGLLFLGHSE 243 (268)
T ss_pred HHHHhCCCCEEEEccCc
Confidence 99999999999996554
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00029 Score=65.30 Aligned_cols=101 Identities=21% Similarity=0.328 Sum_probs=62.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----C------ccceeccccccCC--CCC-Ccee
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----G------LIGIYHDWCEAFS--TYP-RTYD 417 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g------~~~~~~~~~~~~~--~~p-~s~D 417 (506)
....+||++|||+|-.+..++... ....|+..|.++ .++..... + +.....+|.+..+ ..+ +.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 345689999999997766666641 236799999885 66643321 1 1223446776441 123 7899
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+|.++.++- .....+.++.=+.++|+|+|.+++...
T Consensus 122 ~IlasDv~Y---~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLY---DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccc---hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999988886 345667888999999999999888544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=63.29 Aligned_cols=119 Identities=16% Similarity=0.256 Sum_probs=81.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhc----C---ccceecccccc--------------
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYER----G---LIGIYHDWCEA-------------- 408 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~r----g---~~~~~~~~~~~-------------- 408 (506)
--+||==|||.|+++-.++..| ..+.+.+.|.-|+= .+... + +.+.+|.++..
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4479999999999999999987 57888899877753 33332 1 11222222221
Q ss_pred -------------------CCC-CC-----CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE--------Ee
Q 010592 409 -------------------FST-YP-----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII--------RD 455 (506)
Q Consensus 409 -------------------~~~-~p-----~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii--------~d 455 (506)
|-. |+ ++||.|.+...+... .++-+.|..|.++|||||+.|= .+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA---~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA---ENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech---HHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 111 22 489988876555422 2678899999999999994442 23
Q ss_pred C-------hh-hHHHHHHHHhcCCceEEEe
Q 010592 456 E-------VD-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 456 ~-------~~-~~~~~~~~~~~~~w~~~~~ 477 (506)
. ++ ..++|+.++++++|++...
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 2 22 6799999999999997643
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00072 Score=62.97 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=68.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C-----------cEEEecCccchHHHHHHHHHHcCCC--eEEEE
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N-----------VIAMSFAPRDSHEAQVQFALERGVP--AVIGV 154 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~-----------v~~vdis~~di~~~~~~~a~~~~~~--~~~~~ 154 (506)
..+..+.... ++..|||--||+|.+....+.. . +.+.|+++..+..+..+ +...+.. +.+.+
T Consensus 18 ~~ll~la~~~--~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 18 AALLNLAGWR--PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE
T ss_pred HHHHHHhCCC--CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEe
Confidence 3445555333 3458999999999988665432 3 45999988777554443 3444443 67777
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGAND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
.|+..+++.++++|.|+++.-+-.-.... ..+++++.++|++..++++..
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 88999998888999999976431111111 267889999999955555553
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00019 Score=67.05 Aligned_cols=93 Identities=17% Similarity=0.091 Sum_probs=60.5
Q ss_pred CceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCc--cc-----eecccc--------ccCCCCC-Cc
Q 010592 353 YRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGL--IG-----IYHDWC--------EAFSTYP-RT 415 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~--~~-----~~~~~~--------~~~~~~p-~s 415 (506)
.-+.||+|.|+|.+.+.+.. -+....++++++.-++.++.+.+.-. +. ..-+.| ..+-.-+ .-
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~ 162 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP 162 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence 35699999999998776652 22233567999998888886655421 10 000000 0111122 89
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
||.||+. .....+.+++--.|+|||.++|-
T Consensus 163 YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 163 YDAIHVG---------AAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cceEEEc---------cCccccHHHHHHhhccCCeEEEe
Confidence 9999993 33445778888999999999993
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.003 Score=64.61 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=65.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccc------eecccccc----CCCCCCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIG------IYHDWCEA----FSTYPRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~------~~~~~~~~----~~~~p~s~Dlv~ 420 (506)
..++||-||+|.|+.+..+.+.. .+.+|+.+|++++++++|++.- ... .+.-..++ +...++.||+|.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 46789999999999999887743 2367999999999999998752 110 00001111 112347899999
Q ss_pred Ecccccccc-CcC-C--HHHHHH-HHhhhccCCcEEEEE
Q 010592 421 AHGLFSLYK-DKC-N--IEDILL-EMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~-~~~-~--~~~~l~-e~~RvLrPgG~~ii~ 454 (506)
++. +.... ..+ . -...+. .+.+.|+|||.+++.
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 863 22100 001 0 134666 789999999999874
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=61.34 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=90.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCC-----CCCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST-----YPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~-----~p~s~Dlv~~~~~~~ 426 (506)
.+.+||+|+-||||.--|.++|. -.|.++|...+.|.--..... +-.+. -..+-. +..-.|++.|.-.|-
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E--~tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLE--RTNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEe--cCChhhCCHHHcccCCCeEEEEeehh
Confidence 67899999999999999999874 689999998776654433321 01110 011111 224678999966665
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEE-------------------EeC---hhhHHHHHHHHhcCCceEEEeecC--CC
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIII-------------------RDE---VDEIIKVKKIVGGMRWDTKMVDHE--DG 482 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii-------------------~d~---~~~~~~~~~~~~~~~w~~~~~~~~--~~ 482 (506)
.+..+|-.+..+|+|+|-++. +|+ ...+.++.+.++..+|.+.-...- .|
T Consensus 156 ------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G 229 (245)
T COG1189 156 ------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKG 229 (245)
T ss_pred ------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccC
Confidence 566799999999999998887 233 237788999999999997743322 22
Q ss_pred -CCCCeEEEEEEec
Q 010592 483 -PLVPEKILVAVKQ 495 (506)
Q Consensus 483 -~~~~~~~l~~~k~ 495 (506)
..+.|+++..+|+
T Consensus 230 ~~GNiE~l~~~~k~ 243 (245)
T COG1189 230 GKGNIEFLLLLKKS 243 (245)
T ss_pred CCCcEeeeeeeecc
Confidence 2235777766664
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0012 Score=64.50 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=83.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc----cccCCC------CC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW----CEAFST------YP 413 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~----~~~~~~------~p 413 (506)
+...+.++||++|+++|.-+.+|+..-.....|+.+|..+++..+|.+- |+...+... .+-++. ++
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 3444577899999999998888875311235799999998888876542 442211111 111222 23
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe---------Ch-----hhH--------HHHHHHHhcCC
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD---------EV-----DEI--------IKVKKIVGGMR 471 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d---------~~-----~~~--------~~~~~~~~~~~ 471 (506)
++||+|+.+.- +..-...+....+.|||||.+++-+ +. ... +-.+.+...-+
T Consensus 155 ~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~ 228 (247)
T PLN02589 155 GTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPR 228 (247)
T ss_pred CcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 69999998322 2233567777789999999988722 10 111 11223466778
Q ss_pred ceEEEeecCCCCCCCeEEEEEEec
Q 010592 472 WDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 472 w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+++.+....|| +++++|.
T Consensus 229 ~~~~llPigDG------l~l~~k~ 246 (247)
T PLN02589 229 IEICMLPVGDG------ITLCRRI 246 (247)
T ss_pred EEEEEEEeCCc------cEEEEEe
Confidence 88887766654 5666653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=68.63 Aligned_cols=113 Identities=15% Similarity=0.058 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC-
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM- 160 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l- 160 (506)
.+.+++.+.+.+... +.+|||+|||+|.++..|++. .++++|+++.++..+. +.+...++ ++.+...|...+
T Consensus 183 ~~~l~~~v~~~~~~~---~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 183 NIKMLEWACEVTQGS---KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHHHhhcC---CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHH
Confidence 356666666666321 126999999999999998875 5999999987765444 44444555 356666676432
Q ss_pred C-------C---C-----CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 P-------Y---A-----SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p-------~---~-----~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ + . ...||+|+....- ..-...+++.+ ++|++.++++..|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR---~G~~~~~l~~l---~~~~~ivYvsC~p~ 314 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPPR---AGLDPDTCKLV---QAYERILYISCNPE 314 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCCC---CCCcHHHHHHH---HcCCcEEEEEcCHH
Confidence 1 1 0 1137998875421 11113444544 34899999997665
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=65.06 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=70.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c----cceeccccccCCCC-CCc
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEAFSTY-PRT 415 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~----~~~~~~~~~~~~~~-p~s 415 (506)
...-...++||=+|.|-|+.++.+.+.+ .+|+-+|+.+++++.+++-- + ...+ . .+..- .++
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~-~---~~~~~~~~~ 139 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHA-K---QLLDLDIKK 139 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEe-e---hhhhccCCc
Confidence 3445567899999999999999999976 38999999999999887721 1 0011 0 11112 378
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
||+|.+++.|+ +.....+.|.|+|||.++..-.
T Consensus 140 fDVIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 140 YDLIICLQEPD--------IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CCEEEEcCCCC--------hHHHHHHHHhcCCCcEEEECCC
Confidence 99999976544 4577889999999999999543
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00048 Score=69.87 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=69.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh---------C--CcEEEecCccchHHHHHHHHHHc--CCCeEE
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---------R--NVIAMSFAPRDSHEAQVQFALER--GVPAVI 152 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---------~--~v~~vdis~~di~~~~~~~a~~~--~~~~~~ 152 (506)
....+.+.+++.. ..+.+|||.+||+|.|...+.+ . .+.|+|+++....-+..+..... .....+
T Consensus 32 ~~i~~l~~~~~~~--~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNP--KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhc--cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 4455667777733 3345899999999999877765 1 47788887655544444433321 111235
Q ss_pred EEeccccCCC-C-CCCeeEEEEcCccccc--CC-----C------------h-HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 153 GVLGTIKMPY-A-SRAFDMAHCSRCLIPW--GA-----N------------D-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 153 ~~~d~~~lp~-~-~~sfDlV~~~~~l~~~--~~-----~------------~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...|....+. . ...||+|+++..+... .. + . ..++..+.+.|++||++.+..|.
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 5556543332 2 5789999997544322 00 0 0 26889999999999999888764
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0036 Score=62.37 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=70.4
Q ss_pred HHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc---------CCCeEEEEe
Q 010592 90 DQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER---------GVPAVIGVL 155 (506)
Q Consensus 90 ~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~---------~~~~~~~~~ 155 (506)
.+++..++ ...+..++||-||-|.|..++.+++. .++.+||.+.. ++.+++. ...+.+...
T Consensus 63 hEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~V-----i~~ar~~l~~~~~~~~dpRv~i~i~ 137 (282)
T COG0421 63 HEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAV-----IELARKYLPEPSGGADDPRVEIIID 137 (282)
T ss_pred HHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHH-----HHHHHHhccCcccccCCCceEEEec
Confidence 34444443 22333469999999999999999987 58888887643 3444432 133455555
Q ss_pred ccccC-CCCCCCeeEEEEcCcccccCC----ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIKM-PYASRAFDMAHCSRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~l-p~~~~sfDlV~~~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|..+. .-...+||+|++-.. -+..+ ....+++.+.+.|+++|.++...
T Consensus 138 Dg~~~v~~~~~~fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 138 DGVEFLRDCEEKFDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cHHHHHHhCCCcCCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 55332 222348999998432 22111 01689999999999999999873
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=64.73 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=79.6
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc----ceeccccc-cCC-CCCCce
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYHDWCE-AFS-TYPRTY 416 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~----~~~~~~~~-~~~-~~p~s~ 416 (506)
.+.-.+..+||+.|.|.|.++.+|+..-.....|...|..++..+.|.+. |+. ....|.|+ .|+ ..++.|
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 45555667899999999999999985311225788999999999888764 442 23445663 342 234889
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhc-cCCcEEEEEe-ChhhHHHHHHHHhcCCceE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRIL-RPEGAIIIRD-EVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvL-rPgG~~ii~d-~~~~~~~~~~~~~~~~w~~ 474 (506)
|.|+. +-.++-.+|..+.++| ||||.+.+-- .++.+.++-.-+++.+|.-
T Consensus 115 DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 115 DAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp EEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred cEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 99998 5666667999999999 9999998854 4444444555577778863
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=64.93 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=80.9
Q ss_pred CCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc--Cccceecc-ccccCC--CCC-CceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER--GLIGIYHD-WCEAFS--TYP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r--g~~~~~~~-~~~~~~--~~p-~s~Dlv~~~~~ 424 (506)
.-++|||+|||+|...-+..+. + ....++.+|.|+.|++++..= ........ |-..+- ..+ ...|||.++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 4568999999999866555441 1 246799999999999976542 21111111 111111 012 34499999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEe
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~ 477 (506)
|+-+.. .....++..+.+-+.+ .|||-++- ..+.++++.+...++.+...
T Consensus 112 L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 112 LNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred hhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECC
Confidence 997776 5566788888777766 88886653 27788888888888877644
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0024 Score=60.63 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=78.2
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCc----ccHHHHHhc-CccceeccccccCCC-CC---CceeEEE
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADK----NTLGVIYER-GLIGIYHDWCEAFST-YP---RTYDLIH 420 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~----~~l~~~~~r-g~~~~~~~~~~~~~~-~p---~s~Dlv~ 420 (506)
..+..+||-+|+.+|+...++.+--....-|.+++.|+ +.+.+|..| .+++++.| ...|. |. ..+|+|+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D--Ar~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED--ARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES---TTSGGGGTTTS--EEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc--CCChHHhhcccccccEEE
Confidence 34456899999999999999987422224688999998 567789998 45667644 22222 22 7999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEE------eC----hhhHHHHHHHHhcCCceEE-EeecC
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR------DE----VDEIIKVKKIVGGMRWDTK-MVDHE 480 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~------d~----~~~~~~~~~~~~~~~w~~~-~~~~~ 480 (506)
++ ..++.+.+-++..+..-||+||.++|. |. ..+...-.+.+++.++++. .++.+
T Consensus 149 ~D-----VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le 214 (229)
T PF01269_consen 149 QD-----VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE 214 (229)
T ss_dssp EE------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T
T ss_pred ec-----CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC
Confidence 82 123445567888888999999999984 22 2233333344566677754 44444
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=68.09 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC-
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM- 160 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l- 160 (506)
.+.+++.+.+.+... ..+|||++||+|.++..|++. .++++|+++.++..+. +.+...++ ++.+...|+...
T Consensus 192 ~e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 192 NEKMLEWALDATKGS---KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHH
Confidence 355666666665321 236999999999999988875 5999999987765444 44444555 466777776431
Q ss_pred C-CC--------------CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 P-YA--------------SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p-~~--------------~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +. ...||+|+...-. ..-...+++.+. +|++.++++..|.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G~~~~~l~~l~---~~~~ivyvSC~p~ 323 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AGLDDETLKLVQ---AYERILYISCNPE 323 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCC---CCCcHHHHHHHH---ccCCEEEEEeCHH
Confidence 1 10 1258999985432 111134444444 4789999987654
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=64.61 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=64.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEE--Eecc-
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIG--VLGT- 157 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~--~~d~- 157 (506)
...++++...++. -.+.+|||+|||.|.-.-.+.+. .++++|.|+.++.-+. .+... ....... ....
T Consensus 19 ~~vl~El~~r~p~--f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~-~l~~~-~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 19 YRVLSELRKRLPD--FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK-RLLRA-GPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHHhCcC--CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH-HHHhc-ccccccchhhhhhh
Confidence 3444566665532 24558999999999655444432 4778888776553222 22221 1111110 0111
Q ss_pred -ccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 158 -IKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 158 -~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
...++. ..|+|+++++|..+.+.. ..+++.+.+.+.+ +|++..|..
T Consensus 95 ~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 95 RDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred cccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 122332 339999999998876522 4666666666655 888887765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0036 Score=63.41 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.++.++|||||++|.|+..|.+++ |+++|..+.+- .......+.+...+.....-+.+.+|+|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEeccCcccCCCCCCCCEEEEecc---
Confidence 456799999999999999999996 78888644211 112234466666665443222678999999643
Q ss_pred cCCChHHHHHHHHHhcCCC--eEEEEEc
Q 010592 179 WGANDGRYMIEVDRVLRPG--GYWVLSG 204 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPG--G~li~~~ 204 (506)
..|...++-|.++|..| ..+|+..
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 44678888899999877 4666653
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0019 Score=61.16 Aligned_cols=126 Identities=11% Similarity=0.157 Sum_probs=80.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEccccccccCcC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~~~~~~~ 432 (506)
-++|||||=....+.. ..+ ..+|++||+.++ +-++. .....--.+|.-+ +.||+|.++.|++......
T Consensus 53 lrlLEVGals~~N~~s--~~~--~fdvt~IDLns~------~~~I~-qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG--WFDVTRIDLNSQ------HPGIL-QQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCccc--ccC--ceeeEEeecCCC------CCCce-eeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 4799999975443222 222 367999999852 11211 1101111244444 8999999999999766333
Q ss_pred CHHHHHHHHhhhccCCcE-----EEEEeChh--------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 433 NIEDILLEMDRILRPEGA-----IIIRDEVD--------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~-----~ii~d~~~--------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.=-.-|..+++.|||+|. |+|.-+.+ ..+.++.++.+++++....... . +-.+...+|
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~--~--Kl~y~l~r~ 192 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKS--K--KLAYWLFRK 192 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEec--C--eEEEEEEee
Confidence 334689999999999999 77754433 4578899999999996543222 1 444555555
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0014 Score=61.73 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~ 157 (506)
..+..-+.+|.+...+- .++.+|+|+|+..|+|+..+++. .|+++|+.|.+.. ..+.+.+.|+
T Consensus 27 SRAa~KL~el~~k~~i~-~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~ 94 (205)
T COG0293 27 SRAAYKLLELNEKFKLF-KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDI 94 (205)
T ss_pred chHHHHHHHHHHhcCee-cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeec
Confidence 33444445555554322 34569999999999999998876 2899999876442 2256666665
Q ss_pred ccCC--------CCCCCeeEEEEcCcc---cccCCCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010592 158 IKMP--------YASRAFDMAHCSRCL---IPWGAND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~lp--------~~~~sfDlV~~~~~l---~~~~~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
..-+ +....+|+|+|-..- -++..|. ..++.-+..+|+|||.|++..
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 4322 334457999973321 1111111 255667788999999999864
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=66.75 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=88.5
Q ss_pred hhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecc
Q 010592 329 EDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHD 404 (506)
Q Consensus 329 ~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~ 404 (506)
.++-.|-.+-.....+-..+. .++|||+=|=||+|+.+.+..|. -.|+.+|.|...|+.|.+. |+...-|.
T Consensus 197 ~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~ 271 (393)
T COG1092 197 LKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHR 271 (393)
T ss_pred ccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCcccee
Confidence 344444333333333333343 46799999999999999988762 4899999999999988875 33222222
Q ss_pred c-cc-cCCC---CC---CceeEEEEcc-ccccccCcC-----CHHHHHHHHhhhccCCcEEEEEeChh------hHHHHH
Q 010592 405 W-CE-AFST---YP---RTYDLIHAHG-LFSLYKDKC-----NIEDILLEMDRILRPEGAIIIRDEVD------EIIKVK 464 (506)
Q Consensus 405 ~-~~-~~~~---~p---~s~Dlv~~~~-~~~~~~~~~-----~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~ 464 (506)
| ++ .|.. +. .+||+|..+- .|...+... +...++....++|+|||.+++..... ..+.|.
T Consensus 272 ~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 272 FIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred eehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence 2 22 2222 22 4999999831 222111100 22368899999999999999965332 445555
Q ss_pred HHHhcCCceEEEee
Q 010592 465 KIVGGMRWDTKMVD 478 (506)
Q Consensus 465 ~~~~~~~w~~~~~~ 478 (506)
.-+..++-...++.
T Consensus 352 ~a~~~~~~~~~~~~ 365 (393)
T COG1092 352 RAAAAAGRRAQEIE 365 (393)
T ss_pred HHHHhcCCcEEEee
Confidence 55556655545543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0031 Score=64.02 Aligned_cols=116 Identities=9% Similarity=0.061 Sum_probs=71.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcCCCeEE--EEe
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVL 155 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~di~~~~~~~a~~~~~~~~~--~~~ 155 (506)
+.....|+..++ ++..++|+|||.|.=+..|++. .+.++|||...+..+..+........+.+ ..+
T Consensus 64 ~~~~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~g 139 (319)
T TIGR03439 64 KKHSSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEe
Confidence 344456666662 3448999999999766555432 37889998877766665555233222333 444
Q ss_pred cccc----CCC--CCCCeeEEEEcC-cccccCCCh-HHHHHHHHH-hcCCCeEEEEEcC
Q 010592 156 GTIK----MPY--ASRAFDMAHCSR-CLIPWGAND-GRYMIEVDR-VLRPGGYWVLSGP 205 (506)
Q Consensus 156 d~~~----lp~--~~~sfDlV~~~~-~l~~~~~~~-~~~l~e~~r-vLkPGG~li~~~p 205 (506)
|..+ ++- ......+|+... ++-.+.++. ..+|+++.+ .|+|||.|++...
T Consensus 140 dy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 140 TYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred cHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 4322 321 123467777643 333433322 588999999 9999999999653
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00056 Score=68.78 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=51.2
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~ 423 (506)
....+|||+|||+|.++..|++.+ ..|+++|.+++|++.+.++ ++...+.-.++++...+ ..||.|.++.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaNl 109 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVANV 109 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEecC
Confidence 345689999999999999998865 4799999999999988775 22222333345554445 6789988843
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0036 Score=66.14 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP 161 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp 161 (506)
.+.+++...+.+...+ +.+|||+=||.|.|+..|+++ .|+++++++..+.. +.+.|+.+++. +.+..++++...
T Consensus 278 ~ekl~~~a~~~~~~~~--~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~-A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 278 AEKLYETALEWLELAG--GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEA-AQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHhhcC--CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHH-HHHHHHHcCCCcEEEEeCCHHHHh
Confidence 3666677777775433 348999999999999999976 69999999977744 44555555555 666667766554
Q ss_pred C---CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 Y---ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~---~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. ....||.|+...-- ..-...+++.+.+ ++|-..+++|.+|.
T Consensus 355 ~~~~~~~~~d~VvvDPPR---~G~~~~~lk~l~~-~~p~~IvYVSCNP~ 399 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPR---AGADREVLKQLAK-LKPKRIVYVSCNPA 399 (432)
T ss_pred hhccccCCCCEEEECCCC---CCCCHHHHHHHHh-cCCCcEEEEeCCHH
Confidence 2 23578999875422 1111345555544 68888999998776
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0016 Score=66.05 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=70.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----Cccceeccc-cc---c-CCC---CCC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDW-CE---A-FST---YPR 414 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~-~~---~-~~~---~p~ 414 (506)
+..+...+|||||||+|..+..|..+- ....++++|.++.+++.|.+- ++...+.-. +. . +.. ...
T Consensus 110 ~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 110 IPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCC
Confidence 344456789999999998888876542 134799999999999987753 121111110 11 1 111 136
Q ss_pred ceeEEEEccccccccCcCC--HHHHHHH----------------HhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010592 415 TYDLIHAHGLFSLYKDKCN--IEDILLE----------------MDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~--~~~~l~e----------------~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
.||+|.|+-=|........ -..-... ....+-+||.+-+...+ +.+-..++++.+|=+.+
T Consensus 189 ~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~m--i~eS~~~~~~~gwftsm 266 (321)
T PRK11727 189 RFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRM--IEESKAFAKQVLWFTSL 266 (321)
T ss_pred ceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHh--hHHHHHHHhhCcEEEEE
Confidence 8999999755542211100 0011111 22445688887775544 33335556666665444
Q ss_pred e
Q 010592 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 267 v 267 (321)
T PRK11727 267 V 267 (321)
T ss_pred e
Confidence 3
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0019 Score=67.10 Aligned_cols=110 Identities=11% Similarity=0.143 Sum_probs=70.0
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C--------------
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y-------------- 412 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~-------------- 412 (506)
+|||++||+|.|+.+|++.. ..|+++|.++.|++.|.+. |+ ..+...+.++.. +
T Consensus 209 ~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred eEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 59999999999999888753 4799999999999988764 22 122222222211 1
Q ss_pred -CCceeEEEEccccccccCcCCH-HHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeec
Q 010592 413 -PRTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 413 -p~s~Dlv~~~~~~~~~~~~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~ 479 (506)
...||+|..+ ++|..+ +.++..+ ++|++.++|+.... ....++.+.+ +|++..+..
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l~~l---~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v~~ 343 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETLKLV---QAYERILYISCNPETLCENLETLSQ--THKVERFAL 343 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHHHHH---HccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEEEE
Confidence 1248999981 123232 3344443 45899999986654 3455666653 788765433
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=68.08 Aligned_cols=110 Identities=11% Similarity=0.098 Sum_probs=69.6
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCC----------C---C-----
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFST----------Y---P----- 413 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~----------~---p----- 413 (506)
.|||++||+|.|+..|++.. ..|+++|.+++|++.|.+..- +..+...+.++.. + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 49999999999999888763 379999999999998887521 1112222222211 1 0
Q ss_pred -CceeEEEEccccccccCcCCH-HHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010592 414 -RTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 414 -~s~Dlv~~~~~~~~~~~~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
..||+|..+ +++..+ +.++.- +++|++.++|+-... ....+..+.++ |++..+.
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~ 333 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVERFA 333 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEE
Confidence 127888871 123332 344444 455999999976554 55667766643 8866443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=8.3e-05 Score=65.95 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=48.9
Q ss_pred EEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCCCcc
Q 010592 153 GVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPINWK 210 (506)
Q Consensus 153 ~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~~ 210 (506)
.+......+|.++|.|+|++.++++|+.-+. ..++++++|+|||||+|-+++|...+.
T Consensus 34 vc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 34 VCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred hhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 3334467789999999999999999987655 689999999999999999999887653
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.004 Score=58.19 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=60.5
Q ss_pred EEEEECCCCChhHHHHhh----CCcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 105 TALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~----~~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+++|||+|.|.-+..|+= ..++.+|-...-. .-....+.+-+++ +......++. +....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 799999999965555542 2577888755322 1112234444665 5555555666 5557799999996532
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEE
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
....++.-+...|++||.+++.
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 2467888999999999998875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=60.59 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=63.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCC--C-CceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STY--P-RTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~--p-~s~Dlv~~ 421 (506)
..+|||++||+|.++..++.++. ..|+.+|.++.+++.+.+. ++...+..++.+. ..+ . ..||+|..
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 35799999999999999999874 3799999999888877653 2211122222332 112 1 24899998
Q ss_pred ccccccccCcCCHHHHHHHH--hhhccCCcEEEEEeCh
Q 010592 422 HGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d~~ 457 (506)
.-=|.. ...+.+|.-+ ..+|+++|.+++....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 655541 1233333333 4589999999986543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0093 Score=60.45 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=64.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEcccccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~~~~~ 429 (506)
+..++||+||++|+|+..|.++| +.|+++|.. .|-+...+-+.+. |.-...|... ++.+|+|.|+-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g-~l~~~L~~~~~V~--h~~~d~fr~~p~~~~vDwvVcDm------ 278 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNG-PMAQSLMDTGQVE--HLRADGFKFRPPRKNVDWLVCDM------ 278 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC---CEEEEEech-hcCHhhhCCCCEE--EEeccCcccCCCCCCCCEEEEec------
Confidence 45689999999999999999987 589999977 5666555554322 2222334444 47899999922
Q ss_pred CcCCHHHHHHHHhhhccCC--cEEEEE
Q 010592 430 DKCNIEDILLEMDRILRPE--GAIIIR 454 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPg--G~~ii~ 454 (506)
.+.+..++.=|.+.|..| ..+|++
T Consensus 279 -ve~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 279 -VEKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -ccCHHHHHHHHHHHHhcCcccEEEEE
Confidence 246778888888899777 466664
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.024 Score=52.08 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=78.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cC--ccceeccccccCCCCCCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RG--LIGIYHDWCEAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg--~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~ 426 (506)
...+|++|||+|-....|++.-....-.+++|+++..++.-.+ .+ +..+..|....+ -+++.|++.-+--+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh--ccCCccEEEECCCcC
Confidence 5569999999999999998753333557888999887775333 22 122222222222 238999887654443
Q ss_pred cccCcCC------------------HHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010592 427 LYKDKCN------------------IEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 427 ~~~~~~~------------------~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
-....+. +..+|..+.-+|-|.|.+++--... ...+|-+++++-+|.+.+..
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence 2222221 3356777888889999999843221 23456668899999877543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0031 Score=58.70 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=72.2
Q ss_pred cCCCCCceEEeecCcccHHH--HHHHhCCCe------EEEEeecCCCcccHHHHHhc----Cccceeccc---cccCCCC
Q 010592 348 LDSGRYRNIMDMNAGFGGFA--AAIQSSKLW------VMNVVPTLADKNTLGVIYER----GLIGIYHDW---CEAFSTY 412 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~--~~l~~~~~~------~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~---~~~~~~~ 412 (506)
..+.....|||-=||+|++. +++...+.. ...+.+.|.+++++..|.+. |+...++.. ...++..
T Consensus 24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~ 103 (179)
T PF01170_consen 24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP 103 (179)
T ss_dssp TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT
T ss_pred hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc
Confidence 34445568999999999986 233333321 22478999999999877664 332222222 2334434
Q ss_pred CCceeEEEEccccccccCcCCH--------HHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEe
Q 010592 413 PRTYDLIHAHGLFSLYKDKCNI--------EDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~~~~--------~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
++++|+|.++-=+- .+... ..++.++.|+|+|...+++.... .+.+.+....|+....
T Consensus 104 ~~~~d~IvtnPPyG---~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~----~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 104 DGSVDAIVTNPPYG---RRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR----ELEKALGLKGWRKRKL 169 (179)
T ss_dssp TSBSCEEEEE--ST---TSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC----CHHHHHTSTTSEEEEE
T ss_pred cCCCCEEEECcchh---hhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH----HHHHHhcchhhceEEE
Confidence 48999999954433 22221 25789999999995566666554 3455666668875543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0036 Score=68.28 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.0
Q ss_pred CCEEEEECCCCChhHHHHhh
Q 010592 103 VRTALDTGCGVASWGAYLWS 122 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~ 122 (506)
..+|||.|||+|.+...++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~ 51 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLK 51 (524)
T ss_pred ceEEEeCCCCccHHHHHHHH
Confidence 45899999999999887765
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0053 Score=60.51 Aligned_cols=90 Identities=10% Similarity=0.071 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHH---------cCCCeEEEEeccccCCCCCCCeeE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALE---------RGVPAVIGVLGTIKMPYASRAFDM 169 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~---------~~~~~~~~~~d~~~lp~~~~sfDl 169 (506)
+.+++||=||.|.|..++.+++. .|+.+||++..+ +.+++ ..+++.+.. ... .-..++||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv-----~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKIL-----DSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHH-----HHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCE
Confidence 45679999999999999999987 588888876443 33333 122333332 111 112368999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|++-.. ....+.+.+.|.|+|||.++.-.
T Consensus 143 IIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 143 IICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 998532 23678899999999999999854
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00032 Score=65.22 Aligned_cols=88 Identities=20% Similarity=0.392 Sum_probs=67.4
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
.++||+|+|.|.....|+.. .-.|.+.++|..|...-..++. ++. ..|.+ -+=.||+|.|-+++ +|
T Consensus 114 ~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl~~-~ew~~----t~~k~dli~clNlL----DR 181 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVLTE-IEWLQ----TDVKLDLILCLNLL----DR 181 (288)
T ss_pred eeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCceeee-hhhhh----cCceeehHHHHHHH----Hh
Confidence 57999999999998888652 2358888999899988887764 222 22332 12359999995555 58
Q ss_pred C-CHHHHHHHHhhhccC-CcEEEE
Q 010592 432 C-NIEDILLEMDRILRP-EGAIII 453 (506)
Q Consensus 432 ~-~~~~~l~e~~RvLrP-gG~~ii 453 (506)
| ++-.+|..|+-||+| .|.+|+
T Consensus 182 c~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred hcChHHHHHHHHHHhccCCCcEEE
Confidence 8 677899999999999 999988
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0026 Score=62.26 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.|.+.+.... +.+|||||+|.|.++..|+++ .|+++++++..+..-....+ ...+..+..+|+...+++
T Consensus 16 ~~v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 344677777775444 459999999999999999998 58999997743322211111 234567777888877776
Q ss_pred CC-CeeEEEEcCc
Q 010592 164 SR-AFDMAHCSRC 175 (506)
Q Consensus 164 ~~-sfDlV~~~~~ 175 (506)
+- .++.|+++.-
T Consensus 92 ~l~~~~~vVaNlP 104 (259)
T COG0030 92 SLAQPYKVVANLP 104 (259)
T ss_pred hhcCCCEEEEcCC
Confidence 53 6889999864
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.015 Score=55.77 Aligned_cols=149 Identities=19% Similarity=0.179 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEE-Eeccc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~~~~~-~~d~~ 158 (506)
+|+..+...+...- + ..+++.+||||+.||.|+..+.+++ |.++|+.-.-++ ...+....+... ..++.
T Consensus 62 RG~~KL~~ale~F~-l-~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~-----~kLR~d~rV~~~E~tN~r 134 (245)
T COG1189 62 RGGLKLEKALEEFE-L-DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH-----WKLRNDPRVIVLERTNVR 134 (245)
T ss_pred cHHHHHHHHHHhcC-c-CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC-----HhHhcCCcEEEEecCChh
Confidence 55566654444432 2 2456799999999999999999984 888888654332 223333333322 22333
Q ss_pred cCC---CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccc----hhcccCChHHhHHHHHHHH
Q 010592 159 KMP---YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTN----YKAWQRPKEELQEEQRKIE 231 (506)
Q Consensus 159 ~lp---~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~----~~~~~~~~~~~~~~~~~l~ 231 (506)
.+. +. +..|+|+|--+++. ...+|..+..+|+|+|.++.-.-|.--..+ .....+...........+.
T Consensus 135 ~l~~~~~~-~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 135 YLTPEDFT-EKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred hCCHHHcc-cCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence 332 22 36889999776644 367899999999999999886644311111 1112334444445566677
Q ss_pred HHHHhcceeecc
Q 010592 232 EIANLLCWEKKS 243 (506)
Q Consensus 232 ~l~~~~~w~~~~ 243 (506)
+++....|....
T Consensus 210 ~~~~~~g~~~~g 221 (245)
T COG1189 210 NFAKELGFQVKG 221 (245)
T ss_pred HHHhhcCcEEee
Confidence 777777776653
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.014 Score=55.70 Aligned_cols=142 Identities=14% Similarity=0.185 Sum_probs=89.1
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHH--HHhCCCeEEEEeecCCCcccH---HHHHhc-Cccc
Q 010592 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAA--IQSSKLWVMNVVPTLADKNTL---GVIYER-GLIG 400 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~--l~~~~~~~~~v~~~d~~~~~l---~~~~~r-g~~~ 400 (506)
..+..+.|.+++-.-..+...+... ..+++|||.|.|-=+.- +.... .+|+-+|....-. +.+... |+ .
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~---~~vtLles~~Kk~~FL~~~~~eL~L-~ 117 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPD---LKVTLLESLGKKIAFLREVKKELGL-E 117 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccC---CcEEEEccCchHHHHHHHHHHHhCC-C
Confidence 3445688988887766665544332 46799999999963333 33333 4588888664433 333333 54 2
Q ss_pred eeccccccCCCCC--Cc-eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE---EeChhhHHHHHHHHhcCCceE
Q 010592 401 IYHDWCEAFSTYP--RT-YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII---RDEVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 401 ~~~~~~~~~~~~p--~s-~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii---~d~~~~~~~~~~~~~~~~w~~ 474 (506)
+++-++.+.+.+. .. ||+|.| . ..+++...+.=....||+||.++. .-..++..+.+......++.+
T Consensus 118 nv~i~~~RaE~~~~~~~~~D~vts----R---Ava~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 118 NVEIVHGRAEEFGQEKKQYDVVTS----R---AVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQV 190 (215)
T ss_pred CeEEehhhHhhcccccccCcEEEe----e---hccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcE
Confidence 2333345555544 23 999998 2 233666666667789999998754 344456777888888888887
Q ss_pred EEeecC
Q 010592 475 KMVDHE 480 (506)
Q Consensus 475 ~~~~~~ 480 (506)
..+..-
T Consensus 191 ~~~~~~ 196 (215)
T COG0357 191 EKVFSL 196 (215)
T ss_pred EEEEEe
Confidence 755443
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.002 Score=60.28 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=67.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc-c
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-K 159 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~-~ 159 (506)
+..-+.+.+.|....-.+.++||+-||+|.++...+.+| ++.+|.++.-+. ...+....-+.. ......|.. .
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-IIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-HHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-HHHHHHHHhCCCcceeeeccCHHHH
Confidence 333344555553211245699999999999999998885 788888764332 222333333332 455555642 2
Q ss_pred CC---CCCCCeeEEEEcCcccccCCCh--HHHHHHHH--HhcCCCeEEEEEcC
Q 010592 160 MP---YASRAFDMAHCSRCLIPWGAND--GRYMIEVD--RVLRPGGYWVLSGP 205 (506)
Q Consensus 160 lp---~~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~--rvLkPGG~li~~~p 205 (506)
++ .....||+|+.-.-+ .... ..++..+. .+|+++|.+++..+
T Consensus 105 l~~~~~~~~~fDiIflDPPY---~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPY---AKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHCTS-EEEEEE--ST---TSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHhhcccCCCceEEEECCCc---ccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 21 246789999997643 3332 55677766 78999999999764
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.002 Score=63.13 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEeccccC-CCCCC-CeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIKM-PYASR-AFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~l-p~~~~-sfDlV~ 171 (506)
.+++||=||-|.|..++.+.+. .++++|+++..+.-+..-+... ...+..+...|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4569999999999999999876 4888999775443333222221 134577777776432 22233 899999
Q ss_pred EcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.-..- +.... ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 74321 21111 1589999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0042 Score=66.37 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=71.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIH 420 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~Dlv~ 420 (506)
......+||||+||+|+=+.+|++.-.-...|++.|.++..+....++ |+ ..+.-.+.+ +. .++..||.|.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEE
Confidence 334556899999999997777765311113799999998888766543 44 222111222 21 3457899999
Q ss_pred ----Ecc--cccccc----Cc--CCH-------HHHHHHHhhhccCCcEEEEEe-C---hhhHHHHHHHHhc
Q 010592 421 ----AHG--LFSLYK----DK--CNI-------EDILLEMDRILRPEGAIIIRD-E---VDEIIKVKKIVGG 469 (506)
Q Consensus 421 ----~~~--~~~~~~----~~--~~~-------~~~l~e~~RvLrPgG~~ii~d-~---~~~~~~~~~~~~~ 469 (506)
|++ +|..-. .+ .++ ..+|....+.|||||+|+-+. + .+-.+.|+.+++.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 432 222100 00 001 258899999999999998853 2 2333444555544
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0024 Score=63.51 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=63.7
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--C--c---cceeccccccCCCCCCc
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--G--L---IGIYHDWCEAFSTYPRT 415 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r--g--~---~~~~~~~~~~~~~~p~s 415 (506)
.++..-..-..+.|||+|||.|.+...-+..| ...|.++++| +|.+.|..- + + |.++-.--|++ .+|..
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-eLPEk 243 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-ELPEK 243 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-cCchh
Confidence 34443333346789999999999766555555 3579999998 899877642 1 1 11211112444 27899
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.|+|.+--.=..+-+ ..+...-.-..|.|+|.|...=
T Consensus 244 ~DviISEPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 244 VDVIISEPMGYMLVN-ERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ccEEEeccchhhhhh-HHHHHHHHHHHhhcCCCCcccC
Confidence 999998222111111 2233333345599999997654
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0037 Score=60.75 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=57.3
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~ 164 (506)
.++.|.+..++.+ +..|||||.|||.++..|.+. .|+++++++.++.+-........ .....+..+|....++|
T Consensus 46 v~~~I~~ka~~k~--tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKP--TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHhccCCCC--CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 4456666665544 449999999999999999987 59999999987755443332111 11245555666555544
Q ss_pred CCeeEEEEcCcc
Q 010592 165 RAFDMAHCSRCL 176 (506)
Q Consensus 165 ~sfDlV~~~~~l 176 (506)
.||.++++.-+
T Consensus 123 -~fd~cVsNlPy 133 (315)
T KOG0820|consen 123 -RFDGCVSNLPY 133 (315)
T ss_pred -ccceeeccCCc
Confidence 59999997543
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0062 Score=60.67 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=59.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCe--EEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.++.|||+|||+|.++...++. +|.+++-|. |. +-+.++...+.+.. ....+.+++..+| +..|+|++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MA-qyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MA-QYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HH-HHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4568999999999877776665 477777653 22 22222333333332 3333445666555 479999985433
Q ss_pred cccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.-+..+. -...-.+.+.|||.|.++=+.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 2222211 222334569999999987543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.003 Score=55.65 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh---CCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~ 162 (506)
...+..|-+.... -.+..++|+|||.|-+.....- ..+.++||.|..+ +-..+.+.+-.+.+.+.++++..+-+
T Consensus 34 asM~~~Ih~Tygd--iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~ 110 (185)
T KOG3420|consen 34 ASMLYTIHNTYGD--IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLEL 110 (185)
T ss_pred HHHHHHHHhhhcc--ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhc
Confidence 3333444444432 2355899999999977644332 2588999987433 34445566656677888888888877
Q ss_pred CCCCeeEEEEcCcc
Q 010592 163 ASRAFDMAHCSRCL 176 (506)
Q Consensus 163 ~~~sfDlV~~~~~l 176 (506)
..+.||.++.+.-+
T Consensus 111 ~~g~fDtaviNppF 124 (185)
T KOG3420|consen 111 KGGIFDTAVINPPF 124 (185)
T ss_pred cCCeEeeEEecCCC
Confidence 78999999987654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0016 Score=65.36 Aligned_cols=79 Identities=19% Similarity=0.048 Sum_probs=53.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCC----CC---ceeEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTY----PR---TYDLI 419 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~----p~---s~Dlv 419 (506)
+......+++|++||+|+.+.++++.......|+++|.++.|+..|.++-- ...+.....+|..+ +. +||.|
T Consensus 15 L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 15 LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGI 94 (296)
T ss_pred hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence 333444589999999999999999863223689999999999999987621 11122223344432 23 79988
Q ss_pred EEccccc
Q 010592 420 HAHGLFS 426 (506)
Q Consensus 420 ~~~~~~~ 426 (506)
.++...+
T Consensus 95 l~DLGvS 101 (296)
T PRK00050 95 LLDLGVS 101 (296)
T ss_pred EECCCcc
Confidence 8855444
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0088 Score=62.22 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=70.6
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccC----CCCCCCeeEEEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKM----PYASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~l----p~~~~sfDlV~~ 172 (506)
+++|||+=|=||.|+.+.+.. .++.||+|..-+..+..++.. +++ +..+.+.|+... .-...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 669999999999999998876 478888877655444443333 343 356787786432 223458999997
Q ss_pred cCcccc------c--CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 173 SRCLIP------W--GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~------~--~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
-..-.- | ..+-..++..+.++|+|||.+++++...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 321100 0 1111478899999999999999987544
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0047 Score=55.86 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=77.4
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccCCCCC-Cce
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFSTYP-RTY 416 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~~~~p-~s~ 416 (506)
++...|.+.+.-.||.+|.|||-|..++.++++.--++++++.+++....-.++-. .|..-+.-..+...+ .-|
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCee
Confidence 34456778888899999999999999999999888899999999888887766531 122211111122234 789
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.|.|.-=|....-+ .-..+|.++.--|++||.++--
T Consensus 119 D~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 119 DSVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred eeEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEEE
Confidence 999984333211111 1136889999999999998873
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0079 Score=59.95 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=70.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccc--cc-----------CCCCC
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC--EA-----------FSTYP 413 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~--~~-----------~~~~p 413 (506)
.+..+..++||=+|-|.|+.++.+.+.+- +-.++.+|+.++.++.+++.- +..+..+ .+ +...+
T Consensus 71 ~~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l--~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 71 LLAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYL--PEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhc--cCcccccCCCceEEEeccHHHHHHhCC
Confidence 34445558999999999999999998652 568888899999999998762 1111100 11 11244
Q ss_pred CceeEEEEccccccccCcCC--HHHHHHHHhhhccCCcEEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.+||+|.++..=. ..+-.. -...+....|.|+|+|.++..
T Consensus 148 ~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 6899999832211 111011 157899999999999999997
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.019 Score=54.80 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
.-.+++.+.+.+ .++++||||.=||+-+..++.. .++++|+.+...... .++.+..+.. +.+.+..+
T Consensus 61 ~g~fl~~li~~~-----~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLIRLL-----NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred HHHHHHHHHHHh-----CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecch
Confidence 344555555555 2348999999888766555543 489999977544333 3333333433 44444443
Q ss_pred c-cC-----CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 158 I-KM-----PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 158 ~-~l-----p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
. .| ..+.++||+++. -++.+.-...+.++.++||+||.+++.
T Consensus 135 ~esLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 1 11 135789999986 345444468899999999999999985
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.008 Score=61.22 Aligned_cols=115 Identities=14% Similarity=0.061 Sum_probs=81.8
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEE
Q 010592 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGV 154 (506)
Q Consensus 80 ~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~--~~~~~ 154 (506)
+|.++-..--..++++. ..+.+|||+=+|.|.|+..++..+ |.++|++|..+ +-..+.++-+++. +....
T Consensus 170 ~Fsprl~~ER~Rva~~v----~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~ 244 (341)
T COG2520 170 YFSPRLSTERARVAELV----KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPIL 244 (341)
T ss_pred EECCCchHHHHHHHhhh----cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEe
Confidence 44444433334566666 235599999999999999998873 88999998544 4444455545444 44677
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|....+...+.||-|++... .....++..+.+.+++||.+.+-.
T Consensus 245 gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 245 GDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEe
Confidence 788777665588999998652 234678899999999999998864
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.004 Score=59.20 Aligned_cols=118 Identities=10% Similarity=0.135 Sum_probs=60.3
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHH---H----HcCC
Q 010592 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA---L----ERGV 148 (506)
Q Consensus 80 ~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a---~----~~~~ 148 (506)
.+++-....+..+.+.+.+.+ ....+|||||.|......+-. ...|+++.+. .+..+.... . ..+.
T Consensus 22 ~YGEi~~~~~~~il~~~~l~~--~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~-~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNLTP--DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE-LHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT--T--T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH-HHHHHHHHHHHHHHHHHHCTB
T ss_pred ceeecCHHHHHHHHHHhCCCC--CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH-HHHHHHHHHHHHHHHHHHhhc
Confidence 344444555566667775543 459999999999765554432 3778888764 322222111 1 1122
Q ss_pred ---CeEEEEeccccCCCC---CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEE
Q 010592 149 ---PAVIGVLGTIKMPYA---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 149 ---~~~~~~~d~~~lp~~---~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
++.+..+|..+.++. -..-|+|+++... +.++....|.++..-||+|-+++-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 234444444322211 1347999998754 344446677888888999988764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0041 Score=64.89 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=62.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C--CCceeEEEEccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y--PRTYDLIHAHGLFS 426 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~--p~s~Dlv~~~~~~~ 426 (506)
.+|||++||+|.++..++.... +..|+++|.+++.++.+.+. ++. .....+.+... + ...||+|..+- |
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 4699999999999999875421 34799999999999877653 221 11112222211 1 45799999833 1
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
-....+|....+.++|||.++|+
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12245667756889999999995
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.018 Score=54.75 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=70.8
Q ss_pred HHHHHHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC----C-cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc
Q 010592 86 DKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (506)
Q Consensus 86 ~~~~~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~----~-v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~ 159 (506)
..+...|..-+. ..-.++.+||-+|.++|....++++- | |.++++|+... +..+..|.+|. ++.-...|+.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr- 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDAR- 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TT-
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCC-
Confidence 334344444432 22344569999999999877777653 4 78999999644 56678888773 4444555653
Q ss_pred CC----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 160 MP----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 160 lp----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.| .--+.+|+|++--. + .+....++.++...||+||.++++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa--Q-p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA--Q-PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S--S-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC--C-hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 22 11348999998532 2 2323678888999999999999974
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.021 Score=57.85 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=80.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhC------CCeEEEEeecCCCcccHHHHHhc----Cccce-e-ccccccCCCC---
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSS------KLWVMNVVPTLADKNTLGVIYER----GLIGI-Y-HDWCEAFSTY--- 412 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~------~~~~~~v~~~d~~~~~l~~~~~r----g~~~~-~-~~~~~~~~~~--- 412 (506)
+......+|+|-+||+|+|..+..+. .....++.++|..+.++.++.-+ |.... . -.....|...
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence 34455668999999999997776541 01237899999999888877543 32111 0 1112223221
Q ss_pred -CCceeEEEEccccccc--cC---------------cCCHH-HHHHHHhhhccCCcEEEEEeChh------hHHHHHHH-
Q 010592 413 -PRTYDLIHAHGLFSLY--KD---------------KCNIE-DILLEMDRILRPEGAIIIRDEVD------EIIKVKKI- 466 (506)
Q Consensus 413 -p~s~Dlv~~~~~~~~~--~~---------------~~~~~-~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~- 466 (506)
...||+|.++-=|... .+ ....+ ..+..+.+.|++||++++--+.. ....+++.
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL 201 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence 2589999997666643 10 00111 46778999999999876643322 34567765
Q ss_pred HhcCCceEEEeecC----CCCCCCeEEEEEEec
Q 010592 467 VGGMRWDTKMVDHE----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 467 ~~~~~w~~~~~~~~----~~~~~~~~~l~~~k~ 495 (506)
++...-+. ++... .+...+-.+|+.+|.
T Consensus 202 l~~~~i~a-VI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 202 LENGYIEA-VISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp HHHEEEEE-EEE--TTSSSSSSS-EEEEEEEES
T ss_pred HhhchhhE-EeecccceecccCcCceEEEEeec
Confidence 44433333 33222 233346677777774
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.012 Score=54.67 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=63.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+++|||+|+|+|-.+..-+.. .+.+.|+.|. ...+..-++..+++.+.+...|... .+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~-~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW-LEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChH-HHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 4679999999999766655554 4778888763 3333334455566666665444333 5678999999987632
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 179 WGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.+...+++. ..+.|+..|.-++.+.|
T Consensus 155 -~~~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 -HTEADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred -chHHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 222256666 66666666666665533
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.026 Score=58.38 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=68.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC-----C-cEEEecCccchHHHHHHHHHHcCCCe-EEEEeccccCC--CC-CCCeeE
Q 010592 100 NGTVRTALDTGCGVASWGAYLWSR-----N-VIAMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKMP--YA-SRAFDM 169 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~-----~-v~~vdis~~di~~~~~~~a~~~~~~~-~~~~~d~~~lp--~~-~~sfDl 169 (506)
+.++.+|||+.++.|.=+.+|++. . |+++|+++.-+ +...+....-|+.+ .....|...++ .+ .+.||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 345569999999999777777664 2 48999987433 33444555556654 55556665443 22 235999
Q ss_pred EEE----c--Cccc-----ccCCC----------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 170 AHC----S--RCLI-----PWGAN----------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 170 V~~----~--~~l~-----~~~~~----------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+. + .++. -|... ...+|..+.++|||||.|+.++-..
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 994 2 2210 01111 1268999999999999999987544
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0082 Score=56.62 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=71.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccc-c----cC-CCCC-CceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC-E----AF-STYP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~-~----~~-~~~p-~s~Dlv~~~~~~ 425 (506)
...|+|+||-+|+++..+++.......|+++|.. .|-.+. |+.....+.. + .+ ..++ ..+|+|.|+.+=
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~-p~~~~~---~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDIL-PMKPIP---GVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECc-ccccCC---CceEEeeeccCccHHHHHHHHcCCCCcceEEecCCC
Confidence 4579999999999988887653322347777765 333222 2211110000 0 00 1133 347999974433
Q ss_pred ccccCcC-------CHHHHHHHH-hhhccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeecC-CCCCCCeEEEE
Q 010592 426 SLYKDKC-------NIEDILLEM-DRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPEKILV 491 (506)
Q Consensus 426 ~~~~~~~-------~~~~~l~e~-~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~l~ 491 (506)
....++. .+..+..|| .++|+|||.+++.+- .+.+..++.+++.+.=. ... .-+.+.|.+++
T Consensus 122 ~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~----KP~aSR~~S~E~y~v 197 (205)
T COG0293 122 NTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIF----KPKASRKRSREIYLV 197 (205)
T ss_pred CcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEe----cCccccCCCceEEEE
Confidence 2211111 122344444 459999999999653 33555566555554322 221 11224688888
Q ss_pred EEe
Q 010592 492 AVK 494 (506)
Q Consensus 492 ~~k 494 (506)
|.+
T Consensus 198 ~~~ 200 (205)
T COG0293 198 AKG 200 (205)
T ss_pred Eec
Confidence 875
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.059 Score=50.15 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcC--CCeEEEEeccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI 158 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~ 158 (506)
-.+..-+.+.+++....-.+.++||+=+|+|.++...+.++ ++.+|.+.... ....++...-+ ....+...|+.
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~-~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAV-KILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCccceEEEeecHH
Confidence 33455566677774212345699999999999999999984 77788865322 12222233223 34555555654
Q ss_pred c-CCCCCC--CeeEEEEcCcccccCCChHHHHHH--HHHhcCCCeEEEEEcCCC
Q 010592 159 K-MPYASR--AFDMAHCSRCLIPWGANDGRYMIE--VDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 159 ~-lp~~~~--sfDlV~~~~~l~~~~~~~~~~l~e--~~rvLkPGG~li~~~p~~ 207 (506)
. |+-... .||+|+.-.-+..=.-+....+.. -..+|+|+|.+++.....
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2 222222 499999876542100111222222 457899999999975433
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.01 Score=60.17 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=73.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc--eeccc-cccCCCCC-CceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDW-CEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~--~~~~~-~~~~~~~p-~s~Dlv~~~~~ 424 (506)
..+|||==||||+|.-.. +..+.++++.|++..|+.-|... ++-. .+..| ...+| ++ .++|.|.+.-=
T Consensus 198 G~~vlDPFcGTGgiLiEa---gl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~~~~vdaIatDPP 273 (347)
T COG1041 198 GELVLDPFCGTGGILIEA---GLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LRDNSVDAIATDPP 273 (347)
T ss_pred CCEeecCcCCccHHHHhh---hhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CCCCccceEEecCC
Confidence 447999999999985443 33448999999999999876543 1111 11111 12333 45 56999998422
Q ss_pred cc--cccCcCC----HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 425 FS--LYKDKCN----IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 425 ~~--~~~~~~~----~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
.- ....... ...+|.++.++||+||++++.-+.....+ +..++|++.
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~----~~~~~f~v~ 326 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHE----LEELGFKVL 326 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh----HhhcCceEE
Confidence 21 1122222 35799999999999999999766433333 455667655
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.013 Score=58.43 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=63.7
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC---CeEEEEecccc-CC--CCCCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK-MP--YASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~-lp--~~~~sfDlV~~~ 173 (506)
+++|||+=|=||.|+.+.+..| |+.+|.|...+..+..+.+. +++ ...+...|+.. +. -..+.||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4699999999999999877664 78888877666555444443 333 35677777643 21 124689999984
Q ss_pred Cccc-----ccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 174 RCLI-----PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 174 ~~l~-----~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..-. ....+-..++..+.++|+|||.|++++..
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2211 11111246788899999999999887643
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.012 Score=58.83 Aligned_cols=100 Identities=21% Similarity=0.259 Sum_probs=63.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccCCC-C-----CCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAFST-Y-----PRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~~~-~-----p~s~Dlv~~ 421 (506)
.++|||+=|=||+|+.+.+..| ...|+.+|.|...|+.+.+. |+. ..+..++++.-. + .+.||+|.+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999877766 35799999999999988775 331 222233333211 1 269999998
Q ss_pred cc-ccccccCcC----CHHHHHHHHhhhccCCcEEEEEeC
Q 010592 422 HG-LFSLYKDKC----NIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 422 ~~-~~~~~~~~~----~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+- .|. ..+- +...++....++|+|||.|++.-.
T Consensus 202 DPPsF~--k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFA--KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEE--SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 31 222 1111 233578888999999999988543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.043 Score=48.89 Aligned_cols=97 Identities=15% Similarity=0.043 Sum_probs=56.2
Q ss_pred CCCCEEEEECCCCChhHHHHhh-----C---CcEEEecCccchHHHHHHHHHHcCC----CeEEEEeccccCCCCCCCee
Q 010592 101 GTVRTALDTGCGVASWGAYLWS-----R---NVIAMSFAPRDSHEAQVQFALERGV----PAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~-----~---~v~~vdis~~di~~~~~~~a~~~~~----~~~~~~~d~~~lp~~~~sfD 168 (506)
.+...|+|+|||.|+++..|+. . .|+++|.++... +...+.+.+.+. ...+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 3456899999999999999988 4 588888887544 333334433331 1222222222111 145567
Q ss_pred EEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 169 MAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 169 lV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++.. |...+. ..+|+.+.+ |+-.+++..|-
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCC
Confidence 77753 445555 456666555 66666655443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.027 Score=56.97 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=68.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
.....+|+|.|.|..+..+... ..-+..+-.|.+ ..++.|..-+ .++-|.-+.-|-..| .=|+|+.-.+++++.+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp-~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLP-FVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTDE 252 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHH-HHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCChH
Confidence 4678999999999999998873 322444444443 3333333323 444444444444444 23499999999966633
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+...+|+....-|+|||.++|-|.
T Consensus 253 -dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 253 -DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -HHHHHHHHHHHhCCCCCEEEEEec
Confidence 678899999999999999999654
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.017 Score=54.30 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=69.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccc-cCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMP 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~-~lp 161 (506)
..+.++.++.+. .++.+||.||-|-|.....+.++. ...++-.| ++-+.+...+-...-++....+--+ -++
T Consensus 88 tpiMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-~V~krmr~~gw~ek~nViil~g~WeDvl~ 163 (271)
T KOG1709|consen 88 TPIMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-DVLKRMRDWGWREKENVIILEGRWEDVLN 163 (271)
T ss_pred hHHHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH-HHHHHHHhcccccccceEEEecchHhhhc
Confidence 445566666663 345689999999999888887763 34455555 3333333322211112222222212 222
Q ss_pred -CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 162 -YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 162 -~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++++.||-|+--. +....++...+.+.+.|+|||+|+|-+-
T Consensus 164 ~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 5788999999743 3233455678889999999999998764
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.012 Score=55.59 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=54.7
Q ss_pred CceEEeecCcccHHHHHHHh--CCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~--~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dlv~~~~~ 424 (506)
..+|+||-||.|.|+..+++ ++ ..|+++|..|..++...+- ++-..+...+.+...+ ...||-|.+..
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~---~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKA---KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-S---SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred ceEEEEccCCccHHHHHHhhhcCc---cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 46899999999999999887 43 4699999988777644332 2322221112332222 58999888711
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
+ ......|.+..+.+|+||.+.
T Consensus 178 ----p--~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 ----P--ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----T--SSGGGGHHHHHHHEEEEEEEE
T ss_pred ----h--HHHHHHHHHHHHHhcCCcEEE
Confidence 1 122348888999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.061 Score=58.70 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=83.1
Q ss_pred CceEEeecCcccHHHHHHHhCC-------CeEEEEeecCCCcccHHHHHhcC-ccc-----ee--ccccccC---CCCCC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSK-------LWVMNVVPTLADKNTLGVIYERG-LIG-----IY--HDWCEAF---STYPR 414 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~-------~~~~~v~~~d~~~~~l~~~~~rg-~~~-----~~--~~~~~~~---~~~p~ 414 (506)
..+|||.+||+|.|..++.+.. ....++.+.|.++..+..+...- ..+ +. ...+..+ ....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4589999999999988776421 12478999999999888776541 011 11 0112111 11226
Q ss_pred ceeEEEEccccccccC--------------------------------cCC----------H-HHHHHH-HhhhccCCcE
Q 010592 415 TYDLIHAHGLFSLYKD--------------------------------KCN----------I-EDILLE-MDRILRPEGA 450 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~--------------------------------~~~----------~-~~~l~e-~~RvLrPgG~ 450 (506)
.||+|.++-=+.-... .+. . ..++.| ..+.|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 8999999654442210 011 1 113445 5899999999
Q ss_pred EEEEeChh-----hHHHHHHH-HhcCCceEEEeecC------CCCCCCeEEEEEEec
Q 010592 451 IIIRDEVD-----EIIKVKKI-VGGMRWDTKMVDHE------DGPLVPEKILVAVKQ 495 (506)
Q Consensus 451 ~ii~d~~~-----~~~~~~~~-~~~~~w~~~~~~~~------~~~~~~~~~l~~~k~ 495 (506)
+.+--+.. .-..+++. ++........ +-+ ++...+..+++.+|.
T Consensus 192 ~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~-~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 192 VSIISPASWLGDKTGENLREYIFNNRLINCIQ-YFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred EEEEEChHHhcCccHHHHHHHHHhCCeeEEEE-ECCccccCcCCCCcceEEEEEECC
Confidence 98854443 34567774 5555555332 222 233345667777764
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.12 Score=50.63 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=67.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~ 162 (506)
..|..++...++ .+|||-|.|+|+++.+++.. .+...|+-..-..++..++. +.++ .+.+...|....-|
T Consensus 95 a~I~~~L~i~PG--svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr-~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 95 AMILSMLEIRPG--SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR-EHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHhcCCCC--CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH-HhCCCcceEEEEeecccCCc
Confidence 456677755544 49999999999999888775 36777774422222222222 2333 35566667665544
Q ss_pred C--CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 163 A--SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 163 ~--~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +..+|.|+.-. +.|-.++-.++.+||.+|.-+++.
T Consensus 172 ~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 172 LIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred cccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEec
Confidence 3 67899998743 224456777788999887544443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.06 Score=54.75 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=60.7
Q ss_pred ceEEeecCcccHHHHHHH----hCCCeEEEEeecCCCcccHHHHHhcCc----c-ceeccccccC-------CC--CCCc
Q 010592 354 RNIMDMNAGFGGFAAAIQ----SSKLWVMNVVPTLADKNTLGVIYERGL----I-GIYHDWCEAF-------ST--YPRT 415 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~----~~~~~~~~v~~~d~~~~~l~~~~~rg~----~-~~~~~~~~~~-------~~--~p~s 415 (506)
..++|+|||.|.=...|. ..+ .....+|+|+|.++|+.+.++-. . -.++-.|.+| +. .+..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~-~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQK-KSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcC-CCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 369999999998554443 222 13579999999999998877532 1 1111233333 11 1222
Q ss_pred eeE-EEEccccccccCcCCHHHHHHHHhh-hccCCcEEEE
Q 010592 416 YDL-IHAHGLFSLYKDKCNIEDILLEMDR-ILRPEGAIII 453 (506)
Q Consensus 416 ~Dl-v~~~~~~~~~~~~~~~~~~l~e~~R-vLrPgG~~ii 453 (506)
..+ ++-.+.|.... +......|.+|.+ .|+|||.|+|
T Consensus 157 ~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 157 PTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred ccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 343 34444555322 2234579999999 9999999999
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.059 Score=54.33 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCCCC-CCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMPYA-SRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~---~~~~~~d~~~lp~~-~~sfDlV~~ 172 (506)
...+|||+|.|.|.-+.++-+- .++.++.|+ .+.+-.-..+..-... .........+++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 4457999999998655444332 244444444 2222222233222111 01111112345554 446777776
Q ss_pred cCcccccCCCh--HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 173 SRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..-+.|..... ...++.+..++.|||.|++..++.
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 55443422111 347888999999999999987654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0082 Score=60.25 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHH
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHE 137 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~ 137 (506)
+++++.+.+... ++..+||.+||.|.++..+++. .|+++|.++.++..
T Consensus 7 ll~Evl~~L~~~--pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ 59 (296)
T PRK00050 7 LLDEVVDALAIK--PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAA 59 (296)
T ss_pred cHHHHHHhhCCC--CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHH
Confidence 445566666433 3458999999999999999876 27888887654433
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0013 Score=58.46 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=37.0
Q ss_pred CCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 410 STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 410 ~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++-|+|.|+|.|.+++.|+.- ..-..+++|-+|+|||||+|-|.
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 345799999999999997663 34568999999999999999994
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.024 Score=58.95 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=67.1
Q ss_pred CEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEEEcCcc
Q 010592 104 RTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP-YASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlV~~~~~l 176 (506)
.+|||+.||+|..+..++.+ .|+++|+++.-+. ...+.+..++.. +.+...|+..+- .....||+|..-. +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~-~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE-SIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 48999999999999998875 3789999885443 333344444443 456656654332 2235799998743 2
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+..++..+.+.+++||.+.++.
T Consensus 124 ----Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ----GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ----CCcHHHHHHHHHhcccCCEEEEEe
Confidence 234679999999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.008 Score=56.18 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=62.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC---CCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY---PRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~---p~s~Dlv~~ 421 (506)
..+|||+=||+|.++..-+.+|. ..|+-+|.++..+..+.+. ++.....-++.+ +... ...||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 45799999999999998888873 5799999998888876654 222212222222 2222 489999999
Q ss_pred ccccccccCcCC-HHHHHHHHh--hhccCCcEEEEEeCh
Q 010592 422 HGLFSLYKDKCN-IEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~-~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
+-=+. ... ...+|..+. .+|+++|.+|+....
T Consensus 121 DPPY~----~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYA----KGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STT----SCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCcc----cchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 43322 111 355666665 899999999996543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.042 Score=56.38 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=56.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--------------------CcEEEecCccchHHHHHHHHHHc----CCCeEEE--E
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR--------------------NVIAMSFAPRDSHEAQVQFALER----GVPAVIG--V 154 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--------------------~v~~vdis~~di~~~~~~~a~~~----~~~~~~~--~ 154 (506)
...-+|+|+||..|..+..+... .|.--|+-.+|...-...+.... ..+..+. +
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44568999999999776655432 13445777777754443332221 0122222 2
Q ss_pred ec-cccCCCCCCCeeEEEEcCcccccCCCh------------------------H---------------HHHHHHHHhc
Q 010592 155 LG-TIKMPYASRAFDMAHCSRCLIPWGAND------------------------G---------------RYMIEVDRVL 194 (506)
Q Consensus 155 ~d-~~~lp~~~~sfDlV~~~~~l~~~~~~~------------------------~---------------~~l~e~~rvL 194 (506)
.. ...--||++|.|+++++.++ ||.... . .+|+-=.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 22 33444789999999999988 553211 0 3455556678
Q ss_pred CCCeEEEEEcC
Q 010592 195 RPGGYWVLSGP 205 (506)
Q Consensus 195 kPGG~li~~~p 205 (506)
+|||.++++..
T Consensus 174 v~GG~mvl~~~ 184 (334)
T PF03492_consen 174 VPGGRMVLTFL 184 (334)
T ss_dssp EEEEEEEEEEE
T ss_pred ccCcEEEEEEe
Confidence 99999999763
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.26 Score=47.72 Aligned_cols=42 Identities=17% Similarity=0.003 Sum_probs=33.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
....|||-=||+|+.+.+-.+.+ -+..++|.++...++|.+|
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHH
Confidence 45579999999999876665544 5788999999999988877
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.038 Score=54.95 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=88.8
Q ss_pred HHHHHHHHhhCCCCC--CCCCEEEEECCCCChhHHHHhhCCc--EEEecCccchHHHH--HHHHHHcC-C----------
Q 010592 86 DKYIDQLASVIPIKN--GTVRTALDTGCGVASWGAYLWSRNV--IAMSFAPRDSHEAQ--VQFALERG-V---------- 148 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~--~~~~~VLDiGCG~G~~~~~L~~~~v--~~vdis~~di~~~~--~~~a~~~~-~---------- 148 (506)
..++++|..+.+... ....+||--|||.|+++..|+..|. .+=++|--|+--.. ++..+..+ .
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s 211 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS 211 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence 667788888886432 2345899999999999999988753 23334333331111 11111110 0
Q ss_pred --------------C-----------eEE--EEecccc---CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCe
Q 010592 149 --------------P-----------AVI--GVLGTIK---MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGG 198 (506)
Q Consensus 149 --------------~-----------~~~--~~~d~~~---lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG 198 (506)
+ ..+ ..+|... .+-..++||+|+..+. +.-..+.-.++..+..+|||||
T Consensus 212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGG 290 (369)
T ss_pred cccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE-eechHHHHHHHHHHHHhccCCc
Confidence 0 000 0011111 1112347999997652 2322333688999999999999
Q ss_pred EEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeecccc
Q 010592 199 YWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEK 245 (506)
Q Consensus 199 ~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~ 245 (506)
+++=.+|-..+.....+. .....++-..+.+-.+++.++|+.+.+.
T Consensus 291 vWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred EEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEEee
Confidence 999888766443322111 1111233345567777888899887765
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.036 Score=57.30 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccC
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKM 160 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~l 160 (506)
..+.+++.+.++++.. +. .|||+-||+|.++..|++. .|+++++++..+. .+.+.|..+++. +.+...++.++
T Consensus 181 ~~~~l~~~~~~~l~~~--~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~-~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLS--KG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVE-DARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHHHCTT---TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHH-HHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHHHHHhhcC--CC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHH-HHHHHHHHcCCCcceEEEeeccch
Confidence 3366777778888543 22 7999999999999999987 5999999886664 344455555554 55655444322
Q ss_pred C----------------CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 P----------------YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p----------------~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. .....+|+|+.-..-.-. ...++..+. ++.=.+++|..|.
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~~~~---~~~~ivYvSCnP~ 313 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL---DEKVIELIK---KLKRIVYVSCNPA 313 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S---CHHHHHHHH---HSSEEEEEES-HH
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc---hHHHHHHHh---cCCeEEEEECCHH
Confidence 1 123368998764321111 134444443 3455677776544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.13 Score=51.42 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=35.6
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.+.....|||-=||+|+-+.+-.+.+ -+..++|++++-.++|.+|
T Consensus 205 ~S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 205 SSNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 34456679999999999765554433 4789999999999999999
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.2 Score=46.95 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH----HHHHhc-CccceeccccccCCC-CC---CceeEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL----GVIYER-GLIGIYHDWCEAFST-YP---RTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l----~~~~~r-g~~~~~~~~~~~~~~-~p---~s~Dlv 419 (506)
.......||=+|+-+|+-..++.+--. ...+.++..|+.+. .+|.+| .+++.+.| ..+|. |- ...|+|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D--A~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILED--ARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecc--cCCcHHhhhhcccccEE
Confidence 334456899999999999999988422 34577888877654 588888 46677644 33332 22 678999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++ ...++.+.+-+...++.-||+||+++|
T Consensus 150 y~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 150 YQ-----DVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred EE-----ecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 88 122344555688889999999998877
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.043 Score=56.99 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=60.7
Q ss_pred CCEEEEECCCCChhHHHHhhC-------------------CcEEEecCccchHHHHHHHHHH-------------cCCCe
Q 010592 103 VRTALDTGCGVASWGAYLWSR-------------------NVIAMSFAPRDSHEAQVQFALE-------------RGVPA 150 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-------------------~v~~vdis~~di~~~~~~~a~~-------------~~~~~ 150 (506)
..+|+|+|||+|.++..+... .+.--|+-.+|...-...+... .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 458999999999766544221 1333466566664444333210 11111
Q ss_pred EEEEe---ccccCCCCCCCeeEEEEcCcccccCCCh--------------------------------------HHHHHH
Q 010592 151 VIGVL---GTIKMPYASRAFDMAHCSRCLIPWGAND--------------------------------------GRYMIE 189 (506)
Q Consensus 151 ~~~~~---d~~~lp~~~~sfDlV~~~~~l~~~~~~~--------------------------------------~~~l~e 189 (506)
.+..+ ....--||++|.++++++.++ ||.... ..+|+-
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 122334789999999999998 665421 134444
Q ss_pred HHHhcCCCeEEEEEcCCC
Q 010592 190 VDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 190 ~~rvLkPGG~li~~~p~~ 207 (506)
-.+-|.|||.++++....
T Consensus 223 Ra~ELvpGG~mvl~~~Gr 240 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGR 240 (386)
T ss_pred HHHHhccCcEEEEEEecC
Confidence 566789999999986433
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=50.72 Aligned_cols=144 Identities=13% Similarity=0.033 Sum_probs=83.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--cc----eecccccc----CCCCCC-ceeEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--IG----IYHDWCEA----FSTYPR-TYDLI 419 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--~~----~~~~~~~~----~~~~p~-s~Dlv 419 (506)
..++||=||-|.|+.+..+.+.+ .+.+|+.+|+++.+++++++-- . .+ .+.-..++ +...++ .||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 57899999999999999998754 2357888899999999887631 1 00 00000111 222445 99999
Q ss_pred EEccccccccCc-CCHHHHHHHHhhhccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeec-CCC-CCCCeEEEE
Q 010592 420 HAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDH-EDG-PLVPEKILV 491 (506)
Q Consensus 420 ~~~~~~~~~~~~-~~~~~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~-~~~-~~~~~~~l~ 491 (506)
.....=...... .--...+..+.|.|+|||.+++.-. ......+.+.+++..-.+..... ... +..-+.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~ 234 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFAS 234 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEE
Confidence 983332111100 1124789999999999999999532 22444455556666555543222 111 111245677
Q ss_pred EEecc
Q 010592 492 AVKQY 496 (506)
Q Consensus 492 ~~k~~ 496 (506)
+.|..
T Consensus 235 ~s~~~ 239 (246)
T PF01564_consen 235 ASKDI 239 (246)
T ss_dssp EESST
T ss_pred EeCCC
Confidence 77654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.021 Score=50.83 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=37.4
Q ss_pred CCCceEEeecCcccHHHHHHHh-----CCCeEEEEeecCCCcccHHHHHhc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQS-----SKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~-----~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.+...|+|+|||-|.++..|+. . ...+|+++|..+..++.+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 5677899999999999999987 3 357999999998888877766
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.1 Score=49.83 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCEEEEECCCCChhHHHHh----hCCcEEEecCccchHHHHHH-HHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLW----SRNVIAMSFAPRDSHEAQVQ-FALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~----~~~v~~vdis~~di~~~~~~-~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
+.+++|||+|.|.-+..|+ +.+++-+|-...-+ +..+ ...+-+++ +.+...-++.+.-...-||+|+|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 4699999999997666655 22577777654322 2222 34455666 566655566554221119999996532
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEE
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
. ...++.-+...+|+||.++.
T Consensus 146 -~----L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 -S----LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -c----hHHHHHHHHHhcccCCcchh
Confidence 2 35677778899999998764
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.024 Score=59.00 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=64.8
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--cceeccccccCCC----CCCceeEEEEcccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--IGIYHDWCEAFST----YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--~~~~~~~~~~~~~----~p~s~Dlv~~~~~~~~ 427 (506)
+|||+-||+|.++..++....-+-.|+++|.++..++.+.+.- + +..+.-.+.+... ....||+|..+- |.
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG- 124 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG- 124 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC-
Confidence 6999999999999999876211357999999999998776632 1 1111112222221 125799999854 42
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.....|...-+.+++||+|.|+
T Consensus 125 -----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 -----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -----CcHHHHHHHHHhcccCCEEEEE
Confidence 2346888999999999999995
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.0037 Score=56.08 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=36.4
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.....||.|+|+.|+ .+.+....+++.+.+.|+|.|.-++..|.-
T Consensus 99 ~eq~tFDiIlaADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 99 QEQHTFDIILAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HhhCcccEEEeccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 345689999999998 334445889999999999999988887754
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.13 Score=52.96 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=75.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC-------------------------------------------cE
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN-------------------------------------------VI 126 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~-------------------------------------------v~ 126 (506)
..|..+....+. ..++|-=||+|.+....+-.+ +.
T Consensus 181 aAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 181 AAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 344444433333 479999999998877665432 55
Q ss_pred EEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEEcCccc-ccCCC--h----HHHHHHHHHhcCCC
Q 010592 127 AMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLI-PWGAN--D----GRYMIEVDRVLRPG 197 (506)
Q Consensus 127 ~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~-~~~~~--~----~~~l~e~~rvLkPG 197 (506)
++|+++.++. .+..+|+..|+. +.|.+.|...++-+-+.+|+|+|+.-.= -+... . ..+.+.+.+.++--
T Consensus 259 G~Did~r~i~-~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 259 GSDIDPRHIE-GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EecCCHHHHH-HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 9999987774 444566666665 7888889888864447899999986331 11111 1 13444566777777
Q ss_pred eEEEEEcCCC
Q 010592 198 GYWVLSGPPI 207 (506)
Q Consensus 198 G~li~~~p~~ 207 (506)
+.++++++..
T Consensus 338 s~~v~tt~e~ 347 (381)
T COG0116 338 SRYVFTTSED 347 (381)
T ss_pred ceEEEEccHH
Confidence 8888886543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.033 Score=55.08 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=65.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHH---cCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALE---RGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~---~~~~~~~~~~d~~~l 160 (506)
...++.|.+.+... .+..|||||+|.|.++..|++. .++++++++... +.-.+ ...++.+...|...+
T Consensus 16 ~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~-----~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLA-----KHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHH-----HHHHHHCTTCSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHH-----HHHHHHhhhcccceeeecchhcc
Confidence 55667777777543 4559999999999999999886 589999976322 22222 345677888888777
Q ss_pred CCCC---CCeeEEEEcCcccccCCChHHHHHHHHHhcCC
Q 010592 161 PYAS---RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP 196 (506)
Q Consensus 161 p~~~---~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkP 196 (506)
.... +.-..|+++..+ + -...++..+...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy-~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPY-N---ISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEETG-T---GHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEecc-c---chHHHHHHHhhcccc
Confidence 6544 456677776432 2 125666666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.056 Score=54.49 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=62.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeE--EEEeecCCCcccHHHHHh--cCccceeccc-----cccCCCCC--CceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWV--MNVVPTLADKNTLGVIYE--RGLIGIYHDW-----CEAFSTYP--RTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~--~~v~~~d~~~~~l~~~~~--rg~~~~~~~~-----~~~~~~~p--~s~Dlv~ 420 (506)
...+|||+|.|+|.-+-++.+ +|- -.++-+.+|+..-+++.. +.......+| .++...+| ..|++++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhh
Confidence 344699999999987766644 331 234445566443333332 1221222222 12233344 8899888
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+.+=+-+....-.+...+..+..+|.|||.|+|.+.-
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 8555544443334566888899999999999997653
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.047 Score=51.50 Aligned_cols=119 Identities=17% Similarity=0.278 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceeccc
Q 010592 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDW 405 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~ 405 (506)
..|.+.+-+- +...+. .+.++||.||=|-|..+-.+++++.. .=+-+...++.++.-++-|- +....-|
T Consensus 84 m~WEtpiMha--~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~nViil~g~W 158 (271)
T KOG1709|consen 84 MRWETPIMHA--LAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKENVIILEGRW 158 (271)
T ss_pred hhhhhHHHHH--HHHHHh-hCCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccceEEEecch
Confidence 4676655432 122233 45788999999999999999886532 23345678888888877663 3444457
Q ss_pred cccCCCCC-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh
Q 010592 406 CEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD 458 (506)
Q Consensus 406 ~~~~~~~p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~ 458 (506)
...++++| ..||-|.- ..|+ .+-.++-..-+-+-|.|||||.+-.-....
T Consensus 159 eDvl~~L~d~~FDGI~y-DTy~--e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 159 EDVLNTLPDKHFDGIYY-DTYS--ELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred HhhhccccccCcceeEe-echh--hHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 78888888 89999885 3332 123366677888999999999998855443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.038 Score=51.64 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=60.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------------cceeccccccCCCCCCceeEEEE
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------------IGIYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------------~~~~~~~~~~~~~~p~s~Dlv~~ 421 (506)
...|||||+|++...|...- ...-+.++++-...-+...+|-. +++.+. -++-++|+-|---..
T Consensus 63 efaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~--namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRT--NAMKFLPNFFEKGQL 139 (249)
T ss_pred eEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeec--cchhhccchhhhccc
Confidence 48999999999998887641 22345555544333333333310 222222 223334544442222
Q ss_pred ccccccc--------cCcCCH--HHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhcCC
Q 010592 422 HGLFSLY--------KDKCNI--EDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMR 471 (506)
Q Consensus 422 ~~~~~~~--------~~~~~~--~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~ 471 (506)
+-.|-.. +|+-.+ ...|.|..=+||+||.++.. |-.+.-+.+...+....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 2222211 111111 25888999999999998874 54455555555555444
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.03 Score=53.42 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=62.5
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCc---cceecc-cccc----CCCCC-
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL---IGIYHD-WCEA----FSTYP- 413 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~---~~~~~~-~~~~----~~~~p- 413 (506)
.++.-..++.||+|.=||.-+.+++..--....|+++|..++..+++.+ .|. +...+. -++. +..++
T Consensus 68 li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 68 LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence 3444456789999977776544443221113689999998777765543 233 222211 1122 22244
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+|||+++. .+.+ ..-.....+.-|.|||||.+++-
T Consensus 148 ~tfDfaFv----DadK--~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 148 GTFDFAFV----DADK--DNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CceeEEEE----ccch--HHHHHHHHHHHhhcccccEEEEe
Confidence 89999998 3222 12236888899999999999993
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.13 Score=53.18 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=72.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCC-eEEEEeecCCCcccHHHHHhc----Cccc--eeccccccCCC-CC--Cce
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKL-WVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFST-YP--RTY 416 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~-~~~~v~~~d~~~~~l~~~~~r----g~~~--~~~~~~~~~~~-~p--~s~ 416 (506)
.+.......||||++++|+=+.+|++.-. ....|+++|.++.-+....++ |+.. ..+.-...++. .+ ..|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 34555668899999999997777765321 124579999998877765554 4422 11111111222 23 259
Q ss_pred eEEEE------cccccc---c---cCcCCHH-------HHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhc
Q 010592 417 DLIHA------HGLFSL---Y---KDKCNIE-------DILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGG 469 (506)
Q Consensus 417 Dlv~~------~~~~~~---~---~~~~~~~-------~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~ 469 (506)
|.|.. .+++.. . ....++. .+|....++|||||.|+-+. ..+-...++.++.+
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 98886 234420 0 0011111 48999999999999999953 23334455555544
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.041 Score=58.24 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~ 158 (506)
..++.+...+.+++.+..+ ..+||+-||||.++..+++. .|+++++++..+. .+...|..+|+. +.|.++.++
T Consensus 366 ~~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~-dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVE-DAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhccccceeeeecChhhcc-hhhhcchhcCccceeeeecchh
Confidence 3446666778888866655 48999999999999999987 6999999997664 444556666665 566665443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.0083 Score=50.41 Aligned_cols=95 Identities=17% Similarity=0.063 Sum_probs=35.9
Q ss_pred EeecCcccHHHHHHHhCC--CeEEEEeecCCCc---ccHHHHHhcCccceeccccccC----CCCC-CceeEEEEccccc
Q 010592 357 MDMNAGFGGFAAAIQSSK--LWVMNVVPTLADK---NTLGVIYERGLIGIYHDWCEAF----STYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 357 LD~gcG~G~~~~~l~~~~--~~~~~v~~~d~~~---~~l~~~~~rg~~~~~~~~~~~~----~~~p-~s~Dlv~~~~~~~ 426 (506)
|++|+..|..+..|++.- .-...++.+|..+ ...+.+.+.++...++....++ +.++ +.||+|+...-=
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H- 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH- 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-
Confidence 578999999877776521 0113688888876 3444554444433333333333 2344 899999983311
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.......-|..+.+.|+|||.+++-|
T Consensus 80 ---~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 ---SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11234567888889999999999865
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.071 Score=49.52 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchH-------HHHHHHHHHcCCCeE-EEEeccccCC-------C
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSH-------EAQVQFALERGVPAV-IGVLGTIKMP-------Y 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~-------~~~~~~a~~~~~~~~-~~~~d~~~lp-------~ 162 (506)
++.+|+|+=.|.|+|++.++.. | .+..+.|.+.. ......+++....+. ..-.....++ .
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~ 126 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLV 126 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccccc
Confidence 4559999999999999998775 3 33344443331 111112222111111 1101111222 1
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..++|.++-...+ | ......+..++++.|||||.+.+..+..
T Consensus 127 ~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 127 PTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred ccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 23344444443322 3 2334789999999999999999976433
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.019 Score=51.62 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=78.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhcCcccee--------ccccccCCCCCCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYERGLIGIY--------HDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~rg~~~~~--------~~~~~~~~~~p~s~Dlv~~ 421 (506)
.+.||.+|.|.=++|..|....+.+-.|--.|..+..+. -+..+.....+ +.|.......-.+||+|.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 467999999999999888776555667777776644443 33333211111 1122222222379999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh--hhHHHHHHHHhcCCceEEEe
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--~~~~~~~~~~~~~~w~~~~~ 477 (506)
+.-+=.-.++ +.++.-|.+.|||.|..++.-+- ..+++..+.+...++.+...
T Consensus 110 ADClFfdE~h---~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 110 ADCLFFDEHH---ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred ccchhHHHHH---HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEec
Confidence 4433222222 35888899999999998886543 36788888888888887654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.4 Score=45.00 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=73.2
Q ss_pred HHHHHHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC---C-cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR---N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~---~-v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
..+...|..-+. .+-..+.+||=+|+.+|....++++- | +.++++|+... ...+..+.+|. ++.-...|+ +.
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R~-Ni~PIL~DA-~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKRP-NIIPILEDA-RK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhCC-Cceeeeccc-CC
Confidence 344444544442 23344569999999999877777653 4 88999999766 55667777763 223233343 33
Q ss_pred C----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 P----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
| .--+..|+|++--+ + .....-+..++..-||+||+++++.
T Consensus 136 P~~Y~~~Ve~VDviy~DVA--Q-p~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA--Q-PNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cHHhhhhcccccEEEEecC--C-chHHHHHHHHHHHhcccCCeEEEEE
Confidence 3 12346899998432 1 2223678888999999999888864
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.056 Score=54.12 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=65.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEE-eccccC-C-CCCCCeeEEEE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGV-LGTIKM-P-YASRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~-~d~~~l-p-~~~~sfDlV~~ 172 (506)
.++..|||+.+|.|.=+..+++. .+++.|+++.-+ ........+.|....... .|.... + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34558999999999877777654 388999977533 233334445565544433 555443 2 22346999995
Q ss_pred ----cCcccccCCCh------------------HHHHHHHHHhc----CCCeEEEEEcCC
Q 010592 173 ----SRCLIPWGAND------------------GRYMIEVDRVL----RPGGYWVLSGPP 206 (506)
Q Consensus 173 ----~~~l~~~~~~~------------------~~~l~e~~rvL----kPGG~li~~~p~ 206 (506)
+... .+..++ ..+|..+.+.| ||||+++.++-.
T Consensus 163 DaPCSg~G-~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLG-TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGG-GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccchh-hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 3221 111111 16789999999 999999998743
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.24 Score=52.59 Aligned_cols=119 Identities=13% Similarity=0.216 Sum_probs=78.4
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccCCCCC---
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAFSTYP--- 413 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~~~~p--- 413 (506)
.+..+...+..+|||+=||.|+|+..|+++. ..|.+++.++.+++.|.+- |+ .+.+.-+ +.+..-.
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i-~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHHhhhcccc
Confidence 3344455556789999999999999999753 7899999999999876653 32 2222222 2222211
Q ss_pred CceeEEEEccccccccCcCCHH-HHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCce
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIE-DILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~-~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~ 473 (506)
..+|+|.. . ++|..+. .+++++ --++|-..++|+-....+..=-.++.+-+..
T Consensus 361 ~~~d~Vvv----D--PPR~G~~~~~lk~l-~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 361 YKPDVVVV----D--PPRAGADREVLKQL-AKLKPKRIVYVSCNPATLARDLAILASTGYE 414 (432)
T ss_pred CCCCEEEE----C--CCCCCCCHHHHHHH-HhcCCCcEEEEeCCHHHHHHHHHHHHhCCeE
Confidence 47798887 1 2466665 566666 4578999999998876554434445555554
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.083 Score=51.96 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=52.4
Q ss_pred CCCEEEEECCCCC--hhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCC--C----CCCC
Q 010592 102 TVRTALDTGCGVA--SWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMP--Y----ASRA 166 (506)
Q Consensus 102 ~~~~VLDiGCG~G--~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp--~----~~~s 166 (506)
..+..||||||-- ...-.++++ .|.-+|..|..+..+..-++ .... ..+..+|..+.. + -.+-
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 4568999999954 345555443 58889998754432222222 2233 567777753211 0 0112
Q ss_pred ee-----EEEEcCcccccCC--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 167 FD-----MAHCSRCLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fD-----lV~~~~~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+| .|+...++++..+ ++..++..+...|.||.+|+++..
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 22 3555566766544 447999999999999999999853
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.029 Score=51.18 Aligned_cols=110 Identities=17% Similarity=0.329 Sum_probs=57.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCC-C-ceeEEEEc-
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYP-R-TYDLIHAH- 422 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p-~-s~Dlv~~~- 422 (506)
++|+|+.||.||-+..++... -.|+++|.++..+..|..- |+...+...+.++ +... + .||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999999864 5799999999999987664 3222223333332 2233 2 28999973
Q ss_pred ----------ccccc--ccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHh
Q 010592 423 ----------GLFSL--YKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG 468 (506)
Q Consensus 423 ----------~~~~~--~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~ 468 (506)
..|.. .....++..++..+.++- |.=.+.+ -....+..|.+++.
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t-~nv~l~L-PRn~dl~ql~~~~~ 133 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT-PNVVLFL-PRNSDLNQLSQLTR 133 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S-EEEEE-ETTB-HHHHHHT--
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhC-CCEEEEe-CCCCCHHHHHHHhc
Confidence 24444 122224556666665553 3322222 22223455555543
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.079 Score=48.92 Aligned_cols=92 Identities=18% Similarity=0.111 Sum_probs=60.4
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~-----~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
..+.|+|+|+|.++...++. +|.+++.+|.- ...|.++ ..+......|+....| ...|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~-----a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKR-----ARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHH-----HHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 37899999999877666554 69999987642 2334433 2335666777777777 468999984321
Q ss_pred cccCCC-hHHHHHHHHHhcCCCeEEEE
Q 010592 177 IPWGAN-DGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~~~-~~~~l~e~~rvLkPGG~li~ 202 (506)
..+... .-..+..+...||-.+.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 112222 24677777778888888764
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.37 Score=48.13 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=46.2
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE--------EeChh---------hHHHHHHHHhcCCceEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII--------RDEVD---------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii--------~d~~~---------~~~~~~~~~~~~~w~~~~ 476 (506)
++||+|.....+... .++-+.|.-|..+|||||..|= .|..+ ..+.|..+++.++|++..
T Consensus 258 ~~~d~VvTcfFIDTa---~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTA---HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEeech---HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 479988876555422 2677899999999999998764 34211 568899999999999775
Q ss_pred ee
Q 010592 477 VD 478 (506)
Q Consensus 477 ~~ 478 (506)
.+
T Consensus 335 e~ 336 (369)
T KOG2798|consen 335 ER 336 (369)
T ss_pred ee
Confidence 44
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.1 Score=47.65 Aligned_cols=69 Identities=26% Similarity=0.236 Sum_probs=41.8
Q ss_pred EEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC--CCCCC-eeEEEEcC
Q 010592 105 TALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP--YASRA-FDMAHCSR 174 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp--~~~~s-fDlV~~~~ 174 (506)
.|+|+.||.|..+..++.. .|+++|+++.-+ +-+...|.-.|+ ++.+..+|...+. +.... ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999999987 499999977544 233344554554 4677777764432 22222 89999753
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.33 Score=50.30 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=65.5
Q ss_pred CCCCCCEEEEECCCCChhHHHHhh----CC-cEEEecCccchHHHHHHHHHHcCCCeEE-EEeccccCC---CCCCCeeE
Q 010592 99 KNGTVRTALDTGCGVASWGAYLWS----RN-VIAMSFAPRDSHEAQVQFALERGVPAVI-GVLGTIKMP---YASRAFDM 169 (506)
Q Consensus 99 ~~~~~~~VLDiGCG~G~~~~~L~~----~~-v~~vdis~~di~~~~~~~a~~~~~~~~~-~~~d~~~lp---~~~~sfDl 169 (506)
.+.++.+|||+.+..|.=+.+++. .| +.+.|.+..-+ +...+.+.+-|+...+ ...|...+| ++. +||-
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 345677999999999954444433 35 56777655333 3334455555665443 444555554 444 8999
Q ss_pred EE----EcCcccccCC-----------------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 170 AH----CSRCLIPWGA-----------------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 170 V~----~~~~l~~~~~-----------------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+ |+.+-.-+.+ -...+|..+...+++||+|+.++-..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99 4441111100 01367888899999999999987444
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.26 Score=45.98 Aligned_cols=109 Identities=21% Similarity=0.325 Sum_probs=69.4
Q ss_pred HHhhhcCC--CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc---cceecc-ccccCCCC
Q 010592 343 KINRLLDS--GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHD-WCEAFSTY 412 (506)
Q Consensus 343 ~~~~~~~~--~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~---~~~~~~-~~~~~~~~ 412 (506)
.++..+.. -....+||+=||+|.++..-+.+|. ..++-+|.+...+.++.+- ++ ...++. -...++..
T Consensus 32 alFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 34444443 3455799999999999998888874 5788889888888877664 11 111111 11112223
Q ss_pred C--CceeEEEEccccccccCcCCH--HH--HHHHHhhhccCCcEEEEEeCh
Q 010592 413 P--RTYDLIHAHGLFSLYKDKCNI--ED--ILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 413 p--~s~Dlv~~~~~~~~~~~~~~~--~~--~l~e~~RvLrPgG~~ii~d~~ 457 (506)
. ..||+|+.+-=|. ..-+ +. .+.+-..+|+|+|.+++....
T Consensus 110 ~~~~~FDlVflDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 110 GTREPFDLVFLDPPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCCcccEEEeCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 3 3599999965554 2222 22 333366899999999996554
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.015 Score=55.26 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=79.9
Q ss_pred hhhhhhHHHHHHHHHHhh-----hcCCCCCceEEeecCcccHHHHHHHhCC--------CeEEEEeecCCCcccHHHH--
Q 010592 329 EDSNKWKKHVNAYKKINR-----LLDSGRYRNIMDMNAGFGGFAAAIQSSK--------LWVMNVVPTLADKNTLGVI-- 393 (506)
Q Consensus 329 ~d~~~W~~~v~~y~~~~~-----~~~~~~~r~vLD~gcG~G~~~~~l~~~~--------~~~~~v~~~d~~~~~l~~~-- 393 (506)
+..+.|+.+-.. +|+. .|-.+ .++|.|+++.+|.+...|.++= .-.-.++++|+. .|..+-
T Consensus 16 AKe~gwRARSAF--KLlqideef~i~~g-v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ-~MaPI~GV 91 (294)
T KOG1099|consen 16 AKENGWRARSAF--KLLQIDEEFQIFEG-VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQ-PMAPIEGV 91 (294)
T ss_pred HHhccchHHhHH--HHhhhhhhhhHHhh-hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecc-cCCccCce
Confidence 445677765442 2222 22223 7789999999999988886421 101138999987 666532
Q ss_pred -HhcCccceeccccccCCCCC-CceeEEEEccccccc--------cCcCCHHHHHHHHhhhccCCcEEEE-----EeChh
Q 010592 394 -YERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY--------KDKCNIEDILLEMDRILRPEGAIII-----RDEVD 458 (506)
Q Consensus 394 -~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~~~--------~~~~~~~~~l~e~~RvLrPgG~~ii-----~d~~~ 458 (506)
.-+|-|........-+..+. .--|+|.|.++=... .+..-+..+|.=..+||||||.|+- +|..-
T Consensus 92 ~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tsl 171 (294)
T KOG1099|consen 92 IQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSL 171 (294)
T ss_pred EEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHH
Confidence 11111111110111122344 478899996653311 1122233577777899999999986 34444
Q ss_pred hHHHHHHHHhcCCc
Q 010592 459 EIIKVKKIVGGMRW 472 (506)
Q Consensus 459 ~~~~~~~~~~~~~w 472 (506)
.-..|+.++++..-
T Consensus 172 Lysql~~ff~kv~~ 185 (294)
T KOG1099|consen 172 LYSQLRKFFKKVTC 185 (294)
T ss_pred HHHHHHHHhhceee
Confidence 55677888777643
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.55 Score=46.64 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=68.3
Q ss_pred CceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHh--c---CccceeccccccCCC--CC-CceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE--R---GLIGIYHDWCEAFST--YP-RTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~--r---g~~~~~~~~~~~~~~--~p-~s~Dlv~~~~ 423 (506)
-++|+=||+|+=-+++.+..+ -.....|+.+|.+++.++.++. + |+-..+...|.+... .+ ..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 358999999988777766542 1224678899999888887643 1 231111222333322 23 7899988755
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.... ...+...+|..+.+.++||..+++|-..+ .+....+...--+|++...-+-.++ .-.-++++||.
T Consensus 201 lVg~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~-ViNSvv~~rk~ 272 (276)
T PF03059_consen 201 LVGM--DAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDE-VINSVVFARKK 272 (276)
T ss_dssp T-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT----EEEEE---
T ss_pred hccc--ccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCC-ceeEEEEEEec
Confidence 5442 23467889999999999999999996543 1111111112228987655554333 23557888885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.24 Score=46.08 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCceEEeecCcccHHHHHHHhC---CCeEEEEeecCCC-------cccHHHHHhcCccceecccc---ccCCCCCCceeE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLAD-------KNTLGVIYERGLIGIYHDWC---EAFSTYPRTYDL 418 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~---~~~~~~v~~~d~~-------~~~l~~~~~rg~~~~~~~~~---~~~~~~p~s~Dl 418 (506)
...+|.|+=-|-|.|.+-|... ...|-+++|.+.. +.+-.++++.+. .+..-.. -++. .|+-.|+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCCcccc
Confidence 3467999999999998877642 2256777777652 122223333332 1110001 1222 3466666
Q ss_pred EEEcccccc----ccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 419 IHAHGLFSL----YKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 419 v~~~~~~~~----~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+...+.-+. ..|......+..++++.|||||.+.+.|.
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 655333321 22344567899999999999999999653
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.69 Score=47.85 Aligned_cols=122 Identities=14% Similarity=0.249 Sum_probs=68.5
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc---cccCCC--
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW---CEAFST-- 411 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~---~~~~~~-- 411 (506)
|...+..+...+. +|||+-||.|.|+..|++.. -.|++++..+++++.|.+- ++ ..+... ++++..
T Consensus 186 ~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 186 YEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHH
T ss_pred HHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHH
Confidence 3334444444433 69999999999999999875 4799999999999877653 32 222221 222211
Q ss_pred --------C-----C-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEE
Q 010592 412 --------Y-----P-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 412 --------~-----p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~ 476 (506)
. . ..+|+|.. . ++|..+...+.++ +.++.=.++|+-... ....++.+.+ +|++..
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vil----D--PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~~ 330 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVIL----D--PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLEK 330 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEEE
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEE----c--CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEEE
Confidence 1 1 26788876 1 2344443333333 235667888886654 4556665543 788664
Q ss_pred e
Q 010592 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 331 v 331 (352)
T PF05958_consen 331 V 331 (352)
T ss_dssp E
T ss_pred E
Confidence 3
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.41 Score=48.71 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=76.5
Q ss_pred cCCCCCCChhhH-HHHHHHHHhhCCCC-CCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH--
Q 010592 74 FPGGGTQFPQGA-DKYIDQLASVIPIK-NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE-- 145 (506)
Q Consensus 74 f~~~~~~f~~~~-~~~~~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~-- 145 (506)
+..++-||...- ..|-+.+. .-+.. -...++||-+|.|.|--++.|.+. .++-+|++|.|++-+....+..
T Consensus 260 YldG~LQfsTrDe~RYhEsLV-~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~ 338 (508)
T COG4262 260 YLDGGLQFSTRDEYRYHESLV-YPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL 338 (508)
T ss_pred EEcCceeeeechhhhhhheee-ecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh
Confidence 455666665444 33322221 11111 123468999999999999999886 5888999988776554222221
Q ss_pred -c----CCCeEEEEecccc-CCCCCCCeeEEEEcCcccccCCCh-----HHHHHHHHHhcCCCeEEEEEc
Q 010592 146 -R----GVPAVIGVLGTIK-MPYASRAFDMAHCSRCLIPWGAND-----GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 146 -~----~~~~~~~~~d~~~-lp~~~~sfDlV~~~~~l~~~~~~~-----~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ...+.....|+.+ +.-..+.||.|+.-.. .+-.+.. ..+..-+.|.|+++|.+++..
T Consensus 339 N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 339 NQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 1 1234445445433 2334568999997431 1111101 267778889999999999964
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.07 Score=47.13 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=33.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
+|||+|||+|.++..++..+. ...|+++|.++.+.+.+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHH
Confidence 489999999999998887642 23799999999998866654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.43 Score=49.70 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=43.0
Q ss_pred CceEEeecCcccHHHHHHH--------hC------CCeEEEEeecCCCcccHHHHHhcCccce-----------------
Q 010592 353 YRNIMDMNAGFGGFAAAIQ--------SS------KLWVMNVVPTLADKNTLGVIYERGLIGI----------------- 401 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~--------~~------~~~~~~v~~~d~~~~~l~~~~~rg~~~~----------------- 401 (506)
.-+|+|+|||+|..+..+. ++ ......|.--|.+.|--...+.. +...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~-L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQL-LPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhh-chhhhhhhcchhhhccccCCC
Confidence 4579999999997654432 11 12236677777775554433322 1100
Q ss_pred -e--ccccccCCC--CC-CceeEEEEcccccccc
Q 010592 402 -Y--HDWCEAFST--YP-RTYDLIHAHGLFSLYK 429 (506)
Q Consensus 402 -~--~~~~~~~~~--~p-~s~Dlv~~~~~~~~~~ 429 (506)
+ ...-..|-. +| +|.+++|++..++++.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 0 000011111 56 9999999999988654
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.025 Score=47.43 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=37.8
Q ss_pred EEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccC-C-CCCCCeeEEEEcCc
Q 010592 107 LDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKM-P-YASRAFDMAHCSRC 175 (506)
Q Consensus 107 LDiGCG~G~~~~~L~~~-------~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~l-p-~~~~sfDlV~~~~~ 175 (506)
||||+..|..+..+++. .+.++|..+. .+...+..++.+ ..+.+...+.... + ++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999887777653 3788888663 112222222222 2366666665322 1 33578999998542
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 176 LIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
|-.+.....+..+.+.|+|||.+++-
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 32222357788899999999999875
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.21 Score=50.05 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhhCCCCCC---CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEE
Q 010592 83 QGADKYIDQLASVIPIKNG---TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIG 153 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~---~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~ 153 (506)
.+...|+.-|.++|..... ...++||||+|....-..|..+ .++|+||++..+..+........++. +.+.
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred chhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 3446777778887743221 2458999999988554444433 58899998876655555544432443 3333
Q ss_pred Eecc-c----cCCCCCCCeeEEEEcCcccc
Q 010592 154 VLGT-I----KMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 154 ~~d~-~----~lp~~~~sfDlV~~~~~l~~ 178 (506)
.... . .+..+...||+.+|+.-|+.
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EcCCccccchhhhcccceeeEEecCCcccc
Confidence 2221 1 12223468999999987633
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.18 Score=44.69 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=56.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCC--C-CceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTY--P-RTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~--p-~s~Dlv~~~~~~~~ 427 (506)
...++|+|||.|.+..+..-.+ .-.|+++|+.++.|++...... --...-+|.++-+. . +.||.+.-+.=|..
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 4469999999999764443322 2479999999999998764432 00111223333322 2 89999999888886
Q ss_pred ccCcCCHHH--HHHHHhh
Q 010592 428 YKDKCNIED--ILLEMDR 443 (506)
Q Consensus 428 ~~~~~~~~~--~l~e~~R 443 (506)
-....+++. +-.+|.+
T Consensus 127 k~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 127 KKKGADMEFVSAALKVAS 144 (185)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 666667653 3344444
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.032 Score=47.14 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=29.0
Q ss_pred eeEEEEccccc--cccCcC-CHHHHHHHHhhhccCCcEEEEE
Q 010592 416 YDLIHAHGLFS--LYKDKC-NIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 416 ~Dlv~~~~~~~--~~~~~~-~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
||+|.|-+|-- |+.+.. .+..++..|++.|||||.||+.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 89999954433 333332 4678999999999999999993
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.25 Score=48.44 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=64.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--cc--ceeccccccCCCCC-CceeEEEEc----
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LI--GIYHDWCEAFSTYP-RTYDLIHAH---- 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~--~~~~~~~~~~~~~p-~s~Dlv~~~---- 422 (506)
....||.+|-|||.+...|.+.+ .+|++++..+.|+....+|+ .. +-+.-.-.++-..+ -.||++.++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQ 134 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCcc
Confidence 34579999999999999999987 58999999999999999884 22 21211223443344 678887772
Q ss_pred ----cccccccCc----CCHH--HHHHHHhhhccCCcEEEEEeC
Q 010592 423 ----GLFSLYKDK----CNIE--DILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 423 ----~~~~~~~~~----~~~~--~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+|-.+.++ |.+. ..-.-+.-+-|||-.++.+=+
T Consensus 135 ISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrls 178 (315)
T KOG0820|consen 135 ISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLS 178 (315)
T ss_pred ccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceee
Confidence 334344433 3211 111111226678887777543
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.35 Score=45.15 Aligned_cols=100 Identities=24% Similarity=0.330 Sum_probs=61.9
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCc-cceeccccccCCCCCCceeEEEEcc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL-IGIYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~ 423 (506)
.+-..++|||+|+|.|--+.+-+..| ...|+..|..+...+.+.- .|. +...| .+.-.-|..||+|.++.
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~---~d~~g~~~~~Dl~LagD 150 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVSILFTH---ADLIGSPPAFDLLLAGD 150 (218)
T ss_pred cccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccceeEEee---ccccCCCcceeEEEeec
Confidence 44456789999999998655544443 2568888887655553321 121 33443 23323569999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+|= ++..-..++.=.+|...-|-.++|-|+
T Consensus 151 lfy---~~~~a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 151 LFY---NHTEADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred eec---CchHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 886 444445566655555556666666554
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.19 Score=50.37 Aligned_cols=126 Identities=19% Similarity=0.264 Sum_probs=74.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc--ee-ccccccCCCCC-CceeEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IY-HDWCEAFSTYP-RTYDLI 419 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~--~~-~~~~~~~~~~p-~s~Dlv 419 (506)
+.......||||+|+.|+-+.+|++.-.-...+++.|.+++-+....++ |+.. .. .+-....+..+ ..||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 4445566799999999997776665211124799999998888766553 4321 11 11111111123 459988
Q ss_pred EEc----cccccccCcCCHH----------------HHHHHHhhhc----cCCcEEEEEe----ChhhHHHHHHHHhcC-
Q 010592 420 HAH----GLFSLYKDKCNIE----------------DILLEMDRIL----RPEGAIIIRD----EVDEIIKVKKIVGGM- 470 (506)
Q Consensus 420 ~~~----~~~~~~~~~~~~~----------------~~l~e~~RvL----rPgG~~ii~d----~~~~~~~~~~~~~~~- 470 (506)
..+ +.-. +....++. .+|....+.| ||||+++-+. ..+-.+.++.++++.
T Consensus 161 lvDaPCSg~G~-i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 161 LVDAPCSGLGT-IRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEECSCCCGGG-TTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred hcCCCccchhh-hhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 862 2211 11122221 4899999999 9999999964 233455666666654
Q ss_pred CceE
Q 010592 471 RWDT 474 (506)
Q Consensus 471 ~w~~ 474 (506)
.|+.
T Consensus 240 ~~~l 243 (283)
T PF01189_consen 240 DFEL 243 (283)
T ss_dssp SEEE
T ss_pred CcEE
Confidence 4543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.76 E-value=1 Score=44.70 Aligned_cols=101 Identities=10% Similarity=0.146 Sum_probs=54.2
Q ss_pred CCEEEEECCCCChhHHHHhh-C-----CcEEEecCccchHHHHHHHHH---HcCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWS-R-----NVIAMSFAPRDSHEAQVQFAL---ERGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~-~-----~v~~vdis~~di~~~~~~~a~---~~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
+.+|+=||||.=-++..+.. + .++++|+++.....+. +... .-+....+...|....+..-..||+|+.+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 45999999998766655543 2 2678888764332222 1212 12445677777776666555689999976
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...-.-..+...++..+.+.++||..+++..
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 5331111244899999999999999999873
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.23 Score=43.02 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=49.5
Q ss_pred hhhhhhh-hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh
Q 010592 325 ESYQEDS-NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE 395 (506)
Q Consensus 325 ~~f~~d~-~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~ 395 (506)
++|.... .+|+.....|..+.- ..++|+|+|++.|.-+.+++-+|. -.|+++..++...+...+
T Consensus 5 ~yf~~~~c~ywrey~~~Y~~idv-----k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 5 EYFRKLECDYWREYPHAYGMLNV-----YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred HHHHHccchHHHHHHHHhhheee-----cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHH
Confidence 4565544 899999999876533 356899999999999998887763 579999998777776655
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.75 Score=48.72 Aligned_cols=98 Identities=12% Similarity=0.234 Sum_probs=69.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-----ceeccccccCCCCCCceeEEEEcccccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-----GIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-----~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
++|=+|||--.+...|.+.|. .+++-+|.|+-.++.+..++.. -....-...+.+-+.+||+|..-+.+.++.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 799999999999999998775 6789999998888877776531 111000112333449999999876666543
Q ss_pred CcC-------CHHHHHHHHhhhccCCcEEEEE
Q 010592 430 DKC-------NIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 430 ~~~-------~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.-. .....+.|++|+|+|||+++.-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 211 2235889999999999997764
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.28 Score=48.22 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=50.8
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCC--C--ceeEE
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYP--R--TYDLI 419 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p--~--s~Dlv 419 (506)
...+......+||+||+|.|.++..|.+++ -.|++++.++.++++-.++. ....+.-..+++-.++ . .++.|
T Consensus 23 v~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~v 99 (259)
T COG0030 23 VEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKV 99 (259)
T ss_pred HHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEE
Confidence 333444446789999999999999999986 46899999988888887773 1221211224544444 3 57777
Q ss_pred EE
Q 010592 420 HA 421 (506)
Q Consensus 420 ~~ 421 (506)
.+
T Consensus 100 Va 101 (259)
T COG0030 100 VA 101 (259)
T ss_pred EE
Confidence 77
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.21 Score=46.85 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.9
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEec
Q 010592 105 TALDTGCGVASWGAYLWSR----NVIAMSF 130 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdi 130 (506)
...|||||.|.+...|+.. -+.+++|
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehh
Confidence 6899999999999999887 2666666
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.2 Score=41.36 Aligned_cols=131 Identities=18% Similarity=0.158 Sum_probs=67.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----------cceeccccccCCCCC-CceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----------~~~~~~~~~~~~~~p-~s~Dlv~~ 421 (506)
-.+|||+||.+|.+..--.++.-...-|.++|+- .+.--+|. ...+...-|. +| +..|+|.+
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll----h~~p~~Ga~~i~~~dvtdp~~~~ki~e~---lp~r~VdvVlS 142 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL----HIEPPEGATIIQGNDVTDPETYRKIFEA---LPNRPVDVVLS 142 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeee----eccCCCCcccccccccCCHHHHHHHHHh---CCCCcccEEEe
Confidence 4579999999999977665543233456666643 11111221 1111112233 35 88999988
Q ss_pred cccccccc-----CcCCHH---HHHHHHhhhccCCcEEEEE-----eChhhHHHHHHHHhcCCceEEEeecC-CCCCCCe
Q 010592 422 HGLFSLYK-----DKCNIE---DILLEMDRILRPEGAIIIR-----DEVDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPE 487 (506)
Q Consensus 422 ~~~~~~~~-----~~~~~~---~~l~e~~RvLrPgG~~ii~-----d~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~ 487 (506)
+.+=.... |-..++ .+|.=.--.|+|+|.++.. +.......|++.+...+ .+..+ .-..+.|
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk----~vKP~Asr~eS~E 218 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVK----KVKPDASRDESAE 218 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcE----eeCCccccccccc
Confidence 43322111 111111 2333333567899999984 33334455555544332 32222 1112468
Q ss_pred EEEEEEe
Q 010592 488 KILVAVK 494 (506)
Q Consensus 488 ~~l~~~k 494 (506)
.+++|++
T Consensus 219 ~y~v~~~ 225 (232)
T KOG4589|consen 219 TYLVCLN 225 (232)
T ss_pred eeeeeee
Confidence 8999876
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.36 Score=47.09 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=70.2
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc----------------eecc-ccccCCC
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG----------------IYHD-WCEAFST 411 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~----------------~~~~-~~~~~~~ 411 (506)
+.+..-+|||+=+|+|..+..++..| ..|+.++-++-+..+.. .|+-. .++. -.+-+..
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~-dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~ 160 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLD-DGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHH-HHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence 33333389999999999999999987 45999998865444322 22211 1111 0111222
Q ss_pred CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC
Q 010592 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 412 ~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.+.+||+|+.+-.|.+-... ..+.+|| |+++. |+ -++.+..+-|+.-+...+=+|.+-+..
T Consensus 161 ~~~~fDVVYlDPMfp~~~ks---a~vkk~m-r~~~~---l~-g~d~d~~~lL~~Al~~A~kRVVVKrp~ 221 (250)
T PRK10742 161 ITPRPQVVYLDPMFPHKQKS---ALVKKEM-RVFQS---LV-GPDLDADGLLEPARLLATKRVVVKRPD 221 (250)
T ss_pred CCCCCcEEEECCCCCCCccc---cchhhhH-HHHHH---hc-CCCCChHHHHHHHHHhcCceEEEecCC
Confidence 34689999999999853322 3366777 55542 11 122233445566666666666665554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.21 Score=44.02 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=27.1
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEecCccchHHHH
Q 010592 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQ 139 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~ 139 (506)
++||||||.|.++..++.. .+.+++.++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999998875 3788888876554333
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.31 Score=46.58 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHhhCC----CCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eE
Q 010592 82 PQGADKYIDQLASVIP----IKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AV 151 (506)
Q Consensus 82 ~~~~~~~~~~l~~~l~----~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~ 151 (506)
.++...|++.++++|. ...++..++||||.|.--.-..+-.+ .+++.|+++..++.+........++. +.
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~ 133 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIR 133 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhee
Confidence 3566778888888883 22345668999998876443333322 46778887776666665555443332 22
Q ss_pred EEEecccc-----CCCCCCCeeEEEEcCccc
Q 010592 152 IGVLGTIK-----MPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 152 ~~~~d~~~-----lp~~~~sfDlV~~~~~l~ 177 (506)
+....... +--..+.||+++|+..+|
T Consensus 134 lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 134 LRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred EEeccCccccccccccccceeeeEecCCCcc
Confidence 22111111 112257899999998763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 506 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-10 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 8e-08 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-07 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 9e-07 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-06 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 2e-06 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 2e-06 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 6e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 7e-06 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 7e-06 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 8e-06 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-05 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 2e-05 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 3e-05 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 3e-05 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 4e-05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 5e-05 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 6e-05 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 8e-05 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-04 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 2e-04 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 2e-04 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-04 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 3e-04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 3e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 3e-04 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 3e-04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 4e-04 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 4e-04 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 5e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 3e-10
Identities = 72/462 (15%), Positives = 127/462 (27%), Gaps = 152/462 (32%)
Query: 64 WI---QYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
W + E V +F + Y L S PIK + ++ T Y+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLR-----INY-KFLMS--PIKTEQRQPSMMTR-------MYI 113
Query: 121 WSRN-------VIAMSFAPRDSHEAQVQFAL-----ERGVPAVIGVLGTIKMPYASRAFD 168
R+ V A R +++ AL + V + GVLG+ K
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGK--------- 163
Query: 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQR 228
+ +V + +W+ N K P+ L+ Q+
Sbjct: 164 -----TWVALDVCLS----YKVQCKMDFKIFWL----------NLKNCNSPETVLEMLQK 204
Query: 229 KIEEIANLLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDA-DDVWYKKM-- 285
+ +I +++ RR + +V K
Sbjct: 205 LLYQIDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 286 ---EGC----ITPYPEVA-------------GGELKAFPER----LYA---------IPP 312
C T + +V L +P
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 313 RISSGSIP---GVSAESYQEDSNKWK--KHVNAYKKINRL-------LDSGRYRNIMDMN 360
+ + + P + AES ++ W KHVN K+ + L+ YR + D
Sbjct: 321 EVLTTN-PRRLSIIAESIRDGLATWDNWKHVN-CDKLTTIIESSLNVLEPAEYRKMFDR- 377
Query: 361 AGFGGF--AAAIQS---SKLW-------VMNVVPTLADKNTLGVIYERGLIGIYHDWCEA 408
F +A I + S +W VM VV L + + E+ E
Sbjct: 378 --LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV----EK-------QPKE- 423
Query: 409 FSTYPRTYDLIHAHGLFSLYKDKCNIE----DILLEMDRILR 446
T + ++ K K E +++ I +
Sbjct: 424 -----STISI---PSIYLELKVKLENEYALHRSIVDHYNIPK 457
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 8e-08
Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 40/219 (18%)
Query: 23 HCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFP 82
H A +GYV P R P +A + + +A + Y+
Sbjct: 25 HQFDMAKEGYVNLLPVQHKRSRDPGDSA--EMMQARRAFLDAGHYQPLRDAI-------- 74
Query: 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEA 138
+ QL + K V LD GCG + + +
Sbjct: 75 ------VAQLRERLDDKATAV---LDIGCGEGYYTHAFADALPEITTFGLDVSK-----V 120
Query: 139 QVQFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPG 197
++ A +R P V + + ++P++ + D E+ RV++PG
Sbjct: 121 AIKAAAKRY-PQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAE--------ELARVVKPG 171
Query: 198 GYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANL 236
G+ + + P E+ E++
Sbjct: 172 GWVITATPGPRHLMEL--KGLIYNEVHLHAPHAEQLEGF 208
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 12/124 (9%)
Query: 104 RTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI- 158
+D GCG + + V+ + + + + A G I +
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK-----MLARARAAGPDTGITYERADLD 99
Query: 159 KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP-PINWKTNYKAWQ 217
K+ +FD+A S + + + R V + L PGG++V S PI W
Sbjct: 100 KLHLPQDSFDLA-YSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWA 158
Query: 218 RPKE 221
E
Sbjct: 159 IDAE 162
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 30/153 (19%)
Query: 72 FRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAM 128
+ G D+ D++ +++ +++G LD GCG+ L + V +
Sbjct: 33 WEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTGI 90
Query: 129 SFAPRDSHEAQVQFALERGVPAVIGVLGTI--------KMPYASRAFDMAHC--SRCLIP 178
QV A R A G+ + +P+ +FD S +P
Sbjct: 91 -----SISRPQVNQANARATAA--GLANRVTFSYADAMDLPFEDASFDAVWALESLHHMP 143
Query: 179 WGANDGRYMIEVDRVLRPGGY-----WVLSGPP 206
+ GR + E+ RVLRPGG +VL P
Sbjct: 144 ---DRGRALREMARVLRPGGTVAIADFVLLAPV 173
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 83 QGADKYID-QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQ 139
G D Y + +L + + + LD GCG G YL + +V+ D
Sbjct: 29 AGNDIYGEARLIDAMAPRGAKI---LDAGCGQGRIGGYLSKQGHDVLGT-----DLDPIL 80
Query: 140 VQFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMI--EVDRVLRP 196
+ +A + P V+G + + FD+ + ++ + A DGR + R L
Sbjct: 81 IDYAKQD-FPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGA 139
Query: 197 GGYWVLS-GPPINW 209
G V+ G W
Sbjct: 140 DGRAVIGFGAGRGW 153
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 107 LDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI-KMPY 162
LD GCG L + + + +Q ERG + + G + +P+
Sbjct: 58 LDVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPF 112
Query: 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQR 218
+ F+ + W R + E+ RVL+ GY ++ K ++ R
Sbjct: 113 ENEQFEAIMA-INSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPR 167
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER 146
+L ++P N +T LD GCG Y V+ + D E + A +
Sbjct: 34 HELKKMLPDFNQ--KTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRK 86
Query: 147 GVPAVIG-VLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204
V+ I + A+++ S + + A+ +V L+ G ++ S
Sbjct: 87 TTSPVVCYEQKAIEDIAIEPDAYNVV-LSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145
Query: 205 P-PINWKTNYKAWQR 218
P+ + W
Sbjct: 146 EHPVFTADGRQDWYT 160
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 26/162 (16%)
Query: 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP 149
L +++ + V LD GCG L R + + D V A G
Sbjct: 45 LLAILGRQPERV---LDLGCGEGWLLRALADRGIEAVGV-----DGDRTLVDAARAAGAG 96
Query: 150 AVIGVL---GTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP- 205
V + +D+ + L+ + + + +L PGG V+
Sbjct: 97 EVHLASYAQLAEAKVPVGKDYDLICANFALLH--QDIIELLSAMRTLLVPGGALVIQTLH 154
Query: 206 PINW----------KTNYKAWQRPKEELQEEQRKIEEIANLL 237
P + + ++ + + + R + N L
Sbjct: 155 PWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL 196
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 7e-06
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 17/132 (12%)
Query: 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER 146
++ + +++ + G D G G + L ++ V A+ + Q A+
Sbjct: 23 VNAIINLLNLPKG--SVIADIGAGTGGYSVALANQGLFVYAV-----EPSIVMRQQAVVH 75
Query: 147 GVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGG----YWV 201
P V G + ++ D + ++ + E+ R++R G +
Sbjct: 76 --PQVEWFTGYAENLALPDKSVDGVISILAI-HHFSHLEKSFQEMQRIIRDGTIVLLTFD 132
Query: 202 LSGPPINWKTNY 213
+ W +Y
Sbjct: 133 IRLAQRIWLYDY 144
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 7e-06
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHE 137
F + + + I GT +D G G + L + ++ A+ F+ +E
Sbjct: 25 FAPIYPIIAENIINRFGITAGTC---IDIGSGPGALSIALAKQSDFSIRALDFSK-HMNE 80
Query: 138 AQVQFALERGVPAVIG-VLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLR 195
++ + + I V G + +P D+ SR + + + E+ R+L+
Sbjct: 81 IALKNIADANLNDRIQIVQGDVHNIPIEDNYADLI-VSRGSVFFWEDVATAFREIYRILK 139
Query: 196 PGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241
GG + G N + + + + + + E+
Sbjct: 140 SGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVER 185
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 8e-06
Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 11/131 (8%)
Query: 107 LDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMPY 162
LD G G ++ + + +A+ F+ E I G I K+P+
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAE-NFSRENNFKLNI-SKGDIRKLPF 85
Query: 163 ASRAFDMAHCSRCLIPWGANDGRYMI-EVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKE 221
+ + + ND + I E+ RVL+PGG ++ T + + + ++
Sbjct: 86 KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACIN----FLTTKDERYNKGEK 141
Query: 222 ELQEEQRKIEE 232
+ E ++E
Sbjct: 142 IGEGEFLQLER 152
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 28/192 (14%)
Query: 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER 146
+ + +P + L+ GCG + + +V A D A R
Sbjct: 34 LTKFLGELP-AGAKI---LELGCGAGYQAEAMLAAGFDVDAT-----DGSPELAAEASRR 84
Query: 147 -GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS- 203
G P + + A A+D CL+ ++ + + R L+PGG + S
Sbjct: 85 LGRPVRTMLFHQLD---AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY 141
Query: 204 --GPPINWKTNYKAWQRP-KEELQE--EQRKIEEIANLLCWEKKSEKGEIAVWQKKVNDE 258
G + + P +E L+ + + E K E+A +
Sbjct: 142 KSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFL------ 195
Query: 259 SCRARRDDSRAN 270
R+ + +
Sbjct: 196 HVSVRKPELEHH 207
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 28/183 (15%)
Query: 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFAL 144
+ ++ L K G V LD CGV + L V+ + D E ++ A
Sbjct: 26 ETLEPLLMKYMKKRGKV---LDLACGVGGFSFLLEDYGFEVVGV-----DISEDMIRKAR 77
Query: 145 ERGV---PAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGG- 198
E V ++G K+ + + FD ++ + + + EV RVL+P G
Sbjct: 78 EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGK 137
Query: 199 --------YWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAV 250
+L + K W QEE+ + E + E+ S + V
Sbjct: 138 FIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKS----EQDSFRVRFNV 193
Query: 251 WQK 253
W K
Sbjct: 194 WGK 196
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 22/145 (15%)
Query: 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER--G 147
+ +G + LD G G W +L S + + + V+ A +
Sbjct: 34 IEPWATGVDGVI---LDVGSGTGRWTGHLASLGHQIEGL-----EPATRLVELARQTHPS 85
Query: 148 VPAVIGVLGTIKMPYASRAFDMAHCSRCLI--PWGANDGRYMIEVDRVLRPGGYWVLS-- 203
V G + + + + + LI G ++ + + GG ++S
Sbjct: 86 VTFHHGTITD--LSDSPKRWAGLLAWYSLIHMGPGELP-DALVALRMAVEDGGGLLMSFF 142
Query: 204 ---GPPINWKTNYKAWQRPKEELQE 225
+ A++ P EL +
Sbjct: 143 SGPSLEPMYHPVATAYRWPLPELAQ 167
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%)
Query: 92 LASVIPIKNGTVRTALDTGCGVASWGAYL--WSRNVIAMSFAPRDSHEAQVQFALERGVP 149
L ++ K G + +D GCG + YL ++ + + D + ++ E+
Sbjct: 10 LPNIFEGKKGVI---VDYGCGNGFYCKYLLEFATKLYCI-----DINVIALKEVKEK-FD 60
Query: 150 AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209
+VI + ++P S D + + + EV R+L+ G ++ I+W
Sbjct: 61 SVITLSDPKEIPDNS--VDFILFANSF-HDMDDKQHVISEVKRILKDDGRVII----IDW 113
Query: 210 KTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGE 247
+ P +E+ + +N EK+
Sbjct: 114 RKENTGIGPPLSIRMDEKDYMGWFSN-FVVEKRFNPTP 150
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 24/172 (13%)
Query: 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSF 130
F Q P + ++ + + + D GCG +L + +
Sbjct: 20 FKLLKRQGPGSPEATRKAVSFINELTDDA--KIADIGCGTGGQTLFLADYVKGQITGI-- 75
Query: 131 APRDSHEAQVQFALER----GVPA-VIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDG 184
D ++ E V G+ G++ +P+ + D+ + +
Sbjct: 76 ---DLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI--YNIGFE 130
Query: 185 RYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANL 236
R M E + L+ GG+ +S +W T +RP E EI+ +
Sbjct: 131 RGMNEWSKYLKKGGFIAVSE--ASWFT----SERPAEIEDFWMDAYPEISVI 176
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 7/157 (4%)
Query: 73 RFPGGGTQFPQG-ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMS 129
+ T + QG A I L + G L GCG + S V+ +
Sbjct: 39 CWEEEITPWDQGRATPLIVHLVDTSSLPLGRA---LVPGCGGGHDVVAMASPERFVVGLD 95
Query: 130 FAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMI 188
+ +A + V + + FD+ +
Sbjct: 96 ISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAK 155
Query: 189 EVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQE 225
+ +L+P G + PI ++ +E
Sbjct: 156 SMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEE 192
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 12/139 (8%)
Query: 104 RTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMPY 162
+ L+ G G W L + + + A + R P V +P+
Sbjct: 38 ESLLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRA-PEATWVRAWGEALPF 91
Query: 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS--GPPINWKTNYKAWQRPK 220
+FD+ L + + R ++E RVLRPGG V+ W Y+
Sbjct: 92 PGESFDVVLLFTTL-EFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKG 150
Query: 221 EELQEEQR--KIEEIANLL 237
+ R E++ LL
Sbjct: 151 VLPWAQARFLAREDLKALL 169
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQV 140
A+ L G L+ GCG+ + L + ++ +P +A+
Sbjct: 22 AETLEKLLHHDTVYPPGA--KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAR- 78
Query: 141 QFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGY 199
+ + G+ V + I +P+ +FD ++ + + + +VL+PGG
Sbjct: 79 ENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV-CFVLEHLQSPEEALKSLKKVLKPGGT 137
Query: 200 WVL 202
+
Sbjct: 138 ITV 140
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 8e-05
Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 9/152 (5%)
Query: 96 IPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIG 153
+PIK + L G + V A+ +APR E +I
Sbjct: 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL---DACAERENIIP 126
Query: 154 VLGTIKMPYASRAF-DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS--GPPINWK 210
+LG P + + + L+ GGY +++ I+
Sbjct: 127 ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT 186
Query: 211 TNYKA-WQRPKEELQEEQRKIEEIANLLCWEK 241
+ K ++ KE L+ KI + ++ +EK
Sbjct: 187 KDPKEIFKEQKEILEAGGFKIVDEVDIEPFEK 218
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)
Query: 73 RFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSF 130
RF + + ++ +A+ IP L G +L S V A+
Sbjct: 5 RFSQSEYVYGTEPNDFLVSVANQIPQG-----KILCLAEGEGRNACFLASLGYEVTAVDQ 59
Query: 131 APRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEV 190
+ +A+ Q A E+GV + A++ C +P + + +V
Sbjct: 60 SSVGLAKAK-QLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPS-SLRQQLYPKV 117
Query: 191 DRVLRPGGYWVLSG 204
+ L+PGG ++L G
Sbjct: 118 YQGLKPGGVFILEG 131
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 29/149 (19%)
Query: 72 FRFPGGGTQFPQGA----DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---N 124
++ P + + + + +LA ++ LD G G +L + +
Sbjct: 50 YKEPVDQDEIREASLRTDEWLASELAMTGVLQRQA--KGLDLGAGYGGAARFLVRKFGVS 107
Query: 125 VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--------KMPYASRAFDM--AHCSR 174
+ ++ AP Q + E A G+ I ++P ++D + +
Sbjct: 108 IDCLNIAPV-----QNKRNEEYNNQA--GLADNITVKYGSFLEIPCEDNSYDFIWSQDAF 160
Query: 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLS 203
P + + E RVL+P G ++
Sbjct: 161 LHSP---DKLKVFQECARVLKPRGVMAIT 186
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 23/118 (19%)
Query: 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALE 145
D+ L D GCG + + + V A D A
Sbjct: 56 DRIARDLRQRPASLV-----VADFGCGDCRLASSIRNP-VHCFDLASLDPRVTVCDMA-- 107
Query: 146 RGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203
++P + D+A CL G N ++ E +RVL+PGG ++
Sbjct: 108 -------------QVPLEDESVDVAVF--CLSLMGTNIRDFLEEANRVLKPGGLLKVA 150
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV 148
L+ + + + D GCG L V + F + A + G+
Sbjct: 38 LSFIDNLTEKS--LIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFN-RNARQSGL 94
Query: 149 PAVI-GVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206
+ G++G++ +P+ + D+ + + R + E + L+ GGY +S
Sbjct: 95 QNRVTGIVGSMDDLPFRNEELDLIWSEGAI--YNIGFERGLNEWRKYLKKGGYLAVS--E 150
Query: 207 INWKTNYKAWQRPKEELQE 225
+W T+ E+ +
Sbjct: 151 CSWFTD-----ERPAEIND 164
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 14/155 (9%)
Query: 96 IPIKNGTVRTALDTGCGVASWGAYL-----WSRNVIAMSFAPRDSHEAQVQFALERGVPA 150
+P+K G L G + +++ + + FAPR + + R
Sbjct: 73 LPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL---TVVRDRRN 127
Query: 151 VIGVLGTIKMPYASR-AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS--GPPI 207
+ +LG + P R + + + LR GGY +++ I
Sbjct: 128 IFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI 187
Query: 208 NWKTNYKA-WQRPKEELQEEQRKIEEIANLLCWEK 241
+ T ++R + L + +I+++ +L +++
Sbjct: 188 DVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDR 222
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 17/161 (10%)
Query: 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL-WSRNVIAMSFAPRDSHEAQ 139
F Y+ +L +V + ++ G G G + + I + + E
Sbjct: 28 FLVHRFAYLSELQAVKCLLPE--GRGVEIGVGT---GRFAVPLKIKIGV-----EPSERM 77
Query: 140 VQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGY 199
+ A +RGV + G +P +FD A I + + R + E R+L+ GGY
Sbjct: 78 AEIARKRGVFVLKGTAE--NLPLKDESFDFA-LMVTTICFVDDPERALKEAYRILKKGGY 134
Query: 200 WVLSGP-PINWKTNYKAWQRPKEELQEEQRKI--EEIANLL 237
++ ++ + K + R EE+ +L+
Sbjct: 135 LIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLM 175
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 11/155 (7%)
Query: 58 EKAIQNWIQYEGNVFRFPGGGTQFP----QGADKYIDQLASVIPIKNGTVRTALDTGCGV 113
KA W Q V GG + K++ + P K GT LD G G+
Sbjct: 32 SKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCA-LDCGAGI 90
Query: 114 ASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMPYASRAFDM 169
L V + +A+ E G + ++D+
Sbjct: 91 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLG-EEGKRVRNYFCCGLQDFTPEPDSYDV 149
Query: 170 AHCSRCLIPWGANDG-RYMIEVDRVLRPGGYWVLS 203
+ ++ LRP G V+
Sbjct: 150 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK 184
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 15/135 (11%)
Query: 76 GGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAP 132
G G + ++ S I + + LD G G+ Y+ + + +
Sbjct: 32 GENYISSGGLEA-TKKILSDIELNENS--KVLDIGSGLGGGCMYINEKYGAHTHGI---- 84
Query: 133 RDSHEAQVQFALER--GVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGAND-GRYMI 188
D V A ER G +I I + FD+ + ++ + +
Sbjct: 85 -DICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQ 143
Query: 189 EVDRVLRPGGYWVLS 203
+ + L+P G +++
Sbjct: 144 KCYKWLKPTGTLLIT 158
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 20/131 (15%)
Query: 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQ 139
P + L+ ++ L+ GCG A + A D
Sbjct: 32 PDPELTFDLWLSRLLT----PQTRVLEAGCGHGPDAARFGPQAARWAAY-----DFSPEL 82
Query: 140 VQFALERGVPAVIGVLGTI-KMPYASRA-FDMAHCSRCLIPWGANDGRYMIEVDRVLRPG 197
++ A A + ++P A F + R ++ + + P
Sbjct: 83 LKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR-------GPTSVILRLPELAAPD 135
Query: 198 GYWVLSGPPIN 208
+++ GP +N
Sbjct: 136 AHFLYVGPRLN 146
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 9/125 (7%)
Query: 82 PQGADKYIDQLAS-VIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEA 138
P+ A + +AS V P L+ G G L +R IA+
Sbjct: 20 PEVAGQIATAMASAVHPKGEE--PVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVF 77
Query: 139 QVQFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPG 197
+ + + V V +P + + + + E RVL+PG
Sbjct: 78 RQK--IAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW-HLVPDWPKVLAEAIRVLKPG 134
Query: 198 GYWVL 202
G +
Sbjct: 135 GALLE 139
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 5e-04
Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 19/180 (10%)
Query: 58 EKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWG 117
KA++ W V GG + + +P ALD G G+
Sbjct: 51 GKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGT--SRALDCGAGIGRIT 108
Query: 118 AYLWSR---NVIAMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KMPYASRAFDMAH 171
L ++ + + + ++ A G+P +L ++ +D+
Sbjct: 109 KNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV 163
Query: 172 CSRCLIPWGAND-GRYMIEVDRVLRPGGY-----WVLSGPPINWKTNYKAWQRPKEELQE 225
I D ++ + L P GY +G + R +
Sbjct: 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR 223
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 11/120 (9%)
Query: 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQ 139
+ + LD G G A +S I + A
Sbjct: 6 HHHSL--GLMIKTAECRAE--HRVLDIGAGAGHT-ALAFSPYVQECIGVDATKEMVEVAS 60
Query: 140 VQFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGG 198
FA E+GV V GT +P+ +FD+ C + ++ + + EV RVL+ G
Sbjct: 61 -SFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHF-SDVRKAVREVARVLKQDG 118
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 506 | |||
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.62 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.6 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.56 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.55 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.54 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.54 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.53 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.53 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.53 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.53 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.53 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.53 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.53 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.52 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.52 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.52 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.52 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.52 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.51 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.51 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.51 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.5 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.5 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.5 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.5 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.5 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.49 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.49 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.49 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.49 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.49 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.49 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.49 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.49 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.49 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.49 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.48 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.48 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.48 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.48 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.48 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.47 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.47 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.47 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.47 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.47 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.46 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.46 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.46 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.46 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.46 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.46 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.46 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.46 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.46 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.46 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.46 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.45 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.45 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.45 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.45 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.45 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.45 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.45 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.44 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.44 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.44 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.44 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.43 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.43 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.43 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.43 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.43 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.42 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.42 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.42 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.42 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.42 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.42 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.42 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.41 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.41 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.41 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.41 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.41 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.41 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.41 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.41 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.41 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.41 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.4 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.4 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.4 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.4 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.4 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.4 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.4 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.39 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.39 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.39 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.39 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.39 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.39 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.39 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.39 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.39 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.38 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.38 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.38 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.38 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.38 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.38 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.38 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.38 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.38 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.38 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.37 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.37 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.37 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.37 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.37 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.37 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.37 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.37 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.37 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.37 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.36 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.36 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.36 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.35 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.35 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.35 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.35 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.35 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.35 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.34 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.34 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.34 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.34 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.34 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.34 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.33 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.33 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.33 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.33 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.33 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.33 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.32 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.32 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.32 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.32 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.32 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.32 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.32 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.32 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.31 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.31 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.31 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.31 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.31 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.31 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.31 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.31 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.3 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.3 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.3 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.3 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.3 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.3 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.3 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.3 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.29 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.29 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.29 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.29 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.29 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.28 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.28 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.28 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.28 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.28 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.28 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.28 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.28 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.27 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.27 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.27 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.26 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.26 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.26 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.26 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.26 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.26 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.26 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.26 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.26 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.26 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.26 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.25 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.25 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.25 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.25 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.24 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.24 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.24 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.24 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.23 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.23 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.23 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.23 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.23 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.23 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.23 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.22 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.22 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.22 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.22 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.22 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.22 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.2 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.2 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.2 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.2 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.2 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.19 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.19 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.19 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.19 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.19 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.18 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.18 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.18 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.18 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.17 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.17 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.17 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.17 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.17 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.17 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.17 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.17 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.17 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.16 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.16 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.16 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.16 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.16 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.16 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.15 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.15 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.14 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.14 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.14 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.14 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.14 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.14 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.14 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.14 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.13 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.13 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.13 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.12 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.12 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.12 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.12 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.12 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.11 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.11 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.11 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.11 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.11 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.11 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.11 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.11 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.11 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.1 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.1 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.1 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.1 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.1 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.1 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.1 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.1 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.09 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.09 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.08 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.08 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.08 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.08 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.08 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.08 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.08 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.08 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.07 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.07 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.07 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.07 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.07 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.06 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.06 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.06 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.06 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.06 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.05 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.05 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.05 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.05 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.05 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.05 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.05 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.05 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.05 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.04 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.04 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.04 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.04 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.04 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.04 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.03 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.03 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.03 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.03 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.03 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.02 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.01 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.01 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.01 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.0 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.0 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.0 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.0 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.0 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.0 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.0 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.99 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.99 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.99 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.99 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.99 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.99 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.98 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.98 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.98 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.97 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.97 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.97 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.97 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.97 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.96 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.96 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.96 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.96 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.96 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.96 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.95 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.95 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.95 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.95 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.95 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.94 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.94 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.94 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.93 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.93 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.93 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.93 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.93 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.92 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.92 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.92 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.92 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.92 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.92 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.91 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.91 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.91 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.9 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.9 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.9 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.9 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.9 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.9 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.89 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.89 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.89 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.89 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.89 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.88 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.88 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.88 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.87 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.87 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.87 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.87 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.85 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.85 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.85 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.84 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.83 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.82 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.82 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.82 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.82 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.82 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.82 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.82 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.82 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.82 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.81 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.81 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.8 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.8 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.8 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.8 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.79 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.79 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.79 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.79 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.79 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.79 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.78 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.78 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.78 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.78 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.77 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.77 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.77 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.77 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.76 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.75 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.74 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.74 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.74 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.74 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.74 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.74 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.73 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.73 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.73 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.72 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.72 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.71 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.71 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.71 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.71 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.71 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.69 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.69 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.69 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.69 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.69 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.69 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.68 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.67 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.67 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.67 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.67 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.67 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.67 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.66 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.66 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.66 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.66 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.65 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.65 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.64 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.64 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.64 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.64 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.63 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.63 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.62 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.62 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.62 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.61 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.61 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.6 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.6 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.6 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.59 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.59 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.58 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.58 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.54 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.54 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.53 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.52 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.51 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.49 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.47 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.45 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.45 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.44 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.42 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.39 |
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=140.44 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=104.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC---CCCC-CceeEEEEccccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF---STYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~---~~~p-~s~Dlv~~~~~~~ 426 (506)
....+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.+++.......-.+.+ +..+ .+||+|++..+|.
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 334789999999999999999885 48999999999999999985433332222333 3344 5699999988887
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeChh--------------------------------hHHHHHHHHhcCCceE
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--------------------------------EIIKVKKIVGGMRWDT 474 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--------------------------------~~~~~~~~~~~~~w~~ 474 (506)
..++..+|.++.|+|||||+++|.+... ..+++.+++++.+|++
T Consensus 128 ----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 203 (227)
T 3e8s_A 128 ----HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRL 203 (227)
T ss_dssp ----SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEE
T ss_pred ----hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeE
Confidence 4577899999999999999999976411 4688999999999997
Q ss_pred EEeecCCCC---CCCeEEEEEEec
Q 010592 475 KMVDHEDGP---LVPEKILVAVKQ 495 (506)
Q Consensus 475 ~~~~~~~~~---~~~~~~l~~~k~ 495 (506)
..+....-+ .....+++++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 204 VSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEEECCCCTTCSSCSCEEEEEEEC
T ss_pred EEEecCCCCCCCCceeEEEEeecC
Confidence 755432111 123678888874
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=140.76 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=106.2
Q ss_pred HHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--Ccee
Q 010592 340 AYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYD 417 (506)
Q Consensus 340 ~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--~s~D 417 (506)
.|..++..+......+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.. ..+...+.++..++ ++||
T Consensus 33 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~d~~~~~~~~~fD 108 (220)
T 3hnr_A 33 HYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVPTSID 108 (220)
T ss_dssp THHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSC-TTCCEESCCSSSCCCCSCCS
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCC-CceEEEeCChhhcCCCCCeE
Confidence 34444443333356689999999999999999875 589999999999999998742 12222234444433 8999
Q ss_pred EEEEccccccccCcCCHHH--HHHHHhhhccCCcEEEEEeChh-------------------------------hHHHHH
Q 010592 418 LIHAHGLFSLYKDKCNIED--ILLEMDRILRPEGAIIIRDEVD-------------------------------EIIKVK 464 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~--~l~e~~RvLrPgG~~ii~d~~~-------------------------------~~~~~~ 464 (506)
+|++..+|.+.. +... +|.++.|+|||||.++|.+... ..++++
T Consensus 109 ~v~~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (220)
T 3hnr_A 109 TIVSTYAFHHLT---DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQ 185 (220)
T ss_dssp EEEEESCGGGSC---HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred EEEECcchhcCC---hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence 999999998554 4444 9999999999999999986320 237888
Q ss_pred HHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 465 KIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 465 ~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+++++.+|++...... .-..++.++|+
T Consensus 186 ~~l~~aGf~v~~~~~~----~~~w~~~~~~~ 212 (220)
T 3hnr_A 186 TIFENNGFHVTFTRLN----HFVWVMEATKQ 212 (220)
T ss_dssp HHHHHTTEEEEEEECS----SSEEEEEEEEC
T ss_pred HHHHHCCCEEEEeecc----ceEEEEeehhh
Confidence 9999999997765554 24566666665
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=134.58 Aligned_cols=137 Identities=11% Similarity=0.136 Sum_probs=105.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.. +.....-.+.++..+++||+|++..+|.+.. .
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~ 117 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG-P 117 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC-T
T ss_pred CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC-H
Confidence 4569999999999999999975 489999999999999998742 2222211233443448999999999998664 4
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.++..+|.++.|+|||||+++|.+... ..+++++++.+.+|++.......+ .+...|...|+
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~~ 195 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEAS 195 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhhh
Confidence 578999999999999999999976321 368899999999999887665544 35566655553
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=140.51 Aligned_cols=136 Identities=8% Similarity=0.085 Sum_probs=105.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEcc-cccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHG-LFSLYK 429 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~~~-~~~~~~ 429 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++.. .+...+.++..+ +++||+|+|.. +|.+..
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNP--DAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCT--TSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC--CCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 4689999999999999999875 479999999999999998742 112223444333 58999999997 998776
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEEeC-----------------------------------------------------
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIRDE----------------------------------------------------- 456 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~----------------------------------------------------- 456 (506)
+..++..+|.++.|+|||||+|+|.+.
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH 205 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence 556778899999999999999999420
Q ss_pred --------hhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEecc
Q 010592 457 --------VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 457 --------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
.-..+++++++++.++++..+.... ....+++|+|+-
T Consensus 206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~---~~~~~~va~K~a 250 (263)
T 3pfg_A 206 HEESHRITLFTREQYERAFTAAGLSVEFMPGGP---SGRGLFTGLPGA 250 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTT---TSSCEEEEEECC
T ss_pred EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCC---CCceeEEEecCC
Confidence 0026899999999999977654332 345688999973
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=142.84 Aligned_cols=103 Identities=7% Similarity=0.083 Sum_probs=81.8
Q ss_pred CceEEeecCcccHHHHHHHhCC-CeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~-~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..|++.. ....+|+++|.|+.||+.|+++ +....+...+.++..+| ..||+|.++.+++
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 4579999999999999998742 2236899999999999999886 33334555667777777 8899999988887
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+.. ..+...+|.|++|+|||||.|+|.|.
T Consensus 151 ~~~-~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 151 FLE-PSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecC-chhHhHHHHHHHHHcCCCcEEEEEec
Confidence 553 22445799999999999999999763
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-15 Score=145.23 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=78.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~ 432 (506)
..+|||+|||+|.++..|++.+ .+|+++|.|+.|++.|.++.-+...+.-.++++..+++||+|.|..+|+ +.
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h----~~ 112 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMH----WF 112 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCT----TC
T ss_pred CCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehh----Hh
Confidence 3579999999999999999976 4899999999999988766433333333456665559999999988884 45
Q ss_pred CHHHHHHHHhhhccCCcEEEEEe
Q 010592 433 NIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.+.++.|+.|||||||.|++.+
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEEEE
Confidence 68899999999999999998853
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-14 Score=136.80 Aligned_cols=159 Identities=20% Similarity=0.345 Sum_probs=115.3
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChhhHHHHHHHH
Q 010592 13 RHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQL 92 (506)
Q Consensus 13 ~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l 92 (506)
.+|+. .|+++.+..||...++..... ...+.+...+..++..++. ...+..-...+.+.+
T Consensus 19 ~~C~~----~~~~~~~~~Gy~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 78 (269)
T 1p91_A 19 YICPQ----RHQFDMAKEGYVNLLPVQHKR-----SRDPGDSAEMMQARRAFLD-----------AGHYQPLRDAIVAQL 78 (269)
T ss_dssp EECTT----CCEEEBCTTSCEECSCSSSSC-----SCCCSSSHHHHHHHHHHHT-----------TTTTHHHHHHHHHHH
T ss_pred EECCC----CCcCCcCCCEEEEeecccccC-----CCCCCCCHHHHHHHHHHHh-----------CCCcHHHHHHHHHHH
Confidence 47875 688999999999988765543 2334556667777666665 122333334454555
Q ss_pred HhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 010592 93 ASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 93 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfD 168 (506)
...++ .++.+|||||||+|.++..+++. .++++|+++ .+++.+.++...+.+.+.|...+|+++++||
T Consensus 79 ~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD 150 (269)
T 1p91_A 79 RERLD---DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMD 150 (269)
T ss_dssp HHHSC---TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEE
T ss_pred HHhcC---CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCH-----HHHHHHHHhCCCcEEEEcchhhCCCCCCcee
Confidence 55442 24558999999999999999876 377787765 4455666666667888889888999899999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+|+++.+. .+++++.++|||||.+++.++..
T Consensus 151 ~v~~~~~~--------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 151 AIIRIYAP--------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp EEEEESCC--------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEeCCh--------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 99997652 24899999999999999987655
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=128.48 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=101.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccC
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
....+|||+|||+|.++..|++.+ .+|+++|.++.+++.+.++. ..+...+.+++..+++||+|++..++.+.
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~--~~v~~~~~d~~~~~~~~D~v~~~~~l~~~-- 88 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF--DSVITLSDPKEIPDNSVDFILFANSFHDM-- 88 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC--TTSEEESSGGGSCTTCEEEEEEESCSTTC--
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC--CCcEEEeCCCCCCCCceEEEEEccchhcc--
Confidence 445689999999999999999875 39999999999999999872 22222334444445899999999999855
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeChh-------------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEecc
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDEVD-------------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
.++..+|.++.|+|||||+++|.+... ..++++++++ +|++....... ...+.+++.|+=
T Consensus 89 -~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~---~~~~~l~~~~~~ 161 (170)
T 3i9f_A 89 -DDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPT---PYHFGLVLKRKT 161 (170)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSS---TTEEEEEEEECC
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCC---CceEEEEEecCC
Confidence 478899999999999999999975321 3577888888 99866543331 256778777754
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=138.72 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=87.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~s 166 (506)
+.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++..+... +.+.+. .+.+.+.|...+|+++++
T Consensus 27 ~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~~v~~~~~d~~~l~~~~~~ 103 (260)
T 1vl5_A 27 AKLMQIAALK--GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF-IEGNGHQQVEYVQGDAEQMPFTDER 103 (260)
T ss_dssp HHHHHHHTCC--SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhCCC--CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHhcCCCceEEEEecHHhCCCCCCC
Confidence 3444555333 4559999999999999999887 488999988777554433 333343 478888999999999999
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
||+|+|+.+++|+ +++..+|.++.|+|||||+|++..
T Consensus 104 fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 104 FHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp EEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEEhhhhHhc-CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999999999775 678999999999999999999974
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=135.14 Aligned_cols=145 Identities=14% Similarity=0.010 Sum_probs=106.2
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCC---CCCce
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFST---YPRTY 416 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~---~p~s~ 416 (506)
++..+......+|||+|||+|.++..|++......+|+++|.++.|++.+.++. +. .+...+.++.. .+++|
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~f 107 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTV 107 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCE
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCe
Confidence 333344445668999999999999999875312258999999999999888762 21 12222333333 33899
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-------------hHHHHHHHHhcCCceEEEeecCCCC
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-------------EIIKVKKIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~ 483 (506)
|+|++..+|.+. .++..+|.++.|+|||||.++|.+... ..+++.+++++.+|++.......
T Consensus 108 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-- 182 (219)
T 3dh0_A 108 DFIFMAFTFHEL---SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG-- 182 (219)
T ss_dssp EEEEEESCGGGC---SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET--
T ss_pred eEEEeehhhhhc---CCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC--
Confidence 999999999855 477899999999999999999976321 46889999999999966443321
Q ss_pred CCCeEEEEEEec
Q 010592 484 LVPEKILVAVKQ 495 (506)
Q Consensus 484 ~~~~~~l~~~k~ 495 (506)
....+++++|+
T Consensus 183 -~~~~~~~~~k~ 193 (219)
T 3dh0_A 183 -KYCFGVYAMIV 193 (219)
T ss_dssp -TTEEEEEEECC
T ss_pred -CceEEEEEEec
Confidence 25778888885
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=140.55 Aligned_cols=108 Identities=23% Similarity=0.276 Sum_probs=86.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
..+++.|.+..+ ...+|||||||+|.++..|+++ .|+++|+|+.|+ +.|.+ ...+.+.++++..+|++
T Consensus 27 ~~l~~~l~~~~~----~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml-----~~a~~-~~~v~~~~~~~e~~~~~ 96 (257)
T 4hg2_A 27 RALFRWLGEVAP----ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQI-----RQALR-HPRVTYAVAPAEDTGLP 96 (257)
T ss_dssp HHHHHHHHHHSS----CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHH-----HTCCC-CTTEEEEECCTTCCCCC
T ss_pred HHHHHHHHHhcC----CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhh-----hhhhh-cCCceeehhhhhhhccc
Confidence 445566666653 2348999999999999999987 478888876544 44433 35688899999999999
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++||+|+|..++ ||. ++..+++|+.|+|||||.|++...
T Consensus 97 ~~sfD~v~~~~~~-h~~-~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 97 PASVDVAIAAQAM-HWF-DLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp SSCEEEEEECSCC-TTC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcccEEEEeeeh-hHh-hHHHHHHHHHHHcCCCCEEEEEEC
Confidence 9999999999998 544 478899999999999999998753
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=135.86 Aligned_cols=132 Identities=13% Similarity=0.155 Sum_probs=101.3
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccc---ccCCCCCCceeE
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC---EAFSTYPRTYDL 418 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~---~~~~~~p~s~Dl 418 (506)
..+...+......+|||+|||+|.++..|++.+. .+|+++|.++.|++.|.++.....+...+ +.++..+++||+
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3444555555667899999999999999998763 28999999999999999874211122222 344433489999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------------------------------------
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------------------------------- 458 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------------------------------- 458 (506)
|+|..+|.+. .++..+|.++.|+|||||.++|.....
T Consensus 112 v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (253)
T 3g5l_A 112 VLSSLALHYI---ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGED 188 (253)
T ss_dssp EEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEE
T ss_pred EEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecccc
Confidence 9999999855 578999999999999999999963211
Q ss_pred ------hHHHHHHHHhcCCceEEEee
Q 010592 459 ------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 459 ------~~~~~~~~~~~~~w~~~~~~ 478 (506)
..+++.+++++.++++..+.
T Consensus 189 ~~~~~~t~~~~~~~l~~aGF~~~~~~ 214 (253)
T 3g5l_A 189 VQKYHRTVTTYIQTLLKNGFQINSVI 214 (253)
T ss_dssp EEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred CccEecCHHHHHHHHHHcCCeeeeee
Confidence 46889999999999977544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=141.48 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..|+++ .++++|+|+.|+..+..+..... ..++.+.++|+..+|++ .||+|+++.
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~ 147 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 147 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeee
Confidence 4569999999999999999875 37899999887765554433322 23578888899888874 599999999
Q ss_pred cccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 175 CLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++++.+.. ..+|++++|+|||||.|+++.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 987754322 578999999999999999975
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=134.76 Aligned_cols=155 Identities=8% Similarity=0.080 Sum_probs=111.1
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC
Q 010592 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST 411 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~ 411 (506)
..|.........++.... .+..+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++.. .+...+.++..
T Consensus 21 ~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~--~~~~~~~d~~~ 94 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRLP--DATLHQGDMRD 94 (239)
T ss_dssp CCHHHHHHHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHCT--TCEEEECCTTT
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhCC--CCEEEECCHHH
Confidence 456655555544444222 345689999999999999998864 289999999999999998741 11222334433
Q ss_pred C--CCceeEEEEc-cccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-------------------------------
Q 010592 412 Y--PRTYDLIHAH-GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------------- 457 (506)
Q Consensus 412 ~--p~s~Dlv~~~-~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------------- 457 (506)
+ +++||+|+|. .+|++..+..++..+|.++.|+|||||.++|.+..
T Consensus 95 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (239)
T 3bxo_A 95 FRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVRE 174 (239)
T ss_dssp CCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecC
Confidence 3 5899999964 48887655556788999999999999999996310
Q ss_pred ------------------------------hhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 458 ------------------------------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 458 ------------------------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
-..++++.++++.++++....... ....+++|+|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~---~~~~~~va~K~ 239 (239)
T 3bxo_A 175 GNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGP---SGRGLFVGVPA 239 (239)
T ss_dssp TTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTT---TSSCEEEEEEC
T ss_pred CCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCC---CCceEEEEecC
Confidence 024889999999999866554332 34678899885
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-14 Score=133.10 Aligned_cols=141 Identities=12% Similarity=0.091 Sum_probs=104.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCCC--CCceeEEEEcc-ccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFSTY--PRTYDLIHAHG-LFS 426 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~~--p~s~Dlv~~~~-~~~ 426 (506)
+..+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++.. .+ .+...+.++..+ +++||+|++.. +|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCcccc
Confidence 45689999999999999999875 479999999999999887621 00 112223333333 38999999998 999
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeCh-------------------------------------------------
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------------------------------- 457 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------------------------------- 457 (506)
+.....++..+|.++.|+|||||.++|.-..
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 7754457789999999999999999983110
Q ss_pred ---------hhHHHHHHHHhcCCceEEEeecC-----CCCCCCeEEEEEEec
Q 010592 458 ---------DEIIKVKKIVGGMRWDTKMVDHE-----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 458 ---------~~~~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~l~~~k~ 495 (506)
-..+++++++++.++++...... .+...+..+++|+|+
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 05688999999999997754322 122346789999985
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=133.39 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=94.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-CccceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ ++.....+ .+.++ .+++||+|+|..+|.+.. .
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~d-~~~~~-~~~~fD~v~~~~~l~~~~-~ 117 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRLGRPVRTML-FHQLD-AIDAYDAVWAHACLLHVP-R 117 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHTSCCEECC-GGGCC-CCSCEEEEEECSCGGGSC-H
T ss_pred CCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhcCCceEEee-eccCC-CCCcEEEEEecCchhhcC-H
Confidence 4589999999999999999875 4899999999999999987 33222211 23444 459999999999998654 3
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEeCh---------------hhHHHHHHHHhcCC-ceEEEee
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRDEV---------------DEIIKVKKIVGGMR-WDTKMVD 478 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~~---------------~~~~~~~~~~~~~~-w~~~~~~ 478 (506)
.++..+|.++.|+|||||+++|.... -..+++++++++.+ |++....
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 36778999999999999999996432 15688999999999 9876443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=130.89 Aligned_cols=124 Identities=10% Similarity=0.161 Sum_probs=95.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEcccccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~~~~~ 429 (506)
...+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.+++.. .+...+.++..+ +++||+|++..+|++..
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLD-NVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGGCCT-TEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhcCCC-CeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 34589999999999999998874 4899999999999999987642 222233444332 39999999999998654
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------------------hhHHHHHHHHhcCCceEE
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIRDEV----------------------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------------------~~~~~~~~~~~~~~w~~~ 475 (506)
+ ..+..+|.++.|+|||||.++|.+.. ...+++.+++++.+|++.
T Consensus 122 ~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 200 (218)
T 3ou2_A 122 D-DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCS 200 (218)
T ss_dssp H-HHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred H-HHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEE
Confidence 2 22478999999999999999997531 134789999999999977
Q ss_pred EeecC
Q 010592 476 MVDHE 480 (506)
Q Consensus 476 ~~~~~ 480 (506)
..+..
T Consensus 201 ~~~~~ 205 (218)
T 3ou2_A 201 VDEVH 205 (218)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 65544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-14 Score=136.41 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=94.2
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCce
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTY 416 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~ 416 (506)
++..+......+|||+|||+|.++..|++.+ .+|+++|.|+.|++.|.++ |+. .+...+.+ ++..+++|
T Consensus 29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCE
T ss_pred HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCCE
Confidence 3333444456789999999999999999875 3899999999999998876 321 12222233 44334899
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-------------------------hHHHHHHHHhcCC
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-------------------------EIIKVKKIVGGMR 471 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------------------~~~~~~~~~~~~~ 471 (506)
|+|++..++.++ .++..+|.|+.|+|||||+|+|.+... ..+++.+++.+.+
T Consensus 105 D~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 181 (260)
T 1vl5_A 105 HIVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAG 181 (260)
T ss_dssp EEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHT
T ss_pred EEEEEhhhhHhc---CCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCC
Confidence 999999999854 478899999999999999999975311 2356777888888
Q ss_pred ceEEEe
Q 010592 472 WDTKMV 477 (506)
Q Consensus 472 w~~~~~ 477 (506)
|++...
T Consensus 182 f~~~~~ 187 (260)
T 1vl5_A 182 FELEEL 187 (260)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 885543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-14 Score=132.30 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=98.5
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC---CCCceeEEEEcccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST---YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~---~p~s~Dlv~~~~~~~~ 427 (506)
+|||+|||+|.++..|++. ...+|+++|.++.|++.|.++ ++...+...+.++.. .+++||+|++..++.+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 8999999999999999886 247999999999999998887 332222223344433 3489999999999985
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------------------------hhHHHHHHHHhcCCceEEEe
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
. .++..+|.++.|+|||||.++|.+.. ...+++++++++.+++...+
T Consensus 124 ~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 200 (219)
T 3dlc_A 124 W---EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200 (219)
T ss_dssp C---SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred c---cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence 4 57889999999999999999997532 12377888999999975443
Q ss_pred ecCCCCCCCeEEEEEEec
Q 010592 478 DHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 478 ~~~~~~~~~~~~l~~~k~ 495 (506)
...+ ...+++.+|+
T Consensus 201 ~~~~----~~~~~~~~k~ 214 (219)
T 3dlc_A 201 ILGD----EGFWIIISKT 214 (219)
T ss_dssp EEET----TEEEEEEBCC
T ss_pred EecC----CceEEEEecc
Confidence 3321 3456666654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=135.46 Aligned_cols=124 Identities=9% Similarity=0.100 Sum_probs=92.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--------------cceeccccccCCCCC---
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--------------IGIYHDWCEAFSTYP--- 413 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--------------~~~~~~~~~~~~~~p--- 413 (506)
...+|||+|||+|.++..|++.+ .+|+++|.|+.|++.|+++. . ...+...+.++..++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 35689999999999999999875 48999999999999998872 1 123334456666555
Q ss_pred -CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEE-EE-eCh----------hhHHHHHHHHhcCCceEEEeecC
Q 010592 414 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAII-IR-DEV----------DEIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 414 -~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~i-i~-d~~----------~~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
++||+|.+..+|.+.. ..+...++.||.|+|||||+++ +. +.. -..+++++++.. +|++......
T Consensus 99 ~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 6899999988887654 3345679999999999999833 32 210 135789999888 9987655443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=131.49 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=84.3
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
+.+|||||||+|.++..|++. .++++|+++. +++.++++...+.+.+.|...+++++++||+|++..+++|+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATR-----LVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHH-----HHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHH-----HHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC
Confidence 347999999999999999987 4788887654 445566666678888899999998899999999999998875
Q ss_pred C-ChHHHHHHHHHhcCCCeEEEEEcCCCC
Q 010592 181 A-NDGRYMIEVDRVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 181 ~-~~~~~l~e~~rvLkPGG~li~~~p~~~ 208 (506)
. +...+++++.++|||||+++++.+...
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 3 568999999999999999999875443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-14 Score=136.26 Aligned_cols=123 Identities=22% Similarity=0.435 Sum_probs=97.4
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEE
Q 010592 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIG 153 (506)
Q Consensus 79 ~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~ 153 (506)
..+......+.+.+.+.++.. ++.+|||||||+|.++..+++. .++++|+++.++..+... +...+. .+.+.
T Consensus 40 ~~~~~~~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~ 116 (273)
T 3bus_A 40 VSVDDATDRLTDEMIALLDVR--SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR-ATAAGLANRVTFS 116 (273)
T ss_dssp CCHHHHHHHHHHHHHHHSCCC--TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEE
T ss_pred cCHHHHHHHHHHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHH-HHhcCCCcceEEE
Confidence 345555677778888888654 3459999999999999999874 488999988766544433 333343 47888
Q ss_pred EeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 154 VLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 154 ~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..|...+|+++++||+|++..+++|+ +++..+++++.++|||||++++..+
T Consensus 117 ~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 117 YADAMDLPFEDASFDAVWALESLHHM-PDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp ECCTTSCCSCTTCEEEEEEESCTTTS-SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ECccccCCCCCCCccEEEEechhhhC-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 88999999999999999999999775 6679999999999999999999763
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=131.75 Aligned_cols=143 Identities=14% Similarity=0.061 Sum_probs=102.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC--CceeEEEEcccccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP--RTYDLIHAHGLFSL 427 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p--~s~Dlv~~~~~~~~ 427 (506)
.+..+|||+|||+|.++..|++.. ...+|+++|.++.|++.|.++.. .+.+...+.++..++ ++||+|++..+|++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH 121 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence 345789999999999999998852 12589999999999999998731 123333445555544 89999999999986
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------------------------------hhHHHHHHH
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------------------------DEIIKVKKI 466 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------------------------~~~~~~~~~ 466 (506)
.. ......+|.++.|+|||||+++|.|.. ...+++.++
T Consensus 122 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 122 LE-DEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp SC-HHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 53 112336999999999999999997621 023567779
Q ss_pred HhcCCceEEEeecCCCCCCCeEEEEEEecccc
Q 010592 467 VGGMRWDTKMVDHEDGPLVPEKILVAVKQYWV 498 (506)
Q Consensus 467 ~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~w~ 498 (506)
+++.+++........ -...++...|+=|.
T Consensus 201 l~~aGF~~v~~~~~~---~~~~~~~~~~~~~~ 229 (234)
T 3dtn_A 201 LKEAGFRDVSCIYKY---YQFAVMFGRKTEGH 229 (234)
T ss_dssp HHHTTCEEEEEEEEE---TTEEEEEEECC---
T ss_pred HHHcCCCceeeeeee---cceeEEEEEecccc
Confidence 999999966433332 24668888877664
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.5e-14 Score=134.93 Aligned_cols=126 Identities=14% Similarity=0.159 Sum_probs=95.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-ceeccccccC---CCCCCceeEEEEcc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-GIYHDWCEAF---STYPRTYDLIHAHG 423 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~~~~~~~~~~---~~~p~s~Dlv~~~~ 423 (506)
+...+..+|||+|||+|.++..|++.. ..+|+++|.++.|++.|.++... ..+...+.++ +..+++||+|++..
T Consensus 51 ~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 128 (266)
T 3ujc_A 51 IELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRD 128 (266)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEES
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHH
Confidence 344456689999999999999998852 25899999999999999988521 1222223333 33348999999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEEE
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~~ 476 (506)
+|+|.. ..++..+|.++.|+|||||+++|.+.. ...+.+.+++.+.++++..
T Consensus 129 ~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 129 AILALS-LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 998653 246788999999999999999997621 1357788899999998654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-14 Score=140.52 Aligned_cols=142 Identities=14% Similarity=0.098 Sum_probs=103.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCC--CCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|.++..|+.......+|+++|.++.|++.|.++. +...+...+.++..+ +++||+|++..++
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 197 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLN 197 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSSG
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECChh
Confidence 3567999999999999998522222368999999999999998763 221122333444333 3999999999988
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeCh---------------------------------------hhHHHHHHH
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------------------------DEIIKVKKI 466 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---------------------------------------~~~~~~~~~ 466 (506)
.+..+......+|.++.|+|||||+++|.+.. ...+++.++
T Consensus 198 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (305)
T 3ocj_A 198 IYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQ 277 (305)
T ss_dssp GGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHH
Confidence 86654433445899999999999999998721 136789999
Q ss_pred HhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 467 VGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 467 ~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+++.+|++...... .......++++|+
T Consensus 278 l~~aGF~~v~~~~~--~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 278 LEEAGFTDLRFEDD--RARLFPTVIARKP 304 (305)
T ss_dssp HHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred HHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence 99999997655432 2235668888885
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=138.82 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=100.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----cc---------------------------
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----LI--------------------------- 399 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----~~--------------------------- 399 (506)
+..+|||+|||+|.++..++..+ ..+|+++|.|+.|++.|.++. .+
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 45689999999999887777665 247999999999999887631 00
Q ss_pred -----ceeccccccCCC---CCCceeEEEEccccccc-cCcCCHHHHHHHHhhhccCCcEEEEEeChh------------
Q 010592 400 -----GIYHDWCEAFST---YPRTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD------------ 458 (506)
Q Consensus 400 -----~~~~~~~~~~~~---~p~s~Dlv~~~~~~~~~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------ 458 (506)
-...+..+..+. ...+||+|.|+.+|++. .+..++..+|.+|.|+|||||+|++++...
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 001111111111 13799999999999864 344567789999999999999999986221
Q ss_pred ----hHHHHHHHHhcCCceEEEeecCC-------CCCCCeEEEEEEec
Q 010592 459 ----EIIKVKKIVGGMRWDTKMVDHED-------GPLVPEKILVAVKQ 495 (506)
Q Consensus 459 ----~~~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~l~~~k~ 495 (506)
..+++.+++.+.++++....... .......+++|+|.
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 46789999999999876443211 01125678899995
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-14 Score=154.62 Aligned_cols=125 Identities=12% Similarity=0.105 Sum_probs=83.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccC----CCCCCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAF----STYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~----~~~p~s~Dlv~~~~ 423 (506)
..+|||+|||||+|+.+++..+. ..|+++|.|+.+++.|.+. |+. ..+...+.+. +...++||+|.++.
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 45799999999999999988653 4699999999999988875 332 1222223332 22347999999854
Q ss_pred c-ccccc-------CcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeec
Q 010592 424 L-FSLYK-------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 424 ~-~~~~~-------~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
- |.... ...+...++.++.++|||||+|++.........-.+.+.+.+++...+..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i~~ 681 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQ 681 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEECTT
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeeeee
Confidence 2 22100 11134568999999999999999977653222224556667777554433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=134.90 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=99.6
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCce
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTY 416 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~ 416 (506)
..++..+...+..+|||+|||+|.++..|++ .+ .+|+++|.+++|++.|.++ |+...+...+.++..+|++|
T Consensus 54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD---VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 3344444445567899999999999999984 33 3899999999999999886 33223333345555566999
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------------------------hhHH
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------------------DEII 461 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------------------~~~~ 461 (506)
|+|++..+|+|... .++..+|.++.|+|||||.++|.+.. ...+
T Consensus 131 D~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 209 (287)
T 1kpg_A 131 DRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209 (287)
T ss_dssp SEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred eEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHH
Confidence 99999999997642 57789999999999999999996532 1356
Q ss_pred HHHHHHhcCCceEEEe
Q 010592 462 KVKKIVGGMRWDTKMV 477 (506)
Q Consensus 462 ~~~~~~~~~~w~~~~~ 477 (506)
++.+++++.+|++...
T Consensus 210 ~~~~~l~~aGf~~~~~ 225 (287)
T 1kpg_A 210 MVQECASANGFTVTRV 225 (287)
T ss_dssp HHHHHHHTTTCEEEEE
T ss_pred HHHHHHHhCCcEEEEE
Confidence 7788888899986543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=131.07 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=96.5
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccc---ccCCCCCCceeEEEEcc
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC---EAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~---~~~~~~p~s~Dlv~~~~ 423 (506)
.+......+|||+|||+|.++..|++.+. .+|+++|.++.|++.|.++.....+...+ +.++..+++||+|++..
T Consensus 38 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 115 (243)
T 3bkw_A 38 MLPEVGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSL 115 (243)
T ss_dssp HSCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEES
T ss_pred hccccCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEec
Confidence 34444567899999999999999998752 28999999999999999885311111222 23343348999999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---------------------------------------------
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--------------------------------------------- 458 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--------------------------------------------- 458 (506)
+|++. .++..+|.++.|+|||||+++|.+...
T Consensus 116 ~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (243)
T 3bkw_A 116 ALHYV---EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHR 192 (243)
T ss_dssp CGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEEC
T ss_pred ccccc---chHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEec
Confidence 98854 478899999999999999999965210
Q ss_pred hHHHHHHHHhcCCceEEEee
Q 010592 459 EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 459 ~~~~~~~~~~~~~w~~~~~~ 478 (506)
..+++.+++.+.++++....
T Consensus 193 t~~~~~~~l~~aGF~~~~~~ 212 (243)
T 3bkw_A 193 TVGTTLNALIRSGFAIEHVE 212 (243)
T ss_dssp CHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHcCCEeeeec
Confidence 35788899999999976443
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-14 Score=134.15 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHH------------cCCCeEEEEeccccCCCCC-CC
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALE------------RGVPAVIGVLGTIKMPYAS-RA 166 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~------------~~~~~~~~~~d~~~lp~~~-~s 166 (506)
++.+|||+|||+|.++..|++++ |+++|+|+.++..+..+.... ...++.+.++|+..+++++ ++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~ 101 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 101 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence 34599999999999999999875 888999887775544322110 1346788899999998775 79
Q ss_pred eeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 167 FDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
||+|++..+++|+..+. ..+++++.|+|||||++++.
T Consensus 102 fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 102 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999988887765322 57899999999999984443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=133.03 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=91.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+. +|+++|.++.|++.|.++.. +.....-.+.+ ..+++||+|++.++|+|..
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~- 117 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID- 117 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS-
T ss_pred CCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc-
Confidence 45799999999999999998753 79999999999999998742 12222112223 2348999999999998554
Q ss_pred cCCHHHHHHHHh-hhccCCcEEEEEeChh---------------------------------hHHHHHHHHhcCCceEEE
Q 010592 431 KCNIEDILLEMD-RILRPEGAIIIRDEVD---------------------------------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 431 ~~~~~~~l~e~~-RvLrPgG~~ii~d~~~---------------------------------~~~~~~~~~~~~~w~~~~ 476 (506)
++..+|.|+. |+|||||+++|.+... ..+++++++++.+|++..
T Consensus 118 --~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 195 (250)
T 2p7i_A 118 --DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 195 (250)
T ss_dssp --SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred --CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 6789999999 9999999999976321 346788899999998664
Q ss_pred e
Q 010592 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
.
T Consensus 196 ~ 196 (250)
T 2p7i_A 196 R 196 (250)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-14 Score=146.50 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=111.6
Q ss_pred hhhhhhhhHHHHHHHHH-HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceec--
Q 010592 327 YQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH-- 403 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~-~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~-- 403 (506)
+......|..+...+.. ++..+......+|||+|||+|.++..|++.+ .+|+++|.|++|++.|.++++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~~~~~~~~~~ 157 (416)
T 4e2x_A 81 HSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREKGIRVRTDFF 157 (416)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTTTCCEECSCC
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHcCCCcceeee
Confidence 44556678777766543 4445555556789999999999999999976 38999999999999999997533221
Q ss_pred --cccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh--------------------hhHH
Q 010592 404 --DWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------------DEII 461 (506)
Q Consensus 404 --~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------------------~~~~ 461 (506)
+..+.++..+++||+|++.++|+|.. ++..+|.++.|+|||||+++|.+.. -..+
T Consensus 158 ~~~~~~~l~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 234 (416)
T 4e2x_A 158 EKATADDVRRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSAT 234 (416)
T ss_dssp SHHHHHHHHHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHH
T ss_pred chhhHhhcccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHH
Confidence 11122332248999999999999654 7899999999999999999997532 0347
Q ss_pred HHHHHHhcCCceEEEeec
Q 010592 462 KVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 462 ~~~~~~~~~~w~~~~~~~ 479 (506)
.++.++.+.++++.....
T Consensus 235 ~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 235 SVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHcCCEEEEEEE
Confidence 899999999999765444
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=129.62 Aligned_cols=142 Identities=11% Similarity=0.114 Sum_probs=102.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccc----eeccccccCCCCC---CceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIG----IYHDWCEAFSTYP---RTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~----~~~~~~~~~~~~p---~s~Dlv~ 420 (506)
...+|||+|||+|.++..|++.+ ...+|+++|.++.|++.|.++- +.. .+...+.++...+ ++||+|.
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 45689999999999999999864 2358999999999999998862 100 2233344554444 7999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------------------hHHHHH----HHHhcCCceE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------------EIIKVK----KIVGGMRWDT 474 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------------~~~~~~----~~~~~~~w~~ 474 (506)
|..+|.+.. ..++..+|.++.|+|||||.+++....+ ..++++ .++...++++
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 108 VIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred EHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 999998653 2234689999999999999887754322 223444 8899999998
Q ss_pred EEeecCCCC---CCCeEEEEEEec
Q 010592 475 KMVDHEDGP---LVPEKILVAVKQ 495 (506)
Q Consensus 475 ~~~~~~~~~---~~~~~~l~~~k~ 495 (506)
......++. ..+..+.+++|.
T Consensus 187 ~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 187 RFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEecCCccccCCCCeEEEEEecc
Confidence 866444322 236788888885
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=132.84 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=94.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc---CCCCCCceeEEEEcccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA---FSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~---~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.....+...+.+ ++..+++||+|++.++|+|.
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~- 129 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT- 129 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS-
T ss_pred CCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc-
Confidence 4589999999999999999985 4899999999999999988432222223333 33334899999999999854
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEEEe
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
.++..+|.++.|+|||||+++|.+.. -...++++++.+.+|++...
T Consensus 130 --~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 130 --EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp --SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred --cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 57789999999999999999997621 12367999999999996643
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=127.98 Aligned_cols=107 Identities=15% Similarity=0.229 Sum_probs=84.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCC--CCceeEEEEcc
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTY--PRTYDLIHAHG 423 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~--p~s~Dlv~~~~ 423 (506)
.+......+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++.. .+.+...+.++..+ +++||+|+|..
T Consensus 46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~ 122 (216)
T 3ofk_A 46 SLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAE 122 (216)
T ss_dssp HTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEES
T ss_pred HcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEcc
Confidence 4455566789999999999999999864 689999999999999998742 12233334555444 38999999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+|++..+...+..+|.++.|+|||||.++|.+.
T Consensus 123 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 123 VLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp CGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 999766544556889999999999999999764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=126.65 Aligned_cols=121 Identities=15% Similarity=0.244 Sum_probs=90.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGL 424 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dlv~~~~~ 424 (506)
....+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ ++ ..+...+.++..+ +++||+|++..+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~ 106 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTFDRQYDFILSTVV 106 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCCCCCEEEEEEESC
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCCCCCceEEEEcch
Confidence 345689999999999999999875 4899999999999988775 22 1122222333222 689999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh--------------hhHHHHHHHHhcCCceEEEee
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------------~~~~~~~~~~~~~~w~~~~~~ 478 (506)
|++.. ..++..+|.++.|+|||||+++|.+.. -..+++++++.. |++....
T Consensus 107 l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 107 LMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 88654 346788999999999999998885421 145788888887 8866543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=136.62 Aligned_cols=123 Identities=16% Similarity=0.313 Sum_probs=96.3
Q ss_pred CCChhhHHHHHHHHHhhC----CCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--C
Q 010592 79 TQFPQGADKYIDQLASVI----PIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--P 149 (506)
Q Consensus 79 ~~f~~~~~~~~~~l~~~l----~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~ 149 (506)
..+........+.+.+.+ ... ++.+|||||||+|.++..|++. .++++|+++.++..+..... ..+. .
T Consensus 57 ~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~ 133 (297)
T 2o57_A 57 DEIREASLRTDEWLASELAMTGVLQ--RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNN-QAGLADN 133 (297)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-HHTCTTT
T ss_pred cchHHHHHHHHHHHHHHhhhccCCC--CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-hcCCCcc
Confidence 344455566667777776 433 3459999999999999999875 48899998876655443333 3333 4
Q ss_pred eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 150 AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 150 ~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.+...|...+|+++++||+|++..+++|+ +++..+|+++.|+|||||+|++..+
T Consensus 134 ~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 134 ITVKYGSFLEIPCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp EEEEECCTTSCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEcCcccCCCCCCCEeEEEecchhhhc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 788889999999999999999999999886 5589999999999999999999864
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.5e-14 Score=134.24 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=99.9
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----cceeccccccCCCCCCceeE
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYPRTYDL 418 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----~~~~~~~~~~~~~~p~s~Dl 418 (506)
.++..+......+|||+|||+|.++..|++.+ ..+|+++|.++.|++.|.++.. +.....-.+.++..+++||+
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEE
Confidence 34444554556789999999999999998764 2479999999999999998742 12221112334433489999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------hhHHHHHHHHhcCCceEEEeec
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
|++..+|++..+ .++..+|.++.|+|||||+++|.+.. ...+++++++++.+|++.....
T Consensus 162 v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 162 IVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 999999986542 35788999999999999999998741 1348899999999999765543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-14 Score=133.47 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=88.5
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc--CCCeEEEEeccccCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKMPY 162 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~--~~~~~~~~~d~~~lp~ 162 (506)
.+++.+.+.++ ++.+|||||||+|.++..+++.+ ++++|+++. +++.+.++ ...+.+.+.|...+++
T Consensus 42 ~~~~~l~~~~~----~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~d~~~~~~ 112 (242)
T 3l8d_A 42 TIIPFFEQYVK----KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEV-----MIQKGKERGEGPDLSFIKGDLSSLPF 112 (242)
T ss_dssp THHHHHHHHSC----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHTTTCBTTEEEEECBTTBCSS
T ss_pred HHHHHHHHHcC----CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHH-----HHHHHHhhcccCCceEEEcchhcCCC
Confidence 34455666553 34599999999999999999884 777877664 44455544 3567888899999999
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++++||+|++..+++|+ +++..+++++.++|||||+++++.+..
T Consensus 113 ~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 113 ENEQFEAIMAINSLEWT-EEPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp CTTCEEEEEEESCTTSS-SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCCccEEEEcChHhhc-cCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 99999999999999885 678899999999999999999987433
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=136.48 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=87.1
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCce
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTY 416 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~ 416 (506)
..++..+...+..+|||+|||+|.++..|++. + .+|+++|.|+.|++.|.++ |+...+...+.++..++++|
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 44444455555678999999999999999886 4 5899999999999999876 33223333445555558999
Q ss_pred eEEEEccccccccCc------CCHHHHHHHHhhhccCCcEEEEEe
Q 010592 417 DLIHAHGLFSLYKDK------CNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~------~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|++..+|++..+. .+...+|.++.|+|||||+++|.+
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999977543 345789999999999999999965
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=134.12 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=93.8
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeE
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDL 418 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dl 418 (506)
+..+...+..+|||+|||+|.++..|++.. ..+|+++|.++.|++.|.++ |+...+...+.++... +++||+
T Consensus 29 ~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 106 (256)
T 1nkv_A 29 GRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDV 106 (256)
T ss_dssp HHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEE
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCE
Confidence 333444456689999999999999998752 24799999999999988775 3322222233444332 589999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~ 475 (506)
|+|..++.+.. ++..+|.|+.|+|||||+++|.+.. ....++.+++.+.+|+..
T Consensus 107 V~~~~~~~~~~---~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 182 (256)
T 1nkv_A 107 AACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 182 (256)
T ss_dssp EEEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred EEECCChHhcC---CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeE
Confidence 99988887543 6788999999999999999997631 123678889999999854
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=133.23 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=92.3
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
......+.+.+. ...++.+|||||||+|.++..+++. .++++|+++.++..+... +...++ .+.+.+.|...+
T Consensus 31 ~~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~ 108 (267)
T 3kkz_A 31 PEVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRN-ARQSGLQNRVTGIVGSMDDL 108 (267)
T ss_dssp HHHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHH-HHHcCCCcCcEEEEcChhhC
Confidence 445555666664 1234569999999999999999986 489999988766544433 333444 388889999999
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+++++||+|+|..+++|+ ++..+++++.++|||||++++..+
T Consensus 109 ~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 109 PFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp CCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9989999999999999886 679999999999999999999864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=133.11 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=91.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
...++.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++..+.. .+...++ .+.+.+.|...+
T Consensus 22 ~~~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 22 EEKYATLGRVLRMK--PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVSERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHHHTCCC--TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEECChHhC
Confidence 55666777777543 4459999999999999999875 48999999877755443 3334444 478888899888
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++ +++||+|+|..+++|+ +++..+|+++.++|||||++++..+
T Consensus 99 ~~-~~~fD~V~~~~~~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 99 VA-NEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CC-SSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred Cc-CCCCCEEEECCChHhc-CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 87 7899999999998775 4679999999999999999999764
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=126.74 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=89.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~ 432 (506)
..+|||+|||+|.++..|+.. +++|.++.|++.+.++++. ....-.+.++..+++||+|++..+|.+. .
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~l~~~---~ 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVF-VLKGTAENLPLKDESFDFALMVTTICFV---D 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCE-EEECBTTBCCSCTTCEEEEEEESCGGGS---S
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCE-EEEcccccCCCCCCCeeEEEEcchHhhc---c
Confidence 468999999999999999874 8999999999999988532 2211123344334799999999998854 4
Q ss_pred CHHHHHHHHhhhccCCcEEEEEeChh------------------------hHHHHHHHHhcCCceEEEe
Q 010592 433 NIEDILLEMDRILRPEGAIIIRDEVD------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
++..+|.++.|+|||||.++|.+... ..+++.+++.+.+|++...
T Consensus 117 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 117 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 77899999999999999999975321 4578899999999997643
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=128.03 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI 158 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~ 158 (506)
......+.+.+.++.. ++ +|||||||+|.++..|+++ .++++|+++.++..+..... ..+. .+.+.+.|..
T Consensus 28 ~~~~~~~~~~~~~~~~--~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~d~~ 103 (219)
T 3dlc_A 28 IYPIIAENIINRFGIT--AG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIA-DANLNDRIQIVQGDVH 103 (219)
T ss_dssp HHHHHHHHHHHHHCCC--EE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEECBTT
T ss_pred ccHHHHHHHHHhcCCC--CC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-hccccCceEEEEcCHH
Confidence 3455556666666432 23 8999999999999999875 58899998876655444333 3333 5788889999
Q ss_pred cCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 159 KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 159 ~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.+++++++||+|+++.+++|+ +++..+++++.++|||||++++..+.
T Consensus 104 ~~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 104 NIPIEDNYADLIVSRGSVFFW-EDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp BCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HCCCCcccccEEEECchHhhc-cCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 999999999999999999886 67899999999999999999998643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=130.17 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=102.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-c-------eeccccccCCCC---CCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-G-------IYHDWCEAFSTY---PRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~-------~~~~~~~~~~~~---p~s~Dlv~~ 421 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++... + .+...+.++..+ +++||+|.+
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 4589999999999999999985 5899999999999999885321 1 122233444333 489999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------------------------------hhH
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------------------------DEI 460 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------------------------~~~ 460 (506)
..++.+..+......+|.++.|+|||||+++|.+.. -..
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE 187 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence 999986654333448999999999999999997531 146
Q ss_pred HHHHHHHhcCCceEEEee-----cCCCCCCCeEEEEEEe
Q 010592 461 IKVKKIVGGMRWDTKMVD-----HEDGPLVPEKILVAVK 494 (506)
Q Consensus 461 ~~~~~~~~~~~w~~~~~~-----~~~~~~~~~~~l~~~k 494 (506)
+++++++++.+|++..+. ..+|......++.+.+
T Consensus 188 ~~l~~ll~~aGf~~~~~~~~~~~~~~g~~~~~~~i~~~~ 226 (235)
T 3sm3_A 188 KELVFLLTDCRFEIDYFRVKELETRTGNKILGFVIIAQK 226 (235)
T ss_dssp HHHHHHHHTTTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEecceeeccCCccceEEEeeHH
Confidence 789999999999977443 2245444455565544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=129.01 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=84.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+...........+.+...|...+++++++||+|+++.++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 116 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTF 116 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCG
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhh
Confidence 3459999999999999988764 48899998877765554444333235888888999999999999999999999
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|+ +++..+++++.++|||||++++..
T Consensus 117 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 143 (219)
T 3dh0_A 117 HEL-SEPLKFLEELKRVAKPFAYLAIID 143 (219)
T ss_dssp GGC-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhc-CCHHHHHHHHHHHhCCCeEEEEEE
Confidence 876 567999999999999999999975
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=130.01 Aligned_cols=124 Identities=15% Similarity=0.237 Sum_probs=92.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCCCCceeEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIH 420 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~p~s~Dlv~ 420 (506)
.+......+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ |+ +.....-.+.++..+++||+|+
T Consensus 16 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 92 (239)
T 1xxl_A 16 TAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIIT 92 (239)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEE
T ss_pred HhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEE
Confidence 3444556789999999999999998875 3899999999999988775 32 1222211233443348999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-------------------------hHHHHHHHHhcCCceEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------------------~~~~~~~~~~~~~w~~~ 475 (506)
+..++.+. .++..+|.++.|+|||||+++|.+... ..+++.+++.+.+++..
T Consensus 93 ~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~ 169 (239)
T 1xxl_A 93 CRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 169 (239)
T ss_dssp EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred ECCchhhc---cCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEE
Confidence 99888854 478899999999999999999975321 23556777777888754
Q ss_pred E
Q 010592 476 M 476 (506)
Q Consensus 476 ~ 476 (506)
.
T Consensus 170 ~ 170 (239)
T 1xxl_A 170 D 170 (239)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-13 Score=124.60 Aligned_cols=150 Identities=16% Similarity=0.115 Sum_probs=106.7
Q ss_pred hhhhhhhhhhhHHHHHHHHH------------HhhhcC-CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH
Q 010592 324 AESYQEDSNKWKKHVNAYKK------------INRLLD-SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL 390 (506)
Q Consensus 324 ~~~f~~d~~~W~~~v~~y~~------------~~~~~~-~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l 390 (506)
.+.|..+...|......|.. ++..+. .....+|||+|||+|.++..|. .+|+++|.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~-- 97 (215)
T 2zfu_A 26 QRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL-- 97 (215)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--
T ss_pred HHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--
Confidence 45577777777766555533 222222 2345689999999999998884 36899999966
Q ss_pred HHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---hHHHHHHHH
Q 010592 391 GVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIV 467 (506)
Q Consensus 391 ~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~ 467 (506)
.+ .....-.+.++..+++||+|++..+|+ ..++..+|.++.|+|||||+++|.+... ..+++.+++
T Consensus 98 ------~~-~~~~~d~~~~~~~~~~fD~v~~~~~l~----~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l 166 (215)
T 2zfu_A 98 ------DP-RVTVCDMAQVPLEDESVDVAVFCLSLM----GTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAV 166 (215)
T ss_dssp ------ST-TEEESCTTSCSCCTTCEEEEEEESCCC----SSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHH
T ss_pred ------Cc-eEEEeccccCCCCCCCEeEEEEehhcc----ccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 11 111111233443348999999988885 3678999999999999999999988654 568899999
Q ss_pred hcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 468 GGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 468 ~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.+.+|++...+... ....+++++|.
T Consensus 167 ~~~Gf~~~~~~~~~---~~~~~~~~~k~ 191 (215)
T 2zfu_A 167 TKLGFKIVSKDLTN---SHFFLFDFQKT 191 (215)
T ss_dssp HHTTEEEEEEECCS---TTCEEEEEEEC
T ss_pred HHCCCEEEEEecCC---CeEEEEEEEec
Confidence 99999976654432 24688888886
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=132.03 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=91.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
......+.+.+... .++.+|||||||+|.++..+++. .++++|+++.++..+.. .+...++. +.+.+.|...+
T Consensus 31 ~~~~~~~l~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~ 108 (257)
T 3f4k_A 31 PEATRKAVSFINEL-TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADRVKGITGSMDNL 108 (257)
T ss_dssp HHHHHHHHTTSCCC-CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChhhC
Confidence 44555566666321 23459999999999999999876 58999998876654443 33344443 78888999999
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+++++||+|+|..+++|+ +...+++++.++|||||+++++.+
T Consensus 109 ~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 109 PFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp SSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999886 578999999999999999999864
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=129.72 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=87.8
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 010592 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDM 169 (506)
Q Consensus 92 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDl 169 (506)
+.+.+.. .++.+|||||||+|.++..+++. .++++|+++.++..+...........+.+.+.|...+|+++++||+
T Consensus 13 ~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 90 (239)
T 1xxl_A 13 MIKTAEC--RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI 90 (239)
T ss_dssp HHHHHTC--CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred HHHHhCc--CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEE
Confidence 3444433 34559999999999999999887 4899999887775544433332223478888899999999999999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+|..+++|+ .++..++.++.++|||||++++..+
T Consensus 91 v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 91 ITCRYAAHHF-SDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp EEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCchhhc-cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999886 5689999999999999999999753
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=128.31 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=97.0
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCC--CceeEEEEcccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYP--RTYDLIHAHGLFSL 427 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p--~s~Dlv~~~~~~~~ 427 (506)
.+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++. ....+...+.++..++ .+||+|++..+|.+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 489999999999999998865 68999999999999998873 2223344455555543 79999999999986
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeChh-----------hHHHHHHHHhcCCceEEEeec
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-----------EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----------~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.. ..+...+|.++.|+|||||++++.+... ..+++.+++.+.+|++..++.
T Consensus 145 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 145 IE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp SC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 64 4477899999999999999999964311 468899999999999775543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=132.25 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=87.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHc--CCCeEEEEeccccCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~--~~~~~~~~~d~~~lp~~~ 164 (506)
..+.+.++. .++.+|||||||+|.++..+++.+ ++++|+++.++ +.++++ ...+.+.+.|...+++++
T Consensus 34 ~~l~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~d~~~~~~~~ 106 (253)
T 3g5l_A 34 HELKKMLPD--FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERML-----TEAKRKTTSPVVCYEQKAIEDIAIEP 106 (253)
T ss_dssp HHHHTTCCC--CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-----HHHHHHCCCTTEEEEECCGGGCCCCT
T ss_pred HHHHHhhhc--cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHH-----HHHHHhhccCCeEEEEcchhhCCCCC
Confidence 455666643 345699999999999999999873 77888876544 444443 346788889999999989
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|+|..+++|+ +++..+++++.++|||||.|+++.+.
T Consensus 107 ~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 107 DAYNVVLSSLALHYI-ASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp TCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeEEEEEchhhhhh-hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999999999999775 67899999999999999999998643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=133.10 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=92.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eeccccccCC-CCCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAFS-TYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~~~~~~~~-~~p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++ |+.. .+..-.++++ ..+++||+|++..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4689999999999999999875 5899999999999999876 3211 2222223344 23489999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------------------------------hHHHHHHHHhcC
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------------------------EIIKVKKIVGGM 470 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------------------------~~~~~~~~~~~~ 470 (506)
|.+. .++..+|.++.|+|||||+++|.+... ..+++.+++++.
T Consensus 146 l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 222 (285)
T 4htf_A 146 LEWV---ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA 222 (285)
T ss_dssp GGGC---SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT
T ss_pred hhcc---cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC
Confidence 9855 477899999999999999999976321 236889999999
Q ss_pred CceEEEe
Q 010592 471 RWDTKMV 477 (506)
Q Consensus 471 ~w~~~~~ 477 (506)
+|++...
T Consensus 223 Gf~v~~~ 229 (285)
T 4htf_A 223 GWQIMGK 229 (285)
T ss_dssp TCEEEEE
T ss_pred CCceeee
Confidence 9997633
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=133.02 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=93.9
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC---CCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY---PRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~---p~s~Dlv~~~~ 423 (506)
.+..+|||+|||+|.++..|++.+ ..+|+++|.++.|++.|.++ |+...+...+.++..+ +++||+|+|..
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHV--TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTC--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 445689999999999999999874 25899999999999998876 3322233333444333 48999999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh---------------------hhHHHHHHHHhcCCceEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
+|.+. ++..+|.++.|+|||||+++|.+.. .....+.+++.+.+|++...
T Consensus 123 ~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 123 AIYNI----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp CGGGT----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred Cceec----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 99854 6789999999999999999997632 13567888999999996543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=132.38 Aligned_cols=118 Identities=10% Similarity=0.118 Sum_probs=91.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC--CCCCCceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF--STYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~--~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+ .+|+++|.|+.|++.+.++ + .....-.+++ +..+++||+|+|..+|.+..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~-~-~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~- 115 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEGK-F-NVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD- 115 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHTT-S-EEECSCHHHHHHTSCTTCBSEEEEESCGGGSC-
T ss_pred CCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-c-ceeeccHHHHhhhcCCCCeeEEEECCchhhCC-
Confidence 4689999999999999998875 4789999999999999988 2 2221111222 33349999999999999665
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeChh-------------------hHHHHHHHHhcCCceEEE
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDEVD-------------------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------------~~~~~~~~~~~~~w~~~~ 476 (506)
..++..+|.++.|+|||||+++|..... ..+.+..++.+.++++..
T Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~ 180 (240)
T 3dli_A 116 PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVK 180 (240)
T ss_dssp GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEE
Confidence 3356899999999999999999975321 336788899999998653
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-13 Score=127.93 Aligned_cols=138 Identities=13% Similarity=0.176 Sum_probs=102.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCC--CCCceeEEEEcc-ccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFST--YPRTYDLIHAHG-LFSLY 428 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~--~p~s~Dlv~~~~-~~~~~ 428 (506)
.+|||+|||+|.++..|++. .+|+++|.++.|++.|.++.. ...+...+.++.. ++++||+|.+.. ++++.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 110 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYL 110 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGC
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhc
Confidence 68999999999999999886 489999999999999987621 0111222233333 248999999986 88877
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeC----------------------------------------------------
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDE---------------------------------------------------- 456 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~---------------------------------------------------- 456 (506)
.+..++..+|.++.|+|||||.+++.-.
T Consensus 111 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (243)
T 3d2l_A 111 QTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYD 190 (243)
T ss_dssp CSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceE
Confidence 6556778899999999999999998210
Q ss_pred ---------hhhHHHHHHHHhcCCceEEEeecC-----CCCCCCeEEEEEEec
Q 010592 457 ---------VDEIIKVKKIVGGMRWDTKMVDHE-----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 457 ---------~~~~~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~l~~~k~ 495 (506)
.-..+++++++++.++++...... .+...+..+++|+|+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 191 RVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred EEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 014578999999999997654322 122346788999984
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=132.93 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=95.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc---ceeccccccC---CCCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI---GIYHDWCEAF---STYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~---~~~~~~~~~~---~~~p~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|.++..|++.+ ..+|+++|.++.|++.|.++... ..+...+.++ +..+++||+|++..+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 35689999999999999998875 35899999999999999887421 1122223333 3233699999999998
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---------------hHHHHHHHHhcCCceEEEeecC
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------EIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.+..+ ..+..+|.++.|+|||||+++|.|... ..+++++++.+.+|++......
T Consensus 157 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 157 GHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp GGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 86542 124589999999999999999976421 4788999999999997755443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=126.07 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=83.5
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc--eeccccccC-CCCC-Cce
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAF-STYP-RTY 416 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~--~~~~~~~~~-~~~p-~s~ 416 (506)
+..+......+|||+|||+|.++..+++.. ....|+++|.++.|++.|.++ |+.. .+...+.++ ..++ ++|
T Consensus 215 l~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~f 293 (375)
T 4dcm_A 215 MQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRF 293 (375)
T ss_dssp HHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCE
T ss_pred HHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCe
Confidence 333444444789999999999999998752 125899999999999988775 2211 121122333 2344 799
Q ss_pred eEEEEccccccccC--cCCHHHHHHHHhhhccCCcEEEEEe--ChhhHHHHHHHHh
Q 010592 417 DLIHAHGLFSLYKD--KCNIEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVG 468 (506)
Q Consensus 417 Dlv~~~~~~~~~~~--~~~~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~ 468 (506)
|+|.++..|++... ......+|.++.|+|||||.++|.. ..++...+++++.
T Consensus 294 D~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg 349 (375)
T 4dcm_A 294 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 349 (375)
T ss_dssp EEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred eEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence 99999988874321 2223468999999999999999954 3446677777666
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=131.06 Aligned_cols=116 Identities=16% Similarity=0.276 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcC---CCeEEEEec
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERG---VPAVIGVLG 156 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~---~~~~~~~~d 156 (506)
.+.....+.+.+.+... ++.+|||||||+|.++..+++. .++++|+++. +++.++++. ..+.+.+.|
T Consensus 38 ~~~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~d 110 (266)
T 3ujc_A 38 SGGLEATKKILSDIELN--ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSN-----IVNMANERVSGNNKIIFEAND 110 (266)
T ss_dssp TTHHHHHHHHTTTCCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH-----HHHHHHHTCCSCTTEEEEECC
T ss_pred cchHHHHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHHhhcCCCeEEEECc
Confidence 34445556677776443 4559999999999999999886 4788888664 445555543 467888889
Q ss_pred cccCCCCCCCeeEEEEcCcccccC-CChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 157 TIKMPYASRAFDMAHCSRCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 157 ~~~lp~~~~sfDlV~~~~~l~~~~-~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...+|+++++||+|++..+++|+. .+...+++++.++|||||++++..+
T Consensus 111 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 111 ILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999999999999999999998863 4458999999999999999999864
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-13 Score=127.38 Aligned_cols=112 Identities=11% Similarity=0.131 Sum_probs=83.1
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC------CeEEEEecc
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV------PAVIGVLGT 157 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~------~~~~~~~d~ 157 (506)
..+.+.+.+.. .++.+|||||||+|.++..|++. .++++|+++.++..+...... .+. .+.+...|.
T Consensus 17 ~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~ 93 (219)
T 3jwg_A 17 RLGTVVAVLKS--VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKI-DRLPEMQRKRISLFQSSL 93 (219)
T ss_dssp HHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTG-GGSCHHHHTTEEEEECCS
T ss_pred HHHHHHHHHhh--cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHh-hccccccCcceEEEeCcc
Confidence 33445555432 23459999999999999999875 478999988666544433322 121 578888888
Q ss_pred ccCCCCCCCeeEEEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEE
Q 010592 158 IKMPYASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~ 203 (506)
..+++++++||+|+|..+++|+ +++ ..+++++.++|||||+++.+
T Consensus 94 ~~~~~~~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 94 VYRDKRFSGYDAATVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp SSCCGGGTTCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cccccccCCCCEEEEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 8888878899999999999886 433 68999999999999966554
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=132.82 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=92.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c-------------------cceeccccccCCC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L-------------------IGIYHDWCEAFST 411 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~-------------------~~~~~~~~~~~~~ 411 (506)
...+|||+|||+|.++..|++.| .+|+++|.|+.|++.|+++. + ...+...+.++..
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 34689999999999999999987 48999999999999997653 1 1233445566655
Q ss_pred CC----CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe-C-----------hhhHHHHHHHHhcCCceEE
Q 010592 412 YP----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-E-----------VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 412 ~p----~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-~-----------~~~~~~~~~~~~~~~w~~~ 475 (506)
++ ++||+|.+..+|.++. ..+...++.+|.|+|||||+++|.. . .-..+++.+++.. .|++.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 43 7999999988888664 4456789999999999999996531 0 0145788998887 48876
Q ss_pred Eee
Q 010592 476 MVD 478 (506)
Q Consensus 476 ~~~ 478 (506)
...
T Consensus 223 ~~~ 225 (252)
T 2gb4_A 223 CLE 225 (252)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=121.10 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=102.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC--C-CCceeEEEEc-ccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST--Y-PRTYDLIHAH-GLFSL 427 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~--~-p~s~Dlv~~~-~~~~~ 427 (506)
+..+|||+|||+|.++..|++.+ .+|+++|.++.+++.+.++.. .+...+.++.. + +++||+|+++ .++++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~--~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDFP--EARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCT--TSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhCC--CCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 45689999999999999999875 489999999999999988742 11112233332 2 3899999998 67764
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecC-----CCCCCCeEEEEEEec
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHE-----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~l~~~k~ 495 (506)
.. ..+...+|.++.|+|||||.++|..... ..+++.+++.+.++++...... .....+..+++++|+
T Consensus 121 ~~-~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 121 LA-EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp SC-HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred cC-hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 42 2345789999999999999999976543 5678999999999997755332 122346788888884
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=133.42 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=78.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCCCceeEEEEccccc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~ 426 (506)
+......+|||+|||+|.++..|++.+ .+|+++|.|+.|++.+.++. -+.....-.+.++ ++++||+|++..+|.
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 128 (279)
T 3ccf_A 53 LNPQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNYPHLHFDVADARNFR-VDKPLDAVFSNAMLH 128 (279)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-CSSCEEEEEEESCGG
T ss_pred hCCCCCCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-cCCCcCEEEEcchhh
Confidence 333456689999999999999999854 58999999999999998873 1122211123333 258999999999988
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+. .++..+|.|+.|+|||||+++|..
T Consensus 129 ~~---~d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 129 WV---KEPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp GC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hC---cCHHHHHHHHHHhcCCCcEEEEEe
Confidence 54 478899999999999999999964
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=130.62 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=80.2
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||||||+|.++..+++. .++++|+++.++ +.++++.. .+.+.+.+...+ +++++||+|+|..+++|+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~ 116 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAI-----SHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHI 116 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHH-----HHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGC
T ss_pred CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHH-----HHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhh
Confidence 347999999999999999887 488888876544 44444433 577888888777 467899999999999885
Q ss_pred CCChHHHHHHHH-HhcCCCeEEEEEcCCC
Q 010592 180 GANDGRYMIEVD-RVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~~~~~~l~e~~-rvLkPGG~li~~~p~~ 207 (506)
+++..+|+++. |+|||||+++++++..
T Consensus 117 -~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 117 -DDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp -SSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred -cCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 56899999999 9999999999988654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=128.03 Aligned_cols=127 Identities=12% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----cc----ceeccccccCCCCC---CceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LI----GIYHDWCEAFSTYP---RTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~----~~~~~~~~~~~~~p---~s~Dlv~ 420 (506)
...+|||+|||+|.++..|++.+. ..+|+++|.++.|++.|.++- +. ..+...+.+++..+ ++||+|.
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 456899999999999999998642 248999999999999998862 11 02333445555444 7999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------------------hHHHHH----HHHhcCCceE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------------EIIKVK----KIVGGMRWDT 474 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------------~~~~~~----~~~~~~~w~~ 474 (506)
|..+|.+.. ..++..+|.++.|+|||||.+++.+..+ ..++++ .++.+.++++
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v 186 (217)
T 3jwh_A 108 VIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNV 186 (217)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEE
T ss_pred eHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceE
Confidence 999998663 2245789999999999999888865432 223344 8899999998
Q ss_pred EEeecC
Q 010592 475 KMVDHE 480 (506)
Q Consensus 475 ~~~~~~ 480 (506)
......
T Consensus 187 ~~~~~g 192 (217)
T 3jwh_A 187 QFQPIG 192 (217)
T ss_dssp EECCCS
T ss_pred EEEecC
Confidence 765433
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=130.69 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||||||+|.++..+++. .++++|+++.++..+.... ......+.+.+.|...+++++++||+|++..+++|+
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 117 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV 117 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchhhc
Confidence 4569999999999999999887 4788888776554333222 112356788888999999989999999999998664
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEE
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++...+++++.++|||||++++.
T Consensus 118 -~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 118 -PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHCCCCcEEEEE
Confidence 57899999999999999999987
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=132.24 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
...+...+.+.+.. .++.+|||||||+|.++..|++. .++++|+++.++..+...... ...+.+...+...++
T Consensus 78 ~~~~~~~~l~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 78 DIEGSRNFIASLPG--HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETAT 153 (254)
T ss_dssp HHHHHHHHHHTSTT--CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGCC
T ss_pred HHHHHHHHHHhhcc--cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc--CCceEEEEccHHHCC
Confidence 34444556666633 34569999999999999998875 388999887555333222111 134777888888899
Q ss_pred CCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 162 YASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++++||+|+|..+++|+.+ +...+++++.++|||||+|++..+
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 98899999999999988653 347999999999999999999874
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-13 Score=129.69 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=94.7
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC---CCCCCce
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF---STYPRTY 416 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~---~~~p~s~ 416 (506)
++..+......+|||+|||+|.++..|++.. ..+|+++|.++.|++.|.++ |+...+...+.++ +..+++|
T Consensus 53 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 130 (273)
T 3bus_A 53 MIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASF 130 (273)
T ss_dssp HHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCE
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCc
Confidence 3344444556789999999999999998742 26899999999999988876 3322222223333 3334899
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-------------------------hhHHHHHHHHhcCC
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------------------DEIIKVKKIVGGMR 471 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------------------------~~~~~~~~~~~~~~ 471 (506)
|+|++..+|.+. .+...+|.++.|+|||||+++|.+.. ...+.+.+++.+.+
T Consensus 131 D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 207 (273)
T 3bus_A 131 DAVWALESLHHM---PDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE 207 (273)
T ss_dssp EEEEEESCTTTS---SCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred cEEEEechhhhC---CCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence 999999999854 46789999999999999999997621 02366778888899
Q ss_pred ceEEE
Q 010592 472 WDTKM 476 (506)
Q Consensus 472 w~~~~ 476 (506)
|++..
T Consensus 208 f~~~~ 212 (273)
T 3bus_A 208 LVVTS 212 (273)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 98653
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-13 Score=132.05 Aligned_cols=122 Identities=19% Similarity=0.194 Sum_probs=92.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----CccceeccccccC---CCCCCceeEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF---STYPRTYDLIH 420 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~---~~~p~s~Dlv~ 420 (506)
......+|||+|||+|.++..|++. + .+|+++|.++.|++.|.++ |+...+...+.++ +..+++||+|+
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 155 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW 155 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEE
Confidence 3345668999999999999999875 4 4899999999999988775 3322222223343 33348999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~~ 476 (506)
+..++.|.. ++..+|.|+.|+|||||+|+|.+.. .....+.+++.+.+|++..
T Consensus 156 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 230 (297)
T 2o57_A 156 SQDAFLHSP---DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLR 230 (297)
T ss_dssp EESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEE
T ss_pred ecchhhhcC---CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEE
Confidence 999998654 5789999999999999999997531 1345677888889998654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=130.48 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=101.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-c-----------------------------
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-G----------------------------- 400 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~----------------------------- 400 (506)
....+|||+|||+|.++..++..+. .+|+++|.++.|++.|.++.-. +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 3456899999999999998887652 5899999999999998765210 0
Q ss_pred --ee-ccccccCC---C-CC---CceeEEEEccccccccC-cCCHHHHHHHHhhhccCCcEEEEEeChh-----------
Q 010592 401 --IY-HDWCEAFS---T-YP---RTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEVD----------- 458 (506)
Q Consensus 401 --~~-~~~~~~~~---~-~p---~s~Dlv~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------- 458 (506)
.+ ...+.++. . .+ ++||+|+|..+|++... ..++..+|.++.|+|||||+|++.+...
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 212 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence 01 11122221 1 23 79999999998885432 2357789999999999999999976321
Q ss_pred -----hHHHHHHHHhcCCceEEEeecCCC-------CCCCeEEEEEEec
Q 010592 459 -----EIIKVKKIVGGMRWDTKMVDHEDG-------PLVPEKILVAVKQ 495 (506)
Q Consensus 459 -----~~~~~~~~~~~~~w~~~~~~~~~~-------~~~~~~~l~~~k~ 495 (506)
..+.+.+++.+.++++........ ......+++|+|+
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred cccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 346899999999999765443211 1124678888885
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=132.63 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC--
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-- 160 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l-- 160 (506)
.+...+.+...++.. .++.+|||||||+|.++..+++. .++++|+++ .+++.+.++ +.+...+...+
T Consensus 25 ~~~~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~---~~~~~~d~~~~~~ 95 (240)
T 3dli_A 25 RELVKARLRRYIPYF-KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINE-----DMIKFCEGK---FNVVKSDAIEYLK 95 (240)
T ss_dssp HHHHHHHHGGGGGGT-TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCH-----HHHHHHHTT---SEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHhhh-cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCH-----HHHHHHHhh---cceeeccHHHHhh
Confidence 344555565555422 23458999999999999999886 477777765 455556554 56677777664
Q ss_pred CCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEcCCCC
Q 010592 161 PYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p~~~ 208 (506)
++++++||+|+|..+++|+.. +...+++++.++|||||++++.++...
T Consensus 96 ~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 96 SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 788899999999999988643 228999999999999999999886543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-13 Score=128.23 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=92.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC---CCCCCceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF---STYPRTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~---~~~p~s~Dlv~~~~~ 424 (506)
...+|||+|||+|.++..|++... .+|+++|.++.|++.|.++ |+...+...+.++ +..+++||+|+|..+
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence 345899999999999999988642 2899999999999988776 3322122233443 333489999999988
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh---------------------hhHHHHHHHHhcCCceEEEe
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
+.+. ++..+|.++.|+|||||+++|.+.. ...+++.+++.+.+|++...
T Consensus 124 l~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 124 IYNI----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp SCCC----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred Hhhc----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 8744 6889999999999999999998631 13467888999999996543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=132.97 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
++.+|||||||+|.++..|++. .++++|+++.++..+...........+.+...|...+++++++||+|++..+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 3569999999999999998876 4788999876664443332221123467788888888888889999999999988
Q ss_pred cCCC-hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 179 WGAN-DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 179 ~~~~-~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.+. ...+++++.++|||||+|++..+
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 6432 24899999999999999999764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-13 Score=130.52 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH-----------------HcCCCeEEEEeccccCCC
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL-----------------ERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~-----------------~~~~~~~~~~~d~~~lp~ 162 (506)
++.+|||+|||+|..+..|++++ |+++|+|+.++..+..+... ..+.++.+.++|+..+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 34589999999999999999985 78888887766544322210 012467889999998887
Q ss_pred CC-CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 163 AS-RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 163 ~~-~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
++ ++||+|++..+++++.... ..+++++.++|||||+|++.
T Consensus 148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 64 8999999998887765433 67999999999999999754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=130.64 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=93.5
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-- 148 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~-- 148 (506)
|......+.......++.+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+.
T Consensus 38 ~~~~~~~l~~a~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-~~~~~~~ 114 (287)
T 1kpg_A 38 FERDDMTLQEAQIAKIDLALGKLGLQ--PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANSENLR 114 (287)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTTTCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTCCCCS
T ss_pred ecCCCCCHHHHHHHHHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCC
Confidence 33334445555566777777777543 4459999999999999999853 4888888876654443322 22232
Q ss_pred CeEEEEeccccCCCCCCCeeEEEEcCcccccC-CChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 149 PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 149 ~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~-~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.+.+...|...+| ++||+|++..+++|+. .+...+++++.++|||||.+++..+.
T Consensus 115 ~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 115 SKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp CEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 4677778887766 7899999999998875 35689999999999999999997643
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=131.19 Aligned_cols=106 Identities=8% Similarity=-0.038 Sum_probs=80.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC-----CCCceeEEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-----YPRTYDLIHA 421 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~-----~p~s~Dlv~~ 421 (506)
.+......+|||+|||+|.++..|++++ ..|+++|.|+.|++.|.++.-...+..-.++++. .+++||+|.|
T Consensus 40 ~l~l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~ 116 (261)
T 3iv6_A 40 LENIVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLN 116 (261)
T ss_dssp TTTCCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred hcCCCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEE
Confidence 3444456789999999999999999986 4899999999999999987421111111123322 2479999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+.+|+++. ..++..+|.+|.|+| |||.++++-..
T Consensus 117 ~~~l~~~~-~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 117 DRLINRFT-TEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hhhhHhCC-HHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 99988654 335678999999999 99999997543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=131.76 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=99.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++ |+ .+...+.++..+ +++||+|+++.+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~~~~ 194 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVF 194 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEECSSG
T ss_pred CCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEccch
Confidence 45689999999999999999986 4899999999999988775 22 222233443332 5899999999999
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeCh--------------hhHHHHHHHHhcCCceEEEeecC---------CC
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------DEIIKVKKIVGGMRWDTKMVDHE---------DG 482 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------------~~~~~~~~~~~~~~w~~~~~~~~---------~~ 482 (506)
++.. ...+..+|.++.|+|||||.++|.... -..+++++++.. |++...+.. +|
T Consensus 195 ~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~g 271 (286)
T 3m70_A 195 MFLN-RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNENMGELHKTDENG 271 (286)
T ss_dssp GGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEECCEEEEEEECSSC
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEccCCeeeeccCCC
Confidence 8664 446778999999999999998874321 135678888876 887654322 22
Q ss_pred CC--CCeEEEEEEec
Q 010592 483 PL--VPEKILVAVKQ 495 (506)
Q Consensus 483 ~~--~~~~~l~~~k~ 495 (506)
.. -+...++|+|+
T Consensus 272 ~~~~~~~~~l~arK~ 286 (286)
T 3m70_A 272 NRIKMKFATMLARKK 286 (286)
T ss_dssp CEEEEEEEEEEEECC
T ss_pred CEEEEEEEEEEEecC
Confidence 21 13667888885
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=130.86 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=89.4
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp 161 (506)
.+.+.+...... .++.+|||||||+|.++..+++. .++++|+++.++..+..... ..+. .+.+...|...++
T Consensus 24 ~l~~~l~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~ 100 (276)
T 3mgg_A 24 TLEKLLHHDTVY--PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTE-KNGIKNVKFLQANIFSLP 100 (276)
T ss_dssp HHHHHHHTTCCC--CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEECCGGGCC
T ss_pred HHHHHHhhcccC--CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEcccccCC
Confidence 333344444332 34569999999999999999876 48899998876655444333 3333 5788888999999
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++++||+|+++.+++|+ +++..+++++.++|||||++++..+.
T Consensus 101 ~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 101 FEDSSFDHIFVCFVLEHL-QSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp SCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCeeEEEEechhhhc-CCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 999999999999999775 66789999999999999999998643
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=121.59 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=80.9
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++..+++. .++++|+++.++..+...... .+. .+.+...|...+++ +++||+|++..+++|+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~ 110 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSI-ENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFL 110 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGS
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHh-CCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhC
Confidence 459999999999999999987 488999988776555443333 333 57888889888888 7899999999999876
Q ss_pred CC-ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 180 GA-NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 180 ~~-~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.. +...+++++.++|||||++++..
T Consensus 111 ~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 111 EAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 43 44899999999999999988754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=127.03 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=85.4
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+...+...+.. .++.+|||||||+|.++..|++. .++++|+++.++..+..... ....+.+.+.|...++ ++
T Consensus 38 ~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 38 RHTQLLRLSLSS--GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTK--RWSHISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHHHHTTT--SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTT--TCSSEEEEECCTTTCC-CS
T ss_pred HHHHHHHHHccc--CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcc--cCCCeEEEEcchhhCC-CC
Confidence 343444445533 34558999999999999999987 47888887755543332221 1235788888988888 67
Q ss_pred CCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 165 RAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++||+|+|+.+++|+. ++ ..+++++.++|||||+|+++++..
T Consensus 113 ~~fD~v~~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLE-DMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp CCEEEEEEESCGGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CCccEEEEccHHHhCC-CHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8999999999998864 34 578999999999999999987654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=119.24 Aligned_cols=139 Identities=16% Similarity=0.124 Sum_probs=88.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCC-CCceeEEEEc-cc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-PRTYDLIHAH-GL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~-p~s~Dlv~~~-~~ 424 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++ |+ +...++-.+.++.+ +++||+|.++ ..
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 4579999999999999999874 6899999999999998876 33 22222223333323 4899999886 22
Q ss_pred ccccc-----CcCCHHHHHHHHhhhccCCcEEEEEeCh------hhHHHHHHHHhcC---CceEEEeecCCCCCCCeEEE
Q 010592 425 FSLYK-----DKCNIEDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGM---RWDTKMVDHEDGPLVPEKIL 490 (506)
Q Consensus 425 ~~~~~-----~~~~~~~~l~e~~RvLrPgG~~ii~d~~------~~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~l 490 (506)
+.... .......+|.++.|+|||||.+++..-. +..+.+.+.+..+ .|.+.....-.....+-.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLV 179 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEE
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEE
Confidence 22100 1123357899999999999999996432 2334555555544 48876554443322333444
Q ss_pred EEEe
Q 010592 491 VAVK 494 (506)
Q Consensus 491 ~~~k 494 (506)
+..|
T Consensus 180 ~i~~ 183 (185)
T 3mti_A 180 MLEK 183 (185)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-13 Score=131.18 Aligned_cols=133 Identities=15% Similarity=0.096 Sum_probs=95.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--cc----ceeccccccCCCCC-CceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LI----GIYHDWCEAFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~----~~~~~~~~~~~~~p-~s~Dlv~~~~~~ 425 (506)
..+|||+|||||+|+..|++.+. ..|+++|.+++||..+..+. +. ..+.... ...+| .+||+|.|+.+|
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~--~~~l~~~~fD~v~~d~sf 161 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAE--PVDFTEGLPSFASIDVSF 161 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCC--GGGCTTCCCSEEEECCSS
T ss_pred ccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecc--hhhCCCCCCCEEEEEeeH
Confidence 56899999999999999988752 58999999999999865432 10 1111111 11245 569999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeC--------------h--------hhHHHHHHHHhcCCceEEEeecC--C
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE--------------V--------DEIIKVKKIVGGMRWDTKMVDHE--D 481 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~--------------~--------~~~~~~~~~~~~~~w~~~~~~~~--~ 481 (506)
. .+..+|.|+.|+|||||.+++... . ...+++..++...+|.+...... .
T Consensus 162 ~------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~ 235 (291)
T 3hp7_A 162 I------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQ 235 (291)
T ss_dssp S------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred h------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 6 346799999999999999998511 0 15677888899999997744332 2
Q ss_pred C-CCCCeEEEEEEec
Q 010592 482 G-PLVPEKILVAVKQ 495 (506)
Q Consensus 482 ~-~~~~~~~l~~~k~ 495 (506)
| ..+.|+++.++|.
T Consensus 236 g~~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 236 GGHGNIEFLAHLEKT 250 (291)
T ss_dssp CGGGCCCEEEEEEEC
T ss_pred CCCcCHHHHHHhhhc
Confidence 2 2256888888873
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-13 Score=132.66 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=74.4
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc------ceeccccccCCCC--CCceeEEEEccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI------GIYHDWCEAFSTY--PRTYDLIHAHGLFS 426 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~------~~~~~~~~~~~~~--p~s~Dlv~~~~~~~ 426 (506)
+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++... ..+...+.++..+ +++||+|++...+.
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 161 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSI 161 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHHH
T ss_pred cEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCccc
Confidence 89999999999999999986 5799999999999999886210 1223334444444 58999999754433
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+..+..+...+|.++.|+|||||+|+|.+
T Consensus 162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 162 NELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp TTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 33333346889999999999999999954
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=127.24 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=83.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCCC---CCceeEEEEccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFSTY---PRTYDLIHAHGLFS 426 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~~---p~s~Dlv~~~~~~~ 426 (506)
...+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++-- .+ .+...+.++... +++||+|.++..|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 34589999999999999999975 489999999999998887521 00 112223333332 27999999998888
Q ss_pred cccC--cCCHHHHHHHHhhhccCCcEEEEEeCh--hhHHHHHHHHhc
Q 010592 427 LYKD--KCNIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVGG 469 (506)
Q Consensus 427 ~~~~--~~~~~~~l~e~~RvLrPgG~~ii~d~~--~~~~~~~~~~~~ 469 (506)
+... ......++.++.|+|||||.++|.... ++...+++.+..
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~ 356 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGA 356 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSC
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhcc
Confidence 5332 234568999999999999999996543 355666666553
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-13 Score=124.96 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=81.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
++.+|||||||+|.++..+ .. .++++|+++.++ +.++++...+.+...+...+|+++++||+|++..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~- 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAML-----AVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV- 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHH-----HHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTC-
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHH-----HHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhc-
Confidence 4569999999999999988 44 578888876544 444444355778888888999999999999999999775
Q ss_pred CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 181 ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 181 ~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++..+++++.++|||||.++++++..
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 578999999999999999999987654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.8e-13 Score=131.80 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=88.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~ 164 (506)
+.+.+.+.. ..++.+|||||||+|.++..|+++ .++++|+++.++..+..+ +...++ .+.+...|...+|+++
T Consensus 106 ~~l~~~l~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRR-ARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSCC-CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhcc-CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhcCCCCC
Confidence 345555541 234569999999999999999876 488999988766544433 334444 4888899999999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|++..+++|+ +...+++++.++|||||++++.++
T Consensus 184 ~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 184 GAVTASWNNESTMYV--DLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp TCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeEEEECCchhhC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999999886 389999999999999999999763
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-13 Score=132.18 Aligned_cols=102 Identities=20% Similarity=0.128 Sum_probs=82.5
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp-~~~~sfDlV~~~~~l~ 177 (506)
+.+|||||||+|.++..|++. .++++|+++.++..+.... ...+. .+.+...|...++ +++++||+|+|..+++
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 147 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAA-EAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE 147 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence 468999999999999999987 4888999886665444332 22333 4778888988887 7889999999999997
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
|+ +++..+++++.++|||||++++..+.
T Consensus 148 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 148 WV-ADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp GC-SCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cc-cCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 75 67899999999999999999998643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.41 E-value=8e-13 Score=129.63 Aligned_cols=141 Identities=11% Similarity=0.140 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHhh-hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccc
Q 010592 333 KWKKHVNAYKKINR-LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDW 405 (506)
Q Consensus 333 ~W~~~v~~y~~~~~-~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~ 405 (506)
.+......+..++. .....+..+|||+|||+|.++..|++.. ...+|+++|.++.|++.|.++ |+ +.....-
T Consensus 17 ~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d 95 (276)
T 3mgg_A 17 RLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN 95 (276)
T ss_dssp ------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred hHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcc
Confidence 33333333344333 2223445689999999999999998752 125899999999999988876 32 1112111
Q ss_pred cccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------------
Q 010592 406 CEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------------- 457 (506)
Q Consensus 406 ~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---------------------------- 457 (506)
.+.++..+++||+|++..+|.+. .++..+|.++.|+|||||+++|.+..
T Consensus 96 ~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (276)
T 3mgg_A 96 IFSLPFEDSSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMK 172 (276)
T ss_dssp GGGCCSCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCCCCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcC
Confidence 23344344899999999999844 46789999999999999999997621
Q ss_pred ---hhHHHHHHHHhcCCceEEEe
Q 010592 458 ---DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 458 ---~~~~~~~~~~~~~~w~~~~~ 477 (506)
.....+.+++++.+++....
T Consensus 173 ~~~~~~~~l~~~l~~aGf~~v~~ 195 (276)
T 3mgg_A 173 GNSLVGRQIYPLLQESGFEKIRV 195 (276)
T ss_dssp CCTTGGGGHHHHHHHTTCEEEEE
T ss_pred CCcchHHHHHHHHHHCCCCeEEE
Confidence 01256777889999986543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-13 Score=128.57 Aligned_cols=110 Identities=22% Similarity=0.336 Sum_probs=85.8
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.+.++ ++.+|||||||+|.++..|++.+ ++++|+++.++ +.++++.... +.+.|...++++++
T Consensus 44 ~~~~l~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l-----~~a~~~~~~~-~~~~d~~~~~~~~~ 113 (260)
T 2avn_A 44 IGSFLEEYLK----NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEML-----EVAREKGVKN-VVEAKAEDLPFPSG 113 (260)
T ss_dssp HHHHHHHHCC----SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHH-----HHHHHHTCSC-EEECCTTSCCSCTT
T ss_pred HHHHHHHhcC----CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHH-----HHHHhhcCCC-EEECcHHHCCCCCC
Confidence 3344455553 34589999999999999999874 77888876544 4444443322 77788888999899
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+||+|++..+++|+.+++..+++++.++|||||.+++..+..
T Consensus 114 ~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 114 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp CEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred CEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 999999998888887778999999999999999999987643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-12 Score=120.90 Aligned_cols=119 Identities=10% Similarity=0.043 Sum_probs=90.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--CceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~Dlv~ 420 (506)
+......+|||+|||+|.++..|++.+ ..|+++|.+++|++.|.++ |+...+...+.++.. ++ ..||+|+
T Consensus 51 l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~ 127 (204)
T 3njr_A 51 LAPRRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVF 127 (204)
T ss_dssp HCCCTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEE
T ss_pred cCCCCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEE
Confidence 344456789999999999999999874 6899999999999988875 332123333445444 22 5899999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEe
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~ 477 (506)
+...+ +.+ ++.++.|+|||||++++... .+...++.+++++.++++...
T Consensus 128 ~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 128 IGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp ECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred ECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEE
Confidence 85533 456 99999999999999999764 456777888888888876643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-13 Score=127.89 Aligned_cols=115 Identities=13% Similarity=0.195 Sum_probs=86.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
....+.+.+.+.. ..++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+ .+.+...|...++
T Consensus 29 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~d~~~~~ 105 (234)
T 3dtn_A 29 DDFYGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRF-RGNL-KVKYIEADYSKYD 105 (234)
T ss_dssp HHHHHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-CSCT-TEEEEESCTTTCC
T ss_pred HHHHHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhh-ccCC-CEEEEeCchhccC
Confidence 4444666666652 234569999999999999999876 4788888775543332221 1112 6788888999988
Q ss_pred CCCCCeeEEEEcCcccccCCChH--HHHHHHHHhcCCCeEEEEEcC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDG--RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~--~~l~e~~rvLkPGG~li~~~p 205 (506)
++ ++||+|++..+++|+ +++. .+++++.++|||||++++..+
T Consensus 106 ~~-~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 106 FE-EKYDMVVSALSIHHL-EDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp CC-SCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-CCceEEEEeCccccC-CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 87 899999999999886 3333 699999999999999999763
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-13 Score=135.32 Aligned_cols=145 Identities=10% Similarity=0.037 Sum_probs=95.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------------------cc-------------
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------------------IG------------- 400 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------------------~~------------- 400 (506)
...+|||+|||+|.++..++..+ ..+|+++|.|+.|++.|.++-- .+
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 45689999999999654444322 2489999999999998876310 01
Q ss_pred -----e-eccccccCCC----CC-CceeEEEEccccccccC-cCCHHHHHHHHhhhccCCcEEEEEeCh-----------
Q 010592 401 -----I-YHDWCEAFST----YP-RTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV----------- 457 (506)
Q Consensus 401 -----~-~~~~~~~~~~----~p-~s~Dlv~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~----------- 457 (506)
. ..+..+.++. ++ ++||+|.|+.+|++... ..++..+|.|+.|+|||||+|+|.+..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~ 228 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 228 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence 0 0021111221 22 67999999999986442 236788999999999999999996421
Q ss_pred -----hhHHHHHHHHhcCCceEEEeecC------CC--CCCCeEEEEEEecccc
Q 010592 458 -----DEIIKVKKIVGGMRWDTKMVDHE------DG--PLVPEKILVAVKQYWV 498 (506)
Q Consensus 458 -----~~~~~~~~~~~~~~w~~~~~~~~------~~--~~~~~~~l~~~k~~w~ 498 (506)
-..+++.+++.+.+|++...... .. ....-.+.+++|+-|.
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEECC-
T ss_pred eeeccCCHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEEEEEEecccc
Confidence 14688999999999986643221 11 1123455666666554
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.4e-13 Score=127.35 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=88.9
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+.+.+.+.+.....++.+|||||||+|.++..+++.+ ++++|+++.++..+.... ...+..+.+.+.|...++++
T Consensus 22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~- 99 (246)
T 1y8c_A 22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF-RSQGLKPRLACQDISNLNIN- 99 (246)
T ss_dssp HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEECCCGGGCCCS-
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH-hhcCCCeEEEecccccCCcc-
Confidence 34444444443222245699999999999999998874 888999887765554433 33344678888898888877
Q ss_pred CCeeEEEEcC-cccccC--CChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 165 RAFDMAHCSR-CLIPWG--ANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~-~l~~~~--~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|++.. +++|+. .+...+++++.++|||||+++++.+.
T Consensus 100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 8999999998 998863 34478999999999999999997654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-13 Score=126.15 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
++.+|||||||+|.++..|++.+ ++++|+++. +++.++++.. .+.+...|...++++ ++||+|+|..+++|
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSRE-----MRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHH 118 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHH-----HHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHH-----HHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence 34589999999999999999874 777777664 4444544433 567888899888888 89999999999977
Q ss_pred cCCChHH--HHHHHHHhcCCCeEEEEEcCC
Q 010592 179 WGANDGR--YMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 179 ~~~~~~~--~l~e~~rvLkPGG~li~~~p~ 206 (506)
+ +++.. +|+++.++|||||++++..+.
T Consensus 119 ~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 119 L-TDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp S-CHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred C-ChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 5 44544 999999999999999998643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-13 Score=129.76 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=86.9
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+.+.+.+.++. .++.+|||||||+|.++..+++.+ ++++|+++ .+++.++++. ++.+.+.|...+|+++
T Consensus 21 ~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~-~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNL--PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSI-----VMRQQAVVHP-QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCC--CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCH-----HHHHSSCCCT-TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCC--CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCH-----HHHHHHHhcc-CCEEEECchhhCCCCC
Confidence 455666666653 345599999999999999999874 77887766 3444444433 7888889999999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|+|..+++|+ .++..+++++.++|| ||++++..+
T Consensus 93 ~~fD~v~~~~~l~~~-~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 93 KSVDGVISILAIHHF-SHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp TCBSEEEEESCGGGC-SSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CCEeEEEEcchHhhc-cCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 999999999999886 678999999999999 998777654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.6e-13 Score=128.22 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=80.9
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEE
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~ 421 (506)
.++..+......+|||+|||+|.++..|++.. ...+|+++|.++.|++.+.++.. +.....-.+.++ .+++||+|++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 34444444556789999999999999998751 11479999999999999988731 122211123333 3489999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
..+|++. .++..+|.++.|+|||||+++|..
T Consensus 102 ~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 102 NAVFQWV---PDHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp ESCGGGS---TTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred eCchhhC---CCHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999854 478899999999999999999975
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-13 Score=131.95 Aligned_cols=105 Identities=8% Similarity=-0.050 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC-------eEEEEecc------ccC--CCC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP-------AVIGVLGT------IKM--PYA 163 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~-------~~~~~~d~------~~l--p~~ 163 (506)
.+.+|||||||+|..+..++.. .|+++|+|+.++..+...... .+.. +.+.+.+. ..+ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~-~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNK-LNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-HCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh-ccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3569999999999766655544 389999999888766654433 3322 34556655 323 466
Q ss_pred CCCeeEEEEcCcccccC--CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 164 SRAFDMAHCSRCLIPWG--ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~--~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++||+|+|.+++++.. .+...+++++.++|||||+|+++++..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 78999999999886532 234799999999999999999987643
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=129.07 Aligned_cols=129 Identities=11% Similarity=0.069 Sum_probs=97.3
Q ss_pred HHHhhhcC-CCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC---
Q 010592 342 KKINRLLD-SGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--- 412 (506)
Q Consensus 342 ~~~~~~~~-~~~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--- 412 (506)
..++..+. .....+|||+|||+|.++..|++. + .+|+++|.++.|++.|.++ |+...+...+.++..+
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 182 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD 182 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence 34455454 455678999999999999999886 4 5899999999999988875 3322233334444333
Q ss_pred CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------------hhHHHHHHHHhc
Q 010592 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------DEIIKVKKIVGG 469 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------~~~~~~~~~~~~ 469 (506)
+++||+|++..+|.+. ++..+|.++.|+|||||+++|.+.. ...+++.+++++
T Consensus 183 ~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~ 258 (312)
T 3vc1_A 183 KGAVTASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMAD 258 (312)
T ss_dssp TTCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHT
T ss_pred CCCEeEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 3899999999988854 3889999999999999999996521 034678889999
Q ss_pred CCceEEEe
Q 010592 470 MRWDTKMV 477 (506)
Q Consensus 470 ~~w~~~~~ 477 (506)
.+|++...
T Consensus 259 aGf~~~~~ 266 (312)
T 3vc1_A 259 NRLVPHTI 266 (312)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99986543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=130.53 Aligned_cols=113 Identities=12% Similarity=0.165 Sum_probs=88.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh---C--CcEEEecCccchHHHHHHHHHH--cCCCeEEEEeccc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---R--NVIAMSFAPRDSHEAQVQFALE--RGVPAVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---~--~v~~vdis~~di~~~~~~~a~~--~~~~~~~~~~d~~ 158 (506)
..+.+.+.+... .++.+|||||||+|.++..|++ . .++++|+++.++..+....... ....+.+.+.|+.
T Consensus 23 ~~~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 23 SDFYKMIDEYHD---GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHHCC---SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHHhc---CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 344455666543 2456999999999999999994 3 4889999887765554433332 1456888999999
Q ss_pred cCCCCC------CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 159 KMPYAS------RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 159 ~lp~~~------~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+++++ ++||+|+|+.+++|+ +...+++++.++|||||+|++.
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEE
Confidence 888877 899999999999776 7899999999999999999984
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-13 Score=124.50 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||||||+|.++..+++.+ ++++|+++.++. .++++. .+.+...+...++ ++++||+|+|+.+++|+
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~-----~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 115 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAA-----EASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHV 115 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHH-----HHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHH-----HHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhc
Confidence 34599999999999999999874 788888775443 333331 3445567888888 78899999999999886
Q ss_pred CC-ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 180 GA-NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~-~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. +...+++++.++|||||+++++.+..
T Consensus 116 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 116 PRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 52 34799999999999999999986544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=125.97 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=83.1
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC------CeEEEEeccc
Q 010592 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV------PAVIGVLGTI 158 (506)
Q Consensus 89 ~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~------~~~~~~~d~~ 158 (506)
.+.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++..+..+.. ..+. .+.+.+.|..
T Consensus 18 ~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 18 MNGVVAALKQS--NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD-RLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp HHHHHHHHHHT--TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHT-TCCCCHHHHTTEEEEECCTT
T ss_pred HHHHHHHHHhc--CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHH-HhcCCcccCcceEEEeCCcc
Confidence 34455555322 3459999999999999999875 48899998866654443322 2222 5778888887
Q ss_pred cCCCCCCCeeEEEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEEc
Q 010592 159 KMPYASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 159 ~lp~~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++.+.++||+|+|..+++|+ +++ ..+++++.++|||||+++++.
T Consensus 95 ~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 95 YQDKRFHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp SCCGGGCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccccCCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 777777899999999999886 434 789999999999999777653
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=124.52 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=87.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
+.+.+.+.+.++ .+.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+..+.+...|...++++
T Consensus 26 ~~~~~~l~~~~~----~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~ 100 (227)
T 1ve3_A 26 ETLEPLLMKYMK----KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYA-KSRESNVEFIVGDARKLSFE 100 (227)
T ss_dssp HHHHHHHHHSCC----SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCTTSCCSC
T ss_pred HHHHHHHHHhcC----CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEECchhcCCCC
Confidence 444455555552 2459999999999999999887 4889999887665444333 33346678888898888888
Q ss_pred CCCeeEEEEcCccccc-CCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 164 SRAFDMAHCSRCLIPW-GANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~-~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++||+|+++.++++. ..+...+++++.++|||||.+++..+.
T Consensus 101 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 101 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 8899999999884332 234578999999999999999998653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=128.37 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=93.7
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-- 148 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~-- 148 (506)
|+.....+.......++.+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...++
T Consensus 46 ~~~~~~~l~~a~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~ 122 (302)
T 3hem_A 46 FERPDMTLEEAQYAKRKLALDKLNLE--PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMF-DEVDSPR 122 (302)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHH-HHSCCSS
T ss_pred ecCCCCCHHHHHHHHHHHHHHHcCCC--CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH-HhcCCCC
Confidence 33334445555566777777777544 4459999999999999999876 4889999887665444333 33444
Q ss_pred CeEEEEeccccCCCCCCCeeEEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 149 PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 149 ~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+.+...|...+ +++||+|+++.+++|+.+. ...+++++.++|||||++++.+.
T Consensus 123 ~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 123 RKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp CEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred ceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 377788888766 6899999999999886331 16999999999999999999764
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-13 Score=130.09 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=91.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEcccccc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~ 427 (506)
+......+|||+|||+|.++..|++.+ .+|+++|.|+.|++.+.++..+.....-.++++..+++||+|++.+++++
T Consensus 30 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 106 (261)
T 3ege_A 30 LNLPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHH 106 (261)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGG
T ss_pred hCCCCCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhh
Confidence 334456789999999999999999865 58999999999999887775222332223445544489999999999985
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------------------hhHHHHHHHHhcCCceEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------~~~~~~~~~~~~~~w~~~~ 476 (506)
. .++..+|.|+.|+|| ||+++|.+.. ...+.+. ++.+.+++...
T Consensus 107 ~---~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~ 174 (261)
T 3ege_A 107 F---SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVE 174 (261)
T ss_dssp C---SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEE
T ss_pred c---cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCcee
Confidence 4 578899999999999 9988885422 0335577 88888887443
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-13 Score=132.08 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=86.3
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCce
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTY 416 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~ 416 (506)
..++..+...+..+|||+|||+|.++..|++. + .+|+++|.++.|++.|.++ |+...+...+.++..+|++|
T Consensus 80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 33444444455678999999999999999875 4 4899999999999999886 33222333345555567999
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
|+|++..+|.+... .++..+|.++.|+|||||.++|.+.
T Consensus 157 D~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 157 DRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp SEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999999986642 4678999999999999999999653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=128.14 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=88.8
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
.+++.+.+.+.. ..++.+|||||||+|.++..+++. .++++|+++.++..+... +...+.++.+.+.|...++
T Consensus 8 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~~~ 85 (284)
T 3gu3_A 8 DYVSFLVNTVWK-ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL-FRLLPYDSEFLEGDATEIE 85 (284)
T ss_dssp HHHHHHHHTTSC-CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHH-HHSSSSEEEEEESCTTTCC
T ss_pred HHHHHHHHHHhc-cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEEcchhhcC
Confidence 344445555421 134569999999999999999875 488999988666444332 2333446788889998888
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++ ++||+|++..+++|+ +++..+++++.++|||||++++..+.
T Consensus 86 ~~-~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 LN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cC-CCeeEEEECChhhcC-CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 84 699999999998775 66799999999999999999998876
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=122.29 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=98.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CCCceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p~s~Dlv~~~~~~~~ 427 (506)
..+|||+|||+|.++..|++.+. .+|+++|.++.|++.|.++ ++.. +...+.++.. .+++||+|+++..+.+
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred CCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccCCCCceEEEECCcHHH
Confidence 46899999999999999988652 4899999999999998876 3321 2333344433 3499999999776652
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+..+|.++.|+|||||++++.+.. ...+.+.+++.+.+|+....... +.+..++.+++
T Consensus 138 ------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~----~~w~~~~~~~~ 196 (205)
T 3grz_A 138 ------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRA----GRWIGLAISRK 196 (205)
T ss_dssp ------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEE----TTEEEEEEEEC
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeecc----CCEEEEEEecc
Confidence 467999999999999999997643 46778899999999997654443 25666666654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-13 Score=134.93 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=77.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c------cceeccccccCC---CCCCceeE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L------IGIYHDWCEAFS---TYPRTYDL 418 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~------~~~~~~~~~~~~---~~p~s~Dl 418 (506)
+..+|||+|||+|.++..|++.+ .+|+++|.|+.|++.|.++. . +.....-...++ ..+++||+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 45689999999999999999986 38999999999999997642 1 001111011222 33489999
Q ss_pred EEEc-cccccccC----cCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 419 IHAH-GLFSLYKD----KCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 419 v~~~-~~~~~~~~----~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
|+|. ++|.|+.+ ......+|.++.|+|||||+++|...
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9998 89986664 23378999999999999999999654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=126.54 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=85.3
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
....+.+.+...++ ++.+|||||||+|.++..|++.+ ++++|+++. +++.++++...+.+.+.|+..++
T Consensus 36 ~~~~~~~~l~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~d~~~~~ 106 (263)
T 3pfg_A 36 EAADLAALVRRHSP----KAASLLDVACGTGMHLRHLADSFGTVEGLELSAD-----MLAIARRRNPDAVLHHGDMRDFS 106 (263)
T ss_dssp HHHHHHHHHHHHCT----TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHH-----HHHHHHHHCTTSEEEECCTTTCC
T ss_pred HHHHHHHHHHhhCC----CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHH-----HHHHHHhhCCCCEEEECChHHCC
Confidence 33444455555442 34589999999999999999874 778887664 44555555556788889998888
Q ss_pred CCCCCeeEEEEcC-cccccCC--ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSR-CLIPWGA--NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~-~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+ +++||+|+|.. +++|+.. +...+|+++.++|||||+|++..
T Consensus 107 ~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 107 L-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp C-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred c-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7 78999999998 8877642 34688999999999999999974
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=126.97 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=78.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
...+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++........-.+.++..+++||+|.+..++.++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-- 128 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV-- 128 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC--
T ss_pred CCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcc--
Confidence 45689999999999999999875 4899999999999999988541122111223443348999999987666443
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEeChh
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRDEVD 458 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~~~ 458 (506)
.++..+|.|+.|+|||||.++|.....
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 248899999999999999999976553
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=120.78 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=75.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCCCceeEEEEccccccccC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
...+|||+|||+|.++..| +. .+|+++|.++.|++.+.++. -+.....-.+.++..+++||+|++.+++++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-- 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV-- 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTC--
T ss_pred CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhc--
Confidence 4668999999999999888 21 27999999999999999873 1222221123344334799999999998854
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.++..+|.|+.|+|||||.++|.+..
T Consensus 109 -~~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 109 -EDVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CCHHHHHHHHHHHcCCCCEEEEEecC
Confidence 47889999999999999999998643
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-13 Score=134.14 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=76.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-----------e-ecccc-----ccCC-CCC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-----------I-YHDWC-----EAFS-TYP 413 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-----------~-~~~~~-----~~~~-~~p 413 (506)
..+|||||||+|+.+..++..+. .+|+++|.|+.||+.|.+|.. .+ . ..+.+ +.++ .++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46899999999987666665542 479999999999999998731 11 0 11111 1122 133
Q ss_pred -CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 414 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 414 -~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++||+|.|..++++..+..+...+|.++.|+|||||+|+++...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999999988876544446789999999999999999998765
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=122.97 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=94.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-ceecccccc---CCCCCCceeEEEEcccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-GIYHDWCEA---FSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~~~~~~~~~---~~~~p~s~Dlv~~~~~~~~ 427 (506)
...+|||+|||+|.++..|++.+.. +|+++|.++.|++.+.++... ..+...+.+ ++..+++||+|.+..+|.+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 3457999999999999999987632 899999999999999887310 111112233 3323389999999888875
Q ss_pred cc------------CcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhc--CCceEEEeecCCCCCCCeEEEEEE
Q 010592 428 YK------------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGG--MRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 428 ~~------------~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
.. +..++..+|.++.|+|||||.+++.+.... ...+.++.. ..|........++. ..++.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 196 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLRHATYGSGF--HFHLYLMH 196 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEEEEEESGGG--CEEEEEEE
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEEEEEecCcc--eEEEEEEE
Confidence 43 122557899999999999999999887642 223344433 35776554444332 44556666
Q ss_pred e
Q 010592 494 K 494 (506)
Q Consensus 494 k 494 (506)
|
T Consensus 197 ~ 197 (215)
T 2pxx_A 197 K 197 (215)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=125.78 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=77.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccc---cCCCCCCceeEEEEcccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCE---AFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~---~~~~~p~s~Dlv~~~~~~ 425 (506)
....+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++. ....+...+. .++..+++||+|++..+|
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 345689999999999999999875 58999999999999998872 1111222223 344334899999999998
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++.. +...+|.++.|+|||||++++.
T Consensus 115 ~~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 8544 6789999999999999999985
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=116.55 Aligned_cols=121 Identities=14% Similarity=0.107 Sum_probs=89.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc---ceeccccccCCCCCCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~---~~~~~~~~~~~~~p~s~Dlv~ 420 (506)
+......+|||+|||+|.++..+++.. ...+|+++|.++.|++.|.++ |+. ....+..+.++..+++||+|+
T Consensus 21 ~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~ 99 (178)
T 3hm2_A 21 LAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIF 99 (178)
T ss_dssp HCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEE
T ss_pred hcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEE
Confidence 344556789999999999999998862 237899999999999999875 332 111122233443448999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~ 476 (506)
++..+.+ ..+|.++.|+|||||++++.+.. +....+..+++..++++..
T Consensus 100 ~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 100 IGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp ECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEE
T ss_pred ECCcccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEE
Confidence 9888764 45999999999999999998754 4666777777777776553
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-13 Score=132.77 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=87.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc----CCCeEEEEecccc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER----GVPAVIGVLGTIK 159 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~----~~~~~~~~~d~~~ 159 (506)
..+.+.+.+.++.. ++.+|||||||+|.++..|++.+ ++++|+++.++..+..+..... ...+.+...+...
T Consensus 43 ~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 43 AEYKAWLLGLLRQH--GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHhccc--CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 33444455555322 34589999999999999999884 7899998877655543332211 1245677778877
Q ss_pred CC---CCCCCeeEEEEc-CcccccCC------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 160 MP---YASRAFDMAHCS-RCLIPWGA------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 lp---~~~~sfDlV~~~-~~l~~~~~------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++ +++++||+|+|. .+++|+.+ +...+++++.++|||||+|+++.+..
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 77 788999999998 78877643 15899999999999999999987643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=129.15 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=93.2
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEcc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHG 423 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~ 423 (506)
......+|||+|||+|++++.+..+ .....|+++|.+++|++.|+++ |+ ..+...+.+...+| ++||+|++..
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~-~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a 196 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSH-VYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAA 196 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHH-TTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECT
T ss_pred CCCCcCEEEEECCCccHHHHHHHHH-ccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECC
Confidence 3345678999999999887665432 1136899999999999999886 55 44444455555555 8999999854
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHH----HHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIK----VKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
+ ..+.+.++.|+.|+|||||+|++++....... +.. ...-+|+.....+-.+. ....+++++|
T Consensus 197 ~------~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p~~~-v~N~vv~a~k 263 (298)
T 3fpf_A 197 L------AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLPSGK-VNNTSVLVFK 263 (298)
T ss_dssp T------CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECCCTT-CCCEEEEEEE
T ss_pred C------ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECCCCC-cCcEEEEEEc
Confidence 3 24778999999999999999999875431110 000 12237887665554333 2355777777
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=119.71 Aligned_cols=143 Identities=13% Similarity=0.027 Sum_probs=97.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|++.-....+|+++|.++.|++.|.++ |+...+...+.+ ++ ..+++||+|.++..
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 45899999999999999887410114899999999999988876 221222222333 43 33489999999765
Q ss_pred ccc-c-----cCcCCHHHHHHHHhhhccCCcEEEEEeCh------hhHHHHHHHHhcC---CceEEEeecCCCCCCCeEE
Q 010592 425 FSL-Y-----KDKCNIEDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGM---RWDTKMVDHEDGPLVPEKI 489 (506)
Q Consensus 425 ~~~-~-----~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------~~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~ 489 (506)
+-. . .+..+...+|.++.|+|||||++++.+-. .....+.+.+..+ +|.+...........+-++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp~~ 182 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPIL 182 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCCEE
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCCeE
Confidence 511 0 01113457999999999999999997522 1445566666554 5888776665555556777
Q ss_pred EEEEec
Q 010592 490 LVAVKQ 495 (506)
Q Consensus 490 l~~~k~ 495 (506)
++.+|.
T Consensus 183 ~~~~~~ 188 (197)
T 3eey_A 183 VCIEKI 188 (197)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 777775
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-12 Score=121.83 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=96.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCC---CCCceeEEEEc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST---YPRTYDLIHAH 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~---~p~s~Dlv~~~ 422 (506)
...+|||+|||+|.++..|+... ....|+++|.++.|++.|.++ |+ +..++.-.++++. .+++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 34689999999999988888421 125799999999999988764 33 2222222233433 25799999994
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh---hhHHHHHHHHhcCCceEEEeec--CCCCCCCeEEEEEEeccc
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---DEIIKVKKIVGGMRWDTKMVDH--EDGPLVPEKILVAVKQYW 497 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~l~~~k~~w 497 (506)
. ..++..++.++.|+|||||++++.+.. +.+.++.+.++..++++..... .........+++++|.-.
T Consensus 149 ~-------~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~~ 221 (240)
T 1xdz_A 149 A-------VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKN 221 (240)
T ss_dssp C-------CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSC
T ss_pred c-------cCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecCC
Confidence 4 246889999999999999999997643 3455677778889998654322 111223466777787655
Q ss_pred cc
Q 010592 498 VA 499 (506)
Q Consensus 498 ~~ 499 (506)
++
T Consensus 222 ~~ 223 (240)
T 1xdz_A 222 TP 223 (240)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=121.23 Aligned_cols=121 Identities=11% Similarity=0.102 Sum_probs=92.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccc-cCCCCCCceeEEEEcccccccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE-AFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~-~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
....+|||+|||+|.++..|++.+ .+++++|.++.|++.+.++...-...+..+ ..+..+++||+|++..++++.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~- 106 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHL- 106 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGS-
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhc-
Confidence 446789999999999999999875 689999999999999988753111111111 122223899999999999854
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEEeCh------------------------------hhHHHHHHHHhcCCceEEEe
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIRDEV------------------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
.++..+|.++.|+|||||.+++.... -..+++.+++.+.++++...
T Consensus 107 --~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 182 (230)
T 3cc8_A 107 --FDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKV 182 (230)
T ss_dssp --SCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred --CCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEE
Confidence 46789999999999999999997532 13577888899999986644
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=126.24 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=86.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++ +.++++...+.+...|...++ +++
T Consensus 23 ~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~~~~d~~~~~-~~~ 94 (259)
T 2p35_A 23 RDLLAQVPLE--RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML-----EKAADRLPNTNFGKADLATWK-PAQ 94 (259)
T ss_dssp HHHHTTCCCS--CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHH-----HHHHHHSTTSEEEECCTTTCC-CSS
T ss_pred HHHHHhcCCC--CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHhCCCcEEEECChhhcC-ccC
Confidence 3455665433 3458999999999999998865 588998877544 444444556788888998888 788
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+++.+++|+ ++...+++++.++|||||++++..+.
T Consensus 95 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 95 KADLLYANAVFQWV-PDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp CEEEEEEESCGGGS-TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CcCEEEEeCchhhC-CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99999999998664 67899999999999999999998754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=123.37 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=78.4
Q ss_pred CEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHH-cCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 104 RTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~-~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
.+|||||||+|.++..|++.+ ++++|+++.++..+....... ....+.+.+.|...++ ++++||+|++..+++++.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 146 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIE 146 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSC
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCC
Confidence 489999999999999998874 788888776554433322210 1123778888888877 456999999999998764
Q ss_pred C-ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 181 A-NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 181 ~-~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +...+++++.++|||||+|++...+.
T Consensus 147 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 147 PEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp GGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 3 44899999999999999999976544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=129.77 Aligned_cols=122 Identities=11% Similarity=0.134 Sum_probs=83.2
Q ss_pred CCceEEeecCcccHHHHH----HHhC-CCeEEEEeecCCCcccHHHHHhc-----Cccce-ecc---ccccCC------C
Q 010592 352 RYRNIMDMNAGFGGFAAA----IQSS-KLWVMNVVPTLADKNTLGVIYER-----GLIGI-YHD---WCEAFS------T 411 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~----l~~~-~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~-~~~---~~~~~~------~ 411 (506)
+..+|||||||+|.++.. +... +.....++++|.|++|++.|.++ ++... ... -.++++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 455899999999986543 3332 11123459999999999998876 22111 111 112232 2
Q ss_pred CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------hHHHHHHHH
Q 010592 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------EIIKVKKIV 467 (506)
Q Consensus 412 ~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------~~~~~~~~~ 467 (506)
.+++||+|+|..+|++ ..++..+|.||.|+|||||+|+|..... ..+++.+++
T Consensus 132 ~~~~fD~V~~~~~l~~---~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYY---VKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQML 208 (292)
T ss_dssp CCCCEEEEEEESCGGG---CSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHH
T ss_pred CCCceeEEEEeeeeee---cCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHH
Confidence 3589999999999994 4578999999999999999999953211 234667777
Q ss_pred hcCCceEEE
Q 010592 468 GGMRWDTKM 476 (506)
Q Consensus 468 ~~~~w~~~~ 476 (506)
.+.++++..
T Consensus 209 ~~aGf~~~~ 217 (292)
T 2aot_A 209 DNLGLKYEC 217 (292)
T ss_dssp HHHTCCEEE
T ss_pred HHCCCceEE
Confidence 778877543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.5e-12 Score=118.05 Aligned_cols=146 Identities=16% Similarity=0.068 Sum_probs=101.8
Q ss_pred CCChhhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----
Q 010592 321 GVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---- 396 (506)
Q Consensus 321 ~~~~~~f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---- 396 (506)
|...+.|..+...-+..+.. .++..+......+|||+|||+|.++..|++.+ ...+|+++|.++.|++.|.++
T Consensus 11 g~~d~~f~~~g~~~~~~i~~--~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~ 87 (204)
T 3e05_A 11 IDDDEFATAKKLITKQEVRA--VTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKF 87 (204)
T ss_dssp CCGGGSCCCTTTSCCHHHHH--HHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCCcHHhccCCcCChHHHHH--HHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 44445555544432223322 23333444556789999999999999998753 125899999999999998875
Q ss_pred CccceeccccccCC-CCC--CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCc
Q 010592 397 GLIGIYHDWCEAFS-TYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRW 472 (506)
Q Consensus 397 g~~~~~~~~~~~~~-~~p--~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w 472 (506)
|+ ..+...+.++. .++ .+||+|++...+. ++..+|.++.|+|||||.+++.+.. ...+.+.+++++.+|
T Consensus 88 ~~-~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 88 VA-RNVTLVEAFAPEGLDDLPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp TC-TTEEEEECCTTTTCTTSCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred CC-CcEEEEeCChhhhhhcCCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 33 22223334442 222 7899999966553 6788999999999999999998654 577888889999998
Q ss_pred eEEE
Q 010592 473 DTKM 476 (506)
Q Consensus 473 ~~~~ 476 (506)
++..
T Consensus 161 ~~~~ 164 (204)
T 3e05_A 161 MVEV 164 (204)
T ss_dssp EEEE
T ss_pred ceeE
Confidence 6543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=127.50 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||||||+|.++..+++. .++++|+++.++ +.++++...+.+.+.|...+|+ +++||+|++..+++|
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~- 129 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMI-----EKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHW- 129 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHH-----HHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGG-
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHH-----HHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhh-
Confidence 4459999999999999999876 478888876544 4444443456788889888887 579999999999866
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..++..+++++.++|||||++++..+..
T Consensus 130 ~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 130 VKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 4678999999999999999999987543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=122.25 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=84.4
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASR 165 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~ 165 (506)
.+.+.++.. ++.+|||||||+|.++..+++. .++++|+++. +++.++++.. .+.+...|...++++++
T Consensus 34 ~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 106 (243)
T 3bkw_A 34 ALRAMLPEV--GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK-----MLARARAAGPDTGITYERADLDKLHLPQD 106 (243)
T ss_dssp HHHHHSCCC--TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTSCSSSEEEEECCGGGCCCCTT
T ss_pred HHHHhcccc--CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHH-----HHHHHHHhcccCCceEEEcChhhccCCCC
Confidence 355555432 3459999999999999999886 3677777654 4455554432 46788888888888889
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||+|++..+++|+ ++...+++++.++|||||+++++.+
T Consensus 107 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 107 SFDLAYSSLALHYV-EDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp CEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEecccccc-chHHHHHHHHHHhcCcCcEEEEEeC
Confidence 99999999998775 5689999999999999999999864
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=143.85 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=89.2
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEE---Ee
Q 010592 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIG---VL 155 (506)
Q Consensus 81 f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~---~~ 155 (506)
+......+.+.+.+.+... ++.+|||||||+|.++..|++++ ++++|+++ .+++.|++++.+.... ..
T Consensus 88 ~~~~~~~~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~~~~ 160 (416)
T 4e2x_A 88 MREHFAMLARDFLATELTG--PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSS-----GVAAKAREKGIRVRTDFFEKA 160 (416)
T ss_dssp HHHHHHHHHHHHHHTTTCS--SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCH-----HHHHHHHTTTCCEECSCCSHH
T ss_pred HHHHHHHHHHHHHHHhCCC--CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCH-----HHHHHHHHcCCCcceeeechh
Confidence 4444566667777777543 45599999999999999999885 56666654 5566677666554321 22
Q ss_pred ccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 156 GTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 156 d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+...+|+++++||+|++..+++|+ +++..+++++.++|||||+|++..+.
T Consensus 161 ~~~~l~~~~~~fD~I~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 161 TADDVRRTEGPANVIYAANTLCHI-PYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp HHHHHHHHHCCEEEEEEESCGGGC-TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHhhcccCCCCEEEEEECChHHhc-CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 334567778899999999999886 57899999999999999999998765
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=128.69 Aligned_cols=123 Identities=14% Similarity=0.169 Sum_probs=91.8
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEE
Q 010592 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIG 153 (506)
Q Consensus 79 ~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~ 153 (506)
..+.......++.+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+. .+.+.
T Consensus 69 ~~l~~~~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~ 145 (318)
T 2fk8_A 69 LTLEEAQYAKVDLNLDKLDLK--PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVL-ASIDTNRSRQVL 145 (318)
T ss_dssp CCHHHHHHHHHHHHHTTSCCC--TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTSCCSSCEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCC--CcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEE
Confidence 344444566667777777543 4459999999999999999876 4888888876664443322 23343 36777
Q ss_pred EeccccCCCCCCCeeEEEEcCcccccC-CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 154 VLGTIKMPYASRAFDMAHCSRCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 154 ~~d~~~lp~~~~sfDlV~~~~~l~~~~-~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..|...+| ++||+|++..+++|+. ++...+++++.++|||||.+++..+..
T Consensus 146 ~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 146 LQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp ESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred ECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 78887775 7899999999998875 355899999999999999999986543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=121.86 Aligned_cols=100 Identities=18% Similarity=0.129 Sum_probs=78.9
Q ss_pred EEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC-C
Q 010592 105 TALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG-A 181 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~-~ 181 (506)
+|||||||+|.++..+++. .++++|+++.++..+.... ...+..+.+...|...+++++++||+|+++. .|+. .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA-QEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH-HHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH-HhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHH
Confidence 8999999999999999987 4788888876665444333 3335578888888888888889999999964 3442 3
Q ss_pred ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 182 NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 182 ~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+...+++++.++|||||++++..+..
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 44789999999999999999987544
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=122.90 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~-~~~~~~~~d~~~lp~~~~s 166 (506)
..+.+.+... .++.+|||||||+|.++..+++. .++++|+++. +++.+++.+ ..+.+...|...+ +++++
T Consensus 35 ~~~~~~l~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~-----~~~~a~~~~~~~~~~~~~d~~~~-~~~~~ 107 (218)
T 3ou2_A 35 PAALERLRAG-NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAE-----MIAEAGRHGLDNVEFRQQDLFDW-TPDRQ 107 (218)
T ss_dssp HHHHHHHTTT-TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHH-----HHHHHGGGCCTTEEEEECCTTSC-CCSSC
T ss_pred HHHHHHHhcC-CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH-----HHHHHHhcCCCCeEEEecccccC-CCCCc
Confidence 3444444321 23459999999999999999886 4778888764 444454455 5578888888877 77899
Q ss_pred eeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 167 FDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|+|+.+++|+.+. ...+++++.++|||||.+++..+
T Consensus 108 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 108 WDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999999886432 17899999999999999999864
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=125.42 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=91.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc------ceecccc-ccCCCCCCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI------GIYHDWC-EAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~------~~~~~~~-~~~~~~p~s~Dlv~~~~~~ 425 (506)
..+|||+|||||.++..|++.+. ..|+++|.|++|++.|.++... ..+...+ ++++. ..||.+.++.+|
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~ 113 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSF 113 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSS
T ss_pred CCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEh
Confidence 45899999999999999998753 3899999999999998775321 1121111 33332 124555555555
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEe-------------------Ch---hhHHHHHHHHhcCCceEEEeecC--C
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD-------------------EV---DEIIKVKKIVGGMRWDTKMVDHE--D 481 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-------------------~~---~~~~~~~~~~~~~~w~~~~~~~~--~ 481 (506)
.. +..+|.|+.|+|||||++++.. .. ...+++.+++.+.+|++...+.. .
T Consensus 114 ~~------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~ 187 (232)
T 3opn_A 114 IS------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIK 187 (232)
T ss_dssp SC------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSC
T ss_pred hh------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCC
Confidence 42 2669999999999999999851 11 14567888899999997755433 1
Q ss_pred C-CCCCeEEEEEEec
Q 010592 482 G-PLVPEKILVAVKQ 495 (506)
Q Consensus 482 ~-~~~~~~~l~~~k~ 495 (506)
| ..+.++++.++|+
T Consensus 188 g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 188 GGAGNVEFLVHLLKD 202 (232)
T ss_dssp BTTTBCCEEEEEEES
T ss_pred CCCCCHHHHHHHhhc
Confidence 1 2246888888884
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.2e-12 Score=118.46 Aligned_cols=133 Identities=14% Similarity=0.049 Sum_probs=81.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH----HHHhcCccceeccccccCC------CCCCceeEEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCEAFS------TYPRTYDLIH 420 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~~~~~~~~~~~------~~p~s~Dlv~ 420 (506)
.+..+|||+|||+|.++..|++... ...|+++|.|+.|++ .|..+..+.. .+.+.. .++++||+|.
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~---~~~d~~~~~~~~~~~~~fD~V~ 131 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIP---LLFDASKPWKYSGIVEKVDLIY 131 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEE---ECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEE---EEcCCCCchhhcccccceeEEE
Confidence 3456899999999999999887532 247999999997654 4444421111 122221 2348999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh------hhHHH-----HHHHHhcCCceEEEeecCCCCCCCeEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------DEIIK-----VKKIVGGMRWDTKMVDHEDGPLVPEKI 489 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------~~~~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~ 489 (506)
++. .+......+|.|+.|+|||||+|+|.-.. ...++ ++. +++. |++........-...-++
T Consensus 132 ~~~-----~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-l~~~-f~~~~~~~~~p~~~~h~~ 204 (210)
T 1nt2_A 132 QDI-----AQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKE-MEGD-FKIVKHGSLMPYHRDHIF 204 (210)
T ss_dssp ECC-----CSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHH-HHTT-SEEEEEEECTTTCTTEEE
T ss_pred Eec-----cChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHH-HHhh-cEEeeeecCCCCCCCcEE
Confidence 962 12233445699999999999999996311 11122 233 5666 886543222111124567
Q ss_pred EEEEe
Q 010592 490 LVAVK 494 (506)
Q Consensus 490 l~~~k 494 (506)
++++|
T Consensus 205 ~~~~~ 209 (210)
T 1nt2_A 205 IHAYR 209 (210)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77765
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=121.13 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
....+.+.+.+.+ .++.+|||+|||+|.++..+++. .++++|+++.++..+..... ....+.+.+.|...+
T Consensus 28 ~~~~~~~~l~~~~----~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~--~~~~i~~~~~d~~~~ 101 (215)
T 2pxx_A 28 DFSSFRALLEPEL----RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA--HVPQLRWETMDVRKL 101 (215)
T ss_dssp CHHHHHHHHGGGC----CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTT--TCTTCEEEECCTTSC
T ss_pred CHHHHHHHHHHhc----CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcc--cCCCcEEEEcchhcC
Confidence 3455656666665 23458999999999999999876 48889988765543332221 123577888898888
Q ss_pred CCCCCCeeEEEEcCcccccC--------------CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 PYASRAFDMAHCSRCLIPWG--------------ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~--------------~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++++++||+|++..++.++. .+...+++++.++|||||.+++.++..
T Consensus 102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 98889999999988775543 133789999999999999999987654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-12 Score=114.61 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=85.9
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~---~~~~~~d~~~lp 161 (506)
...+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+..... ..+.+ +.+...|... +
T Consensus 39 ~~~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~ 114 (194)
T 1dus_A 39 KGTKILVENVVVD--KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIK-LNNLDNYDIRVVHSDLYE-N 114 (194)
T ss_dssp HHHHHHHHHCCCC--TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-HTTCTTSCEEEEECSTTT-T
T ss_pred hHHHHHHHHcccC--CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHH-HcCCCccceEEEECchhc-c
Confidence 4445566666443 4559999999999999999876 48899998876655444333 33443 6777777765 4
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++++||+|+++..+++...+...+++++.++|+|||.+++..+..
T Consensus 115 ~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 4577899999988764422334789999999999999999987644
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=121.16 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=80.4
Q ss_pred CCEEEEECCCCChhH-HHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWG-AYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~-~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++ ..++.. .++++|+++.++..+.... ...+..+.+.+.|...+++++++||+|++..+++|+
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 102 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFS-RENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHM 102 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHH-HHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGS
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH-HhcCCceEEEECchhhCCCCCCceeEEEEcChHHhC
Confidence 458999999999874 445444 4889999987775544333 333456778888998899988999999999988886
Q ss_pred C-CChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 180 G-ANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 180 ~-~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. .+...+++++.++|||||++++..+
T Consensus 103 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 103 RKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4 3457999999999999999999763
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.34 E-value=8.3e-12 Score=116.38 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=84.9
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCC---CCCceeEEEEcccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFST---YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~---~p~s~Dlv~~~~~~~~ 427 (506)
+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++. + .+...+.++.. .+++||+|++. +.+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 89999999999999999875 48999999999999988762 2 12222333333 23899999984 333
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------hhHHHHHHHHhcCCceEEEe
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
. +..++..+|.++.|+|||||.++|.+.. -..+++++++. +|++...
T Consensus 105 ~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 105 L-PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp C-CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 3 3346778999999999999999997521 14578888888 8987643
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=130.35 Aligned_cols=102 Identities=9% Similarity=0.001 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCChhHHH----HhhC--Cc----EEEecCccchHHHHHHHHHHcCCC-e--EEEEeccccCC------C
Q 010592 102 TVRTALDTGCGVASWGAY----LWSR--NV----IAMSFAPRDSHEAQVQFALERGVP-A--VIGVLGTIKMP------Y 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~----L~~~--~v----~~vdis~~di~~~~~~~a~~~~~~-~--~~~~~d~~~lp------~ 162 (506)
++.+|||||||+|.++.. ++.+ ++ +++|+|+.|+..+..+.+...+++ + .+...+...++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 456899999999976543 3321 33 889999888766554443322332 2 33344444433 6
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++||+|+|..+++| .+++..+|+++.|+|||||+|++..
T Consensus 132 ~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp CCCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeee-cCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7889999999999976 4678999999999999999999975
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=118.72 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-YASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp-~~~~sfDlV~~~~~l~~ 178 (506)
++.+|||+|||+|.++..|++. .|+++|+++.++..+..+........+.+...+...++ +.+++||+|+++....+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~ 101 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLP 101 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC---
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCC
Confidence 4569999999999999999986 48999999887765554443332234666665555543 45788999998743322
Q ss_pred c--------CCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 179 W--------GANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 179 ~--------~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ..+...+++++.++|||||++++...
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 102 SADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp --------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 12225788999999999999999764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=128.78 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=76.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----CccceeccccccCCCC---C------Cce
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDWCEAFSTY---P------RTY 416 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~~~~~~~~---p------~s~ 416 (506)
....+|||+|||+|.++..|++.-....+|+++|.|+.|++.|.++ +....+...+.++..+ + ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 3567899999999999999994100136899999999999999886 2222233333333332 2 699
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
|+|+|..+|++. ++..+|.++.|+|||||+|+|
T Consensus 115 D~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 115 DMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 999999998854 889999999999999999999
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-12 Score=122.56 Aligned_cols=104 Identities=26% Similarity=0.327 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC------CeEEEEeccccCCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV------PAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~------~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+. .+.+...+...+++++++||+|+++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAET-AARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 3458999999999999999987 47888887754433222 1222233 3577888888999989999999999
Q ss_pred CcccccCCChH---HHHHHHHHhcCCCeEEEEEcCCC
Q 010592 174 RCLIPWGANDG---RYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 ~~l~~~~~~~~---~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.+++|+ .++. .+++++.++|||||++++..+..
T Consensus 109 ~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 109 AFLTSV-PDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp SCGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred chhhcC-CCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 999775 4455 89999999999999999987544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=126.25 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=75.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----ccee-ccccccCCCCC-CceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIY-HDWCEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~-~~~~~~~~~~p-~s~Dlv~~~~~ 424 (506)
...+|||||||+|.++.+|++.. ..+|+++|.++.|++.|.++.- +..+ .++.+-.+.++ ++||.|+.+.+
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45789999999999999998864 3689999999999999988642 1111 12222233344 89999987665
Q ss_pred ccc--ccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 425 FSL--YKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~~--~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.. ..+..+.+.++.|+.|+|||||.|++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 543 2344467889999999999999999843
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=133.65 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=90.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc---------C-cc-ceeccccccC---------CC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---------G-LI-GIYHDWCEAF---------ST 411 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---------g-~~-~~~~~~~~~~---------~~ 411 (506)
...+|||+|||+|.++..|++......+|+++|.++.|++.|.++ | +. ..+...+.++ +.
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 346899999999999988876311125899999999999999987 4 10 1222222232 33
Q ss_pred CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------------hhHHHHHHHHh
Q 010592 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------DEIIKVKKIVG 468 (506)
Q Consensus 412 ~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------~~~~~~~~~~~ 468 (506)
.+++||+|+++.+|.+. .++..+|.|+.|+|||||+|+|.+.. -..+++.+++.
T Consensus 163 ~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 239 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVA 239 (383)
T ss_dssp CTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHH
T ss_pred CCCCEEEEEEccchhcC---CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHH
Confidence 34899999999999854 46789999999999999999997532 12378899999
Q ss_pred cCCceEE
Q 010592 469 GMRWDTK 475 (506)
Q Consensus 469 ~~~w~~~ 475 (506)
+.+|+..
T Consensus 240 ~aGF~~v 246 (383)
T 4fsd_A 240 EAGFRDV 246 (383)
T ss_dssp HTTCCCE
T ss_pred HCCCceE
Confidence 9999743
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=116.75 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=93.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eeccccccCCC-C-CCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFST-Y-PRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~~~~~-~-p~s~Dlv~ 420 (506)
+......+|||+|||+|.++..+++.+ .+|+++|.++.+++.+.++ ++.. .+...+.++.. . +++||+|+
T Consensus 48 ~~~~~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 124 (194)
T 1dus_A 48 VVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKII 124 (194)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEE
T ss_pred cccCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEE
Confidence 344456789999999999999998863 5899999999999988876 3211 02222334332 2 37999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
++..+++. ...+..+|.++.|+|||||.+++.+... ...++.+.+++.-+.+...... ....++.++|
T Consensus 125 ~~~~~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~k 193 (194)
T 1dus_A 125 TNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp ECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred ECCCcccc--hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecC----CcEEEEEEee
Confidence 98777621 2356789999999999999999987653 3344555555543343343333 2466666665
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=126.77 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=79.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc-C------------------
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER-G------------------ 147 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~-~------------------ 147 (506)
+.+.+++.....++.+|||||||+|.++..++.. .|+++|+|+.++..+......+. .
T Consensus 43 ~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~ 122 (263)
T 2a14_A 43 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 122 (263)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCc
Confidence 3444444323345568999999999887776655 38999999988765543221100 0
Q ss_pred ----------CCeE-EEEecccc-CCC---CCCCeeEEEEcCcccccCCC---hHHHHHHHHHhcCCCeEEEEEc
Q 010592 148 ----------VPAV-IGVLGTIK-MPY---ASRAFDMAHCSRCLIPWGAN---DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 ----------~~~~-~~~~d~~~-lp~---~~~sfDlV~~~~~l~~~~~~---~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+. +.+.|+.. .|+ ..++||+|+|+.+++|...+ ...+++++.|+|||||+|++++
T Consensus 123 ~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 123 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0122 66677765 344 35799999999999875433 3689999999999999999986
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-12 Score=124.88 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||+|||+|.++..|++.+ ++++|+++.++..+.. .+...+..+.+...|...+++ +++||+|+|+.+++|+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNE-TKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 34589999999999999999874 8899998876654443 334455678888899988887 7899999999999876
Q ss_pred CCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 180 GAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 180 ~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.... ..+++++.++|||||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4332 689999999999999988754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=118.47 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..++.. .++++|+++.++..+..+........+.+...|...++ +++++||+|+++..+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 4568999999999999987766 38999999877765554443332235778888876653 457899999998876
Q ss_pred cccCCChHHHHHHHHH--hcCCCeEEEEEcCC
Q 010592 177 IPWGANDGRYMIEVDR--VLRPGGYWVLSGPP 206 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~r--vLkPGG~li~~~p~ 206 (506)
++...+...++.++.+ +|+|||++++..+.
T Consensus 124 ~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 124 NVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 4432445789999999 99999999998643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=119.57 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=83.5
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
.++.+...++ +.+|||||||+|.++..++.. +++|+++.+ ++.++++ .+.+...+...+++++++|
T Consensus 38 ~~~~l~~~~~-----~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~-----~~~a~~~--~~~~~~~d~~~~~~~~~~f 103 (219)
T 1vlm_A 38 ELQAVKCLLP-----EGRGVEIGVGTGRFAVPLKIK--IGVEPSERM-----AEIARKR--GVFVLKGTAENLPLKDESF 103 (219)
T ss_dssp HHHHHHHHCC-----SSCEEEETCTTSTTHHHHTCC--EEEESCHHH-----HHHHHHT--TCEEEECBTTBCCSCTTCE
T ss_pred HHHHHHHhCC-----CCcEEEeCCCCCHHHHHHHHH--hccCCCHHH-----HHHHHhc--CCEEEEcccccCCCCCCCe
Confidence 3344555543 458999999999999999887 888887644 4455554 4667778888889888899
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+|++..+++|+ +++..+++++.++|+|||+++++.+..
T Consensus 104 D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 104 DFALMVTTICFV-DDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp EEEEEESCGGGS-SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred eEEEEcchHhhc-cCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 999999999775 678999999999999999999987543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=123.75 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=78.0
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-c-ceeccccccCCC--CCCce
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-I-GIYHDWCEAFST--YPRTY 416 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~-~~~~~~~~~~~~--~p~s~ 416 (506)
...++.........+|||+|||+|.++..|++.+ .+|+++|.|+.|++.|.++.. . ..+...+.++.. ++++|
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 106 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF 106 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCc
Confidence 3444443333445689999999999999999876 489999999999999887521 0 012222333333 34799
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|+|.|.....+..+..++..+|.++.|+|||||.+++.
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 99998643332223345678999999999999999974
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=129.12 Aligned_cols=124 Identities=15% Similarity=0.072 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
.+.+.+++.+.+.+.....++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+..+.+...|....
T Consensus 214 ~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~-n~~~~~~~v~~~~~D~~~~ 292 (381)
T 3dmg_A 214 PASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQK-GLEANALKAQALHSDVDEA 292 (381)
T ss_dssp HHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTT
T ss_pred HHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEcchhhc
Confidence 44566666666655322234569999999999999999987 48899998876654443 3444566788888898888
Q ss_pred CCCCCCeeEEEEcCccccc----CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 PYASRAFDMAHCSRCLIPW----GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~----~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.++++||+|+|+..+++. ..+...++.++.++|||||.++++.++.
T Consensus 293 ~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 293 LTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp SCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 7777899999999887541 1223689999999999999999987654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=117.54 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||+|||+|.++..+++. .++++|+++. +++.++++...+.+...| +++++++||+|+++.+++|+
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVI-----ALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDM 88 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHH-----HHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHH-----HHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcc
Confidence 3458999999999999999987 4777777654 444555545567777666 77888999999999999875
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++..+++++.++|||||++++...
T Consensus 89 -~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 89 -DDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 5789999999999999999999863
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-12 Score=124.60 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=77.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccC---CC-CCCceeEEEEcc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF---ST-YPRTYDLIHAHG 423 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~---~~-~p~s~Dlv~~~~ 423 (506)
+..+|||+|||+|.++..|++.+. .+|+++|.++.|+..|.++. +...+...+.++ +. .+++||+|++..
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 346899999999999998887642 48999999999999998862 211122223333 33 248999999998
Q ss_pred ccccc-cCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++++. .+..++..+|.++.|+|||||+++|...
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 88753 3445678899999999999999999753
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=127.94 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHH-------cCCCeEEEEeccccCC----CC--CC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE-------RGVPAVIGVLGTIKMP----YA--SR 165 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~-------~~~~~~~~~~d~~~lp----~~--~~ 165 (506)
++.+|||||||+|.++..+++. .++++|+++.++..+....... ....+.+.+.|...++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 3458999999999999999865 4899999987776555444332 1224678888887775 54 45
Q ss_pred CeeEEEEcCcccccCCC---hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGAN---DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~---~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|+.++++...+ ...++.++.++|||||+|+++++.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 99999999988553133 368999999999999999998764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-12 Score=125.03 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=80.1
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCCCC--CCceeEEEEcccc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~ 425 (506)
..+..+|||+|||+|.++..|++.-....+|+++|.++.|++.|.++- ....+...+.++..+ +++||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 344578999999999999999885211258999999999999988762 111222233444333 4899999999998
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.+. .+...+|.++.|+|||||++++.+..
T Consensus 100 ~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHM---TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcC---CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 844 47789999999999999999997754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.3e-12 Score=119.56 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=88.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
..+.+.+.+.++ ++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+..+.+...|...++++
T Consensus 21 ~~~~~~~~~~~~----~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~- 94 (243)
T 3d2l_A 21 PEWVAWVLEQVE----PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKA-METNRHVDFWVQDMRELELP- 94 (243)
T ss_dssp HHHHHHHHHHSC----TTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCGGGCCCS-
T ss_pred HHHHHHHHHHcC----CCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhh-hhcCCceEEEEcChhhcCCC-
Confidence 445566666663 2358999999999999999876 5889999887765544333 33445678888898888876
Q ss_pred CCeeEEEEcC-cccccCC--ChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 165 RAFDMAHCSR-CLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~-~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|++.. +++|+.. +...+++++.++|||||.+++..+.
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 7899999986 7777532 3368999999999999999997654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=125.82 Aligned_cols=113 Identities=13% Similarity=0.045 Sum_probs=81.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc--C
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--M 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~--l 160 (506)
..+.+.+++.+. .++.+|||||||+|..+..+++. .++++|+++.++..+. +.+...+....+...+... .
T Consensus 47 ~~~m~~~a~~~~---~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~ 122 (236)
T 3orh_A 47 TPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDVAP 122 (236)
T ss_dssp HHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHHhhc---cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEeehHHhhcc
Confidence 455566666663 24568999999999999999886 4789999886664333 3344455566676666643 3
Q ss_pred CCCCCCeeEEEEc-----CcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 161 PYASRAFDMAHCS-----RCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 161 p~~~~sfDlV~~~-----~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++++++||.|+.- ..+.| ..+...+++++.|+|||||+|++.
T Consensus 123 ~~~~~~FD~i~~D~~~~~~~~~~-~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 123 TLPDGHFDGILYDTYPLSEETWH-THQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTT-THHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccCCceEEEeeeecccchhh-hcchhhhhhhhhheeCCCCEEEEE
Confidence 5788999999852 33333 234578999999999999999885
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=116.96 Aligned_cols=138 Identities=13% Similarity=0.021 Sum_probs=97.7
Q ss_pred CCceEEeecCc-ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCC-CceeEEEEc
Q 010592 352 RYRNIMDMNAG-FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYP-RTYDLIHAH 422 (506)
Q Consensus 352 ~~r~vLD~gcG-~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p-~s~Dlv~~~ 422 (506)
...+|||+||| +|.++..|++.. ..+|+++|.++.|++.|.++ |+ .+...+.+ +..++ ++||+|.++
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEEC
Confidence 35689999999 999999998862 36899999999999988765 32 22222333 44444 899999997
Q ss_pred cccccccC----------------cCCHHHHHHHHhhhccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCC
Q 010592 423 GLFSLYKD----------------KCNIEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPL 484 (506)
Q Consensus 423 ~~~~~~~~----------------~~~~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 484 (506)
..+..... ...+..+|.++.|+|||||++++.- ......++.+.+++.+|++..+....|.
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~- 209 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT- 209 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-
Confidence 66643221 1114679999999999999999953 3356788899999999998877665544
Q ss_pred CCeEEEEEEe
Q 010592 485 VPEKILVAVK 494 (506)
Q Consensus 485 ~~~~~l~~~k 494 (506)
..-.+|..+|
T Consensus 210 ~~~~~l~f~~ 219 (230)
T 3evz_A 210 RWRHSLIFFK 219 (230)
T ss_dssp -CEEEEEEEC
T ss_pred eEEEEEEEec
Confidence 2344454444
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-12 Score=123.08 Aligned_cols=114 Identities=14% Similarity=0.061 Sum_probs=82.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC--
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-- 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l-- 160 (506)
..+++.+...+. .++.+|||||||+|.++..|++. .++++|+++.++..+.. .+...+.++.+...+...+
T Consensus 47 ~~~~~~l~~~~~---~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~ 122 (236)
T 1zx0_A 47 TPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDVAP 122 (236)
T ss_dssp HHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHhhcC---CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEecCHHHhhc
Confidence 455566665552 23458999999999999999875 47889998866644433 2223345677888888877
Q ss_pred CCCCCCeeEEEE-cCcccccCC----ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHC-SRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~-~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++++||+|++ .+.+ +... +...+++++.|+|||||+|++..
T Consensus 123 ~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 123 TLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 888999999999 5553 2111 11467999999999999999864
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=131.13 Aligned_cols=102 Identities=20% Similarity=0.131 Sum_probs=82.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc----C----CCeEEEEeccccC------CC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER----G----VPAVIGVLGTIKM------PY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~----~----~~~~~~~~d~~~l------p~ 162 (506)
++.+|||||||+|.++..|++. .++++|+++.++..+..+..... | .++.+.+.|+..+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 4569999999999999888764 48899998866654443332210 3 4688888888876 89
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++||+|+++.+++|+ +++..+|+++.|+|||||+|+++.
T Consensus 163 ~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLS-TNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEEEEccchhcC-CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999999999998764 678999999999999999999975
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=112.12 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=88.1
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCC-CceeEEEEcc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYP-RTYDLIHAHG 423 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p-~s~Dlv~~~~ 423 (506)
.....+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ |+ ..+...+.++. .++ ++||+|+++.
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~i~~~~ 108 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDKLEFNKAFIGG 108 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGGCCCSEEEECS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccCCCCcEEEECC
Confidence 3445689999999999999998843 6899999999999988876 22 11222222222 233 7999999966
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~ 477 (506)
+ .++..+|.++.|+ |||.+++.+. .....++.+.+++.+|++...
T Consensus 109 ~-------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 109 T-------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp C-------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred c-------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 5 4678899999999 9999999884 456778888999999987755
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=124.52 Aligned_cols=101 Identities=12% Similarity=-0.037 Sum_probs=78.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--------CceeEEEEcc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--------RTYDLIHAHG 423 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--------~s~Dlv~~~~ 423 (506)
...+|||+|||+|.++..|++.+. +|+++|.++.|++.|.++.....+...+.++..++ ..||+|++..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 345799999999999999998653 89999999999999988753223333345554432 2499999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++++.. ..+...+|.++.|+|||||+++|.+.
T Consensus 133 ~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 133 GFHHIP-VEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSTTSC-GGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 988654 34678999999999999999998753
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-12 Score=124.09 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=75.3
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC---CCCC-CCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM---PYAS-RAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l---p~~~-~sfDlV~~~~~l 176 (506)
+.+|||||||+|.++..+++.+ ++++|+++ .+++.++++ ....+...+...+ ++.. ++||+|+|+.++
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l 126 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGIEAVGVDGDR-----TLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFAL 126 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCC
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECchh
Confidence 3589999999999999999874 77777765 444555555 3455666666555 5544 459999999988
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ ..++..+++++.++|||||+|++.++..
T Consensus 127 ~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 127 L--HQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp C--SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred h--hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 6 5677999999999999999999987543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=119.15 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||+|||+|.++..|++.+ ++++|+++.++..+..+ +...+..+.+.+.|...++++ ++||+|+|.....++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 118 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence 34599999999999999999874 88999988777554433 334456788888898888865 689999987543333
Q ss_pred CC--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 180 GA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 180 ~~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. +...+++++.++|||||.+++..+
T Consensus 119 ~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 119 FDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 22 337899999999999999998765
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=119.54 Aligned_cols=142 Identities=12% Similarity=0.166 Sum_probs=99.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC---C-CC-CCceeEEEEc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF---S-TY-PRTYDLIHAH 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~---~-~~-p~s~Dlv~~~ 422 (506)
...+|||+|||+|.++..|++.+.. +|+++|.++.+++.|.++ ++...+...+.++ + .+ +++||+|.++
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 4568999999999999999987532 899999999999988775 3321121222222 2 23 4899999997
Q ss_pred cccccc-----------------cCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeec---CCC
Q 010592 423 GLFSLY-----------------KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDH---EDG 482 (506)
Q Consensus 423 ~~~~~~-----------------~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~---~~~ 482 (506)
.-|... ...+++..++.++.|+|||||++++.-......++...+.+.+|....... ..+
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 206 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFVHPRSD 206 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEEEEEESSTT
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEEEEeecCCC
Confidence 555322 001345679999999999999999987777788888899999998664322 223
Q ss_pred CCCCeEEEEEEec
Q 010592 483 PLVPEKILVAVKQ 495 (506)
Q Consensus 483 ~~~~~~~l~~~k~ 495 (506)
......++.++|.
T Consensus 207 ~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 207 REANTVLVEGIKD 219 (259)
T ss_dssp SCCSEEEEEEEET
T ss_pred CCcEEEEEEEEeC
Confidence 3234566666663
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=112.77 Aligned_cols=131 Identities=11% Similarity=0.102 Sum_probs=93.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-CCC-CceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-TYP-RTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-~~p-~s~Dlv~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+ +|+++|.++.|++. ...+ .. .+.++. .++ ++||+|.++..|.....
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~-~~---~~~d~~~~~~~~~fD~i~~n~~~~~~~~ 93 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGG-NL---VRADLLCSINQESVDVVVFNPPYVPDTD 93 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSS-CE---EECSTTTTBCGGGCSEEEECCCCBTTCC
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCC-eE---EECChhhhcccCCCCEEEECCCCccCCc
Confidence 3489999999999999999875 89999999999988 2222 22 223332 233 89999999887774332
Q ss_pred c------CCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 431 K------CNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 431 ~------~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
. .+...++.++.+.| |||.+++... ....+++.+++++.+|+...+.......+.-+.+-..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~~~ 163 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIKGEK 163 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEEEC
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEEec
Confidence 2 12346889999999 9999999764 35678899999999999776555433333344444433
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-12 Score=126.15 Aligned_cols=115 Identities=14% Similarity=0.065 Sum_probs=85.5
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC----CCeEEEEeccccCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG----VPAVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~----~~~~~~~~d~~~lp 161 (506)
....+.+.+... +.+|||||||+|.++..|++. .++++|+++.++..+..+. ...+ ..+.+.+.|...++
T Consensus 71 ~~~~~~~~~~~~---~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTGPV---SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRL-AEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHCCC---CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHH-HTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhCCC---CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-hhcccccccceEEEeCchhcCC
Confidence 344455555322 237999999999999999987 5899999887665444332 2223 45788999999988
Q ss_pred CCCCCeeEEEEcCcccccCCC--hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 YASRAFDMAHCSRCLIPWGAN--DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~--~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +++||+|+|+....|+.+. ...+|+++.++|||||+|++..+..
T Consensus 147 ~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 147 L-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp C-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred c-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 7 6799999987554454442 3789999999999999999987655
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-12 Score=121.64 Aligned_cols=127 Identities=15% Similarity=0.102 Sum_probs=96.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C-CCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y-PRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~-p~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..+++.+. +|+++|.++.+++.|.++ ++. ++..+.++.. + +++||+|+++..++
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCCCEEEECCcHH
Confidence 46899999999999999988763 899999999999998875 321 2222223222 3 37899999965443
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.+..++.++.|+|||||++++++.. ...+.+.+.+++.+|++...... +.+..++++|
T Consensus 196 ------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~l~~~k 254 (254)
T 2nxc_A 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred ------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc----CCeEEEEEEC
Confidence 2568999999999999999998654 36788999999999997654443 2578888876
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=115.54 Aligned_cols=132 Identities=8% Similarity=0.030 Sum_probs=92.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC--CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP--RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p--~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..|+... ...+|+++|.++.+++.+.++ ++.. +...+.++..++ ++||+|++..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~--- 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRA--- 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSC---
T ss_pred CCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCccCCcCEEEEec---
Confidence 3589999999999999988641 125899999999999988775 3321 333344544433 7999999843
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEee--cCCCCCCCeEEEEEEec
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD--HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~l~~~k~ 495 (506)
..++..++.++.++|||||++++.......++++.+++ +|+..... ..........+++++|+
T Consensus 141 ----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 141 ----FASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ----SSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ----cCCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 23578899999999999999999877666777877766 88855321 11111234566666663
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=126.43 Aligned_cols=140 Identities=10% Similarity=0.163 Sum_probs=99.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CCCceeEEEEc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YPRTYDLIHAH 422 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p~s~Dlv~~~ 422 (506)
.+.++|||||||+|.++..|++.. ....++++|. +.|++.|.++ |+...+...+.++.. +|++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 346789999999999999998732 1258999999 7999998876 332233333445443 46899999999
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------------hHHHHHHHHhcCCc
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------EIIKVKKIVGGMRW 472 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------~~~~~~~~~~~~~w 472 (506)
++++++.+ .+...+|.++.|+|||||+|+|.|..- ..+++++++++.+|
T Consensus 256 ~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf 334 (363)
T 3dp7_A 256 QFLDCFSE-EEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL 334 (363)
T ss_dssp SCSTTSCH-HHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred chhhhCCH-HHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence 98884431 134578999999999999999966310 35678889999999
Q ss_pred eEEEeecCCCCCCCeEEEEEEec
Q 010592 473 DTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+...+....|. ...++.++|.
T Consensus 335 ~~v~~~~~~g~--~~svi~~~~~ 355 (363)
T 3dp7_A 335 EVEEIQDNIGL--GHSILQCRLK 355 (363)
T ss_dssp EESCCCCCBTT--TBEEEEEEEC
T ss_pred eEEEEEeCCCC--CceEEEEeec
Confidence 95543322222 4566666664
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=115.69 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=94.8
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCC---CCCceeEEEEcc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFST---YPRTYDLIHAHG 423 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~---~p~s~Dlv~~~~ 423 (506)
.-+...+|||+|||. +.+|.|+.|++.|.++.. +.....-.+.++. .+++||+|+|..
T Consensus 9 g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL 71 (176)
T ss_dssp TCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred CCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC
Confidence 344567899999996 238999999999998841 2222222234544 348999999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------hHHHHHHHHhcCCceEEEeecCC------------
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------EIIKVKKIVGGMRWDTKMVDHED------------ 481 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------~~~~~~~~~~~~~w~~~~~~~~~------------ 481 (506)
++++.. .++..+|.|+.|+|||||+|++.+... ..+++.+.+++.++ +.+.+...
T Consensus 72 ~l~~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~~ 148 (176)
T 2ld4_A 72 VPGSTT--LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSVR 148 (176)
T ss_dssp STTCCC--CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHHH
T ss_pred hhhhcc--cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHHH
Confidence 988551 456899999999999999999975432 26788899999999 55433211
Q ss_pred ---CCC---CCeEEEEEEecccccCCC
Q 010592 482 ---GPL---VPEKILVAVKQYWVASGN 502 (506)
Q Consensus 482 ---~~~---~~~~~l~~~k~~w~~~~~ 502 (506)
|.. ....+++|+|+-|..+++
T Consensus 149 ~~~g~~~~~~~~~~~~a~Kp~~~~gs~ 175 (176)
T 2ld4_A 149 EHLGHESDNLLFVQITGKKPNFEVGSS 175 (176)
T ss_dssp HHTCCCCSSEEEEEEEEECCCSSCCSC
T ss_pred HHhcccCCceEEEEEeccCCcccccCC
Confidence 111 126789999998877653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-12 Score=119.38 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=73.6
Q ss_pred CceEEeecCcccHH-HHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-cceeccccccCCCCCCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGF-AAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~-~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-~~~~~~~~~~~~~~p~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.+ ...++..+ .+|+++|.++.|++.|.++ +. +.....-.+.++..+++||+|++..++.
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 46899999999998 45555555 4899999999999998876 21 1222111123332348999999998888
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.. ..++..+|.++.|+|||||.++|.+
T Consensus 101 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 101 HMR-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 653 3467889999999999999999965
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=129.48 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC------------------------------
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG------------------------------ 147 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~------------------------------ 147 (506)
.+.+|||||||+|.++..|+.+ .++++|+++.++..+.........
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4569999999999999999876 488999988766544433211100
Q ss_pred ----------------------------CCeEEEEeccccCC-----CCCCCeeEEEEcCcccccC---C--ChHHHHHH
Q 010592 148 ----------------------------VPAVIGVLGTIKMP-----YASRAFDMAHCSRCLIPWG---A--NDGRYMIE 189 (506)
Q Consensus 148 ----------------------------~~~~~~~~d~~~lp-----~~~~sfDlV~~~~~l~~~~---~--~~~~~l~e 189 (506)
..+.+...|....+ +.+++||+|+|..+++++. . +...++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 24667777765433 5678999999999885542 1 34789999
Q ss_pred HHHhcCCCeEEEEEcC
Q 010592 190 VDRVLRPGGYWVLSGP 205 (506)
Q Consensus 190 ~~rvLkPGG~li~~~p 205 (506)
+.++|||||+|++...
T Consensus 206 ~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHEEEEEEEEEECC
T ss_pred HHHHhCCCcEEEEecC
Confidence 9999999999999754
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=119.02 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=108.8
Q ss_pred hhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cce
Q 010592 328 QEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGI 401 (506)
Q Consensus 328 ~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~ 401 (506)
....+.|.+++..-..++..+......+|||||||+|..+..|+... ....|+++|.++.|+.+|.+. |+ +..
T Consensus 56 ~~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~ 134 (249)
T 3g89_A 56 RGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARA 134 (249)
T ss_dssp -CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred CCHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEE
Confidence 34456676666544444443333456789999999999988887531 125899999999999988775 43 223
Q ss_pred eccccccCCC---CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC---hhhHHHHHHHHhcCCceEE
Q 010592 402 YHDWCEAFST---YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE---VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 402 ~~~~~~~~~~---~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~---~~~~~~~~~~~~~~~w~~~ 475 (506)
++.-.++++. ++++||+|.|.. ..++..++.++.|+|||||++++-.. .+.+..++..++.++|.+.
T Consensus 135 ~~~d~~~~~~~~~~~~~fD~I~s~a-------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~ 207 (249)
T 3g89_A 135 LWGRAEVLAREAGHREAYARAVARA-------VAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLG 207 (249)
T ss_dssp EECCHHHHTTSTTTTTCEEEEEEES-------SCCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEE
T ss_pred EECcHHHhhcccccCCCceEEEECC-------cCCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEE
Confidence 3322334432 248999999832 24678899999999999999998654 3455666777888899865
Q ss_pred Eeec--CCCCCCCeEEEEEEeccccc
Q 010592 476 MVDH--EDGPLVPEKILVAVKQYWVA 499 (506)
Q Consensus 476 ~~~~--~~~~~~~~~~l~~~k~~w~~ 499 (506)
.... ..+......+++.+|.-.++
T Consensus 208 ~~~~~~~p~~~~~R~l~~~~k~~~t~ 233 (249)
T 3g89_A 208 EVLALQLPLSGEARHLVVLEKTAPTP 233 (249)
T ss_dssp EEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred EEEEeeCCCCCCcEEEEEEEeCCCCC
Confidence 3322 12222345677777765555
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=116.26 Aligned_cols=87 Identities=22% Similarity=0.330 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 102 TVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
++.+|||||||+|.++..++ ..++++|+++. .+.+...+...+|+++++||+|++..++ |+ .
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-T 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-S
T ss_pred CCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc-cc-c
Confidence 34589999999999999885 57999999885 2345677888889989999999999988 43 6
Q ss_pred ChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 182 NDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 182 ~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+...+++++.++|+|||++++..+.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 7799999999999999999998643
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=117.64 Aligned_cols=141 Identities=10% Similarity=-0.029 Sum_probs=91.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCC----C--CCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST----Y--PRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~----~--p~s~Dlv~ 420 (506)
+......+|||+|||+|.++..|++... ...|+++|.++.|++.+.++.- ...+...+.++.. . +.+||+|+
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence 3334456899999999999999987521 2489999999999998877531 1222222333332 2 27899998
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEE----eC-hh------hHHHHHHHHhcCCceEEEeecCCCCCCCeEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR----DE-VD------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKI 489 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~----d~-~~------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 489 (506)
+. ..+......+|.++.|+|||||.++|. .. .. ..++++ ++.+.++++......+.-..+..+
T Consensus 149 ~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~ 222 (230)
T 1fbn_A 149 ED-----VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVM 222 (230)
T ss_dssp EC-----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEE
T ss_pred Ee-----cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEE
Confidence 41 111212367899999999999999994 11 00 225677 778888886543322222234678
Q ss_pred EEEEec
Q 010592 490 LVAVKQ 495 (506)
Q Consensus 490 l~~~k~ 495 (506)
++++|+
T Consensus 223 v~~~k~ 228 (230)
T 1fbn_A 223 FVGIWE 228 (230)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 888874
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-11 Score=110.51 Aligned_cols=110 Identities=15% Similarity=-0.037 Sum_probs=81.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+..+........+.+...|........+
T Consensus 30 ~~~l~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 30 AVTLSKLRLQ--DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHTTCC--TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHcCCC--CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 4455556443 3459999999999999999876 389999998777555544433322346777777755443446
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||+|++..++. +...+++++.++|||||.+++..+
T Consensus 108 ~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 108 DPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999987653 568999999999999999999864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-12 Score=122.76 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=73.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceecccc---ccC--CCCCCceeEEEE-cc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWC---EAF--STYPRTYDLIHA-HG 423 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~---~~~--~~~p~s~Dlv~~-~~ 423 (506)
...+|||+|||+|.++..|++.+ ..+|+++|.|+.|++.|.++.- ...+...+ +++ +..+++||+|++ ..
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 35689999999999999998754 2489999999999999988641 01121112 223 333489999999 44
Q ss_pred ccc-cccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFS-LYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~-~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+. +..+....+.+|.|+.|+|||||+|++.+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 432 112223445789999999999999998653
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=5.7e-12 Score=124.69 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=77.5
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHH----------------HcCC-
Q 010592 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFAL----------------ERGV- 148 (506)
Q Consensus 89 ~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~----------------~~~~- 148 (506)
++.+.+.+.....++.+|||||||+|.+...++.. .|+++|+|+.++..+...... ..+.
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence 34455554222224569999999999955444432 589999988777544432110 0110
Q ss_pred -------------CeEEEEecccc-CCC-----CCCCeeEEEEcCcccccCCC---hHHHHHHHHHhcCCCeEEEEEc
Q 010592 149 -------------PAVIGVLGTIK-MPY-----ASRAFDMAHCSRCLIPWGAN---DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 149 -------------~~~~~~~d~~~-lp~-----~~~sfDlV~~~~~l~~~~~~---~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...+...|+.. +|+ ++++||+|+|+.+++++..+ ...+|+++.|+|||||+|++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 13455567766 664 35679999999999775443 5899999999999999999974
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.8e-12 Score=114.72 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=103.0
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCCCc
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYPRT 415 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p~s 415 (506)
|...+..+. ...+|||+|||+|.+|..++...--+ .|+++|.++.|++++.++ |+...+.. ++... ..+.+
T Consensus 40 Y~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~-~d~~~~~~~~~ 115 (200)
T 3fzg_A 40 YTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF-LNKESDVYKGT 115 (200)
T ss_dssp HHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE-ECCHHHHTTSE
T ss_pred HHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE-ecccccCCCCC
Confidence 444444453 35689999999999999997653233 999999999999999886 22212221 12111 24589
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe--Ch---------hhHHHHHHHHhcCCceEEEeecCCCCC
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD--EV---------DEIIKVKKIVGGMRWDTKMVDHEDGPL 484 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--~~---------~~~~~~~~~~~~~~w~~~~~~~~~~~~ 484 (506)
||+|.+..+++++.++. .++.++.+.|||||.+|--+ .+ .+...+++.+..=.|.+...+..
T Consensus 116 ~DvVLa~k~LHlL~~~~---~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~---- 188 (200)
T 3fzg_A 116 YDVVFLLKMLPVLKQQD---VNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG---- 188 (200)
T ss_dssp EEEEEEETCHHHHHHTT---CCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET----
T ss_pred cChhhHhhHHHhhhhhH---HHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC----
Confidence 99999999999775443 37779999999999999977 22 17788888889999998877666
Q ss_pred CCeEEEEEEe
Q 010592 485 VPEKILVAVK 494 (506)
Q Consensus 485 ~~~~~l~~~k 494 (506)
.|.+-+.+|
T Consensus 189 -nEl~y~~~~ 197 (200)
T 3fzg_A 189 -NELVYITSG 197 (200)
T ss_dssp -TEEEEEECC
T ss_pred -ceEEEEEec
Confidence 455555554
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=122.11 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=78.2
Q ss_pred CCCEEEEECCCCChhHHHHh--hC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLW--SR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~--~~---~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..++ .. .++++|+++.++..+... ....+.. +.+.+.|...++++ ++||+|+++.
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRL-AAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHH-HTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHH-HHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 45689999999999999985 22 488999988666444332 2233333 78888999999987 8999999999
Q ss_pred cccccCCChH---HHHHHHHHhcCCCeEEEEEc
Q 010592 175 CLIPWGANDG---RYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~~---~~l~e~~rvLkPGG~li~~~ 204 (506)
+++|+. ++. .+++++.++|||||+|+++.
T Consensus 196 ~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 196 LNIYEP-DDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp SGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhhhcC-CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 987764 343 48999999999999999976
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=113.70 Aligned_cols=119 Identities=15% Similarity=0.221 Sum_probs=88.7
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--CceeEEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTYDLIHA 421 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~Dlv~~ 421 (506)
......+|||+|||+|.++..+++.. .+|+++|.++.+++.+.++ ++...+...+.++.. ++ .+||+|.+
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 106 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVV 106 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEE
Confidence 33445689999999999999999875 5899999999999988874 221112212222221 22 58999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEE
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~ 476 (506)
..++. .+..+|.++.|+|||||.+++.+.. ....++.+++++.+|++..
T Consensus 107 ~~~~~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 107 GGSGG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp SCCTT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred CCchH------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEE
Confidence 76654 4688999999999999999998754 4667888888888886543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=117.16 Aligned_cols=101 Identities=16% Similarity=0.264 Sum_probs=76.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCC---CCceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTY---PRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~---p~s~Dlv~~~~~~~~ 427 (506)
..+|||+|||+|.++..|++.+. +|+++|.++.|++.|.++.. ...+...+.++..+ +++||+|+++.++.+
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 56899999999999999998763 89999999999999887621 01122223444332 379999999888442
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
. +..++..+|.++.|+|||||.+++.+..
T Consensus 116 ~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 116 F-EPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp C-CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred C-CHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 2 2345678999999999999999997654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=118.11 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=82.3
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
..+.+.+.+.+ .++.+|||||||+|.++..|++. .++++|+++.++ +.++++...+.+...|...+++
T Consensus 28 ~~~~~~l~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~- 97 (239)
T 3bxo_A 28 SDIADLVRSRT----PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDML-----THARKRLPDATLHQGDMRDFRL- 97 (239)
T ss_dssp HHHHHHHHHHC----TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHH-----HHHHHHCTTCEEEECCTTTCCC-
T ss_pred HHHHHHHHHhc----CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHH-----HHHHHhCCCCEEEECCHHHccc-
Confidence 44444455444 23458999999999999999876 488888876544 4455554557788888888887
Q ss_pred CCCeeEEEEcC-cccccCC--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 164 SRAFDMAHCSR-CLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 164 ~~sfDlV~~~~-~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++||+|+|.. +++|+.. +...+++++.++|||||.+++..+
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 67999999755 7766532 337899999999999999999753
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=135.50 Aligned_cols=121 Identities=15% Similarity=0.234 Sum_probs=91.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC-----cEEEecCccchHHHHHHHHHH-----cC-CCeEEEE
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALE-----RG-VPAVIGV 154 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~-----v~~vdis~~di~~~~~~~a~~-----~~-~~~~~~~ 154 (506)
...++.+.+.+... .+.+|||||||+|.++..|++.+ |+++|+++.++..+..+.... .+ ..+.+.+
T Consensus 707 eqRle~LLelL~~~--~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiq 784 (950)
T 3htx_A 707 KQRVEYALKHIRES--SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784 (950)
T ss_dssp HHHHHHHHHHHHHS--CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEE
T ss_pred HHHHHHHHHHhccc--CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEE
Confidence 44455566665322 44599999999999999998863 789999887776555433322 12 3478889
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
+|+..+++++++||+|+|..+++|+.+.. ..+++++.++|||| .+++++|...+
T Consensus 785 GDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey 839 (950)
T 3htx_A 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF 839 (950)
T ss_dssp SCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred CchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence 99999999999999999999998875422 36899999999999 88888776544
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=116.24 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=82.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc--CCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--MPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~--lp~~~~ 165 (506)
+.+.+.++ .++.+|||+|||+|.++..+++.+ ++++|+++ .+++.+.++.. .+...|... ++++++
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~-----~~~~~~~~~~~--~~~~~d~~~~~~~~~~~ 92 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFP-----EAAEQAKEKLD--HVVLGDIETMDMPYEEE 92 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSH-----HHHHHHHTTSS--EEEESCTTTCCCCSCTT
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHhCC--cEEEcchhhcCCCCCCC
Confidence 34555554 345699999999999999998874 67777765 44455555432 566677765 677888
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+||+|++..+++|+ .++..+++++.++|+|||+++++.|..
T Consensus 93 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 93 QFDCVIFGDVLEHL-FDPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp CEEEEEEESCGGGS-SCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred ccCEEEECChhhhc-CCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 99999999999875 567899999999999999999987654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-11 Score=114.10 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=77.9
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+..+.......++.+...|...++ +++++||+|++++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 121 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence 458999999999999999875 48999999877755554433332235778888887776 778899999998653
Q ss_pred cccCC--------ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 177 IPWGA--------NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~--------~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|.. ....++.++.++|||||.|++.+.
T Consensus 122 -~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 122 -PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred -CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 3322 125799999999999999999864
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-12 Score=120.94 Aligned_cols=113 Identities=11% Similarity=0.130 Sum_probs=86.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCCC-CCceeEEEEcccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFSTY-PRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~~-p~s~Dlv~~~~~~~~~~ 429 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.. +. ...++.+.++.- +++||+|+++
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------- 118 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------- 118 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------
T ss_pred CCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------
Confidence 4689999999999999999875 489999999999999998832 11 222222344444 5899999984
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEe
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
.++..+|.++.|+|||||.++..........+.+.+.+.++.....
T Consensus 119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEEEE
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 3456799999999999999995444445667888888888886543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-12 Score=117.03 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=85.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cc-eeccccccCCC---CCCceeEEEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IG-IYHDWCEAFST---YPRTYDLIHA 421 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~-~~~~~~~~~~~---~p~s~Dlv~~ 421 (506)
.+..+|||+|||+|.++..+++.. ...+|+++|.++.|++.|.++-. +. ...+..+.++. ..++||+|.+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 446789999999999999998862 13689999999999998887621 11 11111221211 1289999999
Q ss_pred ccccccccCc-------------CC----------HHHHHHHHhhhccCCcE-EEEEeChhhHHHHHHHHh--cCCceEE
Q 010592 422 HGLFSLYKDK-------------CN----------IEDILLEMDRILRPEGA-IIIRDEVDEIIKVKKIVG--GMRWDTK 475 (506)
Q Consensus 422 ~~~~~~~~~~-------------~~----------~~~~l~e~~RvLrPgG~-~ii~d~~~~~~~~~~~~~--~~~w~~~ 475 (506)
+.-|...... .. ...++.++.|+|||||+ +++.-.....+.+.+++. +.+|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 7555321100 00 16789999999999999 666666666788888888 8888644
Q ss_pred EeecCCCCCCCeEEEEEEec
Q 010592 476 MVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~k~ 495 (506)
...... .....+++++|.
T Consensus 188 ~~~~~~--~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVKDL--RGIDRVIAVTRE 205 (215)
T ss_dssp CEEECT--TSCEEEEEEEEC
T ss_pred EEEEec--CCCEEEEEEEEc
Confidence 222221 134778888764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.6e-12 Score=119.45 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC-C--CCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM-P--YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l-p--~~~~sfDlV~~~ 173 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+..+ +.+.++ ++.+...|+..+ + +++++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~-~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLAS-AHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHH-HHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 3458999999999999999865 389999998877655543 344444 477777887663 3 778999999997
Q ss_pred CcccccCCCh--------HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 174 RCLIPWGAND--------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 174 ~~l~~~~~~~--------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+.. +|.... ..+++++.++|||||+|++++..
T Consensus 113 ~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 113 FPD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp SCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 543 443322 25999999999999999998753
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=114.54 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=71.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlV~~ 172 (506)
.++.+|||+|||+|.++..|++. .|+++|+++.++. .+.+.++.+ .++.+.+.|... .++. ++||+|+|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE-KLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHH-HHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 34569999999999999988764 4899999987653 344555544 346666667654 3454 79999999
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+. ..+ .+...+++++.|+|||||+|+++.
T Consensus 133 ~~-~~~--~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DI-AQK--NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CC-CST--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec-cCh--hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 73 212 222456999999999999999985
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=112.21 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEc-Ccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCS-RCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~-~~l~~ 178 (506)
++.+|||+|||+|.++..+++.+ ++++|+++. +++.++++...+.+...|...+++++++||+|+++ .++++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~-----~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPI-----LIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHH-----HHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 34589999999999999998874 777777654 44555555455778888888888888899999998 56655
Q ss_pred cCC-ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 179 WGA-NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 179 ~~~-~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.. +...++.++.++|+|||++++..+..
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 432 23789999999999999999986543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.5e-12 Score=124.64 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC-CCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY-ASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~-~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+. .+.+.+.|...+++ ++++||+|+|..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA-RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 3459999999999999888765 4889999887665444332 22232 36778888888888 6889999999998
Q ss_pred cccc---CCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 176 LIPW---GANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~---~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++|. ..+...+++++.++|||||+|++.++.
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 8652 233478999999999999999998754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=120.44 Aligned_cols=111 Identities=13% Similarity=0.001 Sum_probs=77.1
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC---
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY--- 162 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~--- 162 (506)
.++.+.+.+... ++.+|||||||+|.++..|++++ |+++|+|+.|+. .++++.... ....+...++.
T Consensus 33 ~~~~il~~l~l~--~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~-----~Ar~~~~~~-~v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 33 DRENDIFLENIV--PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCD-----DLAEALADR-CVTIDLLDITAEIP 104 (261)
T ss_dssp HHHHHHHTTTCC--TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHH-----HHHHHTSSS-CCEEEECCTTSCCC
T ss_pred HHHHHHHhcCCC--CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHH-----HHHHHHHhc-cceeeeeecccccc
Confidence 334556666443 34599999999999999999874 888888776554 333332111 12223333322
Q ss_pred --CCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 --ASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 --~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.+++||+|+|+.+++|+..+ ...++.++.++| |||.++++.+..
T Consensus 105 ~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 105 KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 25789999999999887543 367999999999 999999987543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=123.00 Aligned_cols=141 Identities=13% Similarity=0.151 Sum_probs=100.8
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCCCceeEEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHA 421 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p~s~Dlv~~ 421 (506)
.+...+..+|||+|||+|.++..|++.. ....++.+|. +.|++.|.++ ++...+.....++ ..+|.+||+|++
T Consensus 164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~ 241 (332)
T 3i53_A 164 KYDWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVL 241 (332)
T ss_dssp SSCCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEE
T ss_pred hCCCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEE
Confidence 3444556799999999999999998732 1257889999 8999988865 3322233333444 334568999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEEEeec
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.++++++.+ .+...+|.++.|+|||||+|+|.|.. ...+++++++++.+|+...+..
T Consensus 242 ~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 242 SAVLHDWDD-LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ehhhccCCH-HHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 999985441 12478999999999999999997642 1356788999999999765443
Q ss_pred CCCCCCCeEEEEEEe
Q 010592 480 EDGPLVPEKILVAVK 494 (506)
Q Consensus 480 ~~~~~~~~~~l~~~k 494 (506)
..+ .-++.++|
T Consensus 321 ~~~----~~vie~r~ 331 (332)
T 3i53_A 321 ISY----VSIVEMTA 331 (332)
T ss_dssp CSS----SEEEEEEE
T ss_pred CCC----cEEEEEee
Confidence 321 55666665
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-11 Score=118.23 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=77.6
Q ss_pred HHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcc------cHHHHHhc----Cccceecccccc
Q 010592 339 NAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN------TLGVIYER----GLIGIYHDWCEA 408 (506)
Q Consensus 339 ~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~------~l~~~~~r----g~~~~~~~~~~~ 408 (506)
..+..++..+...+..+|||+|||+|.++..|++......+|+++|.++. |++.|.++ ++...++..+.+
T Consensus 30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 33445555455555678999999999999999875211148999999986 99988776 221222222222
Q ss_pred ------CCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 409 ------FSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 409 ------~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++..+++||+|++..++.+.. +...++..+.++++|||+++|.+
T Consensus 110 ~~~~~~~~~~~~~fD~v~~~~~l~~~~---~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 110 NLSDDLGPIADQHFDRVVLAHSLWYFA---SANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CTTTCCGGGTTCCCSEEEEESCGGGSS---CHHHHHHHHHHHTTTCSEEEEEE
T ss_pred hhhhccCCCCCCCEEEEEEccchhhCC---CHHHHHHHHHHHhCCCCEEEEEE
Confidence 222348999999999998544 55666666666666799999964
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.9e-12 Score=116.65 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+.. +.+...|.... .+++||+|+++..++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENA-ALNGIYDIALQKTSLLAD--VDGKFDLIVANILAE 136 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHTTCCCCEEEESSTTTT--CCSCEEEEEEESCHH
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEecccccc--CCCCceEEEECCcHH
Confidence 3459999999999999999876 4789999887665444333 334444 67777776543 468999999987764
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+ ...+++++.++|||||+++++..
T Consensus 137 ~----~~~~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 137 I----LLDLIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp H----HHHHGGGSGGGEEEEEEEEEEEE
T ss_pred H----HHHHHHHHHHhcCCCCEEEEEec
Confidence 4 36889999999999999999753
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=119.23 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=79.5
Q ss_pred CCCceEEeecCcc---cHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCC-------------CCC
Q 010592 351 GRYRNIMDMNAGF---GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFS-------------TYP 413 (506)
Q Consensus 351 ~~~r~vLD~gcG~---G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~-------------~~p 413 (506)
...++|||||||+ |.++..+.... ....|+++|.|+.||+.|+++- ....+...+.++. .+|
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 3568999999999 98877665421 1258999999999999998862 1122333334442 245
Q ss_pred -CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 414 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 414 -~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.+||+|.+..+|+++.+. ++..+|.|+.|+|||||+|+|.+..
T Consensus 155 ~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence 689999999999977644 6889999999999999999998644
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-10 Score=114.41 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEE-Eeccc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~-~~d~~ 158 (506)
++...+.. +.+.+.. ...+.+|||||||+|.++..|++. .|+++|+++.|+..+. +....+... ..++.
T Consensus 68 rg~~Kl~~-~l~~~~~-~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~-----r~~~rv~~~~~~ni~ 140 (291)
T 3hp7_A 68 RGGLKLEK-ALAVFNL-SVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL-----RQDDRVRSMEQYNFR 140 (291)
T ss_dssp TTHHHHHH-HHHHTTC-CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH-----HTCTTEEEECSCCGG
T ss_pred chHHHHHH-HHHhcCC-CccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcccceecccCce
Confidence 44455544 4444432 234569999999999999999887 3899999998885432 222233222 22333
Q ss_pred cCC---CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccch----hcccCChHHhHHHHHHHH
Q 010592 159 KMP---YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNY----KAWQRPKEELQEEQRKIE 231 (506)
Q Consensus 159 ~lp---~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~----~~~~~~~~~~~~~~~~l~ 231 (506)
.++ ++..+||+|+|..++++ ...+|.++.|+|||||.|++...|..-.... ....+.....+...+.+.
T Consensus 141 ~l~~~~l~~~~fD~v~~d~sf~s----l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~ 216 (291)
T 3hp7_A 141 YAEPVDFTEGLPSFASIDVSFIS----LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVT 216 (291)
T ss_dssp GCCGGGCTTCCCSEEEECCSSSC----GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHH
T ss_pred ecchhhCCCCCCCEEEEEeeHhh----HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHH
Confidence 333 34456999999887754 3679999999999999999975332111111 123334444455566677
Q ss_pred HHHHhcceeec
Q 010592 232 EIANLLCWEKK 242 (506)
Q Consensus 232 ~l~~~~~w~~~ 242 (506)
+++...+|...
T Consensus 217 ~~~~~~Gf~v~ 227 (291)
T 3hp7_A 217 AFAVDYGFSVK 227 (291)
T ss_dssp HHHHHTTEEEE
T ss_pred HHHHHCCCEEE
Confidence 77677677543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=113.94 Aligned_cols=111 Identities=14% Similarity=0.029 Sum_probs=82.7
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.....+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+..........++.+...|....+.+.
T Consensus 64 ~~~~~~~~~l~~~--~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 64 YMVARMTELLELT--PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCC--CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 3445566666443 4559999999999999999876 48899998876655444333322234778888887766667
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|++..+++++. .++.++|||||+++++.+.
T Consensus 142 ~~~D~i~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIP-------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCC-------THHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhh-------HHHHHhcccCcEEEEEEcC
Confidence 8999999998886653 2689999999999998765
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=114.82 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=87.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C-CCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y-PRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~-p~s~Dlv~~~~ 423 (506)
..+|||+|||+|.++..|++.. ...+|+++|.++.|+..|.++ |+ ..+...+.++.. + +++||+|+++.
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 4579999999999999998752 125899999999999988775 33 222222333322 3 38999999964
Q ss_pred cccccc-----CcCCHHHHHHHHhhhccCCcEEEEEe-ChhhHHHHHHHHhcCCceEEEee
Q 010592 424 LFSLYK-----DKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 424 ~~~~~~-----~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w~~~~~~ 478 (506)
...+.. .+.....+|.++.|+|||||.+++.. .....+.+.+++...+|......
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence 332111 11134679999999999999999965 44567788888888889865443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=114.90 Aligned_cols=101 Identities=10% Similarity=0.143 Sum_probs=76.9
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEEcCc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlV~~~~~ 175 (506)
+.+|||||||+|.++..|++. .++++|+++.++..+..+ +.+.+. ++.+...|+..++ +++++||.|++.+.
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~-~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQK-VKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHH-HHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 458999999999999999875 489999988777555433 333444 4778888887766 77889999998654
Q ss_pred ccccCCC--------hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 176 LIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. +|... ...+++++.++|||||.|++.+.
T Consensus 118 ~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred C-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 33221 25789999999999999999864
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-11 Score=118.39 Aligned_cols=104 Identities=10% Similarity=-0.020 Sum_probs=77.9
Q ss_pred hhCCCCCCCCCEEEEECCCCChhHHHH-hhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 010592 94 SVIPIKNGTVRTALDTGCGVASWGAYL-WSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDM 169 (506)
Q Consensus 94 ~~l~~~~~~~~~VLDiGCG~G~~~~~L-~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDl 169 (506)
.++.+ .++.+|||||||+|.++..+ ++. .|+++|+++.++..+....+.....++.+.++|+..+| +++||+
T Consensus 116 ~la~l--~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDv 191 (298)
T 3fpf_A 116 ALGRF--RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDV 191 (298)
T ss_dssp HHTTC--CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSE
T ss_pred HHcCC--CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCE
Confidence 44544 34569999999999776544 432 58999999987766655444333235788888887775 689999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|++... .++...+++++.|+|||||+|++...
T Consensus 192 V~~~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 192 LMVAAL----AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEECTT----CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCC----ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 998643 35678999999999999999999763
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=123.73 Aligned_cols=145 Identities=11% Similarity=0.102 Sum_probs=103.5
Q ss_pred HHhhhcCCCC-CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CC
Q 010592 343 KINRLLDSGR-YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YP 413 (506)
Q Consensus 343 ~~~~~~~~~~-~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p 413 (506)
.++..+...+ ..+|||+|||+|.++..|++.. ....++.+|. +.|++.|.++ ++...+.....++.. .+
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 246 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG 246 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC
Confidence 3444444444 7799999999999999998742 1257899999 6899988765 332223333344332 45
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh---------------------------hhHHHHHHH
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------------DEIIKVKKI 466 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---------------------------~~~~~~~~~ 466 (506)
..||+|++.++|+++. ..+...+|.++.|+|||||+|+|.|.. ...++++++
T Consensus 247 ~~~D~v~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (352)
T 3mcz_A 247 GAADVVMLNDCLHYFD-AREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV 325 (352)
T ss_dssp CCEEEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred CCccEEEEecccccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence 7899999999998543 123478999999999999999997521 024678899
Q ss_pred HhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 467 VGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 467 ~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+++.+|++..... ....+++++|+
T Consensus 326 l~~aGf~~~~~~~-----g~~~l~~a~kp 349 (352)
T 3mcz_A 326 VRDAGLAVGERSI-----GRYTLLIGQRS 349 (352)
T ss_dssp HHHTTCEEEEEEE-----TTEEEEEEECC
T ss_pred HHHCCCceeeecc-----CceEEEEEecC
Confidence 9999999765322 25789999986
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=115.45 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHH---HHcCC-CeEEEEeccccCCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA---LERGV-PAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a---~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
++.+|||||||+|.++..|++. .++++|+++.++........ ...+. ++.+.+.|+..+|+++++ |.|+..
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 3458999999999999999876 48999999988864332211 12333 578888999999998777 887754
Q ss_pred Cccc----ccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010592 174 RCLI----PWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 174 ~~l~----~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
.... |+..++..+++++.++|||||.|+++.....|
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAW 145 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGB
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccc
Confidence 3221 13455689999999999999999997644433
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-11 Score=122.64 Aligned_cols=145 Identities=13% Similarity=0.136 Sum_probs=102.6
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDL 418 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dl 418 (506)
++..+...+..+|||+|||+|.++..|++.. ...+++++|. +.|++.|.++ |+...+...+.++...| ..+|+
T Consensus 182 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~ 259 (359)
T 1x19_A 182 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADA 259 (359)
T ss_dssp HHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSE
T ss_pred HHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCE
Confidence 3344445567799999999999999998752 1258999999 8999998875 44222333345554433 34499
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------------hhHHHHHHHHhcC
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------------DEIIKVKKIVGGM 470 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------------~~~~~~~~~~~~~ 470 (506)
|++..+|+++.+ .....+|.++.|+|||||+++|.|.. ...+++++++++.
T Consensus 260 v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 260 VLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred EEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence 999999985431 12678999999999999999997611 2446788889999
Q ss_pred CceEEEeecCCCCCCCeEEEEEEec
Q 010592 471 RWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 471 ~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+|+...+.... ...++.++|+
T Consensus 339 Gf~~v~~~~~~----~~~vi~a~kp 359 (359)
T 1x19_A 339 GYKDVTMVRKY----DHLLVQAVKP 359 (359)
T ss_dssp TCEEEEEEEET----TEEEEEEECC
T ss_pred CCceEEEEecC----CceEEEEeCC
Confidence 99865443322 4567888874
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=115.35 Aligned_cols=122 Identities=9% Similarity=0.029 Sum_probs=84.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCC-C-CCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FST-Y-PRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~-~-p~s~Dlv~~~~ 423 (506)
...|||+|||+|.++..|++.. ...+|+++|.++.|+..|.++ |+ ..+...+.+ ++. + +++||.|++..
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 4579999999999999998742 125899999999999988775 33 222222233 221 3 38999998743
Q ss_pred ccccc-----cCcCCHHHHHHHHhhhccCCcEEEEEe-ChhhHHHHHHHHhcCCceEEE
Q 010592 424 LFSLY-----KDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 424 ~~~~~-----~~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w~~~~ 476 (506)
...+. ..+.....+|.++.|+|||||.|+|.. .....+.+...+...+|....
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~ 175 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTY 175 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 22211 112224689999999999999999964 555667777777777887543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-11 Score=108.56 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=76.5
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecc-ccCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGT-IKMP 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~-~~lp 161 (506)
....+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+.+ ..+...+. ..++
T Consensus 13 ~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~ 89 (178)
T 3hm2_A 13 VRALAISALAPK--PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS-NAINLGVSDRIAVQQGAPRAFD 89 (178)
T ss_dssp HHHHHHHHHCCC--TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHH-HHHTTTCTTSEEEECCTTGGGG
T ss_pred HHHHHHHHhccc--CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-HHHHhCCCCCEEEecchHhhhh
Confidence 334455555433 3458999999999999999876 37889998866644433 23333443 22555555 3344
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...++||+|++..++++ ..+++++.++|||||++++...
T Consensus 90 ~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 90 DVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred ccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 33379999999988754 5689999999999999999864
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=115.27 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=82.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH----h----cCccceecccccc---CCCCCCceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----E----RGLIGIYHDWCEA---FSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~----~----rg~~~~~~~~~~~---~~~~p~s~Dlv 419 (506)
....+|||+|||+|.++..|++.. ...+|+++|.++.|+..+. + +++ ..+...+.+ ++..+++ |.|
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEE
Confidence 345689999999999999998852 1378999999999999632 1 232 122233333 4433355 777
Q ss_pred EEcccccccc--CcCCHHHHHHHHhhhccCCcEEEEEeCh------------------h-hHHHHHHHHhcCCceEEEe
Q 010592 420 HAHGLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDEV------------------D-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 420 ~~~~~~~~~~--~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------~-~~~~~~~~~~~~~w~~~~~ 477 (506)
+....+.... +..+...+|.|+.|+|||||.++|.... . ..+.+.+++...+|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence 7422221111 2234478999999999999999995311 1 2345888999999997644
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-11 Score=121.45 Aligned_cols=146 Identities=20% Similarity=0.158 Sum_probs=101.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCCCceeEEEEc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYPRTYDLIHAH 422 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p~s~Dlv~~~ 422 (506)
+...+..+|||+|||+|.++..|++.. ...+++++|. +.|++.|.++ |+...+...+.++. .+|..||+|++.
T Consensus 178 ~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~ 255 (374)
T 1qzz_A 178 YDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS 255 (374)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEE
T ss_pred CCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEe
Confidence 344556799999999999999998752 1258999999 8999988875 33222333344442 356569999999
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeC--h-h------------------------hHHHHHHHHhcCCceEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--V-D------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~--~-~------------------------~~~~~~~~~~~~~w~~~ 475 (506)
++++++.+ .....+|.++.|+|||||+++|.|. . + ..+++++++.+.+|++.
T Consensus 256 ~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~ 334 (374)
T 1qzz_A 256 FVLLNWSD-EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA 334 (374)
T ss_dssp SCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEE
T ss_pred ccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceE
Confidence 99985431 1224899999999999999999876 2 1 34678889999999866
Q ss_pred EeecCCCCC--CCeEEEEEEecc
Q 010592 476 MVDHEDGPL--VPEKILVAVKQY 496 (506)
Q Consensus 476 ~~~~~~~~~--~~~~~l~~~k~~ 496 (506)
.+....+.. ....++.++|.=
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 335 SERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEEECCSSCSSCEEEEEEEECC
T ss_pred EEEECCCCcccCCcEEEEEEECc
Confidence 443332221 012678888753
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=115.34 Aligned_cols=123 Identities=10% Similarity=-0.052 Sum_probs=84.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccc---cCCCCCCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCE---AFSTYPRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~---~~~~~p~s~Dlv~ 420 (506)
+...+..+|||+|||+|.++.+|++.-.....|+++|.+++|++.+.++- .+..+..-.. ..+..++++|+|+
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf 152 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLY 152 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEE
Confidence 44455678999999999999999874223368999999999999877652 2222211111 1223448999998
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------hhHHHHHHHHhcCCceEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------~~~~~~~~~~~~~~w~~~ 475 (506)
+.. . +..+...+|.|+.|+|||||.++|.+.. .......+.++..+++..
T Consensus 153 ~d~--~---~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~ 212 (233)
T 4df3_A 153 ADV--A---QPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIK 212 (233)
T ss_dssp ECC--C---CTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEE
T ss_pred Eec--c---CChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEE
Confidence 732 2 3346678999999999999999996422 123334455677788754
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=119.45 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC-----CCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS-----RAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~-----~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..|++. .++++|+++.++..+.... ...++.+.+.|...+++.. .+||+|++..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEEcc
Confidence 4458999999999999999886 5889999875554333221 2235778888887655332 2499999999
Q ss_pred cccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 175 CLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++|+.. +...+++++.++|||||++++...
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9877543 348999999999999999888754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=109.45 Aligned_cols=106 Identities=10% Similarity=-0.074 Sum_probs=77.5
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~s 166 (506)
.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+.+ +.+...|.........+
T Consensus 46 ~~l~~l~~~--~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALAPR--RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQK-NIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHCCC--TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcCCC--CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344555433 3459999999999999999887 48899998876654443 33444544 77888887663223357
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|++...+ +.. +++++.++|||||+++++..
T Consensus 123 ~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 123 PEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp CSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred CCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 9999987643 345 99999999999999999865
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-11 Score=117.26 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=83.3
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCcc------chHHHHHHHHHHcCC--CeEE
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPR------DSHEAQVQFALERGV--PAVI 152 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~------di~~~~~~~a~~~~~--~~~~ 152 (506)
......+.+.+... ++.+|||||||+|.++..++++ .++++|+++. ++..+..+ ....+. .+.+
T Consensus 29 ~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~-~~~~~~~~~v~~ 105 (275)
T 3bkx_A 29 TAHRLAIAEAWQVK--PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNH-LLAGPLGDRLTV 105 (275)
T ss_dssp HHHHHHHHHHHTCC--TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHH-HHTSTTGGGEEE
T ss_pred HHHHHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHH-HHhcCCCCceEE
Confidence 33445566666443 4459999999999999998864 4889999986 66544433 333332 4677
Q ss_pred EEec---cccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 153 GVLG---TIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 153 ~~~d---~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...| ...+|+++++||+|+|..+++|+ +++..+++.+.++++|||++++..
T Consensus 106 ~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYF-ASANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp ECSCCTTTCCGGGTTCCCSEEEEESCGGGS-SCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred EECChhhhccCCCCCCCEEEEEEccchhhC-CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 7776 45667788999999999999775 556667777777777799999975
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=119.66 Aligned_cols=145 Identities=13% Similarity=0.111 Sum_probs=102.4
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCCCceeEE
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYPRTYDLI 419 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p~s~Dlv 419 (506)
+..+...+..+|||+|||+|.++..|++.. ....++++|. +.+++.|.++ |+...+.....++. .+|..||+|
T Consensus 195 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v 272 (369)
T 3gwz_A 195 AAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVY 272 (369)
T ss_dssp HHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEE
T ss_pred HHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEE
Confidence 334555667899999999999999998752 2257899999 8999988864 33222333334442 345689999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------------------hhHHHHHHHHhcCCceEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------~~~~~~~~~~~~~~w~~~ 475 (506)
++.++++++. ......+|.++.|+|||||+|+|.|.. ...+++++++++.+|+..
T Consensus 273 ~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 351 (369)
T 3gwz_A 273 LIKHVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVE 351 (369)
T ss_dssp EEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEE
T ss_pred EhhhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEE
Confidence 9999997443 112237999999999999999996532 125778899999999976
Q ss_pred EeecCCCCCCCeEEEEEEe
Q 010592 476 MVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~k 494 (506)
.+....+ ...-++.|+|
T Consensus 352 ~~~~~~~--~~~svie~~~ 368 (369)
T 3gwz_A 352 RSLPCGA--GPVRIVEIRR 368 (369)
T ss_dssp EEEECSS--SSEEEEEEEE
T ss_pred EEEECCC--CCcEEEEEEe
Confidence 5543111 2466777776
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=116.05 Aligned_cols=121 Identities=11% Similarity=0.021 Sum_probs=81.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc---------CccceeccccccCCC-----CC-Cce
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---------GLIGIYHDWCEAFST-----YP-RTY 416 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---------g~~~~~~~~~~~~~~-----~p-~s~ 416 (506)
...+|||||||+|.++..|++.. ...+|+++|.++.|+..|.++ .....+...+.++.. ++ ++|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 34579999999999999998752 125899999999999988653 111222233333332 33 899
Q ss_pred eEEEEccccccc-----cCcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhcCC-ce
Q 010592 417 DLIHAHGLFSLY-----KDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMR-WD 473 (506)
Q Consensus 417 Dlv~~~~~~~~~-----~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~-w~ 473 (506)
|.|++...-.+. ..+.....+|.++.|+|||||.|+|. |...+.+.+.+.+.... |.
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~ 188 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE 188 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 999873221111 11112257999999999999999985 55567777777766655 55
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=112.39 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCChhHHHHhh--C--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC---CCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA---SRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~--~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~---~~sfDlV~~~ 173 (506)
.+.+|||||||+|.++..|+. . .++++|+++.++..+.... ...+. ++.+...++..++++ +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLS-EALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 345999999999999998884 2 4899999987765544333 33344 477888888777754 6799999996
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+ .+...+++++.++|||||+|++..
T Consensus 149 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 149 AV-----ARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cc-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 52 456899999999999999999863
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-11 Score=120.29 Aligned_cols=139 Identities=16% Similarity=0.248 Sum_probs=99.3
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGL 424 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~ 424 (506)
.+..+|||+|||+|.++..|++.. ...+++++|.+ .|++.|.++ |+...+...+.++.. ++..||+|++.++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~ 241 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNF 241 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcch
Confidence 456789999999999999998752 12589999999 999988875 332223333444433 4456999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---------------------------hHHHHHHHHhcCCceEEEe
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
++++. ..+...+|.++.|+|||||+++|.|... ..+++++++++.+|+...+
T Consensus 242 l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~ 320 (335)
T 2r3s_A 242 LHHFD-VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL 320 (335)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred hccCC-HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence 88543 1245689999999999999999975321 2577888999999986654
Q ss_pred ecCCCCCCCeEEEEEEec
Q 010592 478 DHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 478 ~~~~~~~~~~~~l~~~k~ 495 (506)
....++ ..+++++++
T Consensus 321 ~~~~~~---~~~i~~~~~ 335 (335)
T 2r3s_A 321 HSLPTT---QQQVIVAYK 335 (335)
T ss_dssp ECCTTS---SSEEEEEEC
T ss_pred EECCCC---ceeEEEecC
Confidence 433332 346666653
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=118.43 Aligned_cols=124 Identities=14% Similarity=0.028 Sum_probs=80.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCC-cccHHHH---Hhc----CccceeccccccCCCCC----CceeEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLAD-KNTLGVI---YER----GLIGIYHDWCEAFSTYP----RTYDLI 419 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~-~~~l~~~---~~r----g~~~~~~~~~~~~~~~p----~s~Dlv 419 (506)
...+|||||||+|.++..|++.. ...+|+++|.| +.|+++| .++ |+ ..+...+.+...+| +.+|.|
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEEE
Confidence 35689999999999999998532 23789999999 7788876 443 32 22233344444444 556666
Q ss_pred EEccccccc--cCcCCHHHHHHHHhhhccCCcEEEEEeC-------h------------hhH--HHHHHHHhcCCceEEE
Q 010592 420 HAHGLFSLY--KDKCNIEDILLEMDRILRPEGAIIIRDE-------V------------DEI--IKVKKIVGGMRWDTKM 476 (506)
Q Consensus 420 ~~~~~~~~~--~~~~~~~~~l~e~~RvLrPgG~~ii~d~-------~------------~~~--~~~~~~~~~~~w~~~~ 476 (506)
+++..+... ..+.+...+|.|+.|+|||||+++|... . .+. +++.+.+.+.+|++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence 653322211 1122345789999999999999999111 0 011 1388889999999664
Q ss_pred e
Q 010592 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
.
T Consensus 182 ~ 182 (225)
T 3p2e_A 182 V 182 (225)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-12 Score=125.33 Aligned_cols=122 Identities=12% Similarity=0.171 Sum_probs=88.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc--------------------------------
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-------------------------------- 399 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-------------------------------- 399 (506)
...+|||+|||+|.++..|++.- ....|+++|.++.|++.|.++.-.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 35689999999999999998751 124899999999999999886210
Q ss_pred -----------------------------ceeccccccCC--------CCCCceeEEEEcccccccc---CcCCHHHHHH
Q 010592 400 -----------------------------GIYHDWCEAFS--------TYPRTYDLIHAHGLFSLYK---DKCNIEDILL 439 (506)
Q Consensus 400 -----------------------------~~~~~~~~~~~--------~~p~s~Dlv~~~~~~~~~~---~~~~~~~~l~ 439 (506)
..+...+.++. ..+++||+|+|.+++.+.. ...++..+|.
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 12222233332 2348999999988886442 3446788999
Q ss_pred HHhhhccCCcEEEEEeCh-----------h-----------hHHHHHHHHhc--CCceE
Q 010592 440 EMDRILRPEGAIIIRDEV-----------D-----------EIIKVKKIVGG--MRWDT 474 (506)
Q Consensus 440 e~~RvLrPgG~~ii~d~~-----------~-----------~~~~~~~~~~~--~~w~~ 474 (506)
++.|+|||||+|+|.... + ..+.+..++.+ .+++.
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~ 263 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSS 263 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCE
T ss_pred HHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceE
Confidence 999999999999996421 0 12457777887 89964
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.5e-11 Score=122.29 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=99.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC----CeEEEEecc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV----PAVIGVLGT 157 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~----~~~~~~~d~ 157 (506)
+.-...+.+.++... +.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..++ .+.+...|.
T Consensus 208 d~~~~~ll~~l~~~~--~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~-~ngl~~~~~v~~~~~D~ 284 (375)
T 4dcm_A 208 DIGARFFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINNA 284 (375)
T ss_dssp CHHHHHHHHTCCCSC--CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCGGGGGGEEEEECST
T ss_pred cHHHHHHHHhCcccC--CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHH-HcCCCcCceEEEEechh
Confidence 333344566664332 358999999999999999876 48999999877755554433 3332 366677777
Q ss_pred ccCCCCCCCeeEEEEcCccccc---CCCh-HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHH
Q 010592 158 IKMPYASRAFDMAHCSRCLIPW---GAND-GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEI 233 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~---~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l 233 (506)
.. ++++++||+|+|+..+++. .... ..+++++.++|||||.++++.+.... + ...+++.
T Consensus 285 ~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~-------------~---~~~l~~~ 347 (375)
T 4dcm_A 285 LS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLD-------------Y---FHKLKKI 347 (375)
T ss_dssp TT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSC-------------H---HHHHHHH
T ss_pred hc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcC-------------H---HHHHHHh
Confidence 65 5677899999999887542 1222 46899999999999999998654311 0 1223333
Q ss_pred HHhcceeeccccCceEEEEecC
Q 010592 234 ANLLCWEKKSEKGEIAVWQKKV 255 (506)
Q Consensus 234 ~~~~~w~~~~~~~~~~i~~kp~ 255 (506)
.. ..+.+.++..+.|++...
T Consensus 348 fg--~~~~~a~~~~F~V~~~~~ 367 (375)
T 4dcm_A 348 FG--NCTTIATNNKFVVLKAVK 367 (375)
T ss_dssp HS--CCEEEEECSSEEEEEEEC
T ss_pred cC--CEEEEeeCCCEEEEEEcC
Confidence 33 256677777888887655
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=123.97 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=78.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----------cceeccccccCCC------C---
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEAFST------Y--- 412 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----------~~~~~~~~~~~~~------~--- 412 (506)
...+|||+|||+|.++..|++.+ ..+|+++|.++.|++.|.++.. ...+...+.++.. +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 35689999999999999998754 3589999999999999987631 0122222333322 2
Q ss_pred CCceeEEEEccccccc-cCcCCHHHHHHHHhhhccCCcEEEEEeChh
Q 010592 413 PRTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD 458 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~ 458 (506)
+++||+|.|+.++++. .+..++..+|.++.|+|||||++++.....
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 2599999999888765 444456789999999999999999987653
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-10 Score=111.89 Aligned_cols=146 Identities=11% Similarity=0.086 Sum_probs=98.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-------ceeccccccCCCC--------
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-------GIYHDWCEAFSTY-------- 412 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-------~~~~~~~~~~~~~-------- 412 (506)
+......+|||+|||+|.++..|+++. ...+|+++|.++.|++.|.++-.. ..+...+.++..+
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~ 110 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG 110 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc
Confidence 344445689999999999999988753 136899999999999999875311 1122334454433
Q ss_pred --CCceeEEEEccccccc---------------cCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 413 --PRTYDLIHAHGLFSLY---------------KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 413 --p~s~Dlv~~~~~~~~~---------------~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
+++||+|.++.-|... ...+.++.+|.++.++|||||+|++.-......++...+++. |...
T Consensus 111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~~ 189 (260)
T 2ozv_A 111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGGL 189 (260)
T ss_dssp CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEEE
T ss_pred cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCce
Confidence 4899999997444321 123457889999999999999999987777677777777764 7643
Q ss_pred Eeec---CCCCCCCeEEEEEEec
Q 010592 476 MVDH---EDGPLVPEKILVAVKQ 495 (506)
Q Consensus 476 ~~~~---~~~~~~~~~~l~~~k~ 495 (506)
.+.. ..+.....+++.++|.
T Consensus 190 ~i~~v~~~~~~~~~~~lv~~~k~ 212 (260)
T 2ozv_A 190 EITLIHPRPGEDAVRMLVTAIKG 212 (260)
T ss_dssp EEEEEESSTTSCCCEEEEEEEET
T ss_pred EEEEEcCCCCCCceEEEEEEEeC
Confidence 2211 2222234566777773
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-11 Score=116.68 Aligned_cols=120 Identities=11% Similarity=0.056 Sum_probs=88.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----CccceeccccccCCC-CC-CceeEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDWCEAFST-YP-RTYDLI 419 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~~~~~~~-~p-~s~Dlv 419 (506)
.+......+|||+|||+|.++..|++.-....+|+++|.++.+++.|.++ |. ..+...+.++.. ++ ++||+|
T Consensus 105 ~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~fD~V 183 (275)
T 1yb2_A 105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISDQMYDAV 183 (275)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCSCCEEEE
T ss_pred HcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcCCCccEE
Confidence 34445567899999999999999987400125899999999999988876 32 222222344332 33 789999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~ 475 (506)
.+ +..+...+|.++.|+|||||++++.+... ..+.+.+.+...+|...
T Consensus 184 i~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 184 IA--------DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp EE--------CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEE
T ss_pred EE--------cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEE
Confidence 98 44456789999999999999999988764 66777777888888754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=116.64 Aligned_cols=120 Identities=8% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCC-C-CCceeEEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FST-Y-PRTYDLIHA 421 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~-~-p~s~Dlv~~ 421 (506)
....|||+|||+|.++..|++.. ...+|+++|.+++|+..|.++ |+ ..+...+.+ ++. + +++||.|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 34579999999999999998642 125799999999999988765 33 223333333 221 3 499999998
Q ss_pred ccccccccC-----cCCHHHHHHHHhhhccCCcEEEEEe-ChhhHHHHHHHHhcC-Cce
Q 010592 422 HGLFSLYKD-----KCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGM-RWD 473 (506)
Q Consensus 422 ~~~~~~~~~-----~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~-~w~ 473 (506)
.....+... +..-..+|.++.|+|||||.|+|.. ...+.+.+..++... +|+
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~ 170 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYK 170 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcc
Confidence 533321111 1112369999999999999999964 455677777766543 465
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=116.17 Aligned_cols=144 Identities=16% Similarity=0.163 Sum_probs=100.2
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCC-CCCCceeE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFS-TYPRTYDL 418 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~-~~p~s~Dl 418 (506)
++..+...+ .+|||+|||+|.++..|++.. ....++++|. +.|++.|.++- +...+.....++. .+|.+||+
T Consensus 160 ~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~ 236 (334)
T 2ip2_A 160 IPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDI 236 (334)
T ss_dssp HHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSE
T ss_pred HHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCE
Confidence 333344445 899999999999999998752 1258999999 89999988752 2112222233332 35578999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-------------------------hhHHHHHHHHhcCCce
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------------------DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------------------------~~~~~~~~~~~~~~w~ 473 (506)
|++.++++++. ......+|.++.|+|||||+++|.|.. ...+++++++++.+++
T Consensus 237 v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 315 (334)
T 2ip2_A 237 YLLSRIIGDLD-EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFA 315 (334)
T ss_dssp EEEESCGGGCC-HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred EEEchhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCc
Confidence 99999998543 113348999999999999999997532 0256778899999998
Q ss_pred EEEeecCCCCCCCeEEEEEEe
Q 010592 474 TKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~k 494 (506)
...+....+ ..-++.++|
T Consensus 316 ~~~~~~~~~---~~~~i~~~~ 333 (334)
T 2ip2_A 316 VERIVDLPM---ETRMIVAAR 333 (334)
T ss_dssp EEEEEEETT---TEEEEEEEE
T ss_pred eeEEEECCC---CCEEEEEEe
Confidence 664433222 356777776
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.2e-11 Score=112.77 Aligned_cols=140 Identities=9% Similarity=0.017 Sum_probs=85.9
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH----HHHHhcC-ccceecccccc--CCCCCCceeEEEEc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL----GVIYERG-LIGIYHDWCEA--FSTYPRTYDLIHAH 422 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l----~~~~~rg-~~~~~~~~~~~--~~~~p~s~Dlv~~~ 422 (506)
..+..+|||+|||+|+++.+|++.-.....|+++|.++.|+ +.+.+|. +.....|-... +...+.+||+|+++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 45567899999999999999886311124899999999875 4555553 21222111110 11234799999996
Q ss_pred cccccccCcCCHHHHH-HHHhhhccCCcEEEEEe----------ChhhHHHHHHHHhcCCceEEE-eecCCCCCCCeEEE
Q 010592 423 GLFSLYKDKCNIEDIL-LEMDRILRPEGAIIIRD----------EVDEIIKVKKIVGGMRWDTKM-VDHEDGPLVPEKIL 490 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l-~e~~RvLrPgG~~ii~d----------~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~l 490 (506)
..+ .+...+| ..+.|+|||||+|++.- ..+........+++.++++.. .+.+. -..+..++
T Consensus 154 ~a~------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p-~~~~h~~v 226 (232)
T 3id6_C 154 IAQ------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDP-YDKDHAIV 226 (232)
T ss_dssp CCC------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTT-TCSSCEEE
T ss_pred CCC------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCC-CcCceEEE
Confidence 433 3444455 45566999999999852 112334455566677787653 33321 11367888
Q ss_pred EEEecc
Q 010592 491 VAVKQY 496 (506)
Q Consensus 491 ~~~k~~ 496 (506)
+++|++
T Consensus 227 ~~~~~~ 232 (232)
T 3id6_C 227 LSKYKG 232 (232)
T ss_dssp EEEEC-
T ss_pred EEEeCC
Confidence 998863
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9e-11 Score=115.39 Aligned_cols=139 Identities=11% Similarity=0.107 Sum_probs=96.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C-CCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y-PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~-p~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|.++..|+... ...+|+++|.|+.+++.|.++ |+. .+...+.++.. + +++||+|.++.-+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQQFAMIVSNPPY 186 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTTCCEEEEEECCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcccCCccEEEECCCC
Confidence 34589999999999999998531 125899999999999988876 321 22223333322 3 4799999997433
Q ss_pred c-------------cccCc---------CCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCC
Q 010592 426 S-------------LYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 426 ~-------------~~~~~---------~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 483 (506)
. +..+. ..+..++.++.++|||||++++.......+.+++++++.+|+...+..+ .
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d--~ 264 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD--Y 264 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC--T
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEec--C
Confidence 2 11111 1246799999999999999999887777788999999999973322212 1
Q ss_pred CCCeEEEEEEe
Q 010592 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
.....+++++|
T Consensus 265 ~g~~r~~~~~~ 275 (276)
T 2b3t_A 265 GDNERVTLGRY 275 (276)
T ss_dssp TSSEEEEEEEC
T ss_pred CCCCcEEEEEE
Confidence 13567777764
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=111.45 Aligned_cols=98 Identities=15% Similarity=-0.032 Sum_probs=74.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC---CCCeeEEEE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA---SRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~---~~sfDlV~~ 172 (506)
..+.+|||||||+|..+..|+.. .|+++|+++.++..+... +...++ ++.+...++..++.. .++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERA-IEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 34669999999999998888754 489999998776544433 333444 477888888777643 479999999
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+ .+...+++++.++|||||+|++..
T Consensus 158 ~a~-----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 158 RAV-----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ESS-----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCc-----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 643 235789999999999999998754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-11 Score=117.77 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=88.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..+++.+.. .|+++|.++.|++.|.++ |+...+...+.++..+ +++||+|+++...
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~- 202 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV- 202 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch-
Confidence 467999999999999999886532 799999999999988775 4322233344555444 4899999984332
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeCh-------hhHHHHHHHHhcCCceEEE
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------~~~~~~~~~~~~~~w~~~~ 476 (506)
....++.++.|+|||||.+++.+.. ...+.+.+.+++.+|++..
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 3356899999999999999996543 3568888999999999776
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=126.98 Aligned_cols=102 Identities=7% Similarity=0.070 Sum_probs=77.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----------CccceeccccccCCC---CCCceeE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----------GLIGIYHDWCEAFST---YPRTYDL 418 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----------g~~~~~~~~~~~~~~---~p~s~Dl 418 (506)
...+|||+|||+|.++..|++.+....+|+++|.++.|++.|.+| |+ ..+...+.++.. .+++||+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCeeE
Confidence 456899999999999999998753335899999999999999873 22 223333344433 3489999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
|+|..+|+|+.+ .....++.++.|+|||| .++|.+.
T Consensus 800 VV~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 800 GTCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEEec
Confidence 999999986652 12346899999999999 8888654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.9e-11 Score=120.00 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||||||+|.++..+++. .|+++|+++ ++.. +.+.+...+.. +.+...++..+++++++||+|++..+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~-a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDY-AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHH-HHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHH-HHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 3458999999999999999987 489999994 5544 34445555554 788899999999988999999997643
Q ss_pred cc--cCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 177 IP--WGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 177 ~~--~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+ .......++.++.|+|||||+++..
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 22 2345588999999999999999853
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=104.40 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=80.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~ 162 (506)
....+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+. .+.+...|... ++
T Consensus 21 ~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~~-~~ 96 (183)
T 2yxd_A 21 EEIRAVSIGKLNLN--KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNL-AKFNIKNCQIIKGRAED-VL 96 (183)
T ss_dssp HHHHHHHHHHHCCC--TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHH-HHTTCCSEEEEESCHHH-HG
T ss_pred HHHHHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HHcCCCcEEEEECCccc-cc
Confidence 34444555555433 3459999999999999999875 4889999887665444333 33343 46777777766 66
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++||+|+++.+ .+...+++++.++ |||.+++..+.
T Consensus 97 ~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 97 DKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp GGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred cCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEecc
Confidence 6689999999876 4568899999999 99999998753
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-11 Score=121.76 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAH 422 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~ 422 (506)
......+|||+|||+|.++..+++.+. .+|+++|.+ +|+..|.++ |+...+...+.++.. ++++||+|++.
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~ 136 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISE 136 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEc
Confidence 334456899999999999999998763 389999999 999988765 332212222333333 34899999996
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.+.....+...+..+|.+++|+|||||.+++
T Consensus 137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 137 WMGYFLLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp CCBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred ChhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 6555555555688899999999999999988
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=111.72 Aligned_cols=117 Identities=12% Similarity=0.087 Sum_probs=85.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc-----CccceeccccccCCC--CC-CceeE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDWCEAFST--YP-RTYDL 418 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~~~~~~~--~p-~s~Dl 418 (506)
+......+|||+|||+|.++..|++. + ...+|+++|.++.+++.|.++ |. ..+...+.++.. ++ ++||+
T Consensus 92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~~~D~ 169 (258)
T 2pwy_A 92 LDLAPGMRVLEAGTGSGGLTLFLARAVG-EKGLVESYEARPHHLAQAERNVRAFWQV-ENVRFHLGKLEEAELEEAAYDG 169 (258)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCC-CCEEEEESCGGGCCCCTTCEEE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCEEEEECchhhcCCCCCCcCE
Confidence 34445568999999999999999875 1 124899999999999998876 42 222222233322 33 78999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDT 474 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~ 474 (506)
|++ +..+...+|.++.|+|||||.+++.+... ...++.+.++..+|..
T Consensus 170 v~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 170 VAL--------DLMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp EEE--------ESSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred EEE--------CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 998 34456679999999999999999988754 5666777777788764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=118.48 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=83.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
..|.+.+.+.+... ++.+|||||||+|.++..+++. .++++|+++ ++..+ .+.....+. .+.+...++..+
T Consensus 50 ~~~~~~i~~~~~~~--~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a-~~~~~~~~~~~~i~~~~~d~~~~ 125 (340)
T 2fyt_A 50 ESYRDFIYQNPHIF--KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQA-MDIIRLNKLEDTITLIKGKIEEV 125 (340)
T ss_dssp HHHHHHHHHCGGGT--TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHH-HHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhhhhc--CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHH-HHHHHHcCCCCcEEEEEeeHHHh
Confidence 44555666655332 3459999999999999999886 489999986 65444 344444443 578888899888
Q ss_pred CCCCCCeeEEEEcCccc--ccCCChHHHHHHHHHhcCCCeEEEE
Q 010592 161 PYASRAFDMAHCSRCLI--PWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~--~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
++++++||+|++..+.. +...+...++.++.++|||||.++.
T Consensus 126 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 126 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 88888999999976321 2133347899999999999999983
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-11 Score=109.48 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=71.1
Q ss_pred CCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 103 VRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
+.+|||+|||+|.++..|+++ .++++|+++.++.. ...+.+.+.|... ++++++||+|+++..+++..+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~ 93 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTD 93 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCC
T ss_pred CCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCCCccCCc
Confidence 458999999999999999988 57788887754432 2346677778766 666789999999988754332
Q ss_pred C--------hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 182 N--------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 182 ~--------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ...++.++.+.| |||.+++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 2 257889999999 9999999764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-11 Score=117.00 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC-----------------------------
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV----------------------------- 148 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~----------------------------- 148 (506)
.++.+|||||||+|.++..++.. .++++|+++.++..+..... ..+.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLK-KEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHT-TCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHh-cCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 34568999999999999988876 47888998876654433221 1110
Q ss_pred -Ce-EEEEeccccCC-CCC---CCeeEEEEcCcccccCC---ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 149 -PA-VIGVLGTIKMP-YAS---RAFDMAHCSRCLIPWGA---NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 149 -~~-~~~~~d~~~lp-~~~---~sfDlV~~~~~l~~~~~---~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+ .+...|....+ +++ ++||+|+|+.++++... +...+++++.++|||||+|++..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 14 67777876653 355 89999999999974443 34789999999999999999976
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-11 Score=114.96 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecc-ccCCCC-CCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMPYA-SRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~-~~lp~~-~~sfDlV~~~~~l~ 177 (506)
++.+|||||||+|.++..|++.+ ++++|+++. +++.++++...+.+.+.|. ..+|++ +++||+|+++
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~---- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPE-----LLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR---- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH-----HHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHH-----HHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC----
Confidence 34589999999999999999874 778888764 4455555556688888888 678888 8999999997
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEE
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li 201 (506)
.+...+++++.++|||||.|+
T Consensus 119 ---~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 ---RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---SCCSGGGGGHHHHEEEEEEEE
T ss_pred ---CCHHHHHHHHHHHcCCCcEEE
Confidence 235678999999999999999
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=112.10 Aligned_cols=118 Identities=11% Similarity=0.115 Sum_probs=86.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCC-CceeEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYP-RTYDLI 419 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p-~s~Dlv 419 (506)
.+......+|||+|||+|.++..|++. + ....|+++|.++.+++.|.++ |+...+...+.++. .++ .+||+|
T Consensus 88 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v 166 (255)
T 3mb5_A 88 YAGISPGDFIVEAGVGSGALTLFLANIVG-PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHV 166 (255)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEE
T ss_pred hhCCCCCCEEEEecCCchHHHHHHHHHhC-CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEE
Confidence 344455678999999999999999875 1 125899999999999998876 43221222223332 234 789999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCC--ce
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMR--WD 473 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~--w~ 473 (506)
.+ +..+...+|.++.|+|||||.+++... .....++.+.+++.+ |.
T Consensus 167 ~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~ 215 (255)
T 3mb5_A 167 IL--------DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFM 215 (255)
T ss_dssp EE--------CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBS
T ss_pred EE--------CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 98 445667799999999999999999765 446677777888877 64
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=119.04 Aligned_cols=146 Identities=22% Similarity=0.218 Sum_probs=101.0
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCCCceeEEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYPRTYDLIHA 421 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p~s~Dlv~~ 421 (506)
.+...+..+|||+|||+|.++..|++... ...++.+|. +.|++.|.++ |+...+...+.++. .+|..||+|++
T Consensus 178 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~ 255 (360)
T 1tw3_A 178 AYDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 255 (360)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred hCCCccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEE
Confidence 34445567899999999999999987531 257889999 7999988875 33222333334432 35666999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh--h------------------------hHHHHHHHHhcCCceEE
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--D------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--~------------------------~~~~~~~~~~~~~w~~~ 475 (506)
.++|+++.+ .+...+|.++.|+|||||+++|.|.. + ..+++++++++.+|++.
T Consensus 256 ~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 334 (360)
T 1tw3_A 256 SFVLLNWPD-HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVE 334 (360)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE
T ss_pred cccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEE
Confidence 999985431 12257999999999999999998754 1 24677888999999866
Q ss_pred EeecCCCC--CCCeEEEEEEec
Q 010592 476 MVDHEDGP--LVPEKILVAVKQ 495 (506)
Q Consensus 476 ~~~~~~~~--~~~~~~l~~~k~ 495 (506)
.+....+. .....++.++|+
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 335 EVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEeCCCCcccCccEEEEEEeC
Confidence 44332211 011567888874
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-11 Score=119.88 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=74.3
Q ss_pred CCEEEEECCCCCh----hHHHHhhC--------CcEEEecCccchHHHHHHHH--------------H-----H---cC-
Q 010592 103 VRTALDTGCGVAS----WGAYLWSR--------NVIAMSFAPRDSHEAQVQFA--------------L-----E---RG- 147 (506)
Q Consensus 103 ~~~VLDiGCG~G~----~~~~L~~~--------~v~~vdis~~di~~~~~~~a--------------~-----~---~~- 147 (506)
..+|||+|||+|. ++..|++. .|+++|+|+.++..+....- + . .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4589999999997 55555542 47899998877755543210 0 0 00
Q ss_pred --------CCeEEEEeccccCCCC-CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 148 --------VPAVIGVLGTIKMPYA-SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 --------~~~~~~~~d~~~lp~~-~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.|.+.|....|++ .++||+|+|..+++|+.+.. ..++.++.+.|+|||+|++..
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1367778888776665 57899999999998875422 789999999999999999854
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=114.79 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=75.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH-----HcC-CCeEEEEecccc-CC--CCCCCee
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL-----ERG-VPAVIGVLGTIK-MP--YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~-----~~~-~~~~~~~~d~~~-lp--~~~~sfD 168 (506)
...+|||||||+|.++..|++. .++++|+++.++..+...... ..+ .++.+...|+.. ++ +++++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 3458999999999999999875 489999998877655543322 122 347788888875 66 7889999
Q ss_pred EEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 169 MAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 169 lV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.|++.+.- +|... ...+++++.++|||||.|++.+.
T Consensus 126 ~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 126 KMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99986542 33211 14799999999999999999864
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=118.28 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=85.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
..|.+.+.+.+.. .++.+|||||||+|.++..+++. .|+++|++ .++..+ .+.+...+.. +.+...++..+
T Consensus 49 ~~~~~~i~~~~~~--~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a-~~~~~~~~~~~~v~~~~~d~~~~ 124 (376)
T 3r0q_C 49 DAYFNAVFQNKHH--FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHA-RALVKANNLDHIVEVIEGSVEDI 124 (376)
T ss_dssp HHHHHHHHTTTTT--TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHH-HHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHhcccc--CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHH-HHHHHHcCCCCeEEEEECchhhc
Confidence 5555666665533 34569999999999999999887 48999999 677544 4445555544 78888899888
Q ss_pred CCCCCCeeEEEEcCcccccC--CChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWG--ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~--~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++ ++||+|++..+.+... .....++.++.++|||||+|+++.
T Consensus 125 ~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 125 SLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred CcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 877 8999999976443322 345789999999999999998753
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=111.48 Aligned_cols=137 Identities=12% Similarity=-0.029 Sum_probs=85.9
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH----HHHhcCccceeccccccCC------CCCCceeEE
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCEAFS------TYPRTYDLI 419 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~~~~~~~~~~~------~~p~s~Dlv 419 (506)
.....+|||+|||+|.++..|++.-.....|+++|.++.|++ .|..+..+. ..+.++. ..+.+||+|
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~---~~~~d~~~~~~~~~~~~~~D~V 151 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNII---PVIEDARHPHKYRMLIAMVDVI 151 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEE---EECSCTTCGGGGGGGCCCEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeE---EEEcccCChhhhcccCCcEEEE
Confidence 334568999999999999999875101147999999977544 444432111 1223332 234899999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-----------hHHHHHHHHhcCCceEEEeecCCCCCCCeE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-----------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEK 488 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 488 (506)
+++.. .......++.++.|+|||||.++|.-... ...+ .+++.+.+|++......+.-.....
T Consensus 152 ~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~~~~~~~~~~ 225 (233)
T 2ipx_A 152 FADVA-----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQLTLEPYERDHA 225 (233)
T ss_dssp EECCC-----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEEECTTTSSSEE
T ss_pred EEcCC-----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEEecCCccCCcE
Confidence 99433 11222456889999999999999953321 2223 4678888998665322222223467
Q ss_pred EEEEEec
Q 010592 489 ILVAVKQ 495 (506)
Q Consensus 489 ~l~~~k~ 495 (506)
+++++|+
T Consensus 226 ~v~~~~~ 232 (233)
T 2ipx_A 226 VVVGVYR 232 (233)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7777763
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-11 Score=112.17 Aligned_cols=112 Identities=12% Similarity=0.154 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~ 159 (506)
..+.+.+.+...++ ...+|||+|||+|.++..++.. .++++|+++.++.-+..+ +...|+...+...|...
T Consensus 35 ~ld~fY~~~~~~l~----~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~-~~~~g~~~~v~~~d~~~ 109 (200)
T 3fzg_A 35 TLNDFYTYVFGNIK----HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSI-IGKLKTTIKYRFLNKES 109 (200)
T ss_dssp GHHHHHHHHHHHSC----CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHH-HHHSCCSSEEEEECCHH
T ss_pred hHHHHHHHHHhhcC----CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHhcCCCccEEEecccc
Confidence 44666677777772 2458999999999999999654 588999998777544433 44456664444456543
Q ss_pred CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEE
Q 010592 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
. .+.++||+|++..++|++ ++.+..+.++.+.|+|||+|+-
T Consensus 110 ~-~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 110 D-VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp H-HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEE
T ss_pred c-CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEE
Confidence 3 456789999999999877 6666777799999999998875
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=109.43 Aligned_cols=139 Identities=8% Similarity=-0.032 Sum_probs=86.9
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCC------CCCceeEEEEc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST------YPRTYDLIHAH 422 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~------~p~s~Dlv~~~ 422 (506)
.....+|||+|||+|.++..|++.-.....|+++|.++.|++.+.++.- ...+...+.++.. .+.+||+|+++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 3445689999999999999998641001479999999988887765421 1112222233322 34789999984
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-----------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-----------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILV 491 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~ 491 (506)
.. .......+|.++.|+|||||++++.-... ..++++.+ ... ++......-..-.....+++
T Consensus 151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~ 223 (227)
T 1g8a_A 151 VA-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFV 223 (227)
T ss_dssp CC-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEE
T ss_pred CC-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEE
Confidence 33 11222345999999999999999952111 12566666 555 88653322211123467888
Q ss_pred EEec
Q 010592 492 AVKQ 495 (506)
Q Consensus 492 ~~k~ 495 (506)
++|+
T Consensus 224 ~~~~ 227 (227)
T 1g8a_A 224 VRKT 227 (227)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8874
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-11 Score=113.28 Aligned_cols=102 Identities=13% Similarity=0.081 Sum_probs=76.0
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccCC--CCCCC-eeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKMP--YASRA-FDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~lp--~~~~s-fDlV~~~ 173 (506)
+.+|||+|||+|.++..++.+ .|+++|+++.++..+..+. ...+. .+.+...|...+. +++++ ||+|++.
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNL-QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH-HHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHH-HHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 458999999999999987665 3899999987775554433 33444 5778888876543 24678 9999998
Q ss_pred CcccccCCChHHHHHHH--HHhcCCCeEEEEEcCCC
Q 010592 174 RCLIPWGANDGRYMIEV--DRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~--~rvLkPGG~li~~~p~~ 207 (506)
..+ + ..+...++.++ .++|||||.++++..+.
T Consensus 133 ~~~-~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPF-H-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCS-S-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCC-C-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 764 3 33447888888 67899999999987554
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=117.81 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=96.3
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--cCccceeccccccC-CCCCCceeEEE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--RGLIGIYHDWCEAF-STYPRTYDLIH 420 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--rg~~~~~~~~~~~~-~~~p~s~Dlv~ 420 (506)
++..+......+|||||||+|.++..|++.. ....++.+|.+ .++..+.. .++...+.....++ ...| +||+|+
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~p-~~D~v~ 252 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFLREVP-HADVHV 252 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTTTCCC-CCSEEE
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCCCCCC-CCcEEE
Confidence 3444555667899999999999999998742 13578999985 55541110 12222233333444 3456 999999
Q ss_pred EccccccccCcCCH--HHHHHHHhhhccCCcEEEEEeCh-------------------------hhHHHHHHHHhcCCce
Q 010592 421 AHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRDEV-------------------------DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 421 ~~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d~~-------------------------~~~~~~~~~~~~~~w~ 473 (506)
+.++|+++ .+. ..+|.++.|+|||||+|+|.|.. ...+++++++++.+|+
T Consensus 253 ~~~vlh~~---~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 329 (348)
T 3lst_A 253 LKRILHNW---GDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLR 329 (348)
T ss_dssp EESCGGGS---CHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEE
T ss_pred EehhccCC---CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCc
Confidence 99999844 344 58999999999999999997631 1356788999999999
Q ss_pred EEEeecCCCCCCCeEEEEEEe
Q 010592 474 TKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~k 494 (506)
...+... + ...-++.+++
T Consensus 330 ~~~~~~~-~--~~~~vie~~p 347 (348)
T 3lst_A 330 LDRVVGT-S--SVMSIAVGVP 347 (348)
T ss_dssp EEEEEEC-S--SSCEEEEEEE
T ss_pred eEEEEEC-C--CCcEEEEEEe
Confidence 7654442 2 2344555554
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=112.68 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=84.0
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010592 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 81 f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~ 155 (506)
|..+.+.. .+..++... .++.+|||+|||+|.++..++++ .++++|+++.++..+..+. ...+. .+.+...
T Consensus 31 ~~~~~d~~--ll~~~~~~~-~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~-~~~~~~~~v~~~~~ 106 (259)
T 3lpm_A 31 FSFSIDAV--LLAKFSYLP-IRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSV-AYNQLEDQIEIIEY 106 (259)
T ss_dssp BCCCHHHH--HHHHHCCCC-SSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHH-HHTTCTTTEEEECS
T ss_pred ccCcHHHH--HHHHHhcCC-CCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHH-HHCCCcccEEEEEC
Confidence 33444443 245555432 03459999999999999999887 4889999887665444333 33344 3778888
Q ss_pred ccccCC--CCCCCeeEEEEcCccccc----C---------------CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 156 GTIKMP--YASRAFDMAHCSRCLIPW----G---------------ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 156 d~~~lp--~~~~sfDlV~~~~~l~~~----~---------------~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|...++ ++.++||+|+++..+... . .+...+++++.++|||||+|++..++.
T Consensus 107 D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 179 (259)
T 3lpm_A 107 DLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE 179 (259)
T ss_dssp CGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence 887665 567899999998654322 0 012468999999999999999986543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-11 Score=123.36 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=89.3
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---C-cEEEecCccchHHHHHHH------HHHcC--
Q 010592 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---N-VIAMSFAPRDSHEAQVQF------ALERG-- 147 (506)
Q Consensus 80 ~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~-v~~vdis~~di~~~~~~~------a~~~~-- 147 (506)
.|+......+..+.+.+... ++.+|||||||+|.++..++.. . ++++|+++.++..+.... +...+
T Consensus 153 vYGEt~~~~i~~il~~l~l~--~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~ 230 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIKMT--DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 230 (438)
T ss_dssp GGGGTHHHHHHHHHHHHCCC--TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred ccCCCCHHHHHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45555666777777777554 3459999999999999888753 3 899999886554443321 22223
Q ss_pred -CCeEEEEeccccCCCCC--CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 148 -VPAVIGVLGTIKMPYAS--RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 -~~~~~~~~d~~~lp~~~--~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++.+..+|+..+|+.+ .+||+|+++..+ +.++....|.++.|+|||||.|++..
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~--F~pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFA--FGPEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCTT--CCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred CCCeEEEECcccCCccccccCCccEEEEcccc--cCchHHHHHHHHHHcCCCCcEEEEee
Confidence 35788889998888754 479999998754 34556788999999999999999864
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=110.30 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=71.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CC-CCCCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FS-TYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~-~~p~s~Dlv~~~~ 423 (506)
..+|||+|||+|.++..|++.. ...+|+++|.++.|++.|.++ |+...+...+.+ ++ ..+++||+|++..
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 4689999999999999999831 136899999999999988875 332122222222 23 3468999999843
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
. ......++.++.|+|||||++++.+
T Consensus 151 ~------~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 151 A------KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp T------SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred c------HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2 3457789999999999999999943
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-12 Score=128.00 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhhcCCCCCceEEeecCc------ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC
Q 010592 336 KHVNAYKKINRLLDSGRYRNIMDMNAG------FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF 409 (506)
Q Consensus 336 ~~v~~y~~~~~~~~~~~~r~vLD~gcG------~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~ 409 (506)
.....|.+++..+... ..+||||||| +|+.+..|.+.-.....|+++|++++|.. ...-+..+..-++++
T Consensus 201 ~y~~~Ye~lL~~l~~~-~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dl 276 (419)
T 3sso_A 201 WFTPHYDRHFRDYRNQ-QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDA 276 (419)
T ss_dssp BCHHHHHHHHGGGTTS-CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCH
T ss_pred hHHHHHHHHHHhhcCC-CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEeccccc
Confidence 3456677777655433 4789999999 77777777653111258999999999841 111112221112233
Q ss_pred CCC------CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------------hhHHHHHH
Q 010592 410 STY------PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------DEIIKVKK 465 (506)
Q Consensus 410 ~~~------p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------~~~~~~~~ 465 (506)
++. +++||+|+|+.. + +..+...+|.|+.|+|||||+++|.|.. ..++.+++
T Consensus 277 pf~~~l~~~d~sFDlVisdgs-H---~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~ 352 (419)
T 3sso_A 277 EFLDRIARRYGPFDIVIDDGS-H---INAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKS 352 (419)
T ss_dssp HHHHHHHHHHCCEEEEEECSC-C---CHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHH
T ss_pred chhhhhhcccCCccEEEECCc-c---cchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHH
Confidence 333 489999999643 2 2346678999999999999999997643 26788888
Q ss_pred HHhcCCce
Q 010592 466 IVGGMRWD 473 (506)
Q Consensus 466 ~~~~~~w~ 473 (506)
+++.++|.
T Consensus 353 l~D~l~~~ 360 (419)
T 3sso_A 353 LIDAIQHQ 360 (419)
T ss_dssp HHHHHTGG
T ss_pred HHHHhccc
Confidence 98888876
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-11 Score=109.35 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=80.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CC-
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MP- 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~-lp- 161 (506)
+.+.+.+.+.+.....++.+|||+|||+|.++..+++.+ ++++|+++.++..+..+... .+.++.+...|... ++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~ 103 (171)
T 1ws6_A 25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRR-TGLGARVVALPVEVFLPE 103 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH-HTCCCEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHH-cCCceEEEeccHHHHHHh
Confidence 444444444442111134589999999999999998874 78899988766555443333 34467777777654 22
Q ss_pred C--CCCCeeEEEEcCcccccCCChHHHHHHHH--HhcCCCeEEEEEcCCC
Q 010592 162 Y--ASRAFDMAHCSRCLIPWGANDGRYMIEVD--RVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~--~~~sfDlV~~~~~l~~~~~~~~~~l~e~~--rvLkPGG~li~~~p~~ 207 (506)
+ ..++||+|+++..++ .....+++.+. ++|||||.++++.+..
T Consensus 104 ~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 104 AKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred hhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 1 134899999987653 34466777777 9999999999987655
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=7e-11 Score=109.16 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=75.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C-CCceeEEEEc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y-PRTYDLIHAH 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~-p~s~Dlv~~~ 422 (506)
...+|||+|||+|.++..+++.+. ..|+++|.++.|++.|.++ ++ ..+...+.++.. + +++||+|.++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEEC
Confidence 356899999999999998877652 4799999999999988875 32 222223333222 3 4899999998
Q ss_pred cccccccCcCCHHHHHHHHhh--hccCCcEEEEEeCh
Q 010592 423 GLFSLYKDKCNIEDILLEMDR--ILRPEGAIIIRDEV 457 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~R--vLrPgG~~ii~d~~ 457 (506)
..|.+. ..++..++.++.| +|||||.++|....
T Consensus 121 ~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 121 PPYNVD--SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 776632 1457789999999 99999999997643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=111.11 Aligned_cols=111 Identities=10% Similarity=-0.005 Sum_probs=79.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
....+.+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+ .+.+...|.......
T Consensus 56 ~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~-~v~~~~~d~~~~~~~ 131 (231)
T 1vbf_A 56 LNLGIFMLDELDLH--KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL-SYYN-NIKLILGDGTLGYEE 131 (231)
T ss_dssp HHHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTCS-SEEEEESCGGGCCGG
T ss_pred HHHHHHHHHhcCCC--CCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHH-hhcC-CeEEEECCccccccc
Confidence 34445666666433 4459999999999999999876 4888998876554333222 2222 577777787663334
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++||+|++..+++++. .++.++|||||++++..++.
T Consensus 132 ~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp GCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcCC
Confidence 67899999999887653 57899999999999987654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.6e-11 Score=110.32 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp-~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+... +...+. .+.+...|...++ +.+++||+|+++
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKK-LTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-HHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 3459999999999999998875 489999988766554443 333343 5778888877765 566899999998
Q ss_pred CcccccC-----C---ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 174 RCLIPWG-----A---NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~-----~---~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..+.+.. . +...+++++.++|||||++++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 6552211 1 124799999999999999999863
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-11 Score=114.30 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=79.2
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+++.+...+ .++.+|||+|||+|.++..+++.+ ++++|+++.++..+.. .+...+..+.+...+... ++++
T Consensus 109 ~~~~~l~~~~----~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~-n~~~~~~~v~~~~~d~~~-~~~~ 182 (254)
T 2nxc_A 109 LALKALARHL----RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVRPRFLEGSLEA-ALPF 182 (254)
T ss_dssp HHHHHHHHHC----CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCCCEEEESCHHH-HGGG
T ss_pred HHHHHHHHhc----CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHH-HHHHcCCcEEEEECChhh-cCcC
Confidence 3444444443 234599999999999999988874 8999999987755544 444455556666666544 2446
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|+++...++ ...++.++.++|||||++++++.
T Consensus 183 ~~fD~Vv~n~~~~~----~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 183 GPFDLLVANLYAEL----HAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp CCEEEEEEECCHHH----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEECCcHHH----HHHHHHHHHHHcCCCCEEEEEee
Confidence 78999999765432 36899999999999999999753
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=115.65 Aligned_cols=111 Identities=10% Similarity=0.038 Sum_probs=82.3
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C---cEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N---VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM 160 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~---v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l 160 (506)
...+.+.+.+... ++.+|||||||+|.++..+++. . |+++|+++.++..+... ....+. ++.+...|....
T Consensus 62 ~~~~~l~~~l~~~--~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 62 SLMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCC--CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCeEEEECChhhc
Confidence 4445666666443 4459999999999999999875 3 99999988766544433 333343 367777888775
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.++++||+|++..+++++. .++.++|||||.+++...+.
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBCBG
T ss_pred cccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEECCC
Confidence 55567899999999887753 67889999999999986543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-10 Score=103.95 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=78.9
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYA 163 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~ 163 (506)
....+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+.... ...+. .+.+...|... +++
T Consensus 21 ~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~-~~~ 96 (192)
T 1l3i_A 21 VRCLIMCLAEPG--KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNL-QRHGLGDNVTLMEGDAPE-ALC 96 (192)
T ss_dssp HHHHHHHHHCCC--TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHH-HHTTCCTTEEEEESCHHH-HHT
T ss_pred HHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHH-HHcCCCcceEEEecCHHH-hcc
Confidence 334455555433 4459999999999999999886 4889999886665444333 23343 56677777654 233
Q ss_pred C-CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 164 S-RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 164 ~-~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ++||+|++..++.+ ...+++++.++|+|||.+++..+
T Consensus 97 ~~~~~D~v~~~~~~~~----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 97 KIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp TSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCCCCEEEECCchHH----HHHHHHHHHHhcCCCcEEEEEec
Confidence 3 58999999876533 47899999999999999999865
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-10 Score=107.21 Aligned_cols=104 Identities=16% Similarity=0.029 Sum_probs=76.9
Q ss_pred CCCEEEEECCC-CChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC-CCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCG-VASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-PYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l-p~~~~sfDlV~~~~~l 176 (506)
++.+|||+||| +|.++..+++. .++++|+++.++..+.. .+...+.++.+...|...+ ++++++||+|+++..+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARR-NIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 45699999999 99999998876 48999999876654443 3444555778888886433 4667899999998765
Q ss_pred cccCCC------------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 177 IPWGAN------------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 177 ~~~~~~------------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++.... ...+++++.++|||||++++..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 432110 267899999999999999997543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=114.08 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=82.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCC---ChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGV---ASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~---G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~ 158 (506)
..+++.+.+.+.. .....+|||||||+ |.++..+.+. .|+++|+|+.++..+..... ....+.+..+|+.
T Consensus 62 ~~~~~~~~~~l~~-~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~ 138 (274)
T 2qe6_A 62 RKVLVRGVRFLAG-EAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVR 138 (274)
T ss_dssp HHHHHHHHHHHHT-TTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTT
T ss_pred hHHHHHHHHHHhh-ccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCC
Confidence 3444555454421 12235899999999 9887666542 58999999877755544332 2245778888875
Q ss_pred cCC-----------CCCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 159 KMP-----------YASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 159 ~lp-----------~~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..+ ++..+||+|+++.+++|+.++ ...+|+++.++|||||+|+++...
T Consensus 139 ~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 139 DPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp CHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 421 233489999999999776553 589999999999999999998643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=109.43 Aligned_cols=136 Identities=17% Similarity=0.058 Sum_probs=89.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCC--CceeEEEEc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYP--RTYDLIHAH 422 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p--~s~Dlv~~~ 422 (506)
..+|||+|||+|.++..|++.-.....|+++|.++.+++.|.++ |+...+...+.+ ++..+ ++||+|+++
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 56899999999999999988511126899999999999988876 432222222222 33344 499999984
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------hHHHHHH----HHhcCCceEEEeecCCCCCCC
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKK----IVGGMRWDTKMVDHEDGPLVP 486 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~----~~~~~~w~~~~~~~~~~~~~~ 486 (506)
.. ......+|.++.|+|||||++++.+..- ....+++ +...-+|+...+... |....
T Consensus 144 ~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~ 216 (248)
T 3tfw_A 144 AD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GTKGW 216 (248)
T ss_dssp SC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-STTCS
T ss_pred Cc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CCCCC
Confidence 42 2345679999999999999999965432 1222333 345667877665222 21123
Q ss_pred eEEEEEEec
Q 010592 487 EKILVAVKQ 495 (506)
Q Consensus 487 ~~~l~~~k~ 495 (506)
..+.+++|+
T Consensus 217 DG~~i~~~~ 225 (248)
T 3tfw_A 217 DGFTLAWVN 225 (248)
T ss_dssp EEEEEEEEC
T ss_pred CeeEEEEEe
Confidence 556666664
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=8.5e-11 Score=107.75 Aligned_cols=121 Identities=12% Similarity=-0.014 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~ 157 (506)
...+.+.+.+.+.+... .++.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+. .+.+...|.
T Consensus 26 p~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~ 103 (187)
T 2fhp_A 26 PTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA-ITKEPEKFEVRKMDA 103 (187)
T ss_dssp CCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCH
T ss_pred cCHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH-HhCCCcceEEEECcH
Confidence 33455666666666311 23459999999999999988765 48999998877655544333 3343 367777776
Q ss_pred ccC----CCCCCCeeEEEEcCcccccCCChHHHHHHH--HHhcCCCeEEEEEcCCC
Q 010592 158 IKM----PYASRAFDMAHCSRCLIPWGANDGRYMIEV--DRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 158 ~~l----p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~--~rvLkPGG~li~~~p~~ 207 (506)
... ++++++||+|+++..++ .......+..+ .++|+|||.+++..+..
T Consensus 104 ~~~~~~~~~~~~~fD~i~~~~~~~--~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 104 NRALEQFYEEKLQFDLVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHHHhcCCCCCEEEECCCCC--chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 542 23367899999987643 23456777777 89999999999987554
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=103.74 Aligned_cols=133 Identities=11% Similarity=0.095 Sum_probs=86.1
Q ss_pred CCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC----------CC-CceeEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST----------YP-RTYDLI 419 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~----------~p-~s~Dlv 419 (506)
...+|||+|||+|.++..|++. +. ..+++++|.++ |+.. . .+ ... +.++.. ++ ++||+|
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~-~~~v~~~D~~~-~~~~--~-~~-~~~---~~d~~~~~~~~~~~~~~~~~~~D~i 92 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGG-KGRIIACDLLP-MDPI--V-GV-DFL---QGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCT-TCEEEEEESSC-CCCC--T-TE-EEE---ESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCC-CCeEEEEECcc-cccc--C-cE-EEE---EcccccchhhhhhhccCCCCceeEE
Confidence 3458999999999999999875 21 25899999997 7654 1 11 111 222222 33 799999
Q ss_pred EEccccccccCcC--C------HHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeecC--CCCCCCeE
Q 010592 420 HAHGLFSLYKDKC--N------IEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDHE--DGPLVPEK 488 (506)
Q Consensus 420 ~~~~~~~~~~~~~--~------~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~ 488 (506)
+++..+++..+.. . ...+|.++.|+|||||.+++.+.. .....+...+.. .|........ ......+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (180)
T 1ej0_A 93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREV 171 (180)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEE
T ss_pred EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceE
Confidence 9988776433210 0 157999999999999999997643 344555555555 3664432221 22334688
Q ss_pred EEEEEe
Q 010592 489 ILVAVK 494 (506)
Q Consensus 489 ~l~~~k 494 (506)
+++|++
T Consensus 172 ~~~~~~ 177 (180)
T 1ej0_A 172 YIVATG 177 (180)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 888876
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=8.8e-11 Score=110.08 Aligned_cols=118 Identities=9% Similarity=-0.006 Sum_probs=82.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc-C
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-M 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~-l 160 (506)
+...+.+.+.+... .++.+|||+|||+|.++..++.+ .|+++|+++.++..+..+ +...+. .+.+.+.|... +
T Consensus 39 ~~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~-~~~~~~~~v~~~~~D~~~~~ 116 (202)
T 2fpo_A 39 DRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKN-LATLKAGNARVVNSNAMSFL 116 (202)
T ss_dssp HHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCSEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHHH
Confidence 44445555544211 13458999999999999987665 489999998777555433 333444 57788888765 5
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHH--hcCCCeEEEEEcCCC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDR--VLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~r--vLkPGG~li~~~p~~ 207 (506)
+...++||+|++...+ + ......+++++.+ +|+|||+++++..+.
T Consensus 117 ~~~~~~fD~V~~~~p~-~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 117 AQKGTPHNIVFVDPPF-R-RGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp SSCCCCEEEEEECCSS-S-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred hhcCCCCCEEEECCCC-C-CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 6667799999998764 3 2445778888865 599999999986543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-11 Score=119.16 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=96.4
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 89 ~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+.+.+.+... .+.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+....+...|.... .+
T Consensus 185 ~~~ll~~l~~~--~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~~~~~d~~~~--~~ 259 (343)
T 2pjd_A 185 SQLLLSTLTPH--TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-AANGVEGEVFASNVFSE--VK 259 (343)
T ss_dssp HHHHHHHSCTT--CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHH-HHTTCCCEEEECSTTTT--CC
T ss_pred HHHHHHhcCcC--CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCEEEEcccccc--cc
Confidence 34455555322 2348999999999999998865 4899999887665544333 34556666666666543 36
Q ss_pred CCeeEEEEcCccccc----CCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhccee
Q 010592 165 RAFDMAHCSRCLIPW----GANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~----~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~ 240 (506)
++||+|+|+.++++- ..+...+++++.++|||||.+++..+.... + ...+...... ++
T Consensus 260 ~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-------------~---~~~l~~~f~~--~~ 321 (343)
T 2pjd_A 260 GRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP-------------Y---PDVLDETFGF--HE 321 (343)
T ss_dssp SCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSS-------------H---HHHHHHHHSC--CE
T ss_pred CCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCC-------------c---HHHHHHhcCc--eE
Confidence 799999999887531 122378999999999999999998654310 0 1123333332 56
Q ss_pred eccccCceEEEEecC
Q 010592 241 KKSEKGEIAVWQKKV 255 (506)
Q Consensus 241 ~~~~~~~~~i~~kp~ 255 (506)
.+.+...+.|++...
T Consensus 322 ~~~~~~gf~v~~~~k 336 (343)
T 2pjd_A 322 VIAQTGRFKVYRAIM 336 (343)
T ss_dssp EEEECSSEEEEEEEC
T ss_pred EEeeCCCEEEEEEEe
Confidence 666777777776543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=118.85 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=75.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CC-CceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p-~s~Dlv~~~~~~ 425 (506)
..+|||+|||+|.++..+++.+. .+|+++|.+ +|+..|.++ |+...+...+.++.. +| ++||+|++..+.
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCEEEEEeccchHHHHHHHHCCC--CEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 46799999999999999998752 489999999 699988765 332212233344333 34 899999997766
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
..+.+...++.+|.++.|+|||||.+++
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 6565667889999999999999999875
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-11 Score=121.22 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=72.5
Q ss_pred CCEEEEECCC------CChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC------CC
Q 010592 103 VRTALDTGCG------VASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA------SR 165 (506)
Q Consensus 103 ~~~VLDiGCG------~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~------~~ 165 (506)
+.+||||||| +|..+..++++ .|+++|+++.+. ....++.+.++|+.++|+. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 4689999999 66656555542 589999999763 1345688999999888877 78
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||+|+|..+ |+..+...+|+++.++|||||+|++...
T Consensus 288 sFDlVisdgs--H~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 288 PFDIVIDDGS--HINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CEEEEEECSC--CCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CccEEEECCc--ccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999753 3345568999999999999999999753
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6e-10 Score=109.45 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~ 157 (506)
...+.+++.+.+.+. .++.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+. .+.+...|.
T Consensus 93 ~~te~l~~~~l~~~~---~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~-~~~~~~v~~~~~d~ 168 (276)
T 2b3t_A 93 PDTECLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ-HLAIKNIHILQSDW 168 (276)
T ss_dssp TTHHHHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH-HHTCCSEEEECCST
T ss_pred chHHHHHHHHHHhcc---cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEEcch
Confidence 445777777777774 23458999999999999999853 58999998876655444333 3344 477777776
Q ss_pred ccCCCCCCCeeEEEEcCccccc------------C------------CChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 158 IKMPYASRAFDMAHCSRCLIPW------------G------------ANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~------------~------------~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ++++++||+|+++..++.. . .....++.++.++|||||++++..+
T Consensus 169 ~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 169 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred hh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 54 2446789999998544321 1 1125788999999999999999854
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-10 Score=106.08 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=78.2
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~ 162 (506)
....+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+...........+.+...|......
T Consensus 65 ~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 65 MVGMMCELLDLK--PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG
T ss_pred HHHHHHHhhCCC--CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 344555666433 4459999999999999888764 488999988766554443333222246667667643222
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..++||+|++..+++++. .++.++|||||.+++..++.
T Consensus 143 ~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECCC
Confidence 367899999999887653 58999999999999987654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.3e-11 Score=112.23 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=73.8
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc---ccCCCCCCCeeEEE
Q 010592 100 NGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKMPYASRAFDMAH 171 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~---~~lp~~~~sfDlV~ 171 (506)
-.++.+|||+|||+|.++..|++. .|.++|+++.++..+. +.+.++ .++.....+. ...++..+++|+|+
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~-~ni~~V~~d~~~p~~~~~~~~~vDvVf 152 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDR-RNIFPILGDARFPEKYRHLVEGVDGLY 152 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTC-TTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhh-cCeeEEEEeccCccccccccceEEEEE
Confidence 345669999999999999999875 3899999987775433 333333 2455555554 34566778999999
Q ss_pred EcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... ...+...++.++.++|||||+++++.
T Consensus 153 ~d~~---~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 153 ADVA---QPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp ECCC---CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eecc---CChhHHHHHHHHHHhccCCCEEEEEE
Confidence 8543 23455789999999999999999974
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=105.50 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=80.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCe-EEEEeecCCCcccHHHHHhcCccceeccccccCC---------------------
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLW-VMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS--------------------- 410 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~-~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~--------------------- 410 (506)
..+|||+|||+|.++..|++.... ...|+++|.++ |.. ..++ ...+.-....+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~-~~~---~~~v-~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI-MDP---IPNV-YFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC-CCC---CTTC-EEEECCTTTTSSCCC-----------CHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc-cCC---CCCc-eEEEccccchhhhhhccccccccccchhhHHH
Confidence 468999999999999999875210 36899999996 321 0111 11110011121
Q ss_pred ---CCC-CceeEEEEccccccccCc-CCH-------HHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCce-EEE
Q 010592 411 ---TYP-RTYDLIHAHGLFSLYKDK-CNI-------EDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWD-TKM 476 (506)
Q Consensus 411 ---~~p-~s~Dlv~~~~~~~~~~~~-~~~-------~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~-~~~ 476 (506)
.++ ++||+|.|+..+++.... .+. ..+|.++.|+|||||.|++.... +....+...+... |. +..
T Consensus 98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~v~~ 176 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQLVHT 176 (201)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEEEEE
T ss_pred HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-HheEEE
Confidence 023 799999998776542111 111 24899999999999999996432 2344555555553 44 333
Q ss_pred eecC-CCCCCCeEEEEEEe
Q 010592 477 VDHE-DGPLVPEKILVAVK 494 (506)
Q Consensus 477 ~~~~-~~~~~~~~~l~~~k 494 (506)
.... ..+...|.+++|++
T Consensus 177 ~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 177 TKPKASRNESREIYLVCKN 195 (201)
T ss_dssp CCCC-----CCEEEEEEEE
T ss_pred ECCcccCCcCceEEEEEec
Confidence 2222 22335688999986
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=115.86 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=85.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
..|.+.+.+.+... ++.+|||||||+|.++..+++. .|+++|+++ ++ ..+.+.....+. .+.+...+...+
T Consensus 36 ~~y~~~i~~~l~~~--~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~-~~a~~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 36 GTYQRAILQNHTDF--KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHHHTGGGT--TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccC--CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HH-HHHHHHHHHcCCCCcEEEEEcchhhC
Confidence 45666676666433 3459999999999999999876 489999986 55 333444444454 477888888887
Q ss_pred CCCCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++ ++||+|++..+++|+... ....+.++.++|||||.+++..
T Consensus 112 ~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 112 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 765 589999999887776543 3678889999999999999653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=113.43 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=70.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccccC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
...+|||+|||+|.++..|++.- ...+|+++|.++.|++.|.+++. +.....-.+.++..+++||+|++..+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 45689999999999999998851 12479999999999999998862 111111112344334899999985432
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
..|.|+.|+|||||++++.+..
T Consensus 159 -----~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 -----CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp -----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred -----hhHHHHHHhcCCCcEEEEEEcC
Confidence 2689999999999999997654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=104.44 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfD 168 (506)
++.+|||+|||+|.++..+++. .++++|+++ ++.. ..+.+...|....+ +++++||
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 3459999999999999988764 488999988 6521 34677777887766 6778999
Q ss_pred EEEEcCcccccCCCh-----------HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 169 MAHCSRCLIPWGAND-----------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 169 lV~~~~~l~~~~~~~-----------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+|+++.++++ .... ..+++++.++|+|||.+++..+.
T Consensus 91 ~i~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 91 VVMSDMAPNM-SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEEECCCccc-cCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999887643 3444 58899999999999999997653
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=112.36 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=78.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc------------CccceeccccccCCC-----CC-C
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER------------GLIGIYHDWCEAFST-----YP-R 414 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r------------g~~~~~~~~~~~~~~-----~p-~ 414 (506)
..+|||+|||+|.++..|+..+. ..+|+++|.++.|++.|.++ |+ ..+...+.++.. ++ +
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCTT
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcccc
Confidence 45799999999999999987531 25899999999999988664 43 122222333221 33 8
Q ss_pred ceeEEEEccccccc-----cCcCCHHHHHHHHhhhccCCcEEEE-EeChhhHHHHHHHHhcCCc
Q 010592 415 TYDLIHAHGLFSLY-----KDKCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGMRW 472 (506)
Q Consensus 415 s~Dlv~~~~~~~~~-----~~~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~~w 472 (506)
++|.|+...-=... ..+.--..+|.++.|+|||||.|++ +|.....+.+.+.+...++
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 89988752100000 0011115799999999999999999 5666666777766666554
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-10 Score=116.73 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=72.2
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CC-CceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YP-RTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p-~s~Dlv~~~~ 423 (506)
.+..+|||+|||+|.++..+++.+. ..|+++|.++ |++.|.++ |+...+...+.++.. ++ ++||+|.+..
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 139 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence 3456899999999999999988752 4899999995 99988765 321222222333332 33 8999999976
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEE
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
+...+.+...+..+|.++.|+|||||.++
T Consensus 140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 43333344567889999999999999998
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.7e-11 Score=113.03 Aligned_cols=115 Identities=15% Similarity=0.031 Sum_probs=81.0
Q ss_pred CceEEeecCcccHHHHHHHhC---CCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC------CC-CceeEEEEc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST------YP-RTYDLIHAH 422 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~---~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~------~p-~s~Dlv~~~ 422 (506)
..+|||+|||+|..+..|++. -.....|+++|.++.|++.|.... ..+...+.+... .+ .+||+|+++
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~--~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDM--ENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGC--TTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccC--CceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 358999999999999998874 011368999999999998876321 222222333332 33 379999985
Q ss_pred cccccccCcCCHHHHHHHHhh-hccCCcEEEEEeChh-----hHHHHHHHHhcC--CceEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDR-ILRPEGAIIIRDEVD-----EIIKVKKIVGGM--RWDTK 475 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~R-vLrPgG~~ii~d~~~-----~~~~~~~~~~~~--~w~~~ 475 (506)
.. | .+...+|.|+.| +|||||++++.|... ....+.++++.. +|++.
T Consensus 160 ~~-----~-~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 160 NA-----H-ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp SS-----C-SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred Cc-----h-HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 54 1 367889999998 999999999987421 224678888877 57753
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=109.48 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=86.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCC-----CceeEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYP-----RTYDLI 419 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p-----~s~Dlv 419 (506)
..+|||+|||+|.++..|++.-....+|+++|.++.|++.|.++ |+...+...+.+ ++.++ ++||+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 45899999999999999988511126899999999999988776 332212222222 22222 799999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------hHHHHHH----HHhcCCceEEEeecCCCC
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKK----IVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~----~~~~~~w~~~~~~~~~~~ 483 (506)
++... ......++.++.|+|||||++++.|..- ....++. +...-+|........+
T Consensus 145 ~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d-- 216 (225)
T 3tr6_A 145 YIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGD-- 216 (225)
T ss_dssp EECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTT--
T ss_pred EECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEcCC--
Confidence 97432 2356789999999999999999976431 1123333 3445568777665443
Q ss_pred CCCeEEEEEEec
Q 010592 484 LVPEKILVAVKQ 495 (506)
Q Consensus 484 ~~~~~~l~~~k~ 495 (506)
.+++++|+
T Consensus 217 ----G~~~~~k~ 224 (225)
T 3tr6_A 217 ----GLTLARKK 224 (225)
T ss_dssp ----CEEEEEEC
T ss_pred ----ccEEEEEC
Confidence 25666653
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.8e-11 Score=114.00 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecC-ccchHHHH--HHHHHHcCC-CeEEEEeccccCCCC-CCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFA-PRDSHEAQ--VQFALERGV-PAVIGVLGTIKMPYA-SRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis-~~di~~~~--~~~a~~~~~-~~~~~~~d~~~lp~~-~~sfDlV~~ 172 (506)
++.+|||||||+|.++..|+++ .|+++|+| +.++..+. .+.+.+.+. ++.+...+...+|.. .+.+|.|++
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 3458999999999999999853 38999999 44443321 112223344 477888888888632 256777776
Q ss_pred cCccc----ccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLI----PWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~----~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++... +...+...+++++.|+|||||+|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 54321 222234678999999999999999943
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=116.60 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
...+|||||||+|.++..++++ .++++|+ +.++..+.... .+.+ ..+.+...|.. .+++. +||+|++..+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRF-LDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhh-hhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 3569999999999999999874 3677888 65554443333 2333 34788888876 45555 8999999999
Q ss_pred ccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 176 LIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++|.++. ..+|+++.++|||||+|++..+
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 98876532 7899999999999999999754
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=115.25 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=81.7
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~ 164 (506)
.+.+.++....+..+|||||||+|.++..++++ .++++|++ .++..+...... .+. .+.+...|....+++.
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~ 231 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARI-QGVASRYHTIAGSAFEVDYGN 231 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHH-HTCGGGEEEEESCTTTSCCCS
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHh-cCCCcceEEEecccccCCCCC
Confidence 444444330123469999999999999999875 47888887 555444433332 233 3778888887777765
Q ss_pred CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+ ||+|++..+++++.+.. ..+++++.++|+|||++++..+.
T Consensus 232 ~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 232 D-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp C-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred C-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 4 99999999998874322 68999999999999999987643
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-10 Score=105.40 Aligned_cols=132 Identities=9% Similarity=0.060 Sum_probs=82.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--------------Ccee
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--------------RTYD 417 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--------------~s~D 417 (506)
+..+|||+|||+|+++..|++.+ ..|+++|.++.. .. .+ +...+.++...+ ++||
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~~---~~V~gvD~~~~~-~~---~~----v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSLA---RKIISIDLQEME-EI---AG----VRFIRCDIFKETIFDDIDRALREEGIEKVD 93 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTC---SEEEEEESSCCC-CC---TT----CEEEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCEEEEEeecCCHHHHHHHHcC---CcEEEEeccccc-cC---CC----eEEEEccccCHHHHHHHHHHhhcccCCcce
Confidence 35689999999999999999873 589999999542 10 12 222234443322 4899
Q ss_pred EEEEccccccccCc--------CCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEE-EeecC-CCCCCC
Q 010592 418 LIHAHGLFSLYKDK--------CNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTK-MVDHE-DGPLVP 486 (506)
Q Consensus 418 lv~~~~~~~~~~~~--------~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~-~~~~~-~~~~~~ 486 (506)
+|.|+........+ ...+.+|.++.|+|||||.|++..-. +....+...++.. |... +.... .-+...
T Consensus 94 ~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~ 172 (191)
T 3dou_A 94 DVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSS 172 (191)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CC
T ss_pred EEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCc
Confidence 99996544322111 11246899999999999999985432 2334555555543 5432 32222 122358
Q ss_pred eEEEEEEec
Q 010592 487 EKILVAVKQ 495 (506)
Q Consensus 487 ~~~l~~~k~ 495 (506)
|.+++|++-
T Consensus 173 E~y~v~~~~ 181 (191)
T 3dou_A 173 EIYIMFFGF 181 (191)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEeee
Confidence 999999874
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-10 Score=114.73 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=83.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~ 163 (506)
+.+.+.++. .++.+|||||||+|.++..++++ .++++|+ +.++..+..+... .+. .+.+...|....+++
T Consensus 180 ~~l~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 180 QLLLEEAKL--DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE-KGVADRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHCCC--TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH-TTCTTTEEEEECCTTTSCCC
T ss_pred HHHHHhcCC--CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHh-cCCCCCEEEEeCccccCCCC
Confidence 345555543 34569999999999999999875 4789999 8777655544433 333 378888888877776
Q ss_pred CCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+. |+|++..++++|.++ ...+|+++.++|||||++++..
T Consensus 256 ~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 256 EA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp CC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 54 999999999887543 3789999999999999998865
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-11 Score=118.28 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=67.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc----c-eeccc--cccCCCCC-CceeEEEEcc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI----G-IYHDW--CEAFSTYP-RTYDLIHAHG 423 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~----~-~~~~~--~~~~~~~p-~s~Dlv~~~~ 423 (506)
+..+|||+|||+|+++..+++. ..|+++|.++ |+..+.++... + .+... +.++..++ ++||+|.|+.
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 3568999999999999999886 3699999996 65433322211 0 12223 34555555 8999999976
Q ss_pred ccccccCcC-CH---HHHHHHHhhhccCCc--EEEEEeC
Q 010592 424 LFSLYKDKC-NI---EDILLEMDRILRPEG--AIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~-~~---~~~l~e~~RvLrPgG--~~ii~d~ 456 (506)
+ .+..++. +. ..+|.++.|+||||| .|++...
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 6 3222211 11 138999999999999 9999654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.9e-10 Score=106.84 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=81.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHH-cCCCeEEEEeccccCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~-~~~~~~~~~~d~~~lp~~ 163 (506)
..+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+....... ....+.+...|....+++
T Consensus 86 ~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLDLA--PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcCCC--CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 3455555433 4459999999999999988865 4889999887665554444333 223577888888888888
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++||+|++. .+++..++.++.++|+|||++++..+.
T Consensus 164 ~~~~D~v~~~------~~~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 164 EAAYDGVALD------LMEPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp TTCEEEEEEE------SSCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred CCCcCEEEEC------CcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 8899999983 234568899999999999999998764
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.7e-11 Score=120.82 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=80.9
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc-----------Cc-cceecccccc
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----------GL-IGIYHDWCEA 408 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r-----------g~-~~~~~~~~~~ 408 (506)
..++..+......+|||||||+|.++..++.. + ...|+++|.++.|+.+|.+. |+ ...+...+.+
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g--~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34444445555678999999999999888753 3 23699999999999988752 33 1344445566
Q ss_pred CCCCC-----CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 409 FSTYP-----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 409 ~~~~p-----~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+...| ..||+|+++..+ ...++...|.|+.|+|||||.||+.+..
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~----F~pdl~~aL~Ei~RvLKPGGrIVssE~f 290 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFA----FGPEVDHQLKERFANMKEGGRIVSSKPF 290 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTT----CCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred ccCCccccccCCccEEEEcccc----cCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence 65544 479999997654 2346788999999999999999997654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=111.41 Aligned_cols=124 Identities=11% Similarity=0.024 Sum_probs=87.0
Q ss_pred eEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C-cEEEecCccchHHHHHHHHHHcC
Q 010592 71 VFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N-VIAMSFAPRDSHEAQVQFALERG 147 (506)
Q Consensus 71 ~~~f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~-v~~vdis~~di~~~~~~~a~~~~ 147 (506)
.|.+......|..........+.+.+ .++.+|||+|||+|.++..+++. . |+++|+++.++..+.. .+...+
T Consensus 98 ~f~~d~~~~~f~~~~~~~~~~l~~~~----~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~-n~~~n~ 172 (278)
T 2frn_A 98 KYKLDVAKIMFSPANVKERVRMAKVA----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNK 172 (278)
T ss_dssp EEEEETTTSCCCGGGHHHHHHHHHHC----CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHTT
T ss_pred EEEEEccceeEcCCcHHHHHHHHHhC----CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHHcC
Confidence 33343333444444333334555555 23559999999999999999875 3 8999999877755443 344445
Q ss_pred CC--eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 148 VP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 148 ~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+. +.+...|...++. +++||+|++... .....++.++.++|||||.+++...
T Consensus 173 ~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 173 VEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp CTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 44 6788888887776 779999999643 2336789999999999999999753
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=118.88 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC--CCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM--PYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l--p~~~~sfDlV~~~ 173 (506)
...+|||||||+|.++..++++ .++++|+ +.++..+.. .+.+.+. .+.+...|.... |++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRK-QTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHH-HHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHH-HHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 3469999999999999999874 3777887 544433322 2222232 477888888764 566 789999999
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++++|.++. ..+|+++.++|||||+|++..
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9998886533 588999999999999999965
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=112.10 Aligned_cols=130 Identities=14% Similarity=0.078 Sum_probs=85.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC-----CCceeEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY-----PRTYDLI 419 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~-----p~s~Dlv 419 (506)
.++|||+|||+|..+..|++.-.....|+++|.++.|++.|.++ |+...+...+.+ ++.+ +++||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 46899999999999999987411135899999999999877654 432222222222 2223 4799999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------hHHHHHH----HHhcCCceEEEeecCCCC
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKK----IVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~----~~~~~~w~~~~~~~~~~~ 483 (506)
+++.. ......+|.++.|+|||||++++.|..- ....+++ +...-++++.+....||
T Consensus 141 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG- 213 (242)
T 3r3h_A 141 FIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADG- 213 (242)
T ss_dssp EEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSSC-
T ss_pred EEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEccCc-
Confidence 98543 2345678999999999999999965431 1122333 34455677766655433
Q ss_pred CCCeEEEEEEe
Q 010592 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
+++++|
T Consensus 214 -----~~~~~k 219 (242)
T 3r3h_A 214 -----MFLVQP 219 (242)
T ss_dssp -----EEEEEE
T ss_pred -----eEEEEE
Confidence 566665
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-10 Score=107.81 Aligned_cols=132 Identities=10% Similarity=0.067 Sum_probs=86.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccc----cCCCC-CCceeEEEEc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCE----AFSTY-PRTYDLIHAH 422 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~----~~~~~-p~s~Dlv~~~ 422 (506)
..+|||+|||+|.++..|++.-.....|+++|.++.|++.|.++ |+. ..+...+. .++.+ +++||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34899999999999999987310125899999999999988764 332 22222222 23345 4899999985
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------hh---HHHHHHHHhc-CCceEEEeecCCCCCCC
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DE---IIKVKKIVGG-MRWDTKMVDHEDGPLVP 486 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~~---~~~~~~~~~~-~~w~~~~~~~~~~~~~~ 486 (506)
.. ......++.++.|+|||||++++.|.. .. +.++.+.+.. -++++.+....|
T Consensus 137 ~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gd----- 205 (221)
T 3dr5_A 137 VS------PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGA----- 205 (221)
T ss_dssp CC------TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTT-----
T ss_pred Cc------HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccc-----
Confidence 43 235567999999999999999994332 11 2333333322 345555655444
Q ss_pred eEEEEEEecc
Q 010592 487 EKILVAVKQY 496 (506)
Q Consensus 487 ~~~l~~~k~~ 496 (506)
.+++++|.+
T Consensus 206 -Gl~~~~~~~ 214 (221)
T 3dr5_A 206 -GLTVVTKAL 214 (221)
T ss_dssp -CEEEEEECC
T ss_pred -hHHHHHHHH
Confidence 378888875
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=7.7e-11 Score=107.45 Aligned_cols=118 Identities=11% Similarity=-0.021 Sum_probs=79.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc-
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK- 159 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~- 159 (506)
+...+.+.+.+.. ...+.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+. .+.+...|...
T Consensus 16 ~~~~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~ 93 (177)
T 2esr_A 16 DKVRGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERA 93 (177)
T ss_dssp --CHHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcHHHh
Confidence 3344455555531 123458999999999999999876 38899998866644433 3333443 36777777655
Q ss_pred CCCCCCCeeEEEEcCcccccCCChHHHHHHHH--HhcCCCeEEEEEcCCC
Q 010592 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVD--RVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~--rvLkPGG~li~~~p~~ 207 (506)
++...++||+|+++..++. ......+..+. ++|+|||++++..+..
T Consensus 94 ~~~~~~~fD~i~~~~~~~~--~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 94 IDCLTGRFDLVFLDPPYAK--ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHBCSCEEEEEECCSSHH--HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHhhcCCCCEEEECCCCCc--chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 3444567999999866521 22356777776 9999999999987544
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-10 Score=115.20 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=80.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp~~ 163 (506)
..+.+.++.. ...+|||||||+|.++..++++ .++++|+ +.++..+..... +.+ ..+.+...|.. .+++
T Consensus 192 ~~l~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~l~~~v~~~~~d~~-~~~p 266 (369)
T 3gwz_A 192 GQVAAAYDFS--GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLT-GRGLADRCEILPGDFF-ETIP 266 (369)
T ss_dssp HHHHHHSCCT--TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTT-TCCC
T ss_pred HHHHHhCCCc--cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhh-hcCcCCceEEeccCCC-CCCC
Confidence 3445555432 3469999999999999999875 3677888 655544443332 233 34788888876 5666
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +||+|++..++++|.+.. ..+|+++.++|||||+|++..
T Consensus 267 ~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp S-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred C-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 6 899999999998875432 379999999999999999964
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.7e-10 Score=115.66 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=90.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCCCceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p~s~Dlv~~~~~~~~ 427 (506)
..+|||+|||+|.++..+++.+. ..+|+++|.++.|++.+.++ ++...+ .+.++ +..+++||+|.++..|++
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~--~~~d~~~~~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVEGEV--FASNVFSEVKGRFDMIISNPPFHD 273 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCCCEE--EECSTTTTCCSCEEEEEECCCCCS
T ss_pred CCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCEE--EEccccccccCCeeEEEECCCccc
Confidence 45799999999999999987531 24799999999999988875 221111 12333 333589999999988874
Q ss_pred cc--CcCCHHHHHHHHhhhccCCcEEEEEeC--hhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 428 YK--DKCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 428 ~~--~~~~~~~~l~e~~RvLrPgG~~ii~d~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.. +......+|.++.|+|||||.++|... .++...++.++... +... .. ...+++.++|
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~~--~~~~--~~----~gf~v~~~~k 336 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFH--EVIA--QT----GRFKVYRAIM 336 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSCC--EEEE--EC----SSEEEEEEEC
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCce--EEEe--eC----CCEEEEEEEe
Confidence 22 123457899999999999999999653 34556666666532 3212 11 2577777766
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.08 E-value=9.9e-10 Score=107.89 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=86.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC-CceeEEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP-RTYDLIHA 421 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p-~s~Dlv~~ 421 (506)
+......+|||+|||+|.++..|++.-....+|+++|.++.+++.|.++ |+...+...+.++.. ++ ++||+|.+
T Consensus 108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~ 187 (277)
T 1o54_A 108 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL 187 (277)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEE
Confidence 3344456899999999999999987511125899999999999998876 331222222333322 44 78999998
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEE
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~ 475 (506)
+..++..+|.++.|+|||||.+++.+.. ....++.+.++..+|...
T Consensus 188 --------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~ 234 (277)
T 1o54_A 188 --------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRI 234 (277)
T ss_dssp --------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEE
T ss_pred --------CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcee
Confidence 3445567999999999999999998874 466677777777888744
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-10 Score=112.59 Aligned_cols=110 Identities=11% Similarity=0.069 Sum_probs=82.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~ 164 (506)
..+.+.++... .+|||||||+|.++..++++ .++++|+ +.++..+........ ...+.+...|... +++
T Consensus 158 ~~~~~~~~~~~---~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 158 HEIPRLLDFRG---RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp HHHHHHSCCTT---CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred HHHHHhCCCCC---CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence 34455554332 69999999999999999865 4889999 888866655443321 2347788888765 555
Q ss_pred CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|++..++++|.+.. ..+++++.++|||||++++...
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6799999999998875432 4899999999999999999753
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.1e-10 Score=106.21 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=78.4
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-----CCCeEEEEeccccC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKM 160 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~-----~~~~~~~~~d~~~l 160 (506)
.+.+.+.....++.+|||||||+|.++..+++. .++++|+++.++..+........ ...+.+...|....
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 344444312234569999999999999988764 48999998876655544333211 12577777887766
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+...++||+|++...+.++ +.++.++|||||+++++.++.
T Consensus 146 ~~~~~~fD~i~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 146 YAEEAPYDAIHVGAAAPVV-------PQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp CGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEEESCT
T ss_pred cccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEecC
Confidence 6557789999998876553 478999999999999987544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=108.70 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=73.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceecccccc----CCCC-CCc-eeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEA----FSTY-PRT-YDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~----~~~~-p~s-~Dlv~~ 421 (506)
..+|||+|||+|.++..++..+. ..|+++|.++.|++.|.++ |+. ..+...+.+ ++.. +++ ||+|.+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 35799999999999998777652 4899999999999998875 221 112222222 2222 378 999999
Q ss_pred ccccccccCcCCHHHHHHHH--hhhccCCcEEEEEeChh
Q 010592 422 HGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEVD 458 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d~~~ 458 (506)
+..|. ......++.++ .|+|||||.+++.....
T Consensus 132 ~~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH----FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 77754 34567889999 78999999999976543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-10 Score=109.44 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---MPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~---lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..|++. .++++|+++.++ +.+.+.+..+ ..+.+...|... +++.+++||+|++.
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i-~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSG-RDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4569999999999999999864 488999988654 3344555554 457777778765 45567899999996
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ..+. ..++.++.++|||||+++++..
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 53 2223 5568899999999999999754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-10 Score=113.11 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=81.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
..|.+.+.+.+... ++.+|||||||+|.++..+++. .++++|+++ ++.. +.+.+...+. .+.+...++..+
T Consensus 24 ~~y~~ai~~~~~~~--~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~-a~~~~~~~~~~~~i~~~~~d~~~~ 99 (328)
T 1g6q_1 24 LSYRNAIIQNKDLF--KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEM-AKELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHH-HHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhHhhc--CCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHH-HHHHHHHcCCCCCEEEEECchhhc
Confidence 44545554443222 3458999999999999999876 489999984 5543 3344444444 377888888888
Q ss_pred CCCCCCeeEEEEcCccccc--CCChHHHHHHHHHhcCCCeEEEE
Q 010592 161 PYASRAFDMAHCSRCLIPW--GANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~--~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
++++++||+|++..+...+ ......++.++.++|||||.++.
T Consensus 100 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 8888899999997543332 33457899999999999999984
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4e-10 Score=115.41 Aligned_cols=100 Identities=24% Similarity=0.327 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|.++..+++. .++++|+ +.++..+..... ..++ .+.+...|... +++. .||+|++..+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHH-hcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 4569999999999999999875 3677887 655544433332 3333 47788888754 4444 4999999999
Q ss_pred ccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 176 LIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++|.+.. ..+++++.++|||||++++...
T Consensus 258 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 258 LLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 98875432 4899999999999999998765
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-10 Score=105.70 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=76.0
Q ss_pred HHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--
Q 010592 90 DQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-- 161 (506)
Q Consensus 90 ~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp-- 161 (506)
..+.+.+. ....++.+|||+|||+|.++..+++. .|+++|+++.++.. .++.+.++ .++.+.+.|+....
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r-~nv~~i~~Da~~~~~~ 140 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR-PNIFPLLADARFPQSY 140 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC-TTEEEEECCTTCGGGT
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCeEEEEcccccchhh
Confidence 34445443 22345669999999999999988864 48999999876533 44555554 46777778875432
Q ss_pred -CCCCCeeEEEEcCcccccCCChH-HHHHHHHHhcCCCeEEEEEcC
Q 010592 162 -YASRAFDMAHCSRCLIPWGANDG-RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 -~~~~sfDlV~~~~~l~~~~~~~~-~~l~e~~rvLkPGG~li~~~p 205 (506)
...++||+|++.... ++.. .++..+.++|||||+|+++..
T Consensus 141 ~~~~~~~D~I~~d~a~----~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 141 KSVVENVDVLYVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp TTTCCCEEEEEECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccccceEEEEecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 124689999997543 3344 445566669999999999854
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=103.64 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=69.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCC---CCCCeeEEEEcCcc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPY---ASRAFDMAHCSRCL 176 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~-~~~~~~~~d~~~lp~---~~~sfDlV~~~~~l 176 (506)
+++.+|||||||. + ++ |+++.+++.|+++. ..+.+.+.|+..+++ ++++||+|+|+.++
T Consensus 11 ~~g~~vL~~~~g~-----------v-~v-----D~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-----------S-PV-----EALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CTTSEEEEEECTT-----------S-CH-----HHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCEEEEecCCc-----------e-ee-----eCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 4567999999996 1 13 55666666666653 247788888888887 78999999999999
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|+.++...+++++.|+|||||+|++..+
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 77536679999999999999999999654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-10 Score=112.53 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=73.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CC-CceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p-~s~Dlv~~~~~~ 425 (506)
..+|||+|||+|.++..+++.+. .+|+++|.+ .|+..|.++ |+...+...+.++.. +| ++||+|++..+.
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 45799999999999999988752 489999999 799987765 332222222333333 34 899999997665
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
..+.+...++.+|.++.|+|||||.+++
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 5555666788999999999999999984
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-10 Score=108.09 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..|++. .|+++|+++.++..+. +.+... .++.+...|... +++. ++||+|++.
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~-~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~ 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAER-ENIIPILGDANKPQEYANIV-EKVDVIYED 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHH-HHhhcC-CCeEEEECCCCCcccccccC-ccEEEEEEe
Confidence 4569999999999999998865 3889999886554333 222222 457777788876 7776 789999932
Q ss_pred CcccccCCCh---HHHHHHHHHhcCCCeEEEEE
Q 010592 174 RCLIPWGAND---GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 174 ~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~ 203 (506)
. .++ ..+++++.++|||||+++++
T Consensus 151 -----~-~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 -----V-AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -----C-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----c-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 233 67799999999999999996
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=106.27 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=81.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCC-----CceeE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYP-----RTYDL 418 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p-----~s~Dl 418 (506)
+..+|||+|||+|.++..|++.-.....|+++|.++.|++.|.++ |+...+...+.+ ++.++ ++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 356899999999999999987411125899999999999998874 332212222222 44444 69999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh--hHHHHHHHHhcCCceEEEee
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--~~~~~~~~~~~~~w~~~~~~ 478 (506)
|+++....++. +...++.++ |+|||||.+++.|... ....++.+...-+++...+.
T Consensus 138 V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (221)
T 3u81_A 138 VFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYS 195 (221)
T ss_dssp EEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEE
T ss_pred EEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcc
Confidence 99976665332 334567777 9999999999976532 22223333445567766543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=114.55 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=77.3
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeE
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDL 418 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dl 418 (506)
+..+...+..+|||+|||+|.++..+++.+. .+|+++|.+ .|+..|.++ |+...+...+.++..+ +++||+
T Consensus 43 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s-~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~ 119 (348)
T 2y1w_A 43 LQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAS-TMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDI 119 (348)
T ss_dssp HHTGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEE
T ss_pred HhccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCH-HHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeE
Confidence 3334334456899999999999999988752 489999999 588877665 4322233333444443 478999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.+..++.++. ...+...+.++.|+|||||.+++.
T Consensus 120 Ivs~~~~~~~~-~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 120 IISEPMGYMLF-NERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEECCCBTTBT-TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEeCchhcCC-hHHHHHHHHHHHhhcCCCeEEEEe
Confidence 99988877554 345678889999999999999863
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-10 Score=112.12 Aligned_cols=106 Identities=14% Similarity=0.016 Sum_probs=76.0
Q ss_pred CCCCceEEeecCcc--cHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--c-cceeccccccCCCC---------CCc
Q 010592 350 SGRYRNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L-IGIYHDWCEAFSTY---------PRT 415 (506)
Q Consensus 350 ~~~~r~vLD~gcG~--G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~-~~~~~~~~~~~~~~---------p~s 415 (506)
..+++.|||+|||+ +++...++..-.....|+++|.|+.||..|+++- . .+..+..+.++... .++
T Consensus 76 ~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~ 155 (277)
T 3giw_A 76 EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDT 155 (277)
T ss_dssp TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccc
Confidence 34589999999998 3333333321011258999999999999988762 1 12344445565442 255
Q ss_pred ee-----EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 416 YD-----LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 416 ~D-----lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|| .|.++.+|+++.+..++..+|.++.++|+|||+|+|++
T Consensus 156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 66 58889999988766668899999999999999999985
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.05 E-value=9.9e-11 Score=106.74 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=72.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCCCceeEEEEcc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYPRTYDLIHAHG 423 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p~s~Dlv~~~~ 423 (506)
...+|||+|||+|.++..+++.+ ..+|+++|.++.|++.|.++ ++...+...+.+ ++..++.||+|+++.
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 34689999999999999998874 25899999999999988775 221122222233 223447899999976
Q ss_pred ccccccCcCCHHHHHHHHh--hhccCCcEEEEEeCh
Q 010592 424 LFSLYKDKCNIEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
.|. ....+.++..+. |+|||||.+++....
T Consensus 109 ~~~----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYA----KETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SSH----HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCC----cchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 653 123456777776 999999999997654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-10 Score=104.47 Aligned_cols=96 Identities=18% Similarity=0.121 Sum_probs=70.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc----ccCCCCCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC----EAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~----~~~~~~p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|++.-....+|+++|.++.|++.|.++ |+...+...+ +.++..++ ||+|+++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~- 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC- 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET-
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC-
Confidence 45899999999999999987521125899999999999988764 3311121111 22344557 99999852
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
...+...++.++.|+|||||.+++.+
T Consensus 135 -----~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 -----DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp -----TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred -----ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 23467889999999999999999965
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=105.18 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=78.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~ 162 (506)
..+...+... ++.+|||+|||+|.++..+++. .++++|+++.++..+..... ..+.+ +.+...|.... +
T Consensus 83 ~~i~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~-~ 158 (255)
T 3mb5_A 83 ALIVAYAGIS--PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK-WAGFDDRVTIKLKDIYEG-I 158 (255)
T ss_dssp HHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH-HHTCTTTEEEECSCGGGC-C
T ss_pred HHHHHhhCCC--CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHH-HcCCCCceEEEECchhhc-c
Confidence 3455555433 4559999999999999998876 37889998866654443333 33433 67777777643 6
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++||+|++.. +++..++.++.++|||||++++..+.
T Consensus 159 ~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 159 EEENVDHVILDL------PQPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp CCCSEEEEEECS------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCcCEEEECC------CCHHHHHHHHHHHcCCCCEEEEEECC
Confidence 778999999842 34577899999999999999998654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-10 Score=109.91 Aligned_cols=106 Identities=9% Similarity=0.111 Sum_probs=74.9
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-CC-CeEEEEeccccCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-GV-PAVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~-~~-~~~~~~~d~~~lp~~ 163 (506)
.+.+.+.. .++.+|||+|||+|.++..+++. .++++|+++..+..+.... ... +. .+.+...|... +++
T Consensus 101 ~~~~~~~~--~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~g~~~v~~~~~d~~~-~~~ 176 (275)
T 1yb2_A 101 YIIMRCGL--RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-SEFYDIGNVRTSRSDIAD-FIS 176 (275)
T ss_dssp -----CCC--CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH-HTTSCCTTEEEECSCTTT-CCC
T ss_pred HHHHHcCC--CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HhcCCCCcEEEEECchhc-cCc
Confidence 34444433 34559999999999999998864 4888999886654443333 222 33 46777777766 667
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++||+|++. .+++..+++++.++|||||++++.++.
T Consensus 177 ~~~fD~Vi~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 177 DQMYDAVIAD------IPDPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp SCCEEEEEEC------CSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred CCCccEEEEc------CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7899999982 235578999999999999999998764
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.4e-10 Score=106.50 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=77.2
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA 163 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~ 163 (506)
....+.+.+... ++.+|||||||+|.++..+++. .++++|+++..+..+..... ..+. ++.+...|. ..+++
T Consensus 79 ~~~~~~~~l~~~--~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~-~~~~~ 154 (235)
T 1jg1_A 79 MVAIMLEIANLK--PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGDG-SKGFP 154 (235)
T ss_dssp HHHHHHHHHTCC--TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCG-GGCCG
T ss_pred HHHHHHHhcCCC--CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEECCc-ccCCC
Confidence 344555555433 3458999999999999998874 68999998866654443333 3333 466666665 44555
Q ss_pred CC-CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 164 SR-AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~-sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++ .||+|++..++.++. .++.++|||||.+++..+..
T Consensus 155 ~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 155 PKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEecC
Confidence 44 499999998876542 47899999999999988654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-10 Score=105.25 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=77.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----------CcEEEecCccchHHHHHHHHHHc-----CCCeEEEE
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGV 154 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vdis~~di~~~~~~~a~~~-----~~~~~~~~ 154 (506)
..+.+.+.....++.+|||||||+|.++..+++. .++++|+++.++..+........ ...+.+..
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 3444544211234569999999999999888762 58999999877655554433321 23567777
Q ss_pred eccccCCCCC-CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 155 LGTIKMPYAS-RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 155 ~d~~~lp~~~-~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.|... ++++ ++||+|++..+++++ +.++.++|||||++++...+
T Consensus 152 ~d~~~-~~~~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 152 GDGRK-GYPPNAPYNAIHVGAAAPDT-------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SCGGG-CCGGGCSEEEEEECSCBSSC-------CHHHHHTEEEEEEEEEEESC
T ss_pred CCccc-CCCcCCCccEEEECCchHHH-------HHHHHHHhcCCCEEEEEEec
Confidence 77765 4544 789999999887654 37899999999999998754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-10 Score=108.35 Aligned_cols=109 Identities=16% Similarity=0.065 Sum_probs=82.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHH-c--CCCeEEEEeccccCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALE-R--GVPAVIGVLGTIKMP 161 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~-~--~~~~~~~~~d~~~lp 161 (506)
..+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+..+.... . ...+.+...|....+
T Consensus 89 ~~i~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGDIF--PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcCCC--CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 4455555433 3459999999999999998864 4889999887665555444433 1 235778888888888
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++++||+|++.. .++..++.++.++|+|||++++..+.
T Consensus 167 ~~~~~~D~v~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEEES------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 8888999999832 34568899999999999999998764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-10 Score=106.40 Aligned_cols=97 Identities=12% Similarity=0.016 Sum_probs=72.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC---CCCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST---YPRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~---~p~s~Dlv~ 420 (506)
+......+|||+|||+|.++..|++.+ .+|+++|.++.+++.|.++ |+. .+...+.++.. .+++||+|+
T Consensus 73 l~~~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~i~ 148 (210)
T 3lbf_A 73 LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPFDAII 148 (210)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEE
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCccEEE
Confidence 344456789999999999999998864 6899999999999998876 321 22222233222 238999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++.++.+..+ ++.++|||||++++.-..
T Consensus 149 ~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 149 VTAAPPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred EccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 9888875542 689999999999997654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-10 Score=108.06 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=72.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCC-C--CCceeEEEEcc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST-Y--PRTYDLIHAHG 423 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~-~--p~s~Dlv~~~~ 423 (506)
+...+..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.. .+.+...+.++.. + +++||+|++..
T Consensus 66 ~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 142 (231)
T 1vbf_A 66 LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWA 142 (231)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECC
Confidence 334445689999999999999998865 589999999999999988731 1112222233322 2 38999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++++.. .++.|+|||||.+++....
T Consensus 143 ~~~~~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 143 TAPTLL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp BBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred cHHHHH---------HHHHHHcCCCcEEEEEEcC
Confidence 887443 4799999999999998654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-11 Score=112.05 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
.+.+++.+.+.+... .++.+|||+|||+|.++..+++. .++++|+++.++..+..+... .+..+.+.+.|...
T Consensus 14 ~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~- 90 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER-FGAVVDWAAADGIE- 90 (215)
T ss_dssp HHHHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-
T ss_pred HHHHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH-hCCceEEEEcchHh-
Confidence 455666677666431 34569999999999999999876 489999998777554433322 23345556666655
Q ss_pred CCCC-----CCeeEEEEcCcccccCC------C-------------------hHHHHHHHHHhcCCCeE-EEEEcC
Q 010592 161 PYAS-----RAFDMAHCSRCLIPWGA------N-------------------DGRYMIEVDRVLRPGGY-WVLSGP 205 (506)
Q Consensus 161 p~~~-----~sfDlV~~~~~l~~~~~------~-------------------~~~~l~e~~rvLkPGG~-li~~~p 205 (506)
++++ ++||+|+++..+++... . ...+++++.++|||||+ +++..+
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 5554 89999999765532111 0 05678899999999999 666544
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.04 E-value=5e-10 Score=104.59 Aligned_cols=96 Identities=11% Similarity=-0.025 Sum_probs=73.0
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|.++..++.. .++++|+++.++..+... +...+.+ +.+...+...++ +.++||+|++...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQV-QHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 458999999999999998864 489999988766444433 3334443 777777877665 4578999998542
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+...++.++.++|+|||++++...
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3457899999999999999999853
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.8e-10 Score=110.04 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=85.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCC-CcccHHHHHhcC---------c-------cce-eccccccCCCC--
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLA-DKNTLGVIYERG---------L-------IGI-YHDWCEAFSTY-- 412 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~-~~~~l~~~~~rg---------~-------~~~-~~~~~~~~~~~-- 412 (506)
..+|||+|||+|.++..++..+. ..|+++|. ++.|++.|.++. + +.. ..+|......+
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 45899999999999999988652 38999999 899999887643 1 111 12244332222
Q ss_pred ---CCceeEEEEccccccccCcCCHHHHHHHHhhhcc---C--CcEEEEE-eCh-----hhHHHHHHHHhcCC-ceEEEe
Q 010592 413 ---PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILR---P--EGAIIIR-DEV-----DEIIKVKKIVGGMR-WDTKMV 477 (506)
Q Consensus 413 ---p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLr---P--gG~~ii~-d~~-----~~~~~~~~~~~~~~-w~~~~~ 477 (506)
+.+||+|.++.++. +..++..+|.++.|+|| | ||.++|. ... .....+.+.+++.+ |++...
T Consensus 158 ~~~~~~fD~Ii~~dvl~---~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLS---FHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp HHSCSSBSEEEEESCCS---CGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEE
T ss_pred hccCCCCCEEEEeCccc---ChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEe
Confidence 47999999978776 34567889999999999 9 9987663 221 12345666778888 887655
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.1e-11 Score=115.94 Aligned_cols=99 Identities=13% Similarity=0.025 Sum_probs=66.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc----c-eeccc--cccCCCCC-CceeEEEEcc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI----G-IYHDW--CEAFSTYP-RTYDLIHAHG 423 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~----~-~~~~~--~~~~~~~p-~s~Dlv~~~~ 423 (506)
+..+|||+|||+|+++..|++. ..|+++|.++ |+..+.++... + .+... +.++..+| ++||+|.|+.
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 3568999999999999999987 3699999996 75444333221 0 12222 34444454 8999999976
Q ss_pred ccccccCcC-CH---HHHHHHHhhhccCCc--EEEEEeC
Q 010592 424 LFSLYKDKC-NI---EDILLEMDRILRPEG--AIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~-~~---~~~l~e~~RvLrPgG--~~ii~d~ 456 (506)
+ ....+.. +. ..+|.++.|+||||| .|++...
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 6 3222111 11 137999999999999 9999653
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.04 E-value=5e-10 Score=116.59 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=79.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHH--HHH----HHHHcC---CCeEE
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEA--QVQ----FALERG---VPAVI 152 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~--~~~----~a~~~~---~~~~~ 152 (506)
...+..+.+.+... ++.+|||||||+|.++..++.. .++++|+++.++..+ +++ .+...+ .++.+
T Consensus 228 p~~v~~ml~~l~l~--~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 228 PNFLSDVYQQCQLK--KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHHHHTTCC--TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 34445566666443 4559999999999999999874 389999998766544 222 222334 24566
Q ss_pred EEeccccC--CC--CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 153 GVLGTIKM--PY--ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 153 ~~~d~~~l--p~--~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..++.... ++ ..++||+|+++.++ +.++...+|.++.++|||||.|++..
T Consensus 306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 306 SLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred EEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 65544322 22 24689999997665 23455788999999999999999974
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-10 Score=113.72 Aligned_cols=111 Identities=15% Similarity=0.221 Sum_probs=80.4
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YA 163 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp-~~ 163 (506)
.+.+.++... .+.+|||||||+|.++..++++ .++++|+ +.++..+... ..+.+. .+.+...|....+ +.
T Consensus 169 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 169 DVVSELGVFA-RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKT-IHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHTCGGGT-TCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHH-HHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHhCCCcC-CCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHH-HHhcCCCCceEEEeCCcccCcccC
Confidence 3444443322 2569999999999999999875 4778888 6566444433 333333 3778888877665 23
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+.||+|++..++++|.++. ..+|+++.++|||||+|++..
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 45699999999998875422 789999999999999999965
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-10 Score=112.30 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|.++..++++ .++++|+ +.++..+..+. ...+. .+.+...|... +++. .||+|++..+
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYL-KDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 3469999999999999999875 3566777 65664444333 33343 47788887754 4444 4999999999
Q ss_pred ccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 176 LIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++|.+.. ..+++++.++|||||++++..+.
T Consensus 259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 259 LLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 98875432 58999999999999999997654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=109.48 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=93.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc---CCC--CCCceeEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA---FST--YPRTYDLI 419 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~---~~~--~p~s~Dlv 419 (506)
...+|||+|||+|.++..+++.. .+.+|+++|.++.+++.|.++- + ...+...+.+ +.. .+++||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 35689999999999999998752 2368999999999999998753 0 0111111222 111 25899999
Q ss_pred EEccccccccCcCCH--HHHHHHHhhhccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeecC---CCCCCCeEE
Q 010592 420 HAHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDHE---DGPLVPEKI 489 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~~ 489 (506)
.++....... ...+ ..++.++.|+|||||.+++.... .....+.+.+++.++........ .-+...+.+
T Consensus 174 i~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f 252 (304)
T 3bwc_A 174 IIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGT 252 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEE
T ss_pred EECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEE
Confidence 9965543211 1111 57999999999999999996443 25567777788888864433222 112245778
Q ss_pred EEEEec
Q 010592 490 LVAVKQ 495 (506)
Q Consensus 490 l~~~k~ 495 (506)
++|.|.
T Consensus 253 ~~as~~ 258 (304)
T 3bwc_A 253 LVCSKK 258 (304)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 888885
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.9e-10 Score=105.87 Aligned_cols=98 Identities=12% Similarity=0.021 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC---------CcEEEecCccchHHHHHHHHHHc-----CCCeEEEEeccccCC----CC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---------NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKMP----YA 163 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---------~v~~vdis~~di~~~~~~~a~~~-----~~~~~~~~~d~~~lp----~~ 163 (506)
++.+|||||||+|.++..+++. .++++|+++..+..+........ ...+.+...|....+ ..
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 4569999999999999988763 48899998876655544443322 235778888877655 55
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.++||+|++...++++ +.++.++|||||++++..++
T Consensus 160 ~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 160 LGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEcc
Confidence 6789999998877543 48889999999999998754
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=103.50 Aligned_cols=98 Identities=15% Similarity=0.015 Sum_probs=70.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCC----CceeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYP----RTYDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p----~s~Dlv~ 420 (506)
..+|||+|||+|.++..|++.-.....|+++|.++.+++.|.++ |+...+...+.++ +.++ .+||+|+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 46899999999999999988621125899999999999988765 4322122222222 1121 5799999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+.... .....+|.++.|+|||||++++.+.
T Consensus 139 ~d~~~------~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 139 IDADK------QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp ECSCG------GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EcCCc------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 85442 2456899999999999999998654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-10 Score=109.22 Aligned_cols=118 Identities=16% Similarity=0.073 Sum_probs=78.3
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc--CC--C------
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER--GV--P------ 149 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~--~~--~------ 149 (506)
..+++.+.+.+. ...+.+|||+|||+|.++..++.. .++++|+++.++..+........ ++ .
T Consensus 37 ~~l~~~~l~~~~--~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~ 114 (250)
T 1o9g_A 37 TEIFQRALARLP--GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERRE 114 (250)
T ss_dssp HHHHHHHHHTSS--CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhh
Confidence 355555555553 223458999999999999988764 48899998877655543322110 11 0
Q ss_pred -------------------eE-------------EEEeccccCCC-----CCCCeeEEEEcCcccccCCC--------hH
Q 010592 150 -------------------AV-------------IGVLGTIKMPY-----ASRAFDMAHCSRCLIPWGAN--------DG 184 (506)
Q Consensus 150 -------------------~~-------------~~~~d~~~lp~-----~~~sfDlV~~~~~l~~~~~~--------~~ 184 (506)
+. +...|...... ..++||+|+|+..+++.... ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~ 194 (250)
T 1o9g_A 115 QSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVA 194 (250)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred hhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHH
Confidence 22 66777654321 34589999998766543321 14
Q ss_pred HHHHHHHHhcCCCeEEEEEcC
Q 010592 185 RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 185 ~~l~e~~rvLkPGG~li~~~p 205 (506)
.+++++.++|||||+++++..
T Consensus 195 ~~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 195 GLLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHhcCCCcEEEEeCc
Confidence 899999999999999999543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=111.98 Aligned_cols=146 Identities=12% Similarity=0.063 Sum_probs=102.3
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccceeccccccCCCCC-CceeEE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCEAFSTYP-RTYDLI 419 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~~~~~~~~~~~~~p-~s~Dlv 419 (506)
++........++|+|||||+|.++..|+++. ..+.++..|. +.+++.|.++- ....+.....+|-..| ..+|++
T Consensus 171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~ 248 (353)
T 4a6d_A 171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLY 248 (353)
T ss_dssp HHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEE
T ss_pred HHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCCceEE
Confidence 3444556677899999999999999998753 2356777887 48999887752 1222333334543333 568999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh--------------------------hHHHHHHHHhcCCce
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--------------------------EIIKVKKIVGGMRWD 473 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--------------------------~~~~~~~~~~~~~w~ 473 (506)
.+.++|+.+.+ .+...+|+++.++|+|||.++|.|..- ..+++++++++.+|+
T Consensus 249 ~~~~vlh~~~d-~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~ 327 (353)
T 4a6d_A 249 ILARVLHDWAD-GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFR 327 (353)
T ss_dssp EEESSGGGSCH-HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCE
T ss_pred EeeeecccCCH-HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 99999984431 133578999999999999999976420 246788999999999
Q ss_pred EEEeecCCCCCCCeEEEEEEec
Q 010592 474 TKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
...+....+ ..-+++|+|-
T Consensus 328 ~v~v~~~~~---~~~~i~ArKg 346 (353)
T 4a6d_A 328 DFQFKKTGA---IYDAILARKG 346 (353)
T ss_dssp EEEEECCSS---SCEEEEEECC
T ss_pred eEEEEEcCC---ceEEEEEEec
Confidence 665443322 4568889984
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-10 Score=102.76 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=76.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeE--------EEEeecCCCcccHHHHHhcCccceeccc-cccCCC----------CC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWV--------MNVVPTLADKNTLGVIYERGLIGIYHDW-CEAFST----------YP 413 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~--------~~v~~~d~~~~~l~~~~~rg~~~~~~~~-~~~~~~----------~p 413 (506)
..+|||+|||+|.++..|++.-... ..|+++|.++.+ . + ..+... +.++.. ++
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-~------~-~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-P------L-EGATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-C------C-TTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-c------C-CCCeEEEeccCCCHHHHHHHHHhcC
Confidence 4689999999999999998752111 479999999632 1 1 111111 222221 23
Q ss_pred -CceeEEEEccccccccCcC-CH-------HHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCce-EEEeecC-C
Q 010592 414 -RTYDLIHAHGLFSLYKDKC-NI-------EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWD-TKMVDHE-D 481 (506)
Q Consensus 414 -~s~Dlv~~~~~~~~~~~~~-~~-------~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~-~~~~~~~-~ 481 (506)
++||+|.|+..++...++. +. ..+|.++.|+|||||.|++.+... ....+...+... |. +...... .
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~~~ 173 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRIIKPEAS 173 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEECCC--
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEECCccc
Confidence 6899999976655333221 11 478999999999999999986432 234444444442 33 2222211 1
Q ss_pred CCCCCeEEEEEEe
Q 010592 482 GPLVPEKILVAVK 494 (506)
Q Consensus 482 ~~~~~~~~l~~~k 494 (506)
.....|.+++++.
T Consensus 174 ~~~~~e~~~v~~g 186 (196)
T 2nyu_A 174 RKESSEVYFLATQ 186 (196)
T ss_dssp ------EEEEEEE
T ss_pred CccCceEEEEeee
Confidence 1123566666654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-10 Score=108.10 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=74.9
Q ss_pred CCceEEeecCcccHHHHHHHhCC-CeEEEEeecCCCcccHHHHHhc-------Cccce----------------------
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER-------GLIGI---------------------- 401 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~-~~~~~v~~~d~~~~~l~~~~~r-------g~~~~---------------------- 401 (506)
...+|||+|||+|.++..|+..- ....+|+++|.++.|++.|.++ ++...
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 45689999999999999988740 1246899999999999998854 11000
Q ss_pred ---ec-------------cccccCCC-C------C-CceeEEEEccccccccCc------CCHHHHHHHHhhhccCCcEE
Q 010592 402 ---YH-------------DWCEAFST-Y------P-RTYDLIHAHGLFSLYKDK------CNIEDILLEMDRILRPEGAI 451 (506)
Q Consensus 402 ---~~-------------~~~~~~~~-~------p-~s~Dlv~~~~~~~~~~~~------~~~~~~l~e~~RvLrPgG~~ 451 (506)
+. ..+.++.. . + .+||+|.|+..+....+. .....++.++.|+|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 11 22233322 2 3 489999998766643322 23458999999999999999
Q ss_pred EEEeCh
Q 010592 452 IIRDEV 457 (506)
Q Consensus 452 ii~d~~ 457 (506)
+|.+..
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 997654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.8e-10 Score=105.25 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC---eEEE
Q 010592 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP---AVIG 153 (506)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~---~~~~ 153 (506)
......++..+....+. .++.+|||||||+|..+..|++. .++++|+++.++..+...+ ...+.. +.+.
T Consensus 38 ~~~~~~~l~~l~~~~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~~i~~~ 114 (221)
T 3dr5_A 38 DEMTGQLLTTLAATTNG--NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF-REAGYSPSRVRFL 114 (221)
T ss_dssp CHHHHHHHHHHHHHSCC--TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHH-HHTTCCGGGEEEE
T ss_pred CHHHHHHHHHHHHhhCC--CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcCcEEEE
Confidence 35556676777666532 22348999999999999998863 4899999987665544433 334443 6777
Q ss_pred EeccccC-C-CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 154 VLGTIKM-P-YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 154 ~~d~~~l-p-~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+|+... + +++++||+|++... ..+...+++++.++|||||++++..
T Consensus 115 ~gda~~~l~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 115 LSRPLDVMSRLANDSYQLVFGQVS----PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CSCHHHHGGGSCTTCEEEEEECCC----TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred EcCHHHHHHHhcCCCcCeEEEcCc----HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 7776443 2 34689999998643 2334679999999999999999853
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-09 Score=102.51 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEE-eccc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGV-LGTI 158 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~-~d~~ 158 (506)
++...+ +.+.+.+.. ...+.+|||||||+|.++..|++. .|+++|+++.++..+ .++........ .+..
T Consensus 20 rg~~kL-~~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a-----~~~~~~~~~~~~~~~~ 92 (232)
T 3opn_A 20 RGGLKL-EKALKEFHL-EINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWK-----IRSDERVVVMEQFNFR 92 (232)
T ss_dssp TTHHHH-HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHH-----HHTCTTEEEECSCCGG
T ss_pred CcHHHH-HHHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHH-----HHhCccccccccceEE
Confidence 444444 344444432 234569999999999999999887 389999999888543 33322222211 1111
Q ss_pred cCC---CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhc-----ccCChHHhHHHHHHH
Q 010592 159 KMP---YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKA-----WQRPKEELQEEQRKI 230 (506)
Q Consensus 159 ~lp---~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~l 230 (506)
.+. ++...||.+.+..++.++ ..++.++.|+|||||+|++...+. +...... ..+.........+.+
T Consensus 93 ~~~~~~~~~~~~d~~~~D~v~~~l----~~~l~~i~rvLkpgG~lv~~~~p~-~e~~~~~~~~~G~~~d~~~~~~~~~~l 167 (232)
T 3opn_A 93 NAVLADFEQGRPSFTSIDVSFISL----DLILPPLYEILEKNGEVAALIKPQ-FEAGREQVGKNGIIRDPKVHQMTIEKV 167 (232)
T ss_dssp GCCGGGCCSCCCSEEEECCSSSCG----GGTHHHHHHHSCTTCEEEEEECHH-HHSCHHHHC-CCCCCCHHHHHHHHHHH
T ss_pred EeCHhHcCcCCCCEEEEEEEhhhH----HHHHHHHHHhccCCCEEEEEECcc-cccCHHHhCcCCeecCcchhHHHHHHH
Confidence 111 111124555544444332 678999999999999999975221 1111111 111233333345566
Q ss_pred HHHHHhcceee
Q 010592 231 EEIANLLCWEK 241 (506)
Q Consensus 231 ~~l~~~~~w~~ 241 (506)
.++.+..+|+.
T Consensus 168 ~~~l~~aGf~v 178 (232)
T 3opn_A 168 LKTATQLGFSV 178 (232)
T ss_dssp HHHHHHHTEEE
T ss_pred HHHHHHCCCEE
Confidence 66666666654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-10 Score=104.17 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=69.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCC----C---CCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFST----Y---PRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~----~---p~s~Dlv~~~~ 423 (506)
..+|||+|||+|.++..+++.+. +|+++|.++.|++.|.++-- .+ .+...+.++.. . +.+||+|+++.
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 45799999999999999998763 49999999999998887521 00 12222233222 1 13899999987
Q ss_pred ccccccCcCCHHHHHHHHh--hhccCCcEEEEEeCh
Q 010592 424 LFSLYKDKCNIEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
.|. ...+.++.++. |+|||||.+++....
T Consensus 119 ~~~-----~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA-----MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CTT-----SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCc-----hhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 765 23345666666 999999999997654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-11 Score=117.53 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=73.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..|++.+ ..|+++|.++.|++.|.++ |+...+...+.++..+ +++||+|+++..++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 4679999999999999999976 6899999999999988765 3212223333333322 38999999998888
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.. .....+.++.|+|||||.+++..
T Consensus 156 ~~~---~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 156 GPD---YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SGG---GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred Ccc---hhhhHHHHHHhhcCCcceeHHHH
Confidence 543 33337789999999999987753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=104.08 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=82.9
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C-C-CceeEEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y-P-RTYDLIHA 421 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~-p-~s~Dlv~~ 421 (506)
......+|||+|||+|.++..+++. ..+|+++|.++.+++.|.++ |+...+.....++.. . + ++||+|++
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 164 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV 164 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEE
Confidence 3344568999999999999999886 35899999999999998876 321222222333332 2 3 78999998
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCce
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~ 473 (506)
+..++..+|.++.++|||||.+++.... ....++...++.. |.
T Consensus 165 --------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 165 --------DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp --------CSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred --------CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 3445667999999999999999998874 4566666666665 65
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=105.80 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-------C-CCeEEEEecccc-CC--CCCCC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-------G-VPAVIGVLGTIK-MP--YASRA 166 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~-------~-~~~~~~~~d~~~-lp--~~~~s 166 (506)
++.+|||||||+|.++..++.. .++++|+++.++..+..+....+ + .++.+...|+.. ++ ++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 3458999999999999999875 48999999877655544433320 3 357778888765 56 77889
Q ss_pred eeEEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 167 FDMAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|.|+....- +|... ...++.++.++|+|||+|++.+.
T Consensus 129 ~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 129 LSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 9999864321 21100 04799999999999999999754
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=111.55 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=92.7
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC-CCCCCceeEEEEccccccc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-STYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~-~~~p~s~Dlv~~~~~~~~~ 428 (506)
..+..+|||||||+|.++..|++.. ....++.+|. +.|++.|.++.-+.. .+.++ ..+|.. |+|++.++++++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~---~~~d~~~~~p~~-D~v~~~~vlh~~ 274 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAFSGVEH---LGGDMFDGVPKG-DAIFIKWICHDW 274 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCCTTEEE---EECCTTTCCCCC-SEEEEESCGGGB
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhcCCCEE---EecCCCCCCCCC-CEEEEechhhcC
Confidence 4557899999999999999998742 1257899999 688887765432222 12332 234544 999999999854
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------------hHHHHHHHHhcCCceEEEee
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------~~~~~~~~~~~~~w~~~~~~ 478 (506)
.+ .+...+|.++.|+|||||+|+|.|..- ..+++++++++.+|+...+.
T Consensus 275 ~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 353 (368)
T 3reo_A 275 SD-EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVA 353 (368)
T ss_dssp CH-HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEE
Confidence 42 134579999999999999999965320 14567888999999866443
Q ss_pred cCCCCCCCeEEEEEEec
Q 010592 479 HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 479 ~~~~~~~~~~~l~~~k~ 495 (506)
...+ ...++.+.|+
T Consensus 354 ~~~~---~~~vie~~k~ 367 (368)
T 3reo_A 354 SCAF---NTYVMEFLKT 367 (368)
T ss_dssp EEET---TEEEEEEECC
T ss_pred EeCC---CcEEEEEEeC
Confidence 3322 2335555553
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-10 Score=105.43 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=88.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC------------
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY------------ 412 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~------------ 412 (506)
..+|||+|||+|.++..|++......+|+++|.++.+++.|.++ |+...+...+.+ ++.+
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 45899999999999999987521125899999999999988876 331111111121 1111
Q ss_pred ---C-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------hhHHH----HHHHHhcCCc
Q 010592 413 ---P-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIK----VKKIVGGMRW 472 (506)
Q Consensus 413 ---p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~~~~~----~~~~~~~~~w 472 (506)
+ ++||+|+++... .....+|.++.++|||||.+++.+.. ..... .+.+...-++
T Consensus 141 f~~~~~~fD~I~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDADK------ENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLV 214 (239)
T ss_dssp TCCSTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTE
T ss_pred ccCCCCCcCEEEEeCCH------HHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCe
Confidence 2 789999985432 24568999999999999999997621 11222 3334566778
Q ss_pred eEEEeecCCCCCCCeEEEEEEecc
Q 010592 473 DTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
.+......+| +.+++|++
T Consensus 215 ~~~~~p~~~g------~~~~~~~~ 232 (239)
T 2hnk_A 215 DVSLVPIADG------VSLVRKRL 232 (239)
T ss_dssp EEEEECSTTC------EEEEEECC
T ss_pred EEEEEEcCCc------eEeeeehh
Confidence 8777665543 67777765
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-11 Score=115.90 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
++.+|||+|||+|.++..+++.+ ++++|+++.++..+.. .+...++ .+.+.+.|...++ ++++||+|+++..++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARN-NAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 34589999999999999999874 8899999877654443 3344454 5788888887766 567999999998876
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+. .+....+.++.++|+|||.+++.
T Consensus 156 ~~-~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GP-DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SG-GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred Cc-chhhhHHHHHHhhcCCcceeHHH
Confidence 63 44455778899999999997765
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-10 Score=103.50 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=72.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C---CCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y---PRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~---p~s~Dlv~ 420 (506)
...+|||+|||+|.++..+++.+. .+|+++|.++.|++.|.++ ++...+...+.++.. + +.+||+|.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 356899999999999998887652 5899999999999988765 221112222222211 1 57999999
Q ss_pred EccccccccCcCCHHHHHHHH--hhhccCCcEEEEEeCh
Q 010592 421 AHGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEV 457 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d~~ 457 (506)
++..|. ......++.++ .|+|||||.+++....
T Consensus 122 ~~~~~~----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYA----KQEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp ECCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ECCCCC----chhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 977754 23556777777 9999999999997544
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5e-10 Score=110.05 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=71.5
Q ss_pred CceEEeecCcccH----HHHHHHhC-CCe--EEEEeecCCCcccHHHHHhcCc------------------------cc-
Q 010592 353 YRNIMDMNAGFGG----FAAAIQSS-KLW--VMNVVPTLADKNTLGVIYERGL------------------------IG- 400 (506)
Q Consensus 353 ~r~vLD~gcG~G~----~~~~l~~~-~~~--~~~v~~~d~~~~~l~~~~~rg~------------------------~~- 400 (506)
..+|||+|||||. +|..|++. +.. ...|+++|+|++||+.|.+.-. .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3579999999998 55556542 210 1489999999999999987420 00
Q ss_pred ---------eeccccccCCC--CC--CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 401 ---------IYHDWCEAFST--YP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 401 ---------~~~~~~~~~~~--~p--~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+...+.++.. ++ +.||+|.|.+++.+.. ......++.+++++|||||+|++...
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 01111222222 33 7899999999887554 23347899999999999999999544
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-10 Score=116.07 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=64.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCC----CcccHHHHHhcCc-cceeccccc-cCCCCC-CceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLA----DKNTLGVIYERGL-IGIYHDWCE-AFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~----~~~~l~~~~~rg~-~~~~~~~~~-~~~~~p-~s~Dlv~~~~~~ 425 (506)
..+|||+|||+|+++..|++.+ .|+++|. ++.++..+..+.. ...+...+. ++..+| .+||+|+|+.++
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~~~ 158 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGE 158 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECCcc
Confidence 4689999999999999999873 5778887 4444432211111 112222234 444444 899999998777
Q ss_pred ccccCcC-C---HHHHHHHHhhhccCCcEEEEEeC
Q 010592 426 SLYKDKC-N---IEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~-~---~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+ ..+.. + ...+|.++.|+|||||.|++...
T Consensus 159 ~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 159 S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred c-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 5 22211 1 11589999999999999999643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.99 E-value=9e-10 Score=107.42 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=77.0
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH---cCCC--eEEEEeccccC--
Q 010592 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE---RGVP--AVIGVLGTIKM-- 160 (506)
Q Consensus 92 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~---~~~~--~~~~~~d~~~l-- 160 (506)
+..++... ++.+|||+|||+|.++..|+++ .++++|+++.++..+..+. .. .+.. +.+...|...+
T Consensus 28 L~~~~~~~--~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~-~~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVADD--RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSL-ELPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCCC--SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHT-TSGGGTTTGGGEEEEECCTTCCHH
T ss_pred HHHHhccc--CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HhhhhCCCcceEEEEeCCHHHHhh
Confidence 44555433 3458999999999999999876 4788888775554333222 22 2332 67778887765
Q ss_pred -----CCCCCCeeEEEEcCccccc-----------------CCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 161 -----PYASRAFDMAHCSRCLIPW-----------------GANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 161 -----p~~~~sfDlV~~~~~l~~~-----------------~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++++||+|+++..+... ......+++++.++|||||+|++..+.
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 3667899999998544221 112468899999999999999998653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=100.37 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC---------------
Q 010592 103 VRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------------- 161 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--------------- 161 (506)
+.+|||+|||+|.++..++++ .++++|+++.. ....+.+.+.|....+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccc
Confidence 458999999999999999864 38999998831 1124667777877665
Q ss_pred ----------CCCCCeeEEEEcCcccccC---CCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010592 162 ----------YASRAFDMAHCSRCLIPWG---AND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ----------~~~~sfDlV~~~~~l~~~~---~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++++||+|+|..++++.. .+. ..+++++.++|||||.|++..
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 5677999999987653311 111 137899999999999999865
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.5e-10 Score=103.31 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=71.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..++.++. ..|+++|.++.|++.|.++ ++ ..+...+.+ ++..+++||+|.++..
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 35799999999999998777653 3899999999999998765 22 122222233 3333479999999766
Q ss_pred cccccCcCCHHHHHHHHhh--hccCCcEEEEEeCh
Q 010592 425 FSLYKDKCNIEDILLEMDR--ILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~R--vLrPgG~~ii~d~~ 457 (506)
|. ......++.++.+ +|||||.+++....
T Consensus 132 ~~----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 132 FR----RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SS----TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CC----CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 54 3456778888855 69999999997654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=106.28 Aligned_cols=117 Identities=11% Similarity=0.119 Sum_probs=80.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----C-ccceeccccccCCC--C-CCceeEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----G-LIGIYHDWCEAFST--Y-PRTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g-~~~~~~~~~~~~~~--~-p~s~Dlv 419 (506)
......+|||+|||+|.++..|++.-....+|+++|.++.+++.|.++ | +...+...+.++.. + +++||+|
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v 175 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA 175 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEE
Confidence 334456899999999999999987400125899999999999988876 3 11222222233322 2 4789999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhc-CCce
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGG-MRWD 473 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~-~~w~ 473 (506)
++ +..++..+|.++.|+|||||++++.... +.+.++...+.. .+|.
T Consensus 176 ~~--------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 176 VL--------DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp EE--------ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred EE--------CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 98 3335567999999999999999997754 344444444444 5554
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-10 Score=105.89 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=72.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCC--CCceeEEEEc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STY--PRTYDLIHAH 422 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~--p~s~Dlv~~~ 422 (506)
..+|||+|||+|.++..|++... ..+|+++|.++.+++.|.++ |+...+...+.++ +.. +++||+|+++
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 45899999999999999987521 25899999999999998876 4311122222332 222 4789999995
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
..++ +...+|.++.++|||||.+++.+.
T Consensus 134 ~~~~------~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 134 AAKG------QYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GGGS------CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCHH------HHHHHHHHHHHHcCCCeEEEEEcC
Confidence 5543 667899999999999999999753
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-10 Score=115.47 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=72.9
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHH-HHH--HcCCCeEEEEeccccCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQ-FAL--ERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~-~a~--~~~~~~~~~~~d~~~lp~~ 163 (506)
.+.+.++.. .+.+|||||||+|.++..++++ + ++++|+++ ...+ ... .....+.+...|.. .+++
T Consensus 175 ~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-----~~~~~~~~~~~~~~~v~~~~~d~~-~~~p 246 (348)
T 3lst_A 175 ILARAGDFP--ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-----VVARHRLDAPDVAGRWKVVEGDFL-REVP 246 (348)
T ss_dssp HHHHHSCCC--SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-----HHTTCCCCCGGGTTSEEEEECCTT-TCCC
T ss_pred HHHHhCCcc--CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-----HhhcccccccCCCCCeEEEecCCC-CCCC
Confidence 445555433 3569999999999999999875 3 45555521 1110 000 11224778888875 4555
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|++..++++|.+.. ..+|+++.++|||||+|++..
T Consensus 247 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 247 --HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred --CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 899999999998875433 699999999999999999965
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-09 Score=108.61 Aligned_cols=117 Identities=15% Similarity=-0.007 Sum_probs=85.0
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh-----CCcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS-----RNVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM 160 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----~~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l 160 (506)
.+...+..+.... ++.+|||+|||+|.++..++. ..++++|+++.++..+.. .+...++ .+.+.+.|+..+
T Consensus 190 ~la~~l~~~~~~~--~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~-n~~~~g~~~i~~~~~D~~~~ 266 (354)
T 3tma_A 190 VLAQALLRLADAR--PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE-AALASGLSWIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHHTTCC--TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHH-HHHHTTCTTCEEEECCGGGG
T ss_pred HHHHHHHHHhCCC--CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHH-HHHHcCCCceEEEeCChhhC
Confidence 3444555655433 345899999999999888876 358999999977755544 3444454 578889999988
Q ss_pred CCCCCCeeEEEEcCcccccCCC-------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 161 PYASRAFDMAHCSRCLIPWGAN-------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~-------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+.+.++||+|+++..+.....+ ...+++++.++|||||.+++.++.
T Consensus 267 ~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 267 PRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp GGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred ccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 8777789999997654221111 157899999999999999998763
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.4e-10 Score=111.66 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=73.4
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC---CCCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST---YPRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~---~p~s~Dlv~ 420 (506)
+...+..+|||+|||+|.++..|++.+....+|+++|.++++++.|.++ |+.. +...+.++.. .+++||+|+
T Consensus 71 l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~~~fD~Iv 149 (317)
T 1dl5_A 71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFSPYDVIF 149 (317)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCCEEEEE
T ss_pred cCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccCCCeEEEE
Confidence 3444556899999999999999987532124699999999999998876 3321 2222334332 238899999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+..++++.. .++.++|||||.++|....
T Consensus 150 ~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 150 VTVGVDEVP---------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ECSBBSCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred EcCCHHHHH---------HHHHHhcCCCcEEEEEECC
Confidence 988887543 5789999999999997543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-09 Score=98.76 Aligned_cols=116 Identities=11% Similarity=-0.038 Sum_probs=80.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
...+|||+|||+|.++..|+..+ ...|+++|.++.|++.|.++-. .+...+.++..+|++||+|.++..|.+..+.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~--~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG--GVNFMVADVSEISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT--TSEEEECCGGGCCCCEEEEEECCCC------
T ss_pred CCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcC--CCEEEECcHHHCCCCeeEEEECCCchhccCc
Confidence 35689999999999999998874 2479999999999999988742 1222234454567899999999888866532
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
. ...++.++.|+| |+.+++. .......+.+++...+ ++..
T Consensus 127 ~-~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g-~~~~ 166 (200)
T 1ne2_A 127 S-DRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG-DVFR 166 (200)
T ss_dssp --CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE-EEEE
T ss_pred h-hHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC-CEEE
Confidence 2 256899999999 5544444 4455677777777766 5543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=110.95 Aligned_cols=100 Identities=12% Similarity=0.002 Sum_probs=68.5
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--------------cceeccccccCCC----
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--------------IGIYHDWCEAFST---- 411 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--------------~~~~~~~~~~~~~---- 411 (506)
.....+|||+|||+|.++..|+........|+++|.++.+++.|.++.. ...+...+.++..
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~ 182 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 182 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence 3445689999999999999998741112579999999999999887521 1122222333332
Q ss_pred CC-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 412 YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 412 ~p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++ ++||+|+++. .....+|.++.|+|||||.|++....
T Consensus 183 ~~~~~fD~V~~~~--------~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 183 IKSLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp -----EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred cCCCCeeEEEECC--------CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 33 6899999832 22334899999999999999997654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-09 Score=99.98 Aligned_cols=113 Identities=13% Similarity=0.178 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEe
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~ 155 (506)
.....++..+.... ++.+|||||||+|.++..|++. .++++|+++.++..+.... ...+.. +.+.+.
T Consensus 50 ~~~~~~l~~l~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~ 123 (225)
T 3tr6_A 50 PEQAQLLALLVKLM-----QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYW-EKAGLSDKIGLRLS 123 (225)
T ss_dssp HHHHHHHHHHHHHH-----TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEES
T ss_pred HHHHHHHHHHHHhh-----CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeC
Confidence 33344555554443 2348999999999999999875 3899999887665544333 333433 777777
Q ss_pred cccc-CC-CC----CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 156 GTIK-MP-YA----SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 156 d~~~-lp-~~----~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+... ++ +. .++||+|++... ..+...+++++.++|||||+|++...
T Consensus 124 d~~~~~~~~~~~~~~~~fD~v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 124 PAKDTLAELIHAGQAWQYDLIYIDAD----KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp CHHHHHHHHHTTTCTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CHHHHHHHhhhccCCCCccEEEECCC----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 7633 22 11 178999997543 23357899999999999999998643
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=111.41 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=71.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
...+|||||||+|.++..|+++ + ++++|+ + .+++.+.+. ..+.+...|... |++.+ |+|++..++|
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P-----HVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICH 272 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H-----HHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhh
Confidence 3569999999999999999875 3 555665 3 334444332 457888888765 77654 9999999998
Q ss_pred ccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 178 PWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 178 ~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|.++. ..+|+++.++|||||+|++..
T Consensus 273 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 273 DWSDEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp GBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 886543 588999999999999999965
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-09 Score=103.61 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=72.5
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc-CCCC--CCCeeEEEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK-MPYA--SRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~-lp~~--~~sfDlV~~ 172 (506)
+.+|||||||+|..+..|++. .++++|+++.++..+.... ...+. .+.+...|+.. ++.. .++||+|++
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENL-QLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 458999999999999999875 4899999887665544333 33344 37788888754 3332 348999998
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
... ..+...+++++.++|||||+|++...
T Consensus 143 d~~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 143 DAD----KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CSC----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CCc----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 653 23346899999999999999998653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.9e-10 Score=111.79 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=85.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC-CCCCCceeEEEEccccccccC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-STYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~-~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
+..+|||+|||+|.++..|++.. ...+++++|. +.|++.|.+..- +...+.++ ..+|. ||+|++.++|+++.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~---v~~~~~d~~~~~p~-~D~v~~~~~lh~~~- 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGSNN---LTYVGGDMFTSIPN-ADAVLLKYILHNWT- 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCBTT---EEEEECCTTTCCCC-CSEEEEESCGGGSC-
T ss_pred cCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccCCC---cEEEeccccCCCCC-ccEEEeehhhccCC-
Confidence 45789999999999999998742 1247999999 799988765321 22222333 23444 99999999998553
Q ss_pred cCCHH--HHHHHHhhhccC---CcEEEEEeChh----------------------------hHHHHHHHHhcCCceEEEe
Q 010592 431 KCNIE--DILLEMDRILRP---EGAIIIRDEVD----------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 431 ~~~~~--~~l~e~~RvLrP---gG~~ii~d~~~----------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
+.. .+|.++.|+||| ||+++|.|... ..+++++++++.+++...+
T Consensus 261 --d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 338 (352)
T 1fp2_A 261 --DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI 338 (352)
T ss_dssp --HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred --HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEE
Confidence 444 899999999999 99999975320 1356778888899985543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.2e-10 Score=105.33 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=73.6
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-CCCCCeeEEEEcC
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM-P-YASRAFDMAHCSR 174 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l-p-~~~~sfDlV~~~~ 174 (506)
+.+|||||||+|.++..|++. .++++|+++.++..+.... ...++ .+.+...|.... + ..+++||+|++..
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNL-ATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 458999999999999999883 4899999987765544333 33443 477888887553 4 3368999999864
Q ss_pred cccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ......+++++.++|||||+|++..
T Consensus 151 ~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 151 A----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp T----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred c----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 3 3345789999999999999998853
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-09 Score=101.56 Aligned_cols=130 Identities=17% Similarity=0.075 Sum_probs=86.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCC-----CceeEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYP-----RTYDLI 419 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p-----~s~Dlv 419 (506)
..+|||+|||+|.++..|++.-....+|+++|.++.+++.|.++ |+...+...+.++ +.++ ++||+|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 46899999999999999987411135899999999999988875 3311122112221 1121 689999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------hhHHHHH----HHHhcCCceEEEeecCCCC
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVK----KIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~~~~~~~----~~~~~~~w~~~~~~~~~~~ 483 (506)
+++.. ......++.++.|+|||||.+++.+.. +....++ .+...-++++.+....+|
T Consensus 150 ~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG- 222 (229)
T 2avd_A 150 VVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDG- 222 (229)
T ss_dssp EECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTC-
T ss_pred EECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCCc-
Confidence 99432 345678999999999999999996532 1222233 345566788777655533
Q ss_pred CCCeEEEEEEe
Q 010592 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
+++++|
T Consensus 223 -----l~~~~k 228 (229)
T 2avd_A 223 -----LTLAFK 228 (229)
T ss_dssp -----EEEEEE
T ss_pred -----eEEEEE
Confidence 566666
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=104.75 Aligned_cols=97 Identities=10% Similarity=0.004 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...++ +..+...|+..++. .++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~-n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCE-NIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHH-HHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 4459999999999999999875 48999999877654443 3444444 46778888877744 6789999997643
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+...++.++.+.|+|||.++++..
T Consensus 197 -----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 456789999999999999999764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-09 Score=102.94 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=85.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC---C--CceeEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY---P--RTYDLI 419 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~---p--~s~Dlv 419 (506)
.++|||+|||+|.++..|++.-.....|+++|.++.+++.|.++ |+...+...+.+ ++.+ + ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 45899999999999999987521125899999999999988765 332212211222 2222 2 789999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------hHHHHHH----HHhcCCceEEEeecCCCC
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKK----IVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~----~~~~~~w~~~~~~~~~~~ 483 (506)
+++.. ..+...++.++.|+|||||++++.+..- ....+++ +...-++.+.+....||
T Consensus 153 ~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG- 225 (232)
T 3cbg_A 153 FIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDG- 225 (232)
T ss_dssp EECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBTC-
T ss_pred EECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCCe-
Confidence 98533 2355789999999999999999965321 2223333 34556777766654432
Q ss_pred CCCeEEEEEEe
Q 010592 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
+.+++|
T Consensus 226 -----~~~~~~ 231 (232)
T 3cbg_A 226 -----MTLALK 231 (232)
T ss_dssp -----EEEEEE
T ss_pred -----EEEEEe
Confidence 556665
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=111.97 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=74.0
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--Cc--EEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NV--IAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v--~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
.+.+.++. .....+|||||||+|.++..++++ ++ +++|+ + .+++.+++. ..+.+...|... +++.
T Consensus 199 ~l~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~~~-- 267 (372)
T 1fp1_D 199 RMLEIYTG-FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-P-----QVIENAPPL-SGIEHVGGDMFA-SVPQ-- 267 (372)
T ss_dssp HHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCC--
T ss_pred HHHHHhhc-cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-H-----HHHHhhhhc-CCCEEEeCCccc-CCCC--
Confidence 44444431 123469999999999999999876 34 44465 3 344444332 347788888766 6664
Q ss_pred eeEEEEcCcccccCCChH--HHHHHHHHhcCCCeEEEEEc
Q 010592 167 FDMAHCSRCLIPWGANDG--RYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~--~~l~e~~rvLkPGG~li~~~ 204 (506)
||+|++..+++||.+ +. .+|+++.++|||||+|++..
T Consensus 268 ~D~v~~~~~lh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 268 GDAMILKAVCHNWSD-EKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp EEEEEEESSGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEecccccCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999999988744 44 99999999999999999974
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-09 Score=101.22 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC---CCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM---PYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l---p~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..|++. .++++|+++.++..+ .+.+... ..+.+...|.... ....++||+|++.
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~-~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLREL-VPIVEER-RNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHH-HHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHH-HHHHhcc-CCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4569999999999999998854 488999988655333 2333333 4577777777652 1123589999986
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.. ..+. ..++.++.++|||||++++..
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 53 2233 455999999999999999973
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=102.42 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc-CCCC-----CCCeeE
Q 010592 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK-MPYA-----SRAFDM 169 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~-lp~~-----~~sfDl 169 (506)
+.+|||||||+|..+..+++. .++++|+++.++..+..... ..+. .+.+...|... ++.. .++||+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN-FAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH-HcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 458999999999999999873 48999999877655544333 3343 37777777643 3322 268999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|++.....++ .+...++.++ ++|||||+|++..
T Consensus 138 V~~d~~~~~~-~~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 138 VFLDHWKDRY-LPDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp EEECSCGGGH-HHHHHHHHHT-TCCCTTCEEEESC
T ss_pred EEEcCCcccc-hHHHHHHHhc-cccCCCeEEEEeC
Confidence 9998765443 2224567777 9999999999864
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=114.81 Aligned_cols=113 Identities=11% Similarity=0.074 Sum_probs=81.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
+.+.+.+.+.+.. .++.+|||||||+|.++..+++. .|+++|+++ ++. .+.+.+...++ .+.+...|...+
T Consensus 144 ~~~~~~il~~l~~--~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~-~A~~~~~~~gl~~~v~~~~~d~~~~ 219 (480)
T 3b3j_A 144 GTYQRAILQNHTD--FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQ-HAEVLVKSNNLTDRIVVIPGKVEEV 219 (480)
T ss_dssp HHHHHHHHHTGGG--TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHH-HHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHHhhhh--cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHH-HHHHHHHHcCCCCcEEEEECchhhC
Confidence 4455566665532 23469999999999999999876 478999976 553 33344444554 478888888887
Q ss_pred CCCCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEE
Q 010592 161 PYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~ 203 (506)
+++ ++||+|+|+.+++++..+ ....+.++.++|||||++++.
T Consensus 220 ~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 220 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred ccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 765 589999998776665432 256777899999999999864
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-09 Score=108.56 Aligned_cols=142 Identities=20% Similarity=0.138 Sum_probs=92.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC---CCCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST---YPRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~---~p~s~Dlv~ 420 (506)
..+....+|||+|||+|+++..++........|+++|.++.|++.|.++ |+. .++..+.++.. ....||+|.
T Consensus 199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~~~~D~Ii 277 (354)
T 3tma_A 199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFFPEVDRIL 277 (354)
T ss_dssp TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTCCCCSEEE
T ss_pred hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccccCCCCEEE
Confidence 3445567899999999999888876320114799999999999988875 331 22233344333 337799999
Q ss_pred EccccccccC-cCC----HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC-CCCCCCeEEEEEEe
Q 010592 421 AHGLFSLYKD-KCN----IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPEKILVAVK 494 (506)
Q Consensus 421 ~~~~~~~~~~-~~~----~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~l~~~k 494 (506)
++.-+..-.. ... ...++.++.|+|||||.++|..... +.++.+++ .+|+......- .|.... .+++.+|
T Consensus 278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~~~~~~~-~g~~~~~~~~l~~g~l~~-~i~vl~r 353 (354)
T 3tma_A 278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--ALLKRALP-PGFALRHARVVEQGGVYP-RVFVLEK 353 (354)
T ss_dssp ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HHHHHHCC-TTEEEEEEEECCBTTBCC-EEEEEEE
T ss_pred ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHhh-cCcEEEEEEEEEeCCEEE-EEEEEEc
Confidence 9766542111 111 2578999999999999999987653 34666777 88986543332 444333 3444444
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=110.04 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=75.8
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
.+.+.++. .....+|||||||+|.++..++++ + ++++|+ + .+++.+.+. ..+.+...|... |++.+
T Consensus 191 ~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~D~~~-~~p~~- 260 (364)
T 3p9c_A 191 KLLELYHG-FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P-----HVISEAPQF-PGVTHVGGDMFK-EVPSG- 260 (364)
T ss_dssp HHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCCC-
T ss_pred HHHHhccc-ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H-----HHHHhhhhc-CCeEEEeCCcCC-CCCCC-
Confidence 34444431 123469999999999999999875 3 566666 3 333334332 467888888876 77754
Q ss_pred eeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 167 FDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+|++..++|+|.++. ..+|+++.++|||||+|++..
T Consensus 261 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 261 -DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999999998886533 689999999999999999964
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-09 Score=104.48 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEec-CccchHHHHHHHH----HHcCC------
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSF-APRDSHEAQVQFA----LERGV------ 148 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdi-s~~di~~~~~~~a----~~~~~------ 148 (506)
.+...+.+.+.+.... ..+.+|||||||+|.++..++.. .|+++|+ ++.++..+..+.. ...+.
T Consensus 62 ~~~~~l~~~l~~~~~~--~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~ 139 (281)
T 3bzb_A 62 SGARALADTLCWQPEL--IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRA 139 (281)
T ss_dssp CHHHHHHHHHHHCGGG--TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------C
T ss_pred cHHHHHHHHHHhcchh--cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCC
Confidence 4455566666655422 23459999999999999988876 4889999 7766654443331 22222
Q ss_pred CeEEEEeccccCC--C----CCCCeeEEEEcCcccccCCChHHHHHHHHHhcC---C--CeEEEEEcC
Q 010592 149 PAVIGVLGTIKMP--Y----ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLR---P--GGYWVLSGP 205 (506)
Q Consensus 149 ~~~~~~~d~~~lp--~----~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLk---P--GG~li~~~p 205 (506)
.+.+...+..... + ++++||+|+++.++++ .++...+++++.++|+ | ||.+++...
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~-~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 140 SPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF-HQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp CCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC-GGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred CeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC-hHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 2444433322210 1 3578999999988866 4556899999999999 9 998877643
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=103.08 Aligned_cols=99 Identities=15% Similarity=-0.010 Sum_probs=71.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CC--CCceeEEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TY--PRTYDLIHA 421 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~--p~s~Dlv~~ 421 (506)
......+|||+|||+|.++..|++......+|+++|.++++++.+.++ |+. .+...+.++. .+ +++||+|++
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~ 152 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEPLAPYDRIYT 152 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCCCCCeeEEEE
Confidence 334456899999999999999987431114799999999999998876 221 1222222221 12 378999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
..++.+.. .++.|+|||||.+++....
T Consensus 153 ~~~~~~~~---------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 153 TAAGPKIP---------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred CCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence 88887543 4899999999999997654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=94.29 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=89.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCCCCCceeEEEEcccccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
...+|||+|||+|.++..+++.+. .+|+++|.++.|++.+.++.. .+ .+...+.++..++.+||+|.++..|....
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 356899999999999999988752 379999999999999988631 11 23333455555678999999988776544
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhcCCceEEEe
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
. .....+|.++.++| ||.+++. ......+.+.+++...+|++..+
T Consensus 127 ~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 127 K-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp T-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred C-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 2 23357899999999 6655444 25566777888888899987644
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=100.09 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~ 155 (506)
.....++..+.... .+.+|||||||+|..+..+++. .++++|+++.++..+...... .+. .+.+...
T Consensus 42 ~~~~~~l~~l~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~ 115 (210)
T 3c3p_A 42 RQTGRLLYLLARIK-----QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD-NGLIDRVELQVG 115 (210)
T ss_dssp HHHHHHHHHHHHHH-----CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HSGGGGEEEEES
T ss_pred HHHHHHHHHHHHhh-----CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-CCCCceEEEEEe
Confidence 33444555444433 2358999999999999999865 488999988766554443332 333 3667777
Q ss_pred cccc-CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIK-MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~-lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|... ++..++ ||+|++... ..+...+++++.++|||||++++..
T Consensus 116 d~~~~~~~~~~-fD~v~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 116 DPLGIAAGQRD-IDILFMDCD----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp CHHHHHTTCCS-EEEEEEETT----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred cHHHHhccCCC-CCEEEEcCC----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 7754 354456 999998642 2445889999999999999999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.8e-09 Score=101.15 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~ 155 (506)
.....++..+.... .+.+|||||||+|..+..|++. .|+++|+++.++..+..... ..+. .+.+..+
T Consensus 46 ~~~~~~l~~l~~~~-----~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~g 119 (242)
T 3r3h_A 46 PEQAQFMQMLIRLT-----RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR-EAKQEHKIKLRLG 119 (242)
T ss_dssp HHHHHHHHHHHHHH-----TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHH-HTTCTTTEEEEES
T ss_pred HHHHHHHHHHHhhc-----CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEc
Confidence 33344545554433 2358999999999999999873 48999999988765554433 3343 4777777
Q ss_pred ccccC-CCC-----CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIKM-PYA-----SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~l-p~~-----~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+... +.. .++||+|++... ..+...+++++.++|||||+|++..
T Consensus 120 da~~~l~~~~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 120 PALDTLHSLLNEGGEHQFDFIFIDAD----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp CHHHHHHHHHHHHCSSCEEEEEEESC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CHHHHHHHHhhccCCCCEeEEEEcCC----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 77543 221 478999998653 2334678999999999999999964
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=103.19 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=70.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC------CCcee
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY------PRTYD 417 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~------p~s~D 417 (506)
..++|||+|||+|..+..|++.-.....|+++|.++.|++.|.++ |+...+...+.+ ++.+ +++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 346899999999999999887411125899999999999988764 432212222222 2223 57999
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|+++.. ......++.++.|+|||||.+++.+
T Consensus 159 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9998532 2356789999999999999999865
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=102.65 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=71.8
Q ss_pred CCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC---CCCC-CCeeEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM---PYAS-RAFDMA 170 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l---p~~~-~sfDlV 170 (506)
+.+|||||||+|..+..|++. .|+++|+++.++..+. ....++.+.++|.... +... .+||+|
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 348999999999999998763 4899999998764332 2234578888888763 5433 479999
Q ss_pred EEcCcccccCCChHHHHHHHHH-hcCCCeEEEEEcC
Q 010592 171 HCSRCLIPWGANDGRYMIEVDR-VLRPGGYWVLSGP 205 (506)
Q Consensus 171 ~~~~~l~~~~~~~~~~l~e~~r-vLkPGG~li~~~p 205 (506)
++... | .+...++.++.| +|||||+|++...
T Consensus 157 ~~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 157 FIDNA--H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEESS--C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 98654 3 356789999997 9999999999753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.6e-09 Score=100.17 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=77.2
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~s 166 (506)
.+...+... ++.+|||+|||+|.++..+++. .++++|+++..+..+....+ ..++ .+.+...|.....+++++
T Consensus 82 ~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLNLN--KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-KFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHH-HTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcCCC--CCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCCcEEEEEcChhhcccCCCc
Confidence 445555433 3459999999999999998875 58889998866654443332 3343 466777777664436678
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
||+|++.. +++..+++++.++|+|||.+++..+.
T Consensus 159 ~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVDV------REPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEECS------SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999842 34568899999999999999998764
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-09 Score=111.09 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=85.4
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-CCCCceeEEEEccccccc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-TYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-~~p~s~Dlv~~~~~~~~~ 428 (506)
..+..+|||+|||+|.++..|++... ...++++|. +.|++.|.+..- +...+.++. .+|. ||+|++.++|+++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~---v~~~~~d~~~~~~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPPLSG---IEHVGGDMFASVPQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCCTT---EEEEECCTTTCCCC-EEEEEEESSGGGS
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhhcCC---CEEEeCCcccCCCC-CCEEEEecccccC
Confidence 34567999999999999999987532 257888999 789987765321 222223332 2345 9999999999854
Q ss_pred cCcCCHH--HHHHHHhhhccCCcEEEEEeCh-------------h----------------hHHHHHHHHhcCCceEEEe
Q 010592 429 KDKCNIE--DILLEMDRILRPEGAIIIRDEV-------------D----------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 429 ~~~~~~~--~~l~e~~RvLrPgG~~ii~d~~-------------~----------------~~~~~~~~~~~~~w~~~~~ 477 (506)
. +.. .+|.++.|+|||||+|+|.|.. . ..+++++++++.+|+....
T Consensus 281 ~---d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 357 (372)
T 1fp1_D 281 S---DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV 357 (372)
T ss_dssp C---HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred C---HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEE
Confidence 3 444 8999999999999999997421 0 2356777888888885543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-10 Score=108.70 Aligned_cols=117 Identities=11% Similarity=0.139 Sum_probs=73.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK 159 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~ 159 (506)
..+++.+.+.+.....++.+|||+|||+|.++..++.+ .++++|+++.++..+..+. ...++. +.+...|...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~ 127 (254)
T 2h00_A 49 IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV-EQNNLSDLIKVVKVPQKT 127 (254)
T ss_dssp HHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTC
T ss_pred HHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHcCCCccEEEEEcchhh
Confidence 44545555544321124568999999999998888764 5899999987776555443 334443 6777777654
Q ss_pred C---CCC---CCCeeEEEEcCcccccCC--------------ChHHHHHHHHHhcCCCeEEEEE
Q 010592 160 M---PYA---SRAFDMAHCSRCLIPWGA--------------NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 160 l---p~~---~~sfDlV~~~~~l~~~~~--------------~~~~~l~e~~rvLkPGG~li~~ 203 (506)
. +++ +++||+|+|+..+++... ....++.++.++|||||.+.+.
T Consensus 128 ~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 128 LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 2 444 268999999866544320 0124577889999999987664
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-09 Score=103.89 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCCceEEeecC------cccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC--CCCceeEEEEc
Q 010592 351 GRYRNIMDMNA------GFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST--YPRTYDLIHAH 422 (506)
Q Consensus 351 ~~~r~vLD~gc------G~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~--~p~s~Dlv~~~ 422 (506)
....+|||+|| |+|+ ..+++.-.....|+++|.++. + + ++ ... .+.++.. ++++||+|+|+
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v----~-~v-~~~--i~gD~~~~~~~~~fD~Vvsn 130 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V----S-DA-DST--LIGDCATVHTANKWDLIISD 130 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B----C-SS-SEE--EESCGGGCCCSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C----C-CC-EEE--EECccccCCccCcccEEEEc
Confidence 34568999999 5576 222221000147999999976 2 1 22 120 1233333 24899999996
Q ss_pred cccccc--------cCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010592 423 GLFSLY--------KDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 423 ~~~~~~--------~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
...+.. .+...++.+|.++.|+|||||.|++.... ....++.+++++.+|.......- ...+.|.+|+++
T Consensus 131 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~as-r~~s~e~~lv~~ 209 (290)
T 2xyq_A 131 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNV-NASSSEAFLIGA 209 (290)
T ss_dssp CCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGG-GTTSSCEEEEEE
T ss_pred CCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEc-CCCchheEEecC
Confidence 443211 01112458999999999999999996633 33457888888887753322221 122367888877
Q ss_pred e
Q 010592 494 K 494 (506)
Q Consensus 494 k 494 (506)
.
T Consensus 210 ~ 210 (290)
T 2xyq_A 210 N 210 (290)
T ss_dssp E
T ss_pred C
Confidence 6
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-09 Score=104.98 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=89.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CCCce---eEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YPRTY---DLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p~s~---Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|+.. ...+|+++|.|+.+++.|.++ |+...+...+.++.. ++++| |+|.++.-
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 347999999999999999875 236899999999999998875 332112233333332 34689 99999622
Q ss_pred cc-----------ccc-----CcCCHHHHHHHHh-hhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCCCCCe
Q 010592 425 FS-----------LYK-----DKCNIEDILLEMD-RILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE 487 (506)
Q Consensus 425 ~~-----------~~~-----~~~~~~~~l~e~~-RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 487 (506)
+. +.. ..++-..++.++. +.|+|||++++.-.....+.+.+++.+. . ...|.. ...
T Consensus 202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~--~-~~~D~~----g~~ 274 (284)
T 1nv8_A 202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT--V-FLKDSA----GKY 274 (284)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC--E-EEECTT----SSE
T ss_pred CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC--C-eecccC----CCc
Confidence 11 110 0112226899999 9999999999976666667788877765 2 222222 246
Q ss_pred EEEEEEec
Q 010592 488 KILVAVKQ 495 (506)
Q Consensus 488 ~~l~~~k~ 495 (506)
.+++++++
T Consensus 275 R~~~~~~k 282 (284)
T 1nv8_A 275 RFLLLNRR 282 (284)
T ss_dssp EEEEEECC
T ss_pred eEEEEEEc
Confidence 67776654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=106.49 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHH-H-HHcCCCeEEE--EeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQF-A-LERGVPAVIG--VLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~-a-~~~~~~~~~~--~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||||||+|.++..++++ .|+++|+++ +...+..+. . ...+.++.+. +.|+..+| +++||+|+|..+
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~- 157 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG- 157 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-
T ss_pred CCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-
Confidence 4569999999999999999886 699999998 531110000 0 0001145667 77887776 679999999866
Q ss_pred cccCCCh----H---HHHHHHHHhcCCCe--EEEEEc
Q 010592 177 IPWGAND----G---RYMIEVDRVLRPGG--YWVLSG 204 (506)
Q Consensus 177 ~~~~~~~----~---~~l~e~~rvLkPGG--~li~~~ 204 (506)
.+ ..++ . .+|.++.++||||| .|++..
T Consensus 158 ~~-~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 158 ES-NPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp CC-CSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred cC-CCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 22 2221 1 37899999999999 999865
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-09 Score=106.73 Aligned_cols=126 Identities=13% Similarity=0.067 Sum_probs=83.0
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC---CCCCCceeEEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF---STYPRTYDLIHA 421 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~---~~~p~s~Dlv~~ 421 (506)
......+|||+|||+|+++.+|++.-.....|+++|.++.|++.+.++ |+. .+...+.++ +..+++||+|.+
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il~ 193 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILL 193 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEEE
Confidence 334456899999999999999986311124799999999999988776 431 122223333 333579999998
Q ss_pred ccccc---cccCcCCH----------------HHHHHHHhhhccCCcEEEEEeC----hhhHHHHHHHHhcCCceEE
Q 010592 422 HGLFS---LYKDKCNI----------------EDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 422 ~~~~~---~~~~~~~~----------------~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~~w~~~ 475 (506)
+.-.+ .+.+..++ ..+|.++.|+|||||+++++.- .+....++.+++..+++..
T Consensus 194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~ 270 (315)
T 1ixk_A 194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELL 270 (315)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEe
Confidence 43221 11111111 4799999999999999999642 2344567777777776643
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.90 E-value=7.3e-09 Score=101.64 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=76.6
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~ 163 (506)
.+...+... ++.+|||+|||+|.++..+++. .++++|+++..+..+..+ ....+. .+.+...|.... ++
T Consensus 103 ~i~~~~~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 103 FIAMMLDVK--EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN-LTKWGLIERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH-HHHTTCGGGEEEECCCGGGC-CS
T ss_pred HHHHHhCCC--CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH-HHHcCCCCCEEEEECCHHHc-cc
Confidence 344444333 3459999999999999988765 388899988666444333 333343 466777777665 66
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++||+|++.. +++..++.++.++|+|||.+++..+.
T Consensus 179 ~~~~D~V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 179 EKDVDALFLDV------PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp CCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred CCccCEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 67899999842 34568899999999999999998753
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-09 Score=105.17 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHH-HH-HHcCCCeEEE--EeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQ-FA-LERGVPAVIG--VLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~-~a-~~~~~~~~~~--~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||||||+|.++..++++ .|+++|+++ ++..+..+ .. ...+.++.+. +.|+..++ +++||+|+|..+
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~- 149 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG- 149 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-
T ss_pred CCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-
Confidence 4569999999999999999886 699999998 43111000 00 0011145666 77877765 679999999765
Q ss_pred cccCCCh----H---HHHHHHHHhcCCCe--EEEEEc
Q 010592 177 IPWGAND----G---RYMIEVDRVLRPGG--YWVLSG 204 (506)
Q Consensus 177 ~~~~~~~----~---~~l~e~~rvLkPGG--~li~~~ 204 (506)
.+ ..+. . .+|.++.++||||| .|++.+
T Consensus 150 ~~-~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 150 ES-SPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp CC-CSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cc-CCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 22 2221 1 37899999999999 999865
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-09 Score=107.04 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=86.0
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-CCCCceeEEEEccccccc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-TYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-~~p~s~Dlv~~~~~~~~~ 428 (506)
..+..+|||||||+|.++..|++.. ....++.+|. +.|++.|.++.-+. ..+.++. .+|.. |+|++.++++++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~---~~~~D~~~~~p~~-D~v~~~~vlh~~ 272 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQFPGVT---HVGGDMFKEVPSG-DTILMKWILHDW 272 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCCTTEE---EEECCTTTCCCCC-SEEEEESCGGGS
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhcCCeE---EEeCCcCCCCCCC-CEEEehHHhccC
Confidence 4567899999999999999998742 1247899999 68888776543222 2223332 34444 999999999854
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------------hHHHHHHHHhcCCceEEEe
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
.+ .+...+|+++.|+|||||+|+|.|..- ..+++++++++.+|+...+
T Consensus 273 ~d-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~ 350 (364)
T 3p9c_A 273 SD-QHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKS 350 (364)
T ss_dssp CH-HHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEE
Confidence 31 245689999999999999999965320 1355778889999986543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.90 E-value=8.8e-09 Score=104.08 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEeccccC--CCCCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIKM--PYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~l--p~~~~sfDlV~ 171 (506)
.+.+|||||||+|.++..|++. .++++|+++.++..+...+... ....+.+...|.... .+++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 3469999999999999999876 4899999887665554433321 124577888886543 23467899999
Q ss_pred EcCcccccC--CC--hHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWG--AN--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~--~~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.... ++. .+ ...+++++.++|+|||.|++..
T Consensus 200 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 96432 221 11 2689999999999999999974
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.2e-10 Score=122.01 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccC--CCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKM--PYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~-~~~~~~~~d~~~l--p~~~~sfDlV~~~~~l 176 (506)
.+.+|||||||.|.++..|++.| |+++|+++.++..+. ..|.+.+ .++.+.+.++.++ ++++++||+|+|..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCR-ALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 34689999999999999999985 888888887775444 3444454 6788888888877 5678899999999999
Q ss_pred cccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010592 177 IPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
+|+.+.. -..+..+.+.|+++|..++
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~ 171 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVI 171 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred hcCCCHHHHHHHHHHHHHhccccceee
Confidence 9964321 2445567777887765544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=102.85 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=68.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--------cceeccccccCCC---CCCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--------IGIYHDWCEAFST---YPRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--------~~~~~~~~~~~~~---~p~s~Dlv~ 420 (506)
...+|||+|||+|.++..|++......+|+++|.++.+++.+.++.- ...+...+.++.. .+++||+|+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 45689999999999999988641111489999999999998876521 1122222233322 237899999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+...+.+ ++.++.|+|||||++++....
T Consensus 157 ~~~~~~~---------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 157 VGAAAPV---------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp ECSBBSS---------CCHHHHHTEEEEEEEEEEESC
T ss_pred ECCchHH---------HHHHHHHhcCCCcEEEEEEec
Confidence 9776642 347899999999999997543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.3e-09 Score=106.04 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=78.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
..|.++|.+.... -++.+|||||||+|.++...++.| |+++|.++ ++ ..+.+.++.++.. +.+...++..+
T Consensus 69 ~aY~~Ai~~~~~~--~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~~ 144 (376)
T 4hc4_A 69 DAYRLGILRNWAA--LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVETV 144 (376)
T ss_dssp HHHHHHHHTTHHH--HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhCHHh--cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeeee
Confidence 4454555432211 134589999999999988888764 89999986 54 4445566666654 67777888888
Q ss_pred CCCCCCeeEEEEcCccccc--CCChHHHHHHHHHhcCCCeEEEEE
Q 010592 161 PYASRAFDMAHCSRCLIPW--GANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~--~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.++ +.||+|+|......+ ......++....|+|||||.++-.
T Consensus 145 ~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 145 ELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp CCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 776 579999984332211 223478888899999999998753
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.4e-09 Score=99.46 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=71.3
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-CC---CCCeeEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM-P-YA---SRAFDMA 170 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l-p-~~---~~sfDlV 170 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+..... ..+. .+.+...|.... + ++ .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIE-RANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 458999999999999999876 38899998876655444333 3344 367777776432 2 11 2679999
Q ss_pred EEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 171 HCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 171 ~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++.... .....++.++.++|||||++++...
T Consensus 138 ~~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 138 FIDADK----QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EECSCG----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEcCCc----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 986542 2347899999999999999988754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-09 Score=103.56 Aligned_cols=140 Identities=18% Similarity=0.107 Sum_probs=86.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----c--------cceeccccccCCCC---CCce
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----L--------IGIYHDWCEAFSTY---PRTY 416 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----~--------~~~~~~~~~~~~~~---p~s~ 416 (506)
..+|||+|||+|.++..+++.+ ..+|+++|.++.|++.|+++- + ...+...+++...+ +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 4689999999999999998863 368999999999999998752 1 11122222322111 6789
Q ss_pred eEEEEccccccccCcCC--HHHHHHHHhhhccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeec-CCCCCCCeE
Q 010592 417 DLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDH-EDGPLVPEK 488 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~ 488 (506)
|+|+++..... ..... ...++.++.|+|||||.+++... .+....+.+.++..--.+..... ...-...+.
T Consensus 154 D~Ii~d~~~~~-~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~ 232 (281)
T 1mjf_A 154 DVIIADSTDPV-GPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWA 232 (281)
T ss_dssp EEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEE
T ss_pred eEEEECCCCCC-CcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEE
Confidence 99998544321 11112 26789999999999999999632 22333343433333222222111 111123577
Q ss_pred EEEEEec
Q 010592 489 ILVAVKQ 495 (506)
Q Consensus 489 ~l~~~k~ 495 (506)
+++|.|.
T Consensus 233 ~~~as~~ 239 (281)
T 1mjf_A 233 FLVGVKG 239 (281)
T ss_dssp EEEEEES
T ss_pred EEEeeCC
Confidence 8888886
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-09 Score=112.12 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=73.9
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHH-------Hhc----Cc-cceecccc-ccCCC---
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI-------YER----GL-IGIYHDWC-EAFST--- 411 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~-------~~r----g~-~~~~~~~~-~~~~~--- 411 (506)
+......+|||+|||+|.++..|+.... ...|+++|.++.+++.| .++ |+ ...+...+ .++..
T Consensus 238 l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~ 316 (433)
T 1u2z_A 238 CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR 316 (433)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc
Confidence 3344567899999999999999987411 23799999999998887 543 42 12222222 23321
Q ss_pred ---CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 412 ---YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 412 ---~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.+.+||+|+++.++. ..++..+|.|+.|+|||||.+++.+..
T Consensus 317 ~~~~~~~FDvIvvn~~l~----~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 317 VAELIPQCDVILVNNFLF----DEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp HHHHGGGCSEEEECCTTC----CHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cccccCCCCEEEEeCccc----cccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 137899999865541 236678999999999999999998643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.2e-09 Score=104.44 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||+|||+|..+..|++. .++++|+++.++..+..+. ...+. ++.+...|...++..+++||+|++...
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNL-SRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHH-HHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH-HHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 4559999999999999999863 3899999887665444333 33344 567777888776655678999998421
Q ss_pred ------ccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 176 ------LIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 ------l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+.+ .++ ...+|.++.++|||||+|++++..
T Consensus 197 csg~g~~~~-~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 197 CTGSGTIHK-NPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp TTSTTTCC---------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCcccccC-ChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 211 111 147899999999999999997643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-09 Score=106.68 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEeccccCCC--CCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIKMPY--ASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~----~~~~~~~~~~~d~~~lp~--~~~sfDlV~ 171 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+...+.. .....+.+...|...++. ++++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 3469999999999999999876 488999988666544433221 112457788888766543 478999999
Q ss_pred EcCcccccCCCh----HHHHHHHHHhcCCCeEEEEEcC
Q 010592 172 CSRCLIPWGAND----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 172 ~~~~l~~~~~~~----~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.... +..+.. ..+++++.++|||||+|++...
T Consensus 175 ~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 175 IDTTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 97654 322222 5889999999999999999754
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.9e-09 Score=95.99 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=66.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-----------CCCee
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA-----------SRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~-----------~~sfD 168 (506)
++.+|||+|||+|.++..++++ .|+++|+++... ...+.+.+.|+...+.. .++||
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVD 93 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcce
Confidence 4569999999999999999987 489999987421 12467778887665421 14899
Q ss_pred EEEEcCcccc---cCCC-------hHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLIP---WGAN-------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~---~~~~-------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|+|...... +..+ ...++.++.++|||||.|++..
T Consensus 94 ~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 94 DVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999653210 0001 1367889999999999999875
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.9e-09 Score=104.85 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=73.0
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-----------CCCeEEEE
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-----------GVPAVIGV 154 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~-----------~~~~~~~~ 154 (506)
.+...+... ++.+|||+|||+|.++..++.. .++++|+++..+..+..+..... ...+.+..
T Consensus 96 ~~l~~l~~~--~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 96 MILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHTCC--TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 344444333 4559999999999999998764 38899998876655554443211 13577778
Q ss_pred eccccC--CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 155 LGTIKM--PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 155 ~d~~~l--p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.|...+ ++++++||+|++... ++..++.++.++|||||.|++..+
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 888765 566778999998542 233479999999999999998865
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.9e-10 Score=107.26 Aligned_cols=118 Identities=12% Similarity=0.047 Sum_probs=76.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCC--ChhHHHHhh-----CCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGV--ASWGAYLWS-----RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~--G~~~~~L~~-----~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~ 158 (506)
..|+......+.. ....++|||||||+ +.++..+++ ..|+++|.|+.|+..+...........+.+.+.|+.
T Consensus 63 r~fl~rav~~l~~-~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~ 141 (277)
T 3giw_A 63 RDWMNRAVAHLAK-EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADML 141 (277)
T ss_dssp HHHHHHHHHHHHH-TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTT
T ss_pred HHHHHHHHHHhcc-ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEeccc
Confidence 3444455555421 12346899999997 334444433 258999999887765544332211123678888886
Q ss_pred cCC----CC--CCCee-----EEEEcCcccccCCC--hHHHHHHHHHhcCCCeEEEEEc
Q 010592 159 KMP----YA--SRAFD-----MAHCSRCLIPWGAN--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 159 ~lp----~~--~~sfD-----lV~~~~~l~~~~~~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++ .+ .++|| .|+++.+|||+.++ +..+++++.+.|+|||+|+++.
T Consensus 142 ~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 142 DPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp CHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred ChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 642 11 34565 57888888665443 3689999999999999999985
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=114.91 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=72.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGL 424 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~ 424 (506)
....+|||+|||+|.++..+++.+. .+|+++|.++ |++.|.++ |+...+...+.++.. +++.||+|.+..+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~ 233 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPM 233 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCC
T ss_pred cCCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCc
Confidence 3456899999999999999988652 4899999997 98877664 442223333444443 3489999999777
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
+.+..+ .++...|.++.|+|||||++++
T Consensus 234 ~~~~~~-e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 234 GYMLFN-ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHHTC-HHHHHHHHHGGGGEEEEEEEES
T ss_pred hHhcCc-HHHHHHHHHHHHhcCCCCEEEE
Confidence 664432 2456678899999999999986
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-09 Score=101.48 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=72.2
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC-CCC--CCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM-PYA--SRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l-p~~--~~sfDlV~~~ 173 (506)
+.+|||||||+|.++..+++. .++++|+++..+..+.... ...+. .+.+...|.... +.. +++||+|++.
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHV-KALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHH-HHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 458999999999999998875 4889999886664444333 23343 367777776553 432 5789999997
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
... .+...+++++.++|||||.+++..
T Consensus 134 ~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 134 AAK----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 653 345889999999999999999974
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=94.37 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-------------CcEEEecCccchHHHHHHHHHHcCCCeEEE-EeccccCC------
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-------------NVIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTIKMP------ 161 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-------------~v~~vdis~~di~~~~~~~a~~~~~~~~~~-~~d~~~lp------ 161 (506)
++.+|||+|||+|.++..|+++ .++++|+++... ...+.+. ..|....+
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHHH
Confidence 3469999999999999998864 278999987320 1234555 55654332
Q ss_pred --CCCCCeeEEEEcCcccc---cCCCh-------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 162 --YASRAFDMAHCSRCLIP---WGAND-------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 --~~~~sfDlV~~~~~l~~---~~~~~-------~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++++||+|+|..+++. +..+. ..+++++.++|||||.|++...
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 34568999999764421 11122 3789999999999999999864
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.8e-09 Score=107.72 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=84.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC-CCCceeEEEEccccccccC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-YPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~-~p~s~Dlv~~~~~~~~~~~ 430 (506)
+..+|||||||+|.++..|++.. ....++.+|. +.|++.|.+.. . +...+.++.. +| .||+|++.++|+++.+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~--~-v~~~~~d~~~~~~-~~D~v~~~~vlh~~~d 266 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTGNE--N-LNFVGGDMFKSIP-SADAVLLKWVLHDWND 266 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCCCS--S-EEEEECCTTTCCC-CCSEEEEESCGGGSCH
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhcccCC--C-cEEEeCccCCCCC-CceEEEEcccccCCCH
Confidence 45689999999999999998752 1246888899 58887765421 1 2222233322 33 5999999999985431
Q ss_pred cCCHHHHHHHHhhhccC---CcEEEEEeChh-----------------------------hHHHHHHHHhcCCceEEEee
Q 010592 431 KCNIEDILLEMDRILRP---EGAIIIRDEVD-----------------------------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrP---gG~~ii~d~~~-----------------------------~~~~~~~~~~~~~w~~~~~~ 478 (506)
. ....+|.++.|+||| ||+++|.|... ..+++++++++.+++...+.
T Consensus 267 ~-~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 345 (358)
T 1zg3_A 267 E-QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT 345 (358)
T ss_dssp H-HHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred H-HHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEE
Confidence 1 233899999999999 99999965320 23567788889999865443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-09 Score=100.33 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=100.1
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCC
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPR 414 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~ 414 (506)
|..++..+ ....+|||+|||+|-|+..+.... ....|.++|+++.|++++.++ |+...+ . ..++.. .+.
T Consensus 123 Y~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~~~~-~-v~D~~~~~p~~ 197 (281)
T 3lcv_B 123 YRELFRHL--PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVPHRT-N-VADLLEDRLDE 197 (281)
T ss_dssp HHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCCEEE-E-ECCTTTSCCCS
T ss_pred HHHHHhcc--CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceE-E-EeeecccCCCC
Confidence 66666655 337799999999999998887642 236899999999999988876 332211 1 133332 349
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC--hh---------hHHHHHHHHhcCCceEEEeecCCCC
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--VD---------EIIKVKKIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~--~~---------~~~~~~~~~~~~~w~~~~~~~~~~~ 483 (506)
.||++.+.-+++++..... . .+.++...|+|+|.+|--+. +. +...+++.+..-+|.+...+..
T Consensus 198 ~~DvaL~lkti~~Le~q~k-g-~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~--- 272 (281)
T 3lcv_B 198 PADVTLLLKTLPCLETQQR-G-SGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIG--- 272 (281)
T ss_dssp CCSEEEETTCHHHHHHHST-T-HHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEET---
T ss_pred CcchHHHHHHHHHhhhhhh-H-HHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeec---
Confidence 9999999887776542211 2 34499999999999999877 22 6778888888889987766655
Q ss_pred CCCeEEEEEEe
Q 010592 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
.|.+.+.+|
T Consensus 273 --nEl~y~i~k 281 (281)
T 3lcv_B 273 --NELIYVIQK 281 (281)
T ss_dssp --TEEEEEEC-
T ss_pred --CeeEEEecC
Confidence 565555544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-09 Score=99.73 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=69.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCC----eEEEEeecCCCcccHHHHHhc----Cc----cceeccccccCCC-C------
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKL----WVMNVVPTLADKNTLGVIYER----GL----IGIYHDWCEAFST-Y------ 412 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~----~~~~v~~~d~~~~~l~~~~~r----g~----~~~~~~~~~~~~~-~------ 412 (506)
...+|||+|||+|.++..|++... ...+|+++|.++.+++.|.++ ++ ...+...+.++.. .
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 346899999999999999987431 124899999999999988876 21 1122222333322 2
Q ss_pred CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+.+||+|++...+++ ++.++.++|||||++++.-.
T Consensus 160 ~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEc
Confidence 278999999777763 35889999999999999654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=102.82 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=81.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eeccccccCCCC-------CCceeEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFSTY-------PRTYDLI 419 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~~~~~~-------p~s~Dlv 419 (506)
...+|||+|||+|.++..++..+. .|+++|.++.|++.|.+. |+.. .+...+.++..+ +++||+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 345899999999999999998763 899999999999988775 3211 122333333221 4689999
Q ss_pred EEccc-ccccc------CcCCHHHHHHHHhhhccCCcEEEEEeCh-------hhHHHHHHHHhcCCceEE
Q 010592 420 HAHGL-FSLYK------DKCNIEDILLEMDRILRPEGAIIIRDEV-------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 420 ~~~~~-~~~~~------~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------~~~~~~~~~~~~~~w~~~ 475 (506)
.++.- |.... ...+...+|.++.|+|||||.+++.... ...+.+++.+..++.++.
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 98532 22110 1123567999999999999998875421 133445555667887765
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=100.81 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
...+.+++.+.+.+... .+.+|||+|||+|.++..++.. .++++|+++.++..+.. .+...++. +.+...|.
T Consensus 106 ~~te~lv~~~l~~~~~~--~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~-n~~~~~l~~~v~~~~~D~ 182 (284)
T 1nv8_A 106 PETEELVELALELIRKY--GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGEF 182 (284)
T ss_dssp TTHHHHHHHHHHHHHHH--TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESST
T ss_pred hhHHHHHHHHHHHhccc--CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcc
Confidence 34466767776665321 3348999999999999999865 48899998876654443 33444553 77887777
Q ss_pred ccCCCCCCCe---eEEEEcCccccc----------C--------CChHHHHHHHH-HhcCCCeEEEEEcCC
Q 010592 158 IKMPYASRAF---DMAHCSRCLIPW----------G--------ANDGRYMIEVD-RVLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~lp~~~~sf---DlV~~~~~l~~~----------~--------~~~~~~l~e~~-rvLkPGG~li~~~p~ 206 (506)
.. +++ ++| |+|+++..++.. . .+...+++++. +.|+|||.|++..+.
T Consensus 183 ~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 183 LE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp TG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred hh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 55 222 478 999997433211 1 11127899999 999999999998653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-09 Score=106.08 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=65.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-CcEEEec----CccchHHHHHHHHHHcC-CCeEEEEe-ccccCCCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-NVIAMSF----APRDSHEAQVQFALERG-VPAVIGVL-GTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-~v~~vdi----s~~di~~~~~~~a~~~~-~~~~~~~~-d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..++++ .|+++|+ ++.++.... ....+ ..+.+.+. |+..++ .++||+|+|..
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~ 156 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDI 156 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred CCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEECC
Confidence 4569999999999999999987 5899999 443221100 00111 23555555 555554 56899999976
Q ss_pred ccc--ccCCChH---HHHHHHHHhcCCCeEEEEEcC
Q 010592 175 CLI--PWGANDG---RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~--~~~~~~~---~~l~e~~rvLkPGG~li~~~p 205 (506)
++. ++..+.. .+|.++.++|||||.|++...
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 542 1111122 478899999999999998653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=98.14 Aligned_cols=98 Identities=9% Similarity=-0.010 Sum_probs=69.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC------CCcee
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY------PRTYD 417 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~------p~s~D 417 (506)
+.++|||+|||+|..+..|++.-.....|+++|.++.+++.|.++ |+...+...+.+ ++.+ +++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 356899999999999999886411125899999999999988764 432112111121 2223 47899
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|+++.. .......+.++.|+|||||.+++.+
T Consensus 150 ~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 150 FGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9998432 2245789999999999999999965
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=98.77 Aligned_cols=144 Identities=14% Similarity=0.100 Sum_probs=91.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc----CCCCCCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA----FSTYPRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~----~~~~p~s~Dlv~ 420 (506)
..++|||+|||+|.++..+++.. .+..|+.+|.++.|++.|++.- + ...+.-.+++ ++..+++||+|.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35789999999999999998862 1368999999999999998752 2 1112222233 222358999999
Q ss_pred EccccccccC-cCCHHHHHHHHhhhccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec-CCC-CCCCeEEEEE
Q 010592 421 AHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH-EDG-PLVPEKILVA 492 (506)
Q Consensus 421 ~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~-~~~-~~~~~~~l~~ 492 (506)
++........ ......++.++.|+|||||.+++.... +....+.+.+++.--.+..... ... +...+.+++|
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~a 233 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIG 233 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEe
Confidence 9654322110 111257999999999999999997432 2344455555555333333221 111 1235788899
Q ss_pred Eecc
Q 010592 493 VKQY 496 (506)
Q Consensus 493 ~k~~ 496 (506)
.|++
T Consensus 234 sk~~ 237 (275)
T 1iy9_A 234 SKKY 237 (275)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9873
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=101.78 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=86.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc----CCCCCCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA----FSTYPRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~----~~~~p~s~Dlv~~ 421 (506)
..+|||+|||+|.++..+++.. .+.+|+++|.++.+++.|.++- + ...+...+.+ ++..+++||+|.+
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4689999999999999998862 1368999999999999988752 1 1112222232 2333588999998
Q ss_pred ccccccccCcC--CHHHHHHHHhhhccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec-C-CCCCCCeEEEEE
Q 010592 422 HGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH-E-DGPLVPEKILVA 492 (506)
Q Consensus 422 ~~~~~~~~~~~--~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~-~-~~~~~~~~~l~~ 492 (506)
+..-....... ....++.++.|+|||||.+++.... .....+.+.+++.--.+..... . .-+...+.+++|
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~a 249 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 249 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEe
Confidence 43211011111 1267999999999999999997432 2223333333333223332211 1 111235778889
Q ss_pred Eecc
Q 010592 493 VKQY 496 (506)
Q Consensus 493 ~k~~ 496 (506)
.|++
T Consensus 250 s~~~ 253 (296)
T 1inl_A 250 SKGI 253 (296)
T ss_dssp ESSC
T ss_pred cCCC
Confidence 8874
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.1e-09 Score=107.24 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
...+|||||||+|.++..++++ .++++|+ +. +++.+++. ..+.+...|... +++. ||+|++..+++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~-----~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh 257 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQ-----VVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILH 257 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH-----HHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HH-----HHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhc
Confidence 3459999999999999999865 3677777 43 33444332 247777788755 5553 99999999998
Q ss_pred ccCCChH--HHHHHHHHhcCC---CeEEEEEc
Q 010592 178 PWGANDG--RYMIEVDRVLRP---GGYWVLSG 204 (506)
Q Consensus 178 ~~~~~~~--~~l~e~~rvLkP---GG~li~~~ 204 (506)
||.+ +. .+|+++.++||| ||++++..
T Consensus 258 ~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 258 NWTD-KDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp GSCH-HHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 8754 44 999999999999 99999975
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-09 Score=107.76 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=69.7
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC--CCCCCCeeEEEEcCccc
Q 010592 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM--PYASRAFDMAHCSRCLI 177 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l--p~~~~sfDlV~~~~~l~ 177 (506)
.+|||||||+|.++..|++. .++++|+++.++..+...+.......+.+.+.|.... .+++++||+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~- 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA- 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST-
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC-
Confidence 48999999999999999873 4788888775543332222111123577778887543 3456899999986432
Q ss_pred ccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 178 PWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 178 ~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.... ...+++++.++|+|||+|++..
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 22111 1689999999999999999865
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.2e-08 Score=92.77 Aligned_cols=97 Identities=13% Similarity=0.224 Sum_probs=69.8
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc-CC-------------
Q 010592 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK-MP------------- 161 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~-lp------------- 161 (506)
+.+|||||||+|.++..+++. .++++|+++..+..+.... ...+.. +.+...|... ++
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYW-KENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 458999999999999998864 4889999886664444333 333432 5666666533 12
Q ss_pred -CCC--CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 -YAS--RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 -~~~--~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|++ ++||+|++.... .+...+++++.++|||||++++..
T Consensus 140 ~f~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADK----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTCCSTTCEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccCCCCCcCEEEEeCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 789999997543 234688999999999999999864
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=7e-09 Score=106.17 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=70.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~~~ 426 (506)
..+|||||||+|.++...++.|. -.|+++|.+ +|+..|.+. |+-..+.....++.. +|..||+|.|--+-.
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s-~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA--RRVYAVEAS-AIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECS-TTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCC--CEEEEEeCh-HHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence 45799999999999877777653 479999998 588876652 542222222333333 468999999854444
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.+.+...++.++...+|.|||||.++-
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccchhhhHHHHHHhhCCCCceECC
Confidence 444555788999999999999998875
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.1e-08 Score=95.80 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=84.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------cceeccccccCCCCCCceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------~~~~~~~~~~~~~~p~s~Dlv~~~~~ 424 (506)
..++|||+|||+|.++..+++.+ ..|+.+|.+++|++.|+++-- ...+....++...+.++||+|.++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35789999999999999998873 689999999999998876521 011111223322222889999994
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-----hHHHHHHHHhcCCceEEEeecCCCC-CCCeEEEEEEecc
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVDHEDGP-LVPEKILVAVKQY 496 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~l~~~k~~ 496 (506)
-.++..++.++.|+|||||.+++..... ....+.+.+++. +.........-| ...+.+++|.|.+
T Consensus 147 ------~~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as~~~ 217 (262)
T 2cmg_A 147 ------QEPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_dssp ------SCCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEESSC
T ss_pred ------CCChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEeeCCC
Confidence 2344558999999999999999963221 233333334443 332222222111 2346677888863
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-09 Score=100.64 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=70.2
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC--CceeEEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP--RTYDLIHA 421 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p--~s~Dlv~~ 421 (506)
......+|||+|||+|.++..|++... .+|+++|.++.+++.|.++ |+. .+...+.++ ..++ ..||+|++
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPKAPYDVIIV 164 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCCCCCccEEEE
Confidence 334456899999999999999987532 4799999999999998875 221 122223332 1233 35999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+.++.+.. .++.++|||||.++|....
T Consensus 165 ~~~~~~~~---------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 165 TAGAPKIP---------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred CCcHHHHH---------HHHHHhcCCCcEEEEEEec
Confidence 88776433 4889999999999997654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.9e-09 Score=101.89 Aligned_cols=105 Identities=13% Similarity=0.003 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCC----CCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY----ASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~----~~~sfDlV~ 171 (506)
++.+|||+|||+|..+..|++. .++++|+++..+.... +.+...+. .+.+...|...++. ..++||+|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK-SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHH-HHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 4559999999999999998862 4899999887665433 33344454 56777778766653 357899999
Q ss_pred EcCcccc-----------------cCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 172 CSRCLIP-----------------WGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~~~~l~~-----------------~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+...... +......++.++.++|||||+|++++...
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 8622111 11334789999999999999999986543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.1e-09 Score=105.22 Aligned_cols=103 Identities=9% Similarity=-0.070 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCCC----CCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMPY----ASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~---~~~~~~d~~~lp~----~~~sfDlV~~ 172 (506)
++.+|||+|||+|.++..++..+ |+++|+++.++..+..+... .++. +.+.+.|+..+.. ..++||+|++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~-~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 34589999999999999998874 88899988777555444333 3443 6777777755321 1568999999
Q ss_pred cCcccc---------cCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 173 SRCLIP---------WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~---------~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...... ...+...++.++.++|||||+|++...
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 643211 112236889999999999999887654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-08 Score=94.56 Aligned_cols=134 Identities=11% Similarity=-0.025 Sum_probs=95.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccc-eeccccccCC--CCCCceeEEEEccccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIG-IYHDWCEAFS--TYPRTYDLIHAHGLFS 426 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~-~~~~~~~~~~--~~p~s~Dlv~~~~~~~ 426 (506)
....+|||+|||+|-|+..+. . ...++++|+++.|++++.+.. ..+ .......++. .++.+||+|.+.-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~---~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-G---IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-T---CSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc-c---CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 457799999999999999877 2 258999999999999988872 111 1111112333 2449999999987777
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEe--Chh---------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD--EVD---------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--~~~---------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
++.+... . .+.++...|+|+|.+|--+ .+. +...+++.+..-.|.+...+.. .|.+.+.+|.
T Consensus 180 ~LE~q~~-~-~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~-----nEl~~~i~~~ 252 (253)
T 3frh_A 180 LLEREQA-G-SAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIG-----TELIYLIKKN 252 (253)
T ss_dssp HHHHHST-T-HHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEET-----TEEEEEEEEC
T ss_pred Hhhhhch-h-hHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecC-----ceEEEEEecC
Confidence 6543322 1 4448888999999999877 221 6778888889999998877766 6777777774
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=100.61 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=80.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|.|+..+++... ...|+++|.++.+++.|.+. |+. .....+.++..+ +++||+|.++...
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECCcc
Confidence 346899999999999999987531 24899999999999988764 321 122223333333 4789999984332
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------h-HHHHHHHHhcCCceEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------E-IIKVKKIVGGMRWDTK 475 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------~-~~~~~~~~~~~~w~~~ 475 (506)
....++.++.|+|||||.+++.+... . .+.++.+.+.+++.+.
T Consensus 197 -------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 -------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred -------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 55679999999999999999976532 2 2334445555666544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=96.76 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecc
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGT 157 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~ 157 (506)
...++..+.... .+.+|||||||+|..+..+++. .++++|+++..+..+..... ..+. .+.+...+.
T Consensus 60 ~~~~l~~l~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~ 133 (232)
T 3cbg_A 60 QAQFLGLLISLT-----GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ-KAGVAEKISLRLGPA 133 (232)
T ss_dssp HHHHHHHHHHHH-----TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCH
T ss_pred HHHHHHHHHHhc-----CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCH
Confidence 344544444433 2358999999999999999875 48899998866654443333 2333 366777665
Q ss_pred c----cCCCCC--CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 158 I----KMPYAS--RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~----~lp~~~--~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. .++..+ ++||+|++... ..+...+++++.++|||||++++..
T Consensus 134 ~~~l~~l~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 134 LATLEQLTQGKPLPEFDLIFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp HHHHHHHHTSSSCCCEEEEEECSC----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCcCEEEECCC----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3 233334 78999998653 2334789999999999999999964
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=99.05 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~ 155 (506)
.....++..+.... .+.+|||||||+|..+..+++. .++++|+++.++..+.... .+.+. .+.+...
T Consensus 65 ~~~~~ll~~l~~~~-----~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~i~~~~g 138 (247)
T 1sui_A 65 ADEGQFLSMLLKLI-----NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI-KKAGVDHKIDFREG 138 (247)
T ss_dssp HHHHHHHHHHHHHT-----TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH-HHTTCGGGEEEEES
T ss_pred HHHHHHHHHHHHhh-----CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEEC
Confidence 33345555554443 2358999999999999998764 4899999987765444333 33444 3667777
Q ss_pred cccc-CCC------CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIK-MPY------ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~-lp~------~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... ++. ++++||+|++... ..+...+++++.++|||||+|++..
T Consensus 139 da~~~l~~l~~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 139 PALPVLDEMIKDEKNHGSYDFIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp CHHHHHHHHHHSGGGTTCBSEEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CHHHHHHHHHhccCCCCCEEEEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7643 232 1578999998643 2345789999999999999999863
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-09 Score=105.56 Aligned_cols=122 Identities=10% Similarity=0.005 Sum_probs=72.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-----CCCC----CceeE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-----STYP----RTYDL 418 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-----~~~p----~s~Dl 418 (506)
...+|||+|||+|.++..|+... ...+|+++|.++.|++.|.++ ++...+...+.++ ..++ ++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 34589999999999998887641 125899999999999988875 3311122222321 1233 58999
Q ss_pred EEEcccccccc---C---------cCCHHHHHHHHhhhccCCcEEEEEe---------------------ChhhHHHHHH
Q 010592 419 IHAHGLFSLYK---D---------KCNIEDILLEMDRILRPEGAIIIRD---------------------EVDEIIKVKK 465 (506)
Q Consensus 419 v~~~~~~~~~~---~---------~~~~~~~l~e~~RvLrPgG~~ii~d---------------------~~~~~~~~~~ 465 (506)
|.++.-+.... + ......++.++.|+|||||.+.+.+ .....+++.+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 223 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKE 223 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHH
Confidence 99985554221 0 0111245667777777777655421 1123367777
Q ss_pred HHhcCCceE
Q 010592 466 IVGGMRWDT 474 (506)
Q Consensus 466 ~~~~~~w~~ 474 (506)
++++.+++.
T Consensus 224 ~l~~~Gf~~ 232 (254)
T 2h00_A 224 ELRIQGVPK 232 (254)
T ss_dssp HHHHTTCSE
T ss_pred HHHHcCCCc
Confidence 888888863
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-08 Score=92.17 Aligned_cols=91 Identities=11% Similarity=-0.015 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+.+|||+|||+|.++..++.. .++++|+++.++ +.++++...+.+...|...++ ++||+|+++..+++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~-----~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-----ETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGS 122 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-----HHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHH-----HHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchh
Confidence 3458999999999999999876 388888876544 444443225778888888765 68999999998877
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 179 WGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
+.... ..+++++.++| |+ +++.
T Consensus 123 ~~~~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp -----CHHHHHHHHHHE--EE-EEEE
T ss_pred ccCchhHHHHHHHHHhc--Cc-EEEE
Confidence 64322 57899999998 55 4444
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=102.23 Aligned_cols=142 Identities=16% Similarity=0.113 Sum_probs=89.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------cceecccccc----CCCCCCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCEA----FSTYPRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------~~~~~~~~~~----~~~~p~s~Dlv~~ 421 (506)
..+|||+|||+|.++..+++.. .+.+|+++|.++.+++.|.++-- ...+...+.+ ++..+++||+|.+
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4689999999999999998752 23689999999999999987621 1112222233 2223589999998
Q ss_pred ccccccccCcCCH--HHHHHHHhhhccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec--CCCCCCCeEEEEE
Q 010592 422 HGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH--EDGPLVPEKILVA 492 (506)
Q Consensus 422 ~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~l~~ 492 (506)
+.. ....+...+ ..++.++.|+|||||.+++.... +....+.+.+++.--.+..... ..-+...+.+++|
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~a 274 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCC 274 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEEe
Confidence 542 211111122 68999999999999999996432 2334444445555334433221 1111124668888
Q ss_pred Eecc
Q 010592 493 VKQY 496 (506)
Q Consensus 493 ~k~~ 496 (506)
.|++
T Consensus 275 s~~~ 278 (321)
T 2pt6_A 275 SKTD 278 (321)
T ss_dssp ESST
T ss_pred eCCC
Confidence 8864
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.8e-09 Score=104.61 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=74.3
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH-Hc----CCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL-ER----GVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~-~~----~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
+.+|||||||+|.++..++++ .++++|+++.++..+...+.. .. ...+.+...|... ++..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 469999999999999999876 389999988766555443332 11 2457788888754 3445678999999
Q ss_pred cCccccc---CC--C--hHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPW---GA--N--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~---~~--~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.... ++ .+ . ...+++++.++|||||.|++..
T Consensus 158 d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 158 DLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 7544 43 11 0 2688999999999999999864
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.78 E-value=5.6e-09 Score=99.27 Aligned_cols=96 Identities=17% Similarity=0.066 Sum_probs=68.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCe-----EEEEeecCCCcccHHHHHhcCc--------cceeccccccCCC-CC--Cc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLW-----VMNVVPTLADKNTLGVIYERGL--------IGIYHDWCEAFST-YP--RT 415 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~-----~~~v~~~d~~~~~l~~~~~rg~--------~~~~~~~~~~~~~-~p--~s 415 (506)
...+|||+|||+|.++..|++.... ...|+++|.++.+++.|.++.- ...+...+.+... ++ ++
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 163 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP 163 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCCC
Confidence 3458999999999999988773110 1379999999999998877521 1112222222221 23 78
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
||+|++...+.+ ++.++.++|||||++++.-.
T Consensus 164 fD~I~~~~~~~~---------~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 164 YNAIHVGAAAPD---------TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEEEECSCBSS---------CCHHHHHTEEEEEEEEEEES
T ss_pred ccEEEECCchHH---------HHHHHHHHhcCCCEEEEEEe
Confidence 999999777763 23789999999999999754
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=104.22 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=70.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKMPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~~a~~~-----~~~~~~~~~d~~~lp~~~~sfDlV~~ 172 (506)
...+|||||||+|.++..++++ + ++..|+ | ..++.+++. ...+.+...|....|.+ .+|+|++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p-----~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~ 250 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-P-----EVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYIL 250 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-H-----HHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEE
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-H-----HHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEe
Confidence 3458999999999999999987 3 344444 2 233334332 23477888887665554 4799999
Q ss_pred cCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..++|+|.++. ..+|+++.+.|+|||.+++..
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 99999886544 688999999999999999965
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.78 E-value=7e-09 Score=103.92 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=68.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceeccccccC----CCCCCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEAF----STYPRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~~----~~~p~s~Dlv~~ 421 (506)
.++|||+|||+|.++..|++.. ...+|+++|.++.|++.|+++- + ...+...+.+. +..+++||+|++
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4689999999999999998752 2468999999999999998762 1 11122222222 223589999998
Q ss_pred ccccccccCcCCH--HHHHHHHhhhccCCcEEEEEe
Q 010592 422 HGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.. .+......+ ..++.++.|+|||||.+++..
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 543 221111112 579999999999999999975
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=90.02 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-CC----CCCeeE
Q 010592 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM-P-YA----SRAFDM 169 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l-p-~~----~~sfDl 169 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+.... ...+. .+.+...|.... + +. .++||+
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLW-RQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 458999999999999999874 4899999987665444333 33343 467777776432 1 11 168999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|++... ......+++++.++|+|||++++..
T Consensus 149 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 149 AVVDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 999653 2334789999999999999999864
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-08 Score=100.33 Aligned_cols=100 Identities=18% Similarity=0.090 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...++ .+.+.+.|+..+++++++||+|+++..
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n-~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN-ALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH-HHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 3458999999999999999875 589999998777555443 444555 578889999999988889999999765
Q ss_pred ccccCCC---h----HHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIPWGAN---D----GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~---~----~~~l~e~~rvLkPGG~li~~~ 204 (506)
+...... . ..+++++.++| ||.+++.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 4321111 1 46788899988 44444443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.6e-08 Score=93.95 Aligned_cols=109 Identities=15% Similarity=0.049 Sum_probs=78.9
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC----cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~----v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp 161 (506)
-++.+.++++ ++.+|||||||+|.++..++..+ |+++|+++..+..+..+ +...++ .+.+...|.....
T Consensus 11 RL~~i~~~v~----~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N-~~~~gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 11 RLQKVANYVP----KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKN-VSEHGLTSKIDVRLANGLSAF 85 (230)
T ss_dssp HHHHHHTTSC----TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHH-HHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHhCC----CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhhcc
Confidence 3456677773 34589999999999999999863 88999998766555443 444454 3777778876655
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+...||+|+.....-. -...++.+..+.|+++|+|+++.
T Consensus 86 ~~~~~~D~IviaGmGg~---lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 86 EEADNIDTITICGMGGR---LIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CGGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccccccCEEEEeCCchH---HHHHHHHHHHHHhCcCCEEEEEC
Confidence 55457999886553311 12578888899999999999985
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-08 Score=98.54 Aligned_cols=103 Identities=10% Similarity=0.103 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+.+|||||||+|.++..++++ .++++|+++.++..+...+..- ....+.+...|... ++...++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 3468999999999999999876 3899999886665444333221 12357778788654 3444678999999
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.... ++... ...+++++.++|+|||.|++...
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 6543 32221 25899999999999999999753
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=100.40 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=86.1
Q ss_pred ceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcC-cc--ceecccccc----CCCC-CCceeEEEEccc
Q 010592 354 RNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERG-LI--GIYHDWCEA----FSTY-PRTYDLIHAHGL 424 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg-~~--~~~~~~~~~----~~~~-p~s~Dlv~~~~~ 424 (506)
.+|||||||+|.++..|++ .+. ..|+.+|+++.|++.|+++- +. ..+...+++ +..+ +++||+|+++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~--~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQ--SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTT--CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred CEEEEEECCcCHHHHHHHHHCCC--cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence 3899999999999999988 322 37999999999999998863 21 111111222 1223 389999998643
Q ss_pred cccccC-cCCHHHHHHHHhhhccCCcEEEEEeC--h--hhH-HHHHHHHhcCCceEEEeecC--CCCCCCeEEEEEEecc
Q 010592 425 FSLYKD-KCNIEDILLEMDRILRPEGAIIIRDE--V--DEI-IKVKKIVGGMRWDTKMVDHE--DGPLVPEKILVAVKQY 496 (506)
Q Consensus 425 ~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~--~--~~~-~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~l~~~k~~ 496 (506)
...... ...-..++.++.|+|||||.|++.-. . ... ..++.+...+.-.....+.. .|......+|+|.|.-
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~p 248 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTE 248 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESSC
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECCC
Confidence 332111 11226799999999999999999532 1 112 22233333333222222211 2222346788888764
Q ss_pred c
Q 010592 497 W 497 (506)
Q Consensus 497 w 497 (506)
.
T Consensus 249 l 249 (317)
T 3gjy_A 249 F 249 (317)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=102.19 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+.+|||||||+|.++..++++ .++++|+++.++..+...+..- ....+.+...|... ++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 3469999999999999999876 3899999887665544433221 13457777777654 4445678999998
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.... ++.+. ...+++++.++|+|||.|++..
T Consensus 175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 6432 32211 2478999999999999999975
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=101.85 Aligned_cols=142 Identities=11% Similarity=-0.005 Sum_probs=88.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-------c-cceeccccccC----CCCCCceeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-------L-IGIYHDWCEAF----STYPRTYDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-------~-~~~~~~~~~~~----~~~p~s~Dlv~ 420 (506)
.++|||+|||+|.++..+++.. .+.+|+++|.++.|++.|+++- + ...+...+.+. +..+++||+|.
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4689999999999999998852 2368999999999999998752 1 01111222222 22358999999
Q ss_pred Eccccccc--cCcCC--HHHHHHHHhhhccCCcEEEEEeC------hhhHHHHHHHHhcCCceEEEeec-CCCCCCCeEE
Q 010592 421 AHGLFSLY--KDKCN--IEDILLEMDRILRPEGAIIIRDE------VDEIIKVKKIVGGMRWDTKMVDH-EDGPLVPEKI 489 (506)
Q Consensus 421 ~~~~~~~~--~~~~~--~~~~l~e~~RvLrPgG~~ii~d~------~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~ 489 (506)
++...... ..... ...++.++.|+|||||.+++... .+....+.+.+++.--.+..... .......+.+
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~~ 236 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGF 236 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEEE
Confidence 96544320 10011 36899999999999999999531 22345555555555333332111 0000124667
Q ss_pred EEEEec
Q 010592 490 LVAVKQ 495 (506)
Q Consensus 490 l~~~k~ 495 (506)
++|.|.
T Consensus 237 ~~as~~ 242 (314)
T 1uir_A 237 LLASDA 242 (314)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 888886
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-08 Score=94.41 Aligned_cols=109 Identities=15% Similarity=0.004 Sum_probs=78.2
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC----cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~----v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp 161 (506)
-++.+.++++ ++.+|||||||+|.++..|+..+ ++++|+++..+..+.. .+...++. +.+...|.....
T Consensus 11 RL~~i~~~v~----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~-N~~~~gl~~~I~v~~gD~l~~~ 85 (244)
T 3gnl_A 11 RLEKVASYIT----KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQK-QVRSSGLTEQIDVRKGNGLAVI 85 (244)
T ss_dssp HHHHHHTTCC----SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHhCC----CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEecchhhcc
Confidence 3456777773 34589999999999999999863 7899999876655443 44445553 677777776555
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+...||+|++....-. -...++.+..+.|+++|+|+++.
T Consensus 86 ~~~~~~D~IviagmGg~---lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 86 EKKDAIDTIVIAGMGGT---LIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CGGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred CccccccEEEEeCCchH---HHHHHHHHHHHHhCCCCEEEEEc
Confidence 44446999987543311 12568888999999999999985
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-08 Score=98.64 Aligned_cols=102 Identities=12% Similarity=0.028 Sum_probs=71.8
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH--H--cCCCeEEEEecccc-CCCCCCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL--E--RGVPAVIGVLGTIK-MPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~--~--~~~~~~~~~~d~~~-lp~~~~sfDlV~~~ 173 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+...+.. . ....+.+...|... ++...++||+|++.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 468999999999999999876 389999988766544443322 1 13457777777644 34446789999985
Q ss_pred CcccccCC-----ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 174 RCLIPWGA-----NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~-----~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. .++.. ....+++++.++|||||.|++...
T Consensus 171 ~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 171 ST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp C-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 32 22111 126899999999999999999753
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=101.86 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=67.9
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~~ 173 (506)
+.+|||||||+|..+..+++. .++++|+++.++..+...+... ....+.+...|... ++...++||+|++.
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 458999999999999999876 4888999876554333322110 12346777777644 33356789999986
Q ss_pred CcccccCCCh----HHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWGAND----GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~----~~~l~e~~rvLkPGG~li~~~ 204 (506)
.. .++.+.. ..+++++.++|+|||.|++..
T Consensus 189 ~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 189 SS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred CC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 53 3432221 578999999999999999975
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.74 E-value=9.7e-08 Score=88.95 Aligned_cols=96 Identities=7% Similarity=-0.028 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+..+ +...+..+.+...|...++ ++||+|+++..++.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIEN-LGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-TGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 4569999999999999999876 388999987655433322 2233446788888887765 48999999987755
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 179 WGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
..... ..+++++.++| ||.+++.
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEE
Confidence 44222 68899999998 6655544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=100.93 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=69.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc----CCCCCCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA----FSTYPRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~----~~~~p~s~Dlv~ 420 (506)
..++|||+|||+|.++..|++.. .+.+|+++|.++.|++.|+++- + ...+...+++ ++..+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 35789999999999999998863 2468999999999999998752 1 1112222232 223358999999
Q ss_pred EccccccccCc-CCHHHHHHHHhhhccCCcEEEEEe
Q 010592 421 AHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~-~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++......... .....++.++.|+|||||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 95433211100 012468999999999999999965
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-08 Score=100.81 Aligned_cols=116 Identities=10% Similarity=-0.015 Sum_probs=82.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C----CCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y----PRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~----p~s~Dlv~~~~ 423 (506)
..+|||+| |+|.++..++..+. ...|+++|.++.|++.|.++ |+. .+...+.++.. + +++||+|.++.
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEECC
Confidence 56899999 99999999887531 24899999999999998876 431 23333444433 3 35999999987
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcE-EEEEeCh--hhH---HHHHHHHh-cCCceEE
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGA-IIIRDEV--DEI---IKVKKIVG-GMRWDTK 475 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~-~ii~d~~--~~~---~~~~~~~~-~~~w~~~ 475 (506)
.|... ....+|.++.|+|||||. +++.-.. ... ..+++++. ..++.+.
T Consensus 250 p~~~~----~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 304 (373)
T 2qm3_A 250 PETLE----AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVIT 304 (373)
T ss_dssp CSSHH----HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEE
T ss_pred CCchH----HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchh
Confidence 66532 257899999999999994 3554322 233 67778777 7887654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-08 Score=96.88 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------cceeccccccC----CCCCCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCEAF----STYPRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------~~~~~~~~~~~----~~~p~s~Dlv~ 420 (506)
..++|||+|||+|.++..+++.. .+.+|+++|.++.+++.|+++-- ...+...+++. +..+++||+|.
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 35789999999999999998753 24689999999999999987621 01111122222 12358999999
Q ss_pred EccccccccCcCCH--HHHHHHHhhhccCCcEEEEEe
Q 010592 421 AHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d 455 (506)
++..... .+...+ ..++.++.|+|||||.+++..
T Consensus 157 ~d~~~~~-~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPI-GPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTT-TGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCC-CcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 9543321 111122 689999999999999999974
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.8e-08 Score=91.42 Aligned_cols=121 Identities=10% Similarity=0.098 Sum_probs=88.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc-cCCCCC-C-ceeEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE-AFSTYP-R-TYDLI 419 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~-~~~~~p-~-s~Dlv 419 (506)
.+..+ .+|||+|||+|.++.+|+..+ ....|+++|.++.+++.|.+. |+...+...+. .+..++ + .||+|
T Consensus 12 ~v~~g--~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~I 88 (225)
T 3kr9_A 12 FVSQG--AILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVI 88 (225)
T ss_dssp TSCTT--EEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred hCCCC--CEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEE
Confidence 45443 579999999999999998864 346899999999999988875 33221222222 233445 3 69988
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
...++- ...+..+|.+....|+|+|+||+.-. .-.+.+++.+...+|.+..
T Consensus 89 viaG~G-----g~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 89 TIAGMG-----GRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp EEEEEC-----HHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHHTTEEEEE
T ss_pred EEcCCC-----hHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHHCCCEEEE
Confidence 763321 12357799999999999999999766 4678899999999999664
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=95.18 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
..+.+|||||||+|.++..+... .++++||++.++.-... .+...+.+..+.+.|....+.+. +||+|++.-+++++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~-~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~L 181 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITP-FAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLL 181 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHH-HHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHh
Confidence 34569999999999999987743 69999998877644443 34455788888888887777655 89999999887776
Q ss_pred CCChHHHHHHHHHhcCCCeEEEE
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
.........++...|+++|.++-
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEE
T ss_pred hhhchhhHHHHHHHhcCCCEEEE
Confidence 43333344488889999987764
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-08 Score=100.87 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=71.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+...+... ....+.+...|... ++...++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 3469999999999999999876 4889999875554333222110 12356777777654 2323678999999
Q ss_pred cCcccccCCCh----HHHHHHHHHhcCCCeEEEEEcC
Q 010592 173 SRCLIPWGAND----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~~----~~~l~e~~rvLkPGG~li~~~p 205 (506)
.... ++.... ..+++++.++|+|||.+++...
T Consensus 158 d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 5432 322211 5899999999999999999854
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=99.93 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=57.5
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYA 163 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~-~~~~~~~~d~~~lp~~ 163 (506)
..++.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++..+..+.. ..+ .++.+...|+..++++
T Consensus 29 ~i~~~i~~~~~~~--~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~-~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIK--SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCL-YEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHHHHHHCCC--TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEC----CCSSCCC
T ss_pred HHHHHHHHhcCCC--CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEECchhhCCcc
Confidence 3455666666433 4459999999999999999987 48999998876654443333 233 3567777787777654
Q ss_pred CCCeeEEEEcCcc
Q 010592 164 SRAFDMAHCSRCL 176 (506)
Q Consensus 164 ~~sfDlV~~~~~l 176 (506)
+||+|+++..+
T Consensus 106 --~~D~Vv~n~py 116 (299)
T 2h1r_A 106 --KFDVCTANIPY 116 (299)
T ss_dssp --CCSEEEEECCG
T ss_pred --cCCEEEEcCCc
Confidence 79999997654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-08 Score=101.18 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=73.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp 161 (506)
...++.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++..+.... ...+ ..+.+...|+..++
T Consensus 14 ~~i~~~i~~~~~~~--~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~D~~~~~ 90 (285)
T 1zq9_A 14 PLIINSIIDKAALR--PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRV-QGTPVASKLQVLVGDVLKTD 90 (285)
T ss_dssp HHHHHHHHHHTCCC--TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhcCCC--CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEEcceeccc
Confidence 44556677777543 4459999999999999999886 4889999876664433322 2222 24678888888777
Q ss_pred CCCCCeeEEEEcCcccccCCCh-HHHH--------------HHH--HHhcCCCeEEE
Q 010592 162 YASRAFDMAHCSRCLIPWGAND-GRYM--------------IEV--DRVLRPGGYWV 201 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~-~~~l--------------~e~--~rvLkPGG~li 201 (506)
++ +||+|+++..+ ++.... ..++ +|+ .++|+|||.++
T Consensus 91 ~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 91 LP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 65 79999997654 332211 1222 333 36899999864
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=90.42 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=89.1
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCC-C-ceeE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-R-TYDL 418 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p-~-s~Dl 418 (506)
..+..+ .+|||+|||+|.++.+|+..+ ....|+++|.++.+++.|.+. |+...+...+.+ +...+ + .||+
T Consensus 17 ~~v~~g--~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~ 93 (230)
T 3lec_A 17 NYVPKG--ARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDT 93 (230)
T ss_dssp TTSCTT--EEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred HhCCCC--CEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCE
Confidence 345443 679999999999999999864 346899999999999998875 332212222222 22233 3 7999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
|...++-- ..+..+|.+..+.|+|+|+||+.-.. -.+.+++.+...+|.+..
T Consensus 94 IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlqp~~-~~~~lr~~L~~~Gf~i~~ 145 (230)
T 3lec_A 94 ITICGMGG-----RLIADILNNDIDKLQHVKTLVLQPNN-REDDLRKWLAANDFEIVA 145 (230)
T ss_dssp EEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHTTEEEEE
T ss_pred EEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEECCC-ChHHHHHHHHHCCCEEEE
Confidence 87533322 23567999999999999999998765 378899999999999764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-08 Score=102.58 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=71.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc----CCCCC-CceeEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA----FSTYP-RTYDLI 419 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~----~~~~p-~s~Dlv 419 (506)
..++|||+|||+|.++..|++.. .+.+|+++|.++.|+++|+++- + ...+...+.+ ++..+ ++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 45789999999999999998752 2468999999999999998752 1 0112222222 22233 799999
Q ss_pred EEccccccccCcCC--HHHHHHHHhhhccCCcEEEEE
Q 010592 420 HAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+++..-... .... ...++.++.|+|||||.|++.
T Consensus 199 i~d~~~p~~-~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIG-PAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTS-GGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccC-cchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 995432111 1111 368999999999999999996
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.7e-08 Score=97.96 Aligned_cols=144 Identities=11% Similarity=0.088 Sum_probs=94.8
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCC----eEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCC-CceeEE
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKL----WVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLI 419 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~----~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p-~s~Dlv 419 (506)
.....+|||+|||+|+|+..+++... ...+++++|.++.++.+|... |+. .+-.+.+ +...+ ..||+|
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~--~~i~~~D~l~~~~~~~fD~I 205 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLANLLVDPVDVV 205 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSCCCCCCEEEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC--ceEEECCCCCccccCCccEE
Confidence 34567899999999999888865311 126899999999999988774 431 1222233 32233 899999
Q ss_pred EEccccccccC--------------cCCHH-HHHHHHhhhccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeec
Q 010592 420 HAHGLFSLYKD--------------KCNIE-DILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 420 ~~~~~~~~~~~--------------~~~~~-~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.++.-|.+... ..+.. .++.++.+.|||||++++..+ ......+++.+..-+|...++..
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~l 285 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL 285 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeC
Confidence 99887754321 00121 589999999999999998762 23457788877776775433332
Q ss_pred C----CCCCCCeEEEEEEec
Q 010592 480 E----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 480 ~----~~~~~~~~~l~~~k~ 495 (506)
. .+......+++.+|.
T Consensus 286 p~~~F~~~~~~~~i~vl~k~ 305 (344)
T 2f8l_A 286 PETLFKSEQARKSILILEKA 305 (344)
T ss_dssp CGGGSCC-CCCEEEEEEEEC
T ss_pred ChhhccCCCCceEEEEEECC
Confidence 2 222245677777764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-08 Score=103.04 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=79.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccccee--ccccccCCCCCCceeEEEEcccc-
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIY--HDWCEAFSTYPRTYDLIHAHGLF- 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~--~~~~~~~~~~p~s~Dlv~~~~~~- 425 (506)
..+|||+|||+|+|+.+++..+. .|+++|.|+.|++.|.+. |+...+ .+..+-++.+++.||+|+++.-.
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 46899999999999999998763 499999999999988775 332111 11111122235459999985321
Q ss_pred ccccC-----cCCHHHHHHHHhhhccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEee
Q 010592 426 SLYKD-----KCNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 426 ~~~~~-----~~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~~ 478 (506)
..... ..+...++.++.|+|||||+|++..... ..+.++..+...+.++.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~ 355 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVHR 355 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 10000 0123468899999999999999754322 33555566666666655543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.2e-08 Score=102.53 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|..+..|++. .++++|+++..+.... +.+...+. .+.+...|...++ +++++||+|++.
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLK-DFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 4459999999999999998873 3889999886654433 33334455 5677777877766 555789999962
Q ss_pred -----CcccccCCCh----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 174 -----RCLIPWGAND----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 -----~~l~~~~~~~----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
....+-.++. ..+|.++.++|||||+|++++...
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1111112221 468999999999999999986543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=98.21 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=81.2
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC----C-CceeEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY----P-RTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~----p-~s~Dlv 419 (506)
......+|||+|||+|+++..|++...- ..|+++|.++.++..+.++ |+. +...+.++..+ + ++||+|
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 319 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRI 319 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEE
Confidence 3344568999999999999999874311 5899999999999988776 431 22233444332 3 789999
Q ss_pred EEcc---ccccccCcCCH----------------HHHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhcC-Cce
Q 010592 420 HAHG---LFSLYKDKCNI----------------EDILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGGM-RWD 473 (506)
Q Consensus 420 ~~~~---~~~~~~~~~~~----------------~~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~~-~w~ 473 (506)
.++. .+....+..++ ..+|.++.++|||||++++.+ ..+..+.+..++... .|+
T Consensus 320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~ 397 (429)
T 1sqg_A 320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAE 397 (429)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCE
T ss_pred EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCE
Confidence 9732 11111122222 368999999999999999976 223445666666543 344
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.3e-08 Score=99.35 Aligned_cols=99 Identities=13% Similarity=-0.060 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc-CCC-CCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-MPY-ASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~-lp~-~~~sfDlV~~~~ 174 (506)
++.+|||+| |+|.++..++.. .++++|+++.++..+.. .+...++ ++.+...|+.. +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEK-AANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHH-HHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 356999999 999999988764 48899998877754443 3334455 67788888877 764 457899999987
Q ss_pred cccccCCChHHHHHHHHHhcCCCe-EEEEEc
Q 010592 175 CLIPWGANDGRYMIEVDRVLRPGG-YWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~~~~l~e~~rvLkPGG-~li~~~ 204 (506)
.+... ....++.++.++||||| .++++.
T Consensus 250 p~~~~--~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 250 PETLE--AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CSSHH--HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCchH--HHHHHHHHHHHHcccCCeEEEEEE
Confidence 65332 24789999999999999 446654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.3e-08 Score=94.63 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=83.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC--CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP--RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p--~s~Dlv~~~~~~~ 426 (506)
..+|||||||+|.|+..++..+. ..|+++|.++..++.+.+. |+-..+...+.+.-.++ ..||.|..+...
T Consensus 126 g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~- 202 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV- 202 (278)
T ss_dssp TCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred CCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC-
Confidence 45799999999999988887653 4799999999999877664 34232322344444443 889999874322
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeC-------hhhHHHHHHHHhcCCceEEEee
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE-------VDEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-------~~~~~~~~~~~~~~~w~~~~~~ 478 (506)
.....|.+..++|||||++++-+. ....+.++++++..++++....
T Consensus 203 ------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~ 255 (278)
T 3k6r_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEE
Confidence 223477788899999999988432 1246788889999999876543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-08 Score=100.30 Aligned_cols=123 Identities=14% Similarity=0.060 Sum_probs=79.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC-------CCceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY-------PRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~-------p~s~Dlv 419 (506)
....+|||+|||+|+++..|++.-.-...|+++|.++.+++.+.++ |+. .+...+.++..+ +++||+|
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEE
Confidence 3456899999999999999886211124799999999999988775 331 222222332221 5789999
Q ss_pred EEcccccccc---------------CcCCHHHHHHHHhhhccCCcEEEEEeC----hhhHHHHHHHHhc-CCceE
Q 010592 420 HAHGLFSLYK---------------DKCNIEDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGG-MRWDT 474 (506)
Q Consensus 420 ~~~~~~~~~~---------------~~~~~~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~-~~w~~ 474 (506)
.++.-++... .......+|.++.++|||||.+++..- .+..+.++.+++. -.++.
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~ 235 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVEL 235 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEE
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEE
Confidence 9863332110 012346799999999999999999642 2344556666643 34553
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-08 Score=103.17 Aligned_cols=91 Identities=11% Similarity=0.123 Sum_probs=69.1
Q ss_pred CCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
..+|||||||+|.++..++++ + ++++|+ + .+++.+.+. ..+.+...|... +++ +||+|++..++++
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P-----QVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHD 263 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H-----HHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H-----HHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccC
Confidence 458999999999999999876 3 555666 3 333333322 337777777766 665 4999999999988
Q ss_pred cCCChH--HHHHHHHHhcCC---CeEEEEEc
Q 010592 179 WGANDG--RYMIEVDRVLRP---GGYWVLSG 204 (506)
Q Consensus 179 ~~~~~~--~~l~e~~rvLkP---GG~li~~~ 204 (506)
|.+ +. .+|+++.++||| ||++++..
T Consensus 264 ~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 264 WND-EQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp SCH-HHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred CCH-HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 744 44 999999999999 99999865
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-07 Score=91.61 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=88.5
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCC-C-ceeE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-R-TYDL 418 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p-~-s~Dl 418 (506)
..+..+ .+|||+|||+|.++.+|+..+ ....|+++|.++.+++.|.+. |+...+...+.+ +..++ + .||+
T Consensus 17 ~~v~~g--~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~ 93 (244)
T 3gnl_A 17 SYITKN--ERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDT 93 (244)
T ss_dssp TTCCSS--EEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred HhCCCC--CEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccE
Confidence 345544 679999999999999999864 346899999999999999876 442212222222 32333 4 5999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
|...++-- ..+..+|.+..+.|+|+|+||+.-.. -.+.+++.+...+|.+.
T Consensus 94 IviagmGg-----~lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 94 IVIAGMGG-----TLIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp EEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHHTEEEE
T ss_pred EEEeCCch-----HHHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHHCCCEEE
Confidence 87633221 23567999999999999999998754 47789999999999964
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-08 Score=102.76 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIK-MPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~----~~~~~~~~~~~d~~~-lp~~~~sfDlV~~~ 173 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+...+.. -....+.+...|... ++..+++||+|++.
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 468999999999999999876 388999987655433332211 002357777777644 33345789999986
Q ss_pred CcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 174 RCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. .++... ...+++++.++|||||.+++...
T Consensus 197 ~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 197 SS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp CC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred Cc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 43 232211 16899999999999999999753
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.1e-08 Score=95.01 Aligned_cols=111 Identities=10% Similarity=0.091 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEec
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLG 156 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d 156 (506)
....++..+.... .+.+|||||||+|..+..+++. .++++|+++..+..+... ..+.+. .+.+...|
T Consensus 57 ~~~~~l~~l~~~~-----~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~g~~~~i~~~~gd 130 (237)
T 3c3y_A 57 LAGQLMSFVLKLV-----NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPF-IRKAGVEHKINFIESD 130 (237)
T ss_dssp HHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESC
T ss_pred HHHHHHHHHHHhh-----CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcC
Confidence 3344555554443 2458999999999999998764 489999988666544433 333444 36677777
Q ss_pred cccC-C-C-----CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 157 TIKM-P-Y-----ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 157 ~~~l-p-~-----~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.... + + +.++||+|++... ..+...+++++.++|||||++++..
T Consensus 131 a~~~l~~l~~~~~~~~~fD~I~~d~~----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 131 AMLALDNLLQGQESEGSYDFGFVDAD----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp HHHHHHHHHHSTTCTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHHhccCCCCCcCEEEECCc----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 6432 2 1 2578999998642 2334789999999999999999864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-09 Score=104.12 Aligned_cols=103 Identities=10% Similarity=0.101 Sum_probs=68.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCC-CceeEEEEc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p-~s~Dlv~~~ 422 (506)
+......+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++. +...++..+.++..++ .+||+|.++
T Consensus 24 ~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~n 100 (285)
T 1zq9_A 24 AALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVAN 100 (285)
T ss_dssp TCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEE
T ss_pred cCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEEe
Confidence 334456689999999999999999875 48999999999999988762 2123333445655545 689999996
Q ss_pred ccccccc--------CcCCHHHHH----HHH--hhhccCCcEEEE
Q 010592 423 GLFSLYK--------DKCNIEDIL----LEM--DRILRPEGAIII 453 (506)
Q Consensus 423 ~~~~~~~--------~~~~~~~~l----~e~--~RvLrPgG~~ii 453 (506)
..+.... +...+..++ +|+ .|+|||||.++.
T Consensus 101 lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~ 145 (285)
T 1zq9_A 101 LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC 145 (285)
T ss_dssp CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence 4443110 111111111 454 379999998753
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-08 Score=95.95 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=80.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
+.+.+.+.+.+ +...+|||||||.|-++..++.. .+.++|+++.++.-.. +++...+++..+.+.|...-+
T Consensus 120 D~fY~~i~~~i----~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~-~~l~~~g~~~~~~v~D~~~~~ 194 (281)
T 3lcv_B 120 DEFYRELFRHL----PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD-EALTRLNVPHRTNVADLLEDR 194 (281)
T ss_dssp HHHHHHHGGGS----CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH-HHHHHTTCCEEEEECCTTTSC
T ss_pred HHHHHHHHhcc----CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeeecccC
Confidence 44445555555 22459999999999999888665 5899999887664443 334445788888777765444
Q ss_pred CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010592 162 YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
+.+.||+|++.-+++++.+.. ...+ ++...|+|+|.++-
T Consensus 195 -p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 195 -LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp -CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred -CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 467899999999987764433 3455 99999999998874
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.9e-08 Score=90.70 Aligned_cols=108 Identities=15% Similarity=0.040 Sum_probs=75.7
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc-cCC
Q 010592 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-KMP 161 (506)
Q Consensus 89 ~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~-~lp 161 (506)
++.+.++++ ++.+|||||||+|.++..++.. .|+++|+++..+..+. +.+...++. +.+...|.. .++
T Consensus 6 L~~l~~~v~----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~i~~~~~d~l~~l~ 80 (225)
T 3kr9_A 6 LELVASFVS----QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV-KNVEAHGLKEKIQVRLANGLAAFE 80 (225)
T ss_dssp HHHHHTTSC----TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHhCC----CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEECchhhhcc
Confidence 455666663 3458999999999999999986 3889999987665444 444455553 667777763 443
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ...||+|+.....-. -...++.+....|+|+|+|+++..
T Consensus 81 ~-~~~~D~IviaG~Gg~---~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 81 E-TDQVSVITIAGMGGR---LIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp G-GGCCCEEEEEEECHH---HHHHHHHHTGGGCTTCCEEEEEES
T ss_pred c-CcCCCEEEEcCCChH---HHHHHHHHHHHHhCCCCEEEEECC
Confidence 2 226999987553211 125788999999999999999743
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-08 Score=102.72 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=83.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-cceeccccccCCCC-------CCceeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTY-------PRTYDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-~~~~~~~~~~~~~~-------p~s~Dlv~ 420 (506)
..+|||+|||+|+|+..++..+ ...|+++|.++.+++.|.+. |+ ...+...+.++..+ +.+||+|+
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999999999875 35899999999999988765 33 21233333332221 36899999
Q ss_pred Ecccccc-----cc-CcCCHHHHHHHHhhhccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEe
Q 010592 421 AHGLFSL-----YK-DKCNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 421 ~~~~~~~-----~~-~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~ 477 (506)
++.-... .. .......++.++.++|+|||.+++..... ..+.+++.+...+.+....
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 9532210 00 11345689999999999999999965432 3445555666666554443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.3e-08 Score=100.38 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEecccc-CCC---CCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK-MPY---ASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~-lp~---~~~sfDlV~ 171 (506)
.+.+|||+|||+|.++..++.. .|+++|+++.++..+.. .+...++ .+.+...|+.. ++. ...+||+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~-N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLA-HFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHH-HHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 3458999999999999999985 48999999987765554 4444554 57788888754 221 245899999
Q ss_pred EcCccc----ccCCCh----HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 172 CSRCLI----PWGAND----GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~~~~l~----~~~~~~----~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..... ....+. ..++.++.++|+|||+++++..+.
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 864332 111222 346788899999999999987654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-08 Score=101.79 Aligned_cols=123 Identities=16% Similarity=0.112 Sum_probs=82.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC-------CCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY-------PRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~-------p~s~Dlv~ 420 (506)
...+|||+|||+|+++..++.. ..+|+++|.++.+++.|.+. |+.. +...+.++..+ +.+||+|+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii 284 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVV 284 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEE
Confidence 4568999999999999999885 47899999999999988775 3311 22223332211 46899999
Q ss_pred EccccccccCc------CCHHHHHHHHhhhccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEee
Q 010592 421 AHGLFSLYKDK------CNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 421 ~~~~~~~~~~~------~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~~ 478 (506)
++.-....... .....++.++.++|+|||.+++..... ..+.+++.+...+.+..+.+
T Consensus 285 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~ 354 (382)
T 1wxx_A 285 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 354 (382)
T ss_dssp ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 84321100000 123568999999999999999975432 34555566677766555443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=97.72 Aligned_cols=102 Identities=15% Similarity=0.013 Sum_probs=72.2
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC-CCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-PYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l-p~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++..++..+ |+++|+|+.++..+..+ +..+++...+.+.|+... +...+.||+|++.......
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n-~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQA-ALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 5699999999999999998864 88999998777555443 444566656667776543 2223349999996532111
Q ss_pred C--------CChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 180 G--------ANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 180 ~--------~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. .+...++..+.++|||||+|++++.
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 1124788999999999999997654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.8e-09 Score=113.68 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=71.9
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc---cC--CCCCCceeEEEEccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE---AF--STYPRTYDLIHAHGL 424 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~---~~--~~~p~s~Dlv~~~~~ 424 (506)
.+|||||||.|.++..|++.| .+|+++|.++.++++|+.+ |.. .+...+. ++ +..+++||+|.|..+
T Consensus 68 ~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 68 LNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 479999999999999999987 6899999999999988764 321 2222233 33 123589999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|..+...+ ..+.++.+.|+++|..++-.
T Consensus 144 ~ehv~~~~~~-~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 144 FHHIVHLHGI-DEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHSSEEEEE
T ss_pred hhcCCCHHHH-HHHHHHHHHhccccceeeEE
Confidence 9977643332 23556888899999877743
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.65 E-value=8.3e-08 Score=100.31 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcC-
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSR- 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~- 174 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...+..+.+...|...++ +++++||+|++..
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~-~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 324 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 324 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCC
Confidence 4559999999999999999874 4899999998775444 344445667778888887765 5667899999621
Q ss_pred -----cccccCCCh----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 175 -----CLIPWGAND----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 -----~l~~~~~~~----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.+ .++. ..++.++.++|||||++++++...
T Consensus 325 csg~g~~~~-~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 325 CSATGVIRR-HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCGGGTTT-CTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCcccccCC-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1111 1221 377999999999999999987433
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-07 Score=93.41 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=85.3
Q ss_pred eEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcC
Q 010592 71 VFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERG 147 (506)
Q Consensus 71 ~~~f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~ 147 (506)
.|.+.-...+|..+...--..+.+.+ .++.+|||+|||+|.++..++.+ .|+++|+++..+ +.+.+.+..++
T Consensus 98 ~~~~D~~k~~f~~~~~~er~ri~~~~----~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~-~~~~~N~~~N~ 172 (278)
T 3k6r_A 98 KYKLDVAKIMFSPANVKERVRMAKVA----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNK 172 (278)
T ss_dssp EEEEETTTSCCCGGGHHHHHHHHHHC----CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTT
T ss_pred EEEEeccceEEcCCcHHHHHHHHHhc----CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHH-HHHHHHHHHcC
Confidence 44444444555555544445677776 34569999999999999988865 388999988655 34444555556
Q ss_pred CC--eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 148 VP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 148 ~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+. +.+...|...++. .+.||.|+++.. .....++..+.++|||||.+.+.
T Consensus 173 v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 173 VEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp CTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCCcEEEEeCcHHHhcc-ccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEEE
Confidence 54 5666777776653 568999998642 22356889999999999998764
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=100.26 Aligned_cols=125 Identities=11% Similarity=0.131 Sum_probs=81.7
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CC-CceeEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YP-RTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p-~s~Dlv 419 (506)
......+|||+|||+|+.+..|++.-.-...|+++|.++.++..+.++ |+. .+...+.++.. ++ ++||+|
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~fD~V 334 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVADKV 334 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCEEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCCCEE
Confidence 334456899999999999999987311114799999999999988776 441 22222334333 34 789999
Q ss_pred EEcc---ccccccCcCCH----------------HHHHHHHhhhccCCcEEEEEeC----hhhHHHHHHHHhcC-CceE
Q 010592 420 HAHG---LFSLYKDKCNI----------------EDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 420 ~~~~---~~~~~~~~~~~----------------~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~-~w~~ 474 (506)
.++. .+..+.+..++ ..+|.++.++|||||.+++.+- .+..+.+..+++.. .|+.
T Consensus 335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~ 413 (450)
T 2yxl_A 335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKL 413 (450)
T ss_dssp EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEE
T ss_pred EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 9631 11111122222 4689999999999999998653 22345667776664 5653
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-08 Score=99.40 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=70.0
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHH-----------cCCCeEEEEecccc-CCCCCCCe
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE-----------RGVPAVIGVLGTIK-MPYASRAF 167 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~-----------~~~~~~~~~~d~~~-lp~~~~sf 167 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+...+ .. ....+.+...|... ++. +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 458999999999999999876 4889999886665444333 10 12346777777643 222 5789
Q ss_pred eEEEEcCcccccCC--C--hHHHHHHHHHhcCCCeEEEEEc
Q 010592 168 DMAHCSRCLIPWGA--N--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 168 DlV~~~~~l~~~~~--~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+|++.... ++.. . ...+++++.++|+|||.+++..
T Consensus 154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999986542 3221 1 2678999999999999999974
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=8.6e-08 Score=98.34 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=82.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCceeEEEEc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYDLIHAH 422 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~Dlv~~~ 422 (506)
+....+|||+|||+|+++..++..+.+ ..|+++|.++.|++.|.++ |+...+...+.+ ++..+++||+|.++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN 293 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence 445678999999999999999887532 2799999999999988875 331222222333 33334899999997
Q ss_pred ccccccc-CcCCH----HHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010592 423 GLFSLYK-DKCNI----EDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 423 ~~~~~~~-~~~~~----~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
.-|..-. ....+ ..++.++.|+| +|+.++|.... +.+++.+.+.+|++..
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~---~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEK---KAIEEAIAENGFEIIH 348 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCH---HHHHHHHHHTTEEEEE
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCH---HHHHHHHHHcCCEEEE
Confidence 6665321 11122 56889999999 55555555543 4566788899999653
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.9e-08 Score=99.78 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=87.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--CceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--~s~Dlv~~~~~~~~~~~ 430 (506)
..+|||+|||+|.|+.+++++-....+++++|.++.+++.| .+ + .. .+.++..++ ..||+|.++--|.....
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~~-~-~~---~~~D~~~~~~~~~fD~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-PW-A-EG---ILADFLLWEPGEAFDLILGNPPYGIVGE 113 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-TT-E-EE---EESCGGGCCCSSCEEEEEECCCCCCBSC
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-CC-C-cE---EeCChhhcCccCCCCEEEECcCccCccc
Confidence 44899999999999999986310125899999999999877 21 1 11 123333332 79999999644432111
Q ss_pred -------------------------cCC-HHHHHHHHhhhccCCcEEEEEeChh-----hHHHHHHHHhcCCceEEEeec
Q 010592 431 -------------------------KCN-IEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 431 -------------------------~~~-~~~~l~e~~RvLrPgG~~ii~d~~~-----~~~~~~~~~~~~~w~~~~~~~ 479 (506)
..+ ...+|..+.++|||||.+++.-+.. ....+++.+...++ ..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~-~~i~~l 192 (421)
T 2ih2_A 114 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK-TSVYYL 192 (421)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE-EEEEEE
T ss_pred ccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC-eEEEEC
Confidence 001 1256889999999999998865443 45778888776676 333221
Q ss_pred C---CCCCCCeEEEEEEec
Q 010592 480 E---DGPLVPEKILVAVKQ 495 (506)
Q Consensus 480 ~---~~~~~~~~~l~~~k~ 495 (506)
. .+....-.+++.+|.
T Consensus 193 ~~~F~~~~~~~~il~~~k~ 211 (421)
T 2ih2_A 193 GEVFPQKKVSAVVIRFQKS 211 (421)
T ss_dssp ESCSTTCCCCEEEEEEESS
T ss_pred CCCCCCCCccEEEEEEEeC
Confidence 1 333345677777773
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-08 Score=96.55 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=67.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHH----HcCCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~----~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+...+.. -....+.+...|..... ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 3469999999999999988875 478888877544332211110 11234677777776554 7899999862
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++..+++++.++|||||.|++..
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 245569999999999999999864
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.8e-08 Score=106.47 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=76.4
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC---eEEEEecccc-CCCCCCCeeEEEEcCc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIK-MPYASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~---~~~~~~d~~~-lp~~~~sfDlV~~~~~ 175 (506)
+.+|||+|||+|.++..++.. .|+++|+|+.++..+..+. ..+++. +.+.+.|... ++...++||+|++...
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~-~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNL-RLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 458999999999999998876 3899999987775555443 344543 7788888755 4445678999999653
Q ss_pred cc----------ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 176 LI----------PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 176 l~----------~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. ....+...++.++.++|+|||+|+++....
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 21 111122567999999999999999987654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=94.96 Aligned_cols=94 Identities=7% Similarity=0.001 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+.+|||+|||+|.++.. +.. .++++|+++..+..+. +.+...++ .+.+...|..... ++||+|++....
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~-~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~- 268 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLK-KNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK- 268 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT-
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH-
Confidence 345999999999999999 764 4899999987665444 34444454 4788888887765 789999996421
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
....++.++.++|+|||.+++...
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 124789999999999999998753
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=96.81 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc-
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK- 159 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~- 159 (506)
..+.+++.+.+.+... .+.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...++ ++.+...|...
T Consensus 270 ~~e~l~~~~~~~l~~~--~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~f~~~d~~~~ 346 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQ--PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ-NARLNGLQNVTFYHENLEED 346 (433)
T ss_dssp HHHHHHHHHHHHHTCC--TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCTTSC
T ss_pred HHHHHHHHHHHhhcCC--CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEECCHHHH
Confidence 3566777777777433 3458999999999999999986 58999999877755443 3444454 57788888765
Q ss_pred ---CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 160 ---MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 ---lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++++++||+|++...... ...+++.+. .++|++.++++..+.
T Consensus 347 l~~~~~~~~~fD~Vv~dPPr~g----~~~~~~~l~-~~~p~~ivyvsc~p~ 392 (433)
T 1uwv_A 347 VTKQPWAKNGFDKVLLDPARAG----AAGVMQQII-KLEPIRIVYVSCNPA 392 (433)
T ss_dssp CSSSGGGTTCCSEEEECCCTTC----CHHHHHHHH-HHCCSEEEEEESCHH
T ss_pred hhhhhhhcCCCCEEEECCCCcc----HHHHHHHHH-hcCCCeEEEEECChH
Confidence 4456778999999653321 134555554 479999999986543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.4e-08 Score=99.26 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=81.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eeccccccCCC----C---CCceeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFST----Y---PRTYDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~~~~~----~---p~s~Dlv~ 420 (506)
..+|||+|||+|.|+..++..+. ..|+++|.++.|++.|.+. |+.. .+...+.++.. . ..+||+|.
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 46899999999999999998652 4899999999999988775 3321 23333343221 1 25899999
Q ss_pred Eccccc-----cccCc-CCHHHHHHHHhhhccCCcEEEEEeChh------hHHHHHHHHhcCCce
Q 010592 421 AHGLFS-----LYKDK-CNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWD 473 (506)
Q Consensus 421 ~~~~~~-----~~~~~-~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~ 473 (506)
++.-.. ...+. .....++.++.++|+|||.|++..... ..+.++..+...+++
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 853321 11111 123357788899999999999975432 445566677888887
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.9e-08 Score=102.17 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCC-CCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY-ASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~-~~~sfDlV~~~~ 174 (506)
++.+|||+|||+|..+..|++. .|+++|+++.++.....+ +...++ .+.+...|...++. .+++||+|++.-
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n-~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHAN-ISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH-HHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 4569999999999999998874 389999988766544433 333454 46677777766653 457899999721
Q ss_pred ------cccc-------cCCC--------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 175 ------CLIP-------WGAN--------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ------~l~~-------~~~~--------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.+ |..+ ...+|.++.++|||||+|++++...
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 1111 1100 1368999999999999999986433
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-08 Score=103.27 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-YASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp-~~~~sfDlV~~~~~ 175 (506)
++.+|||+|||+|..+..|++. .|+++|+++.++..+. +.+...++.+.+...|...++ +..++||+|++.-.
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~-~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~P 179 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL-ENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCC
Confidence 4569999999999999999854 3899999887664443 334444556677777776665 34678999995211
Q ss_pred ----c-cccCCCh----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 176 ----L-IPWGAND----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 176 ----l-~~~~~~~----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
- ..-.++. ..+|.++.++|||||+|++++...
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 0 0101111 568999999999999999986443
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=6.3e-08 Score=101.72 Aligned_cols=124 Identities=12% Similarity=0.173 Sum_probs=80.7
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEEE
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIHA 421 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~Dlv~~ 421 (506)
.....+|||||||+|+.+.+|++.-.-...|+++|.++.+++.+.++ |+. +...+.+ ++ ..+++||+|.+
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEEE
Confidence 34456899999999999999986311124799999999999988775 432 2222333 22 13589999996
Q ss_pred c------cccccccC------cCCH-------HHHHHHHhhhccCCcEEEEEeC----hhhHHHHHHHHhcC-CceEE
Q 010592 422 H------GLFSLYKD------KCNI-------EDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGM-RWDTK 475 (506)
Q Consensus 422 ~------~~~~~~~~------~~~~-------~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~-~w~~~ 475 (506)
+ ++|..-.+ ..++ ..+|.++.++|||||+|+++.- .+-.+.++.+++.. .|++.
T Consensus 177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~ 254 (464)
T 3m6w_A 177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLE 254 (464)
T ss_dssp ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEE
T ss_pred CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEE
Confidence 2 22221110 0111 5699999999999999999542 23455666676665 46543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=97.95 Aligned_cols=105 Identities=10% Similarity=-0.029 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccCCC----CCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKMPY----ASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~lp~----~~~sfDlV~ 171 (506)
++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...++ ++.+...|+..... ..++||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 3458999999999999999986 3899999987665444 34444565 57788888754321 146899999
Q ss_pred EcCcccc--------cCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 172 CSRCLIP--------WGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~~~~l~~--------~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+...... .......++.++.++|+|||+++++..+.
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9643211 11223678999999999999999987554
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.4e-08 Score=101.93 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=77.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CCCceeEEEEc-
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YPRTYDLIHAH- 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p~s~Dlv~~~- 422 (506)
...+|||||||+|+.+.+|++.-.-...|+++|.++.+++.+.++ |+. .+...+.+... .+++||+|.++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence 456899999999999999887311124799999999999988775 431 22222344333 35799999983
Q ss_pred -----cccccccCc---CC----------HHHHHHHHhhhccCCcEEEEEeC----hhhHHHHHHHHhcCC
Q 010592 423 -----GLFSLYKDK---CN----------IEDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGMR 471 (506)
Q Consensus 423 -----~~~~~~~~~---~~----------~~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~~ 471 (506)
++|..-.+. -. -..+|.++.|+|||||+|+++.- .+-.+.++.+++...
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 223211100 00 13689999999999999999642 223345556555543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-08 Score=98.21 Aligned_cols=112 Identities=12% Similarity=0.031 Sum_probs=77.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEEEccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~ 428 (506)
..+|||+|||+|.|+.. +.. ...|+++|.++.+++.|.+. |+...+...+.+...+.++||+|+++.-.
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~--- 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK--- 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT---
T ss_pred CCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH---
Confidence 46899999999999999 763 36899999999999988775 33222333344444344899999984211
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcC-CceEE
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM-RWDTK 475 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~-~w~~~ 475 (506)
....++.++.++|+|||.+++.+.....+.+.+.+... ++++.
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~~~~~~~i~ 312 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEKKCDCEVL 312 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHHHHSEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEeecCchHHHHHHHHhcCCcEE
Confidence 12368999999999999999965433234444444444 56543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.7e-08 Score=101.41 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCC----CCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPY----ASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~----~~~sfDlV~~~~ 174 (506)
.+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.. +.+...|+..... ..++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 3458999999999999999875 58999999876654443 34444544 6777777754321 256899999964
Q ss_pred cccccC--------CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 175 CLIPWG--------ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l~~~~--------~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
...... .....++.++.++|+|||+|++++...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 321111 112568899999999999999987544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.5e-08 Score=98.78 Aligned_cols=125 Identities=10% Similarity=0.004 Sum_probs=84.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C---CCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y---PRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~---p~s~Dlv~ 420 (506)
...+|||+|||+|+|+..++..+ ...|+++|.++.+++.|.+. |+...+...+.++.. + +.+||+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 34689999999999999999875 24899999999999988765 322122222333221 1 46899999
Q ss_pred Ecccccccc------CcCCHHHHHHHHhhhccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEee
Q 010592 421 AHGLFSLYK------DKCNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 421 ~~~~~~~~~------~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~~ 478 (506)
++.-..... .......++.++.++|||||.+++..... ..+.+.+.+...+.+..+..
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 364 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 364 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 953221000 00234578999999999999999875432 34455566777777766655
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.54 E-value=6.9e-08 Score=99.81 Aligned_cols=105 Identities=15% Similarity=0.015 Sum_probs=75.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC----CCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY----ASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~----~~~sfDlV~~ 172 (506)
++.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...++ .+.+...|...+.. ..++||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~-n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 3459999999999999999976 48999999877654443 3444555 47788888754421 2568999999
Q ss_pred cCcccccC--------CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 173 SRCLIPWG--------ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~~~--------~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
........ .+...++.++.++|+|||++++++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 64331111 223578899999999999999886544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-07 Score=96.67 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~ 162 (506)
.+.+.+.+.+ + ..+.+|||+|||+|.++..|++. .|+++|+++.++..+..+ +...++.+.+...|+..+..
T Consensus 278 ~e~l~~~~~~-~----~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n-~~~ngl~v~~~~~d~~~~~~ 351 (425)
T 2jjq_A 278 AVNLVRKVSE-L----VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRN-VEINNVDAEFEVASDREVSV 351 (425)
T ss_dssp HHHHHHHHHH-H----CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCEEEEECCTTTCCC
T ss_pred HHHHHHHhhc-c----CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChHHcCc
Confidence 3455555555 2 23458999999999999999987 489999998777555443 44445557788888877643
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. +||+|++.... ......+++.+. .|+|||.++++..+.
T Consensus 352 -~-~fD~Vv~dPPr---~g~~~~~~~~l~-~l~p~givyvsc~p~ 390 (425)
T 2jjq_A 352 -K-GFDTVIVDPPR---AGLHPRLVKRLN-REKPGVIVYVSCNPE 390 (425)
T ss_dssp -T-TCSEEEECCCT---TCSCHHHHHHHH-HHCCSEEEEEESCHH
T ss_pred -c-CCCEEEEcCCc---cchHHHHHHHHH-hcCCCcEEEEECChH
Confidence 2 89999996532 111234555554 599999999997543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=95.59 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~ 172 (506)
.+.+|||+|||+|.++..+++. .+.++|+++..+..+..+... .+....+...|... +.+.+.||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~-~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-QRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-HTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh-CCCCceEEECCCCC-ccccCCccEEEE
Confidence 4468999999999998877643 378899988666554444332 35567777777654 334578999999
Q ss_pred cCcccccCCCh-----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 173 SRCLIPWGAND-----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~~~~~~-----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..+.++..+. ..++.++.+.|+|||++++..|..
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 97764432111 158999999999999999987644
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-07 Score=96.79 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=80.3
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh-----------------CCcEEEecCccchHHHHHHHHHHcCC-
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS-----------------RNVIAMSFAPRDSHEAQVQFALERGV- 148 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----------------~~v~~vdis~~di~~~~~~~a~~~~~- 148 (506)
..++.+.+.+.. ..+.+|||.|||+|.++..+++ ..+.++|+++..+..+..+... .+.
T Consensus 158 ~v~~~mv~~l~~--~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l-~g~~ 234 (445)
T 2okc_A 158 PLIQAMVDCINP--QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGIG 234 (445)
T ss_dssp HHHHHHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHhCC--CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH-hCCC
Confidence 344556666532 3345899999999998877654 3589999988666555444433 344
Q ss_pred --CeEEEEeccccCCCCCCCeeEEEEcCcccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 149 --PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 149 --~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...+..+|+...+.. .+||+|+++..+.+.... ...+++.+.+.|||||++++..|.
T Consensus 235 ~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 235 TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 456677777665543 389999998766442111 137899999999999999998763
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-07 Score=95.85 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=78.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
....+.+.+.+.. ..+.+|||+|||+|.++..++++ .++++|+++.++..+ ..+.+...|....
T Consensus 25 ~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~ 93 (421)
T 2ih2_A 25 PEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLW 93 (421)
T ss_dssp HHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGC
T ss_pred HHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhc
Confidence 4455667777743 23449999999999999999863 589999998765322 3467777787665
Q ss_pred CCCCCCeeEEEEcCcccccCC---------Ch-------------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 PYASRAFDMAHCSRCLIPWGA---------ND-------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~---------~~-------------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +.++||+|+++..+..... +. ..+++.+.++|+|||++++..|..
T Consensus 94 ~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 94 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred C-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 4 3468999999754432111 11 256889999999999999987653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=98.82 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP-YASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlV~~~~ 174 (506)
++.+|||+|||+|..+..|++. .|+++|+++..+..... .+...++. +.+...|...++ ..+++||+|++..
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~-n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSE-NIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHH-HHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 4569999999999999888864 38999998876644443 33344544 566666766554 2357899999742
Q ss_pred cc---cccCCCh------------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 175 CL---IPWGAND------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l---~~~~~~~------------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. -.+..++ ..+|.++.++|||||+|++++...
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 10 0011111 267999999999999999986443
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-07 Score=98.78 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=80.9
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEEE
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIHA 421 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~Dlv~~ 421 (506)
.....+|||||||+|+.+.+|++.-.-...|+++|.++.+++.+.++ |+. .+...+.+ ++ .++++||+|.+
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~Il~ 181 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFFDRIVV 181 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccCCEEEE
Confidence 34456899999999999988876310114799999999999988764 432 12222232 22 13589999997
Q ss_pred ccccc---cccCcCC---------H-------HHHHHHHhhhccCCcEEEEEeC----hhhHHHHHHHHhcCCceEE
Q 010592 422 HGLFS---LYKDKCN---------I-------EDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 422 ~~~~~---~~~~~~~---------~-------~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~~w~~~ 475 (506)
+.--+ ......+ + ..+|.++.++|||||+|+.+.- .+-.+.++.+++...+++.
T Consensus 182 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l~ 258 (456)
T 3m4x_A 182 DAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIE 258 (456)
T ss_dssp ECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred CCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEEE
Confidence 43211 1111101 1 1689999999999999998542 2355667777877766543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-09 Score=101.49 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=67.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCC----CceeEEEEc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYP----RTYDLIHAH 422 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p----~s~Dlv~~~ 422 (506)
+......+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++. ....+...+.++..++ ++| .|.++
T Consensus 25 ~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n 100 (245)
T 1yub_A 25 LNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGN 100 (245)
T ss_dssp CCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEE
T ss_pred cCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEe
Confidence 334456789999999999999999875 58999999999999887652 1122333345554433 578 56664
Q ss_pred ccccc--------ccCcCCHHHHH----HHHhhhccCCcEEEEEe
Q 010592 423 GLFSL--------YKDKCNIEDIL----LEMDRILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~--------~~~~~~~~~~l----~e~~RvLrPgG~~ii~d 455 (506)
.-+.. ..|......++ .++.|+|||||.+.|..
T Consensus 101 ~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 101 IPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 22210 01111222344 66999999999877643
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.45 E-value=8.6e-09 Score=99.45 Aligned_cols=112 Identities=10% Similarity=0.047 Sum_probs=72.8
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC-
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS- 164 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~- 164 (506)
.++.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++..+..... ....+.+...|...++++.
T Consensus 17 ~~~~i~~~~~~~--~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLNLK--ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCC--SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCC--CCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccC
Confidence 345566666443 3458999999999999999876 48899998876643322211 1234677778888888774
Q ss_pred CCeeEEEEcCccccc----------CCChHHHH----HHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPW----------GANDGRYM----IEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~----------~~~~~~~l----~e~~rvLkPGG~li~~~ 204 (506)
++| .|+++..+..- .......+ +.+.|+|+|||.+.+..
T Consensus 93 ~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 93 QRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 689 67776432110 11222333 66888999998877654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5e-07 Score=89.49 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=67.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.|.+.+... ++.+|||||||+|.++..|+++ .|+++|+++.++..+..... ...++.+..+|+..++++
T Consensus 36 ~~i~~~Iv~~l~~~--~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 36 KNFVNKAVESANLT--KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGG
T ss_pred HHHHHHHHHhcCCC--CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcc
Confidence 44566777777543 3459999999999999999886 58999999987765554443 234678888999988888
Q ss_pred CCCeeEEEEcCcc
Q 010592 164 SRAFDMAHCSRCL 176 (506)
Q Consensus 164 ~~sfDlV~~~~~l 176 (506)
+.+||.|+++..+
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 8889999988654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.42 E-value=3e-07 Score=91.43 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEccc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~~ 424 (506)
.....+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ ++ ..+...+.++..++ .+||+|.++..
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~D~Vv~n~p 115 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVFPKFDVCTANIP 115 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCCCCCSEEEEECC
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCcccCCEEEEcCC
Confidence 3445689999999999999999875 4899999999999988875 22 23344456665555 79999999654
Q ss_pred cccccCcCCHHHHH---------------HHHhhhccCCcE
Q 010592 425 FSLYKDKCNIEDIL---------------LEMDRILRPEGA 450 (506)
Q Consensus 425 ~~~~~~~~~~~~~l---------------~e~~RvLrPgG~ 450 (506)
+.... ..+..+| ....|+++|+|.
T Consensus 116 y~~~~--~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 116 YKISS--PLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp GGGHH--HHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred ccccc--HHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 43111 0112333 447789988884
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-06 Score=88.62 Aligned_cols=118 Identities=12% Similarity=0.163 Sum_probs=80.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C---CCce
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y---PRTY 416 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~---p~s~ 416 (506)
+......+|||+|||+|.++..|++.+ ..|+++|.++.|++.|.++ |+ ..+...+.++.. . +++|
T Consensus 282 l~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-~~v~f~~~d~~~~l~~~~~~~~~f 357 (433)
T 1uwv_A 282 LDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGF 357 (433)
T ss_dssp HTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSSGGGTTCC
T ss_pred hcCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEECCHHHHhhhhhhhcCCC
Confidence 333445689999999999999999873 5899999999999988764 22 122222333322 1 2689
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
|+|.++- ++.....++..+. -++|++.++++.....+..--.++...+|++..
T Consensus 358 D~Vv~dP------Pr~g~~~~~~~l~-~~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 358 DKVLLDP------ARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIAR 410 (433)
T ss_dssp SEEEECC------CTTCCHHHHHHHH-HHCCSEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEECC------CCccHHHHHHHHH-hcCCCeEEEEECChHHHHhhHHHHHHCCcEEEE
Confidence 9999832 2223345555554 489999999998876554444555666888654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 506 | ||||
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 4e-06 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 6e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 1e-04 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 5e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.001 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.001 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.002 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.003 |
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (107), Expect = 4e-06
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 7/151 (4%)
Query: 96 IPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALER--GVPAVIG 153
PIK G + L G + +++ + ++ + ++
Sbjct: 69 FPIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVP 126
Query: 154 VLGTIKMPYASR-AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS--GPPINWK 210
+LG P R + + + L+ GGY +++ I+
Sbjct: 127 ILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT 186
Query: 211 TNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241
+ R E E ++ E NL +EK
Sbjct: 187 KEPEQVFREVERELSEYFEVIERLNLEPYEK 217
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 43.5 bits (102), Expect = 2e-05
Identities = 18/154 (11%), Positives = 46/154 (29%), Gaps = 19/154 (12%)
Query: 98 IKNGTVRTALDTGCGVASWGAYL-----WSRNVIAMSFAPRDSHEAQVQFALERGVPAVI 152
++ G L+ G G + +Y+ + + + +A + + V
Sbjct: 83 LRPG--MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR 140
Query: 153 GVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTN 212
I + + + A + PW ++ ++ +++PG P +
Sbjct: 141 TSRSDIADFISDQMY-DAVIADIPDPW-----NHVQKIASMMKPGSVATFYLPNFDQ--- 191
Query: 213 YKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246
++ L E L+ +G
Sbjct: 192 ---SEKTVLSLSASGMHHLETVELMKRRILVREG 222
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.4 bits (98), Expect = 6e-05
Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 6/146 (4%)
Query: 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALER 146
+++++ + R LD CG L R + + + +
Sbjct: 28 DFVEEIFKEDAKREV--RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE 85
Query: 147 GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP--WGANDGRYMIEVDRVLRPGGYWVLSG 204
+ + G + FD I + + +V L+PGG ++
Sbjct: 86 RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
Query: 205 PPINWKTNYKAWQRPKEELQEEQRKI 230
P W + E + E++ +
Sbjct: 146 P--CWFYGGRDGPVVWNEQKGEEKLV 169
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 1/128 (0%)
Query: 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLAD 386
Y+ + K ++ ++I + R ++D+ G G + V+ +
Sbjct: 16 YRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEM 75
Query: 387 KNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRIL 445
+ + I + +D + +Y D+ ++ + ++ L
Sbjct: 76 LRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEAL 135
Query: 446 RPEGAIII 453
+P G I
Sbjct: 136 KPGGVFIT 143
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 19/157 (12%)
Query: 96 IPIKNGTVRTALDTGCGVASWGAYL----WSRNVIAMSFAPRDSHEAQVQFALERGVPAV 151
+PIK + L G + +++ V A+ +APR E +
Sbjct: 70 MPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL---DACAERENI 124
Query: 152 IGVLGTIKMPYASR-AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS------G 204
I +LG P + + + L+ GGY +++
Sbjct: 125 IPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSID 184
Query: 205 PPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241
+ K +K KE L+ KI + ++ +EK
Sbjct: 185 VTKDPKEIFKEQ---KEILEAGGFKIVDEVDIEPFEK 218
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 30/235 (12%)
Query: 23 HCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFP 82
H A +GYV P R P +A +A + ++ +
Sbjct: 24 HQFDMAKEGYVNLLPVQHKRSRDPGDSAEM-----MQARRAFLDAG-----------HYQ 67
Query: 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQF 142
D + QL + K V LD GCG + + ++ + ++ D + ++
Sbjct: 68 PLRDAIVAQLRERLDDKATAV---LDIGCGEGYY-THAFADALPEITTFGLDVSKVAIKA 123
Query: 143 ALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202
A +R V + ++P++ + D E+ RV++PGG+ +
Sbjct: 124 AAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP--------CKAEELARVVKPGGWVIT 175
Query: 203 SGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKKVND 257
+ P + + E+ E++ + + + +
Sbjct: 176 ATP--GPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPMRLRGDEAVA 228
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (91), Expect = 5e-04
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 1/105 (0%)
Query: 105 TALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164
+DTG G + A L + + E + A + TIK+ S
Sbjct: 106 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 165
Query: 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209
FD + Y+ + L+ GG + P N
Sbjct: 166 EGFDEKDVDALFLDVPDPW-NYIDKCWEALKGGGRFATVCPTTNQ 209
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 0.001
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 6/123 (4%)
Query: 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQF 142
++ L V+ +K G LD G G + + + +A+ +
Sbjct: 19 EEKYATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA 76
Query: 143 ALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202
V + A+ D+A C + + L+PGG ++
Sbjct: 77 EELGVSERVHFIHNDAAGYVANEKCDVAACVGATW-IAGGFAGAEELLAQSLKPGGIMLI 135
Query: 203 SGP 205
P
Sbjct: 136 GEP 138
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 38.3 bits (88), Expect = 0.001
Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 9/144 (6%)
Query: 86 DKYIDQLASVI--PIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFA 143
D Y+ L + + K + +D GCG G L + DS E + A
Sbjct: 12 DDYVSFLVNTVWKITKPVHI---VDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA 68
Query: 144 LERGVPAVIGVLGTIKMPYASRAFDMAHC--SRCLIPWGANDGRYMIEVDRVLRPGGYWV 201
E D + + ++ ++ GG +
Sbjct: 69 RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128
Query: 202 LSGPPINWKTNYKAWQRPKEELQE 225
P +W +N ++ E+ E
Sbjct: 129 CFEP--HWISNMASYLLDGEKQSE 150
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.0 bits (87), Expect = 0.002
Identities = 21/199 (10%), Positives = 50/199 (25%), Gaps = 19/199 (9%)
Query: 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFA 143
+Y L ++ LD CG L +V ++ + + A +
Sbjct: 42 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW 99
Query: 144 LERGVPAVIGVLGTI--------------KMPYASRAFDMAHCSRCLIPWGANDGRYMIE 189
R PA + + + +
Sbjct: 100 NRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKN 159
Query: 190 VDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIA 249
+ ++RPGG V+ ++ + P + + + ++I +
Sbjct: 160 IASMVRPGGLLVIDHRNYDYILSTG-CAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTL 218
Query: 250 VWQKKVNDESCRARRDDSR 268
+ +V S+
Sbjct: 219 DYTVQVPGAGRDGAPGFSK 237
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 37.2 bits (85), Expect = 0.003
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 3/114 (2%)
Query: 107 LDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164
LD G G I + A + +P+
Sbjct: 21 LDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80
Query: 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQR 218
+FD+ C + ++ + + EV RVL+ G ++L +
Sbjct: 81 DSFDIITCRYAAHHF-SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 133
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 506 | |||
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.78 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.71 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.64 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.63 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.62 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.6 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.59 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.58 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.58 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.57 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.56 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.56 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.56 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.55 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.55 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.55 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.54 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.53 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.53 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.52 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.52 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.52 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.51 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.5 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.49 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.49 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.48 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.47 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.46 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.46 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.46 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.46 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.45 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.45 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.45 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.45 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.45 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.45 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.45 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.44 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.44 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.43 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.43 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.42 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.42 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.41 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.37 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.35 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.34 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.32 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.31 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.29 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.29 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.28 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.27 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.26 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.26 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.26 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.25 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.24 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.24 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.23 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.23 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.22 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.2 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.19 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.18 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.18 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.16 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.16 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.16 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.13 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.12 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.12 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.09 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.08 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.07 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.06 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.06 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.05 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.05 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.04 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.02 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.02 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.99 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.95 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.88 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.86 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.85 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.83 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.83 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.82 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.8 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.79 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.78 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.73 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.72 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.65 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.62 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.61 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.6 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.59 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.56 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.55 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.55 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.51 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.49 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.49 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.44 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.42 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.42 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.41 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.41 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.34 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.31 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.31 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.29 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.26 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.25 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.25 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.24 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.23 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.22 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.18 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.14 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.14 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.13 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.12 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.08 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.08 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.06 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.04 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.03 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.03 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.02 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.01 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.01 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.99 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.97 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.97 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.97 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.94 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.82 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.76 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.72 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.69 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.63 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.63 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.62 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.58 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.56 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.54 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.51 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.51 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.47 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.42 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.39 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.39 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.37 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.34 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.34 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.33 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.33 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.27 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.25 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.15 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.09 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.03 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.92 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 96.92 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.91 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 96.89 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.89 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 96.87 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.8 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.66 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 96.65 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.56 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.53 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.52 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.5 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.44 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.39 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.13 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.0 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 95.94 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.82 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.76 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.66 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.58 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.47 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.43 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.93 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.69 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.69 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.68 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.37 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.24 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.05 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 93.49 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.11 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.09 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 92.96 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.86 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.77 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.7 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.51 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.35 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.91 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.76 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.72 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.63 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.51 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 91.39 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.34 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.61 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.24 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.24 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.72 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.55 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 88.14 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 87.84 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.45 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.41 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.04 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 85.82 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.65 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 84.46 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 84.13 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.0 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 83.64 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 83.47 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 83.32 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.28 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 82.85 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 82.1 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 81.53 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 81.21 |
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.1e-19 Score=171.87 Aligned_cols=161 Identities=20% Similarity=0.341 Sum_probs=123.6
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChhhHHHHHHHH
Q 010592 13 RHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQL 92 (506)
Q Consensus 13 ~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l 92 (506)
-.|+. .|+|+++++||.++++-+..+ +..+++...+..+++.|+.. ..+..-.+..++.+
T Consensus 18 l~C~~----~h~fd~~~~Gy~~ll~~~~~~-----~~~~~~~~~~~~ar~~~l~~-----------g~~~~l~~~~~~~l 77 (268)
T d1p91a_ 18 YICPQ----RHQFDMAKEGYVNLLPVQHKR-----SRDPGDSAEMMQARRAFLDA-----------GHYQPLRDAIVAQL 77 (268)
T ss_dssp EECTT----CCEEEBCTTSCEECSCSSSSC-----SCCCSSSHHHHHHHHHHHTT-----------TTTHHHHHHHHHHH
T ss_pred EECCC----CCccccccCceEecccccccc-----cCCCCCCHHHHHHHHHHHHc-----------CchHHHHHHHHHHH
Confidence 46875 789999999999988765554 34556777888888877761 12223345555566
Q ss_pred HhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 010592 93 ASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 93 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfD 168 (506)
.+.++ .++.+|||||||+|.++..|++. + ++++|+|+ .+++.|+++...+.+.++|+..+|+++++||
T Consensus 78 ~~~~~---~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~-----~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD 149 (268)
T d1p91a_ 78 RERLD---DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMD 149 (268)
T ss_dssp HHHSC---TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEE
T ss_pred HHhcC---CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchH-----hhhhhhhcccccccceeeehhhccCCCCCEE
Confidence 66654 34558999999999999999886 3 55677655 5556777777788999999999999999999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010592 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
+|++.+++++ ++|+.|+|||||+|++++|..++
T Consensus 150 ~v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 150 AIIRIYAPCK--------AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp EEEEESCCCC--------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred EEeecCCHHH--------HHHHHHHhCCCcEEEEEeeCCcc
Confidence 9999887654 58999999999999999886644
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.71 E-value=1.5e-17 Score=156.92 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=91.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
.++++.+++.++ .+|||||||+|.++..|+++ .++++|+|+.++..+..........++.+.+.+...+|+++++|
T Consensus 5 ~~ll~~~~l~~~--~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 5 AKLMQIAALKGN--EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHHTCCSC--CEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHhcCCCCc--CEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 455666665544 49999999999999999987 48899999887766554444444455788899999999999999
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+|+|..+++|+ +++..+|+++.|+|||||+|++..
T Consensus 83 D~v~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 83 HIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccc-CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 999999999774 678999999999999999999964
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=2.6e-17 Score=156.14 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=93.7
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA 163 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~ 163 (506)
+..+.+.+.++++++. +|||||||+|.++..|+++ .++++|+|+.++..+... +...+. .+.+.++|+..+|++
T Consensus 3 ~~~~~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~-~~~~~~~~~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF-AQEKGVENVRFQQGTAESLPFP 79 (234)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHHTCCSEEEEECBTTBCCSC
T ss_pred hHHHHHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhh-hccccccccccccccccccccc
Confidence 3456677777665544 9999999999999999987 489999998777555533 333443 488888999999999
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++||+|+|..+++| .+++..+++++.|+|||||+++++.
T Consensus 80 ~~~fD~v~~~~~l~~-~~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 80 DDSFDIITCRYAAHH-FSDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp TTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceeeeeceeec-ccCHHHHHHHHHHeeCCCcEEEEEE
Confidence 999999999999966 5678999999999999999999964
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.5e-16 Score=148.86 Aligned_cols=102 Identities=21% Similarity=0.342 Sum_probs=85.7
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
..+|||||||+|.++..|++.+ ++++|+|+.++..+. +.+...+....+...|+.++|+++++||+|+|..+++|+.
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~ 116 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence 3589999999999999999874 799999887775554 4444556777888889999999999999999999998864
Q ss_pred C-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 181 A-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 181 ~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+ +...+|+++.++|||||+|++..+
T Consensus 117 ~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 117 PLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 3 447899999999999999998754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=9e-16 Score=142.36 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=91.2
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcCC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~ 433 (506)
.+|||||||+|.++..|.+ ++++|.|++|++.|.++++ ..+...+++++..+++||+|+|..+|+|.. +
T Consensus 38 ~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d 106 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---D 106 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---C
T ss_pred CeEEEECCCCcccccccce-------EEEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---c
Confidence 3699999999999988864 4789999999999999975 334444566776669999999999999654 7
Q ss_pred HHHHHHHHhhhccCCcEEEEEeChh------------------------hHHHHHHHHhcCCceEE
Q 010592 434 IEDILLEMDRILRPEGAIIIRDEVD------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii~d~~~------------------------~~~~~~~~~~~~~w~~~ 475 (506)
+..+|.|+.|+|||||.++|.+... ..+++.+++++.+++..
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEE
Confidence 8899999999999999999964310 35789999999999744
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.63 E-value=7.5e-16 Score=150.12 Aligned_cols=113 Identities=16% Similarity=0.302 Sum_probs=89.5
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY 162 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~ 162 (506)
+++.+....++. ++.+|||||||+|.++..|+++ .|+++|+++.++..+... +...++ .+.+..++..++|+
T Consensus 55 ~~~~l~~~~~l~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~-~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 55 LASELAMTGVLQ--RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEY-NNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHHhcCCC--CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcc-cccccccccccccccccccccc
Confidence 334444444444 3459999999999999999875 488999988776554433 333344 47888899999999
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++||+|+|..+++|+ +++..+|+++.|+|||||+|++..
T Consensus 132 ~~~sfD~V~~~~~l~h~-~d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp CTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhccchhhhc-cCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999999886 578999999999999999999975
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=3.9e-16 Score=147.79 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=82.4
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCCCCceeE
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDL 418 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~p~s~Dl 418 (506)
+......+..+|||+|||+|.++..|++.+ .+|+++|.|++|+++|.++ |+ +..+..-.++++..+++||+
T Consensus 9 ~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 85 (234)
T d1xxla_ 9 IKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI 85 (234)
T ss_dssp HHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred HHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccce
Confidence 344555566789999999999999999875 5899999999999988766 22 22222223445544499999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|..+|++ ..++..+|.|+.|+|||||++++.+
T Consensus 86 v~~~~~l~~---~~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 86 ITCRYAAHH---FSDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp EEEESCGGG---CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeceeec---ccCHHHHHHHHHHeeCCCcEEEEEE
Confidence 999999984 4478999999999999999999965
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.62 E-value=4.1e-16 Score=146.84 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=81.4
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCCCCcee
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYD 417 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~p~s~D 417 (506)
++..+.-.+..+|||||||+|.++..|++.+ .+|+++|.|++|++.|.++ +. +...+.-++++++.+++||
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD 83 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH 83 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence 3443444445689999999999999999876 4799999999999998765 32 2223223344554449999
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|+|..+|+|. .++..+|.|+.|+|||||+++|.|
T Consensus 84 ~v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 84 IVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccc---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999844 578899999999999999999965
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=1.2e-15 Score=144.48 Aligned_cols=98 Identities=21% Similarity=0.341 Sum_probs=81.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEc-cccccccCc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH-GLFSLYKDK 431 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~-~~~~~~~~~ 431 (506)
..+|||+|||+|.++..|++.+ ..|+++|.|+.|++.|.+++....+..-.+++++.+++||+|.|. ++++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~--- 116 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV--- 116 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC---
T ss_pred CCEEEEECCCCchhcccccccc---eEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhh---
Confidence 3479999999999999999986 489999999999999999986444433345666555999999985 577744
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.++..+|.|+.|+|||||.++|...
T Consensus 117 ~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 117 ENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 4778899999999999999999764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=8.7e-16 Score=145.50 Aligned_cols=98 Identities=23% Similarity=0.402 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||+|||+|.++..|++.+ |+++|+|+ .+++.|++++... +..+++.++|+++++||+|+|...+.|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~-----~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSK-----EMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeeccc-----ccccccccccccc-cccccccccccccccccceeeecchhhh
Confidence 34589999999999999999885 67777765 4556677766543 4567889999999999999986543344
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+++..+|+++.|+|||||+++++.+
T Consensus 116 ~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 116 VENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 67889999999999999999999875
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.59 E-value=2.4e-15 Score=144.45 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=103.9
Q ss_pred HHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccc---cCCCCCCc
Q 010592 340 AYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCE---AFSTYPRT 415 (506)
Q Consensus 340 ~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~---~~~~~p~s 415 (506)
....++..+...+..+|||+|||+|.++..|+.+.. -+|+++|.++.|++.|+++.- ....+..+. +++..+++
T Consensus 81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (254)
T d1xtpa_ 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCc
Confidence 345556666666778999999999999999876532 379999999999999988731 122222333 44434489
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEEeec
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~~~~ 479 (506)
||+|+|..+|.|+.+ .++..+|.++.|+|||||+++|.|... ..+.+++++++.++++...+.
T Consensus 159 fD~I~~~~vl~hl~d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred cceEEeeccccccch-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 999999999997652 246689999999999999999965421 357899999999999765554
Q ss_pred CC
Q 010592 480 ED 481 (506)
Q Consensus 480 ~~ 481 (506)
..
T Consensus 238 q~ 239 (254)
T d1xtpa_ 238 QE 239 (254)
T ss_dssp CT
T ss_pred eC
Confidence 43
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=2.8e-15 Score=142.85 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=91.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
...++.+.+.+.+.++ .+|||||||+|.++..|+++ .++++|+|+.++..+. +.+.+.++. +.+.+.|...+
T Consensus 19 ~~~~~~l~~~~~l~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHHHHHTCCCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHHHcCCCCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhhhHHhhc
Confidence 5566778888876554 49999999999999999875 3788888887665443 344455543 78888888887
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++++||+|+|..+++|+ .+...+++++.|+|||||++++..+
T Consensus 96 -~~~~~fD~v~~~~~~~~~-~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 96 -VANEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp -CCSSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -cccCceeEEEEEehhhcc-CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 468899999999999775 5679999999999999999999754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.3e-15 Score=140.29 Aligned_cols=128 Identities=18% Similarity=0.258 Sum_probs=97.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceecccccc---CCCCCCceeEEEEcc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEA---FSTYPRTYDLIHAHG 423 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~---~~~~p~s~Dlv~~~~ 423 (506)
..+..+|||||||+|.++..|+++.. .+|+++|.|++||+.|+++.- .......|.+ ++..+++||+|++..
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 34557899999999999999876543 479999999999999988732 1222333443 444459999999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---------------hHHHHHHHHhcCCceEEEeecC
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------EIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
+|+|+.+ .++..+|.++.|+|||||.++|.|... ..+++++++++.++++...+..
T Consensus 136 ~l~h~~~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 136 VIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccccchh-hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence 9987653 235679999999999999999975321 4688999999999997655443
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=1.9e-15 Score=141.21 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=78.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccc---cCCCCCCceeEEEEccccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCE---AFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~---~~~~~p~s~Dlv~~~~~~~~~ 428 (506)
.+|||||||+|.++..|++.+ .+|+++|.|++|++.|+++.. .......+. .++..+++||+|+|..+|.|+
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence 479999999999999999976 479999999999999987621 111222233 344444999999999999876
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.+ .++..+|.|+.|+|||||+++|.+..
T Consensus 116 ~~-~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EP-LELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred Ch-hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 42 35778999999999999999997653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.56 E-value=8.5e-15 Score=139.43 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=78.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCC--CCceeEEEEc-ccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTY--PRTYDLIHAH-GLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~--p~s~Dlv~~~-~~~~~ 427 (506)
.++|||+|||+|.++..|++.+ .+|+++|.|++||+.|.+|.- ...+...+.++..+ +++||+|.|. ++|.+
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 4579999999999999999987 479999999999999988621 01223334555444 4899999985 67887
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
..+..++..+|.++.|.|||||.|+|
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 77777888999999999999999996
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.56 E-value=5.2e-15 Score=144.00 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=91.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccCCCCCCceeEEEEc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAFSTYPRTYDLIHAH 422 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~~~~p~s~Dlv~~~ 422 (506)
..+..+|||||||+|.++..|+++. ..+|+++|.|+.|++.|.++ |+...+...+ +++|..+++||+|+|.
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~ 142 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 142 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhcc
Confidence 3445689999999999999998752 25899999999999988876 4422222223 4455444999999999
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~ 475 (506)
.+|.|. .++..+|.|+.|+|||||+|+|.|.. .......++++..+|+..
T Consensus 143 ~~l~h~---~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i 214 (282)
T d2o57a1 143 DAFLHS---PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTL 214 (282)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEE
T ss_pred chhhhc---cCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceE
Confidence 999855 47789999999999999999996531 124566777888888744
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=8e-15 Score=142.60 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC
Q 010592 335 KKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS 410 (506)
Q Consensus 335 ~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~ 410 (506)
....+.+..++..+...+..+|||||||+|+++.++++.. ..+|+++|+|+++++.|.+| |+...+.....+..
T Consensus 35 ~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~ 112 (280)
T d2fk8a1 35 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE 112 (280)
T ss_dssp HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence 3345566667777777778899999999999999998752 25899999999999988776 55444444455666
Q ss_pred CCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 411 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 411 ~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.++++||.|.+..+|.|..+ .....+|+++.|+|||||.++|.+
T Consensus 113 ~~~~~fD~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 113 DFAEPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GCCCCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhccchhhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEE
Confidence 67899999999999998763 367889999999999999999853
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=3.2e-15 Score=142.42 Aligned_cols=116 Identities=14% Similarity=0.190 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc--ceeccccccCCC
Q 010592 334 WKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI--GIYHDWCEAFST 411 (506)
Q Consensus 334 W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~--~~~~~~~~~~~~ 411 (506)
+...+..+..++.........+|||+|||||.++..|++.+ .+|+++|.|++|++.|.++... ..+...+.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~ 99 (251)
T d1wzna1 23 VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE 99 (251)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc---eEEEEEeeccccccccccccccccccchheehhhhh
Confidence 33344445555554555566789999999999999999987 4899999999999999887310 012222344443
Q ss_pred --CCCceeEEEEc-cccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 412 --YPRTYDLIHAH-GLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 412 --~p~s~Dlv~~~-~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++++||+|+|. ++|.+. +..++..+|.++.|+|||||+++|
T Consensus 100 l~~~~~fD~I~~~~~~~~~~-~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 100 IAFKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp CCCCSCEEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccchHhhhhhhhhcC-ChHHHHHHHHHHHHHcCCCcEEEE
Confidence 34899999995 567654 334667899999999999999998
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=3.9e-15 Score=141.88 Aligned_cols=125 Identities=13% Similarity=0.103 Sum_probs=92.2
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLI 419 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv 419 (506)
..+...+..+|||||||+|.++..|++.. ...|+++|.|+.|++.|+++ |+-..+...+.++.. .+++||+|
T Consensus 27 ~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v 104 (245)
T d1nkva_ 27 RVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVA 104 (245)
T ss_dssp HHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEE
T ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEE
Confidence 33344445689999999999999998742 25789999999999988776 543223333344443 34899999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~ 475 (506)
+|..++.|.. ++..+|.||.|+|||||+++|.+.. .....+...+.+.+|++.
T Consensus 105 ~~~~~~~~~~---d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v 179 (245)
T d1nkva_ 105 ACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 179 (245)
T ss_dssp EEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred EEEehhhccC---CHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEE
Confidence 9999998554 6788999999999999999996531 134556677888888743
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.55 E-value=4.5e-15 Score=139.59 Aligned_cols=102 Identities=8% Similarity=0.090 Sum_probs=83.7
Q ss_pred CceEEeecCcccHHHHHHHhCC-CeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~-~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~ 426 (506)
..+|||+|||||..+..|++.- ....+|+++|.|++|++.|.++ +....++..+.++..+| ..+|+|+|+.+++
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 3579999999999998887631 1236999999999999999886 34455666667777777 8999999999887
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+. +..++..+|.+|+|+|||||.+++.|
T Consensus 120 ~~-~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 120 FL-PPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GS-CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc-ChhhHHHHHHHHHHhCCCCceeeccc
Confidence 65 35578899999999999999999976
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=1.8e-14 Score=137.02 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=82.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcC-cccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSR-CLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~-~l~~ 178 (506)
+..+|||||||+|.++..|+++ .++++|+|+.|+..+.. .+.+.+.++.+.++|+.+++++ ++||+|+|.. +++|
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~-~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARR-KAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccc-ccccccccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 4458999999999999999988 48899999887755544 3445677889999999999987 5899999975 4444
Q ss_pred cC-CChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 179 WG-ANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 179 ~~-~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+. ++...+|+++.++|||||+|++..+.
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 32 22368999999999999999998643
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.3e-14 Score=138.70 Aligned_cols=142 Identities=12% Similarity=0.037 Sum_probs=101.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cce----------------------------
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGI---------------------------- 401 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~---------------------------- 401 (506)
...+|||+|||+|.++..++..+ ..+|+++|.|++|++.|.++-. ...
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 35689999999999988777755 3589999999999999876521 000
Q ss_pred -------eccccccCC--CC-CCceeEEEEccccccccC-cCCHHHHHHHHhhhccCCcEEEEEeChh------------
Q 010592 402 -------YHDWCEAFS--TY-PRTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEVD------------ 458 (506)
Q Consensus 402 -------~~~~~~~~~--~~-p~s~Dlv~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------ 458 (506)
......+.. .+ +++||+|.+..++++... +.++..+|.+|.|+|||||++++.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 000011111 23 389999999999986642 3366789999999999999999976432
Q ss_pred ----hHHHHHHHHhcCCceEEEeecC-------CCCCCCeEEEEEEec
Q 010592 459 ----EIIKVKKIVGGMRWDTKMVDHE-------DGPLVPEKILVAVKQ 495 (506)
Q Consensus 459 ----~~~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~l~~~k~ 495 (506)
..+.+++++++.++++...+.. .....+..+++|||+
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence 4688999999999986644221 222345678889985
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.9e-15 Score=139.07 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=82.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+..+|||||||+|.++..|+.+ .|+++|+|+.++..+.............+.+.|+..+++++++||+|+|..+++|
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h 139 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 139 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 4468999999999999998765 4889999887776554443332223457888999999999999999999999988
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 179 WGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+.. ..+++++.++|||||.+++..
T Consensus 140 ~~~~~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 140 LTDQHLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhhhhHHHHHHHhcCCcceEEEEE
Confidence 65422 579999999999999999975
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.52 E-value=2.4e-14 Score=131.85 Aligned_cols=99 Identities=18% Similarity=0.334 Sum_probs=80.5
Q ss_pred CEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 104 RTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
.+|||||||+|..+..|++++ ++++|+|+.++..+... +.+.+.+ +.+...|...+++ +++||+|+|..+++|+.
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~ 109 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERI-KAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLE 109 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSC
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHH-hhhccccchhhhheecccccc-cccccEEEEeeeeecCC
Confidence 389999999999999999985 78999998777655433 4445554 5677778777775 67899999999998875
Q ss_pred CCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 181 AND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 181 ~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.. ..+++++.++|+|||++++..
T Consensus 110 ~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 110 AQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp TTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 544 689999999999999999965
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=2.1e-14 Score=132.94 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=79.8
Q ss_pred EEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCChH
Q 010592 105 TALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDG 184 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~ 184 (506)
+|||||||+|.++..+.+ ++++|+|+. +++.+++++ +.+.+.+...+|+++++||+|+|..+++|+ +++.
T Consensus 39 ~vLDiGcG~G~~~~~~~~--~~giD~s~~-----~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~-~d~~ 108 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI--KIGVEPSER-----MAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFV-DDPE 108 (208)
T ss_dssp CEEEETCTTSTTHHHHTC--CEEEESCHH-----HHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGS-SCHH
T ss_pred eEEEECCCCcccccccce--EEEEeCChh-----hcccccccc--cccccccccccccccccccccccccccccc-cccc
Confidence 799999999999988864 688888764 455666664 567888999999999999999999999886 6789
Q ss_pred HHHHHHHHhcCCCeEEEEEcCCCC
Q 010592 185 RYMIEVDRVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 185 ~~l~e~~rvLkPGG~li~~~p~~~ 208 (506)
.+|+++.++|+|||.+++..+...
T Consensus 109 ~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 109 RALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSS
T ss_pred cchhhhhhcCCCCceEEEEecCCc
Confidence 999999999999999999876553
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.52 E-value=1.9e-14 Score=136.96 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=85.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
+.+.+.+.....++.+|||||||+|.++..|++++ ++++|+|+.|+..+. +.+...+.++.+.++|+..++++ ++|
T Consensus 25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~-~~~~~~~~~v~~~~~d~~~~~~~-~~f 102 (246)
T d1y8ca_ 25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE-NKFRSQGLKPRLACQDISNLNIN-RKF 102 (246)
T ss_dssp HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHH-HHHHHTTCCCEEECCCGGGCCCS-CCE
T ss_pred HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcc-ccccccCccceeeccchhhhccc-ccc
Confidence 33444443233345689999999999999999985 888998887776554 33445677889999999888864 689
Q ss_pred eEEEEc-CcccccCC--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 168 DMAHCS-RCLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 168 DlV~~~-~~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+|+|. .++.|+.. +...+|+++.+.|||||.|++..+
T Consensus 103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 999986 44545433 336799999999999999998653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=3.8e-14 Score=138.26 Aligned_cols=116 Identities=12% Similarity=0.158 Sum_probs=91.0
Q ss_pred HHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC
Q 010592 337 HVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY 412 (506)
Q Consensus 337 ~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~ 412 (506)
..+.+..++..+...+..+|||||||.|+++.+++++ ...+|+++++|++++..|.++ |+...++....++++.
T Consensus 46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~--~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~ 123 (291)
T d1kpia_ 46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAE--YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 123 (291)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHh--cCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence 4445566666666777789999999999999999864 125899999999998877665 6655444445666667
Q ss_pred CCceeEEEEccccccccCc------CCHHHHHHHHhhhccCCcEEEEE
Q 010592 413 PRTYDLIHAHGLFSLYKDK------CNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~------~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+++||.|.|-.+|.|..+. .....++++++|+|||||+++|.
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 7999999999999977643 23578999999999999999984
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.50 E-value=3.9e-14 Score=137.86 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=90.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
+.|++.+.+.+... ..+.+|||||||+|.++..|++. .++++|+|+.++..+. +.....+.++.+.+.|+..+
T Consensus 12 ~d~l~~l~~~~~~~-~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~f~~~d~~~~ 89 (281)
T d2gh1a1 12 DDYVSFLVNTVWKI-TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLEGDATEI 89 (281)
T ss_dssp HHHHHHHHHTTSCC-CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH-HHHHSSSSEEEEEESCTTTC
T ss_pred HHHHHHHHHHHhcc-CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh-cccccccccccccccccccc
Confidence 55666676655222 34568999999999999999864 3789999887665443 33344456678888899888
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++ ++||+|+|..+++|+ +++..+|+++.++|||||.+++..|.
T Consensus 90 ~~~-~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 90 ELN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CCS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccc-CCceEEEEehhhhcC-CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 876 479999999999775 67899999999999999999998753
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.49 E-value=3e-14 Score=133.83 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=75.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|..+..|++. .++++|+|+.|+..+....+. .+....+........+++...+|+|+|+.+
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~-~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT-SCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh-hcccchhhhccchhhccccccceeeEEeee
Confidence 4558999999999999988863 478999988777655544432 233333333333344555668999999999
Q ss_pred ccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 176 LIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++++.. ++..+|++++|+|||||.|++..+
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 877643 457999999999999999999753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.49 E-value=2.8e-14 Score=134.17 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=91.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+ .+|+++|.|++|++.|.++.. +...+.-.++++ .+++||+|.|.++|+|.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~-- 94 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHI-- 94 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGC--
T ss_pred CCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEec--
Confidence 4469999999999999999876 469999999999999988742 222222123332 35999999999999955
Q ss_pred cCCHHHHHHHHh-hhccCCcEEEEEeCh---------------------------------hhHHHHHHHHhcCCceEEE
Q 010592 431 KCNIEDILLEMD-RILRPEGAIIIRDEV---------------------------------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 431 ~~~~~~~l~e~~-RvLrPgG~~ii~d~~---------------------------------~~~~~~~~~~~~~~w~~~~ 476 (506)
.++..+|.|+. |+|||||.++|..+. -..+.++.++.+.++++..
T Consensus 95 -~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 95 -DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp -SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred -CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 57889999997 899999999996321 0256799999999998654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=3.8e-14 Score=137.01 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEcccccc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~ 427 (506)
...+..+|||+|||+|.++..|++.. ...+++++|.|+.|++.|.++.. +.....-.+++++.+++||+|++..++.
T Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~- 158 (268)
T d1p91a_ 81 LDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC- 158 (268)
T ss_dssp SCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC-
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH-
Confidence 34556789999999999999998863 23589999999999999998753 2222222355665569999999966554
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHH
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKK 465 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~ 465 (506)
.+.|+.|||||||+|++..... .+.+++.
T Consensus 159 ---------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~ 188 (268)
T d1p91a_ 159 ---------KAEELARVVKPGGWVITATPGPRHLMELKG 188 (268)
T ss_dssp ---------CHHHHHHHEEEEEEEEEEEECTTTTHHHHT
T ss_pred ---------HHHHHHHHhCCCcEEEEEeeCCcchHHHHH
Confidence 2689999999999999987543 3344443
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.47 E-value=6e-14 Score=136.51 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=79.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCCCC--CCceeEEEEcccc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~ 425 (506)
..+..+|||+|||+|.++..|++.-....+|+++|.|++|++.|.++. ....+...+.++..+ +++||+|+|.++|
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 345578999999999999999874212258999999999999998762 111233334444443 4899999999999
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+|.. ++..+|.++.|+|||||++++.|.
T Consensus 105 ~~~~---d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 105 LHMT---TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp GGCS---SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hcCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 8544 678999999999999999999764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.8e-14 Score=135.89 Aligned_cols=141 Identities=15% Similarity=0.108 Sum_probs=98.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--cccee---------------------------
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIY--------------------------- 402 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~--------------------------- 402 (506)
...+|||+|||+|.+...++.+. ..+|+++|.|++|++.+.++- ..+.+
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 45689999999998876655543 358999999999999987541 10000
Q ss_pred --------ccccc-----cCCCCCCceeEEEEcccccccc-CcCCHHHHHHHHhhhccCCcEEEEEeChh----------
Q 010592 403 --------HDWCE-----AFSTYPRTYDLIHAHGLFSLYK-DKCNIEDILLEMDRILRPEGAIIIRDEVD---------- 458 (506)
Q Consensus 403 --------~~~~~-----~~~~~p~s~Dlv~~~~~~~~~~-~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------- 458 (506)
.+... ..+..+++||+|.+..++++.. ++.++..+|.++.|+|||||.|++.+...
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~ 211 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence 00001 1112236899999999998664 34567899999999999999999965422
Q ss_pred ------hHHHHHHHHhcCCceEEEeecC-------CCC--CCCeEEEEEEe
Q 010592 459 ------EIIKVKKIVGGMRWDTKMVDHE-------DGP--LVPEKILVAVK 494 (506)
Q Consensus 459 ------~~~~~~~~~~~~~w~~~~~~~~-------~~~--~~~~~~l~~~k 494 (506)
..++|++++.+.++++...+.. .+. .....+++|||
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~~~~~~~d~~~~~~~~ArK 262 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQK 262 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEEEEEEeeccCcccccccccceEEEEEEEe
Confidence 5689999999999987643321 111 12346888888
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=7.6e-14 Score=135.57 Aligned_cols=125 Identities=14% Similarity=0.188 Sum_probs=89.6
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC-
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP- 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~- 149 (506)
|..+......+....++.+.+.+.+.+ +.+|||||||.|.++.+++++ .|+++++|+..+..+. +.+.+.++.
T Consensus 26 ~~~~~~tL~~AQ~~k~~~~~~~l~l~~--g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~ 102 (280)
T d2fk8a1 26 FEPPELTLEEAQYAKVDLNLDKLDLKP--GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNR 102 (280)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTSCCCT--TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSS
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcCCCC--CCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhcccc
Confidence 344444455555667788888886654 459999999999999998876 4788888775553332 334444544
Q ss_pred -eEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 150 -AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 -~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+...|...+ +++||.|++..+++|+.... ..+++++.++|||||.+++.+
T Consensus 103 ~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 103 SRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred chhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 33443444443 46899999999999976433 789999999999999999854
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=1.2e-13 Score=134.64 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=91.0
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCC-
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVP- 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~--v~~vdis~~di~~~~~~~a~~~~~~- 149 (506)
|+.+...+.......++.+.+.+.+.+ +.+|||||||.|.++.+++++ + ++++++|+..+..+. +.+.+.++.
T Consensus 35 ~~~~~~tL~~Aq~~k~~~~~~~l~l~~--G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~~ 111 (291)
T d1kpia_ 35 FERPDMTLEEAQYAKRKLALDKLNLEP--GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPR 111 (291)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHTTCCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCSS
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCC--CCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccch
Confidence 455555666666778889999997655 459999999999999999875 4 677777665443222 334444554
Q ss_pred -eEEEEeccccCCCCCCCeeEEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEc
Q 010592 150 -AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 -~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+...| .++.+++||.|+|..+++|+.+. -..+++++.++|||||.+++.+
T Consensus 112 ~v~~~~~d---~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 112 RKEVRIQG---WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CEEEEECC---GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hhhhhhhc---ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 3333333 34567899999999999997642 2689999999999999999854
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=8.4e-14 Score=133.10 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=95.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCC-CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p-~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++.++++.+ .+|+++|.++.|++.|+++ |+... ..+.++. .++ ++||+|.|+....
T Consensus 121 g~~VLDiGcGsG~l~i~aa~~g---~~V~gvDis~~av~~A~~na~~n~~~~~--~~~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGVRPR--FLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTCCCE--EEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCEEEEcccchhHHHHHHHhcC---CEEEEEECChHHHHHHHHHHHHcCCcee--EEeccccccccccccchhhhccccc
Confidence 4589999999999999998876 4799999999999998864 33111 1122222 233 8999999954333
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.+..++.++.|+|||||+|++++-.. ..+.+.+.+.+.+|++.....+ +.+..|+.+|
T Consensus 196 ------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~----~~Wv~l~~~r 254 (254)
T d2nxca1 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred ------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEE----CCEEEEEEeC
Confidence 35678999999999999999987543 5678889999999997654444 2588888776
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.45 E-value=4.9e-14 Score=135.12 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=83.9
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
.+++.++ .....+|||+|||+|.++..|+.+ .|+++|+++.++..+..... ......+.+.++..+++++++|
T Consensus 84 ~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T d1xtpa_ 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc--ccccceeEEccccccccCCCcc
Confidence 3444443 234558999999999999988754 48899998766644432221 1123567888999999999999
Q ss_pred eEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 168 DMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+|+|..+++|+.++. ..+|+++.++|||||+|++..+
T Consensus 160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999998875432 5889999999999999999753
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.45 E-value=7.8e-14 Score=128.36 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=77.8
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEcccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~~~~ 427 (506)
.+|||||||+|.++..|++++ .+|+++|.|+.|++.+.++ |+ ..+...+.++.. ++++||+|+|..+|+|
T Consensus 32 grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVVMMF 107 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred CcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeeeeec
Confidence 379999999999999999987 4799999999999987654 33 223333455543 3499999999999987
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.. ......+|.++.|+|||||++++..
T Consensus 108 ~~-~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 108 LE-AQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp SC-TTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 64 4567789999999999999999953
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2e-13 Score=128.63 Aligned_cols=124 Identities=9% Similarity=0.001 Sum_probs=92.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-------------------eeccccccCC
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-------------------IYHDWCEAFS 410 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-------------------~~~~~~~~~~ 410 (506)
....+|||+|||+|..+.+|++.| .+|+++|+|+.+++.|+++.- .. .+...|.++.
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G---~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRG---HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 345689999999999999999987 589999999999999887631 10 1112233332
Q ss_pred ----CCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------hhHHHHHHHHhcCCceE
Q 010592 411 ----TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 411 ----~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~~~~~~~~~~~~~~w~~ 474 (506)
..+.+||+|+...+|.+.. ..+.+.++.+|.|+|||||+++|.... -..++++.++.. .|++
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred hccccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence 2348999999999998665 456688999999999999998885321 145778998866 6887
Q ss_pred EEeec
Q 010592 475 KMVDH 479 (506)
Q Consensus 475 ~~~~~ 479 (506)
...+.
T Consensus 199 ~~le~ 203 (229)
T d2bzga1 199 RCLEK 203 (229)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65544
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.45 E-value=1.3e-13 Score=129.37 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=79.2
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~-~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||||||+|.++..|+++ .|+++|+|+.+ ++.|+++. ..+.+...+...+++ +++||+|+|..+++|+
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~-----i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA-----ISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI 94 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHH-----HHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGC
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHH-----hhhhhccccccccccccccccccc-ccccccccccceeEec
Confidence 347999999999999999987 58888887644 44555442 346677777777775 5789999999999885
Q ss_pred CCChHHHHHHHH-HhcCCCeEEEEEcCCCC
Q 010592 180 GANDGRYMIEVD-RVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 180 ~~~~~~~l~e~~-rvLkPGG~li~~~p~~~ 208 (506)
+++..+|.++. ++|||||.+++++|...
T Consensus 95 -~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 95 -DDPVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp -SSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred -CCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 67899999997 89999999999987543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=2.6e-13 Score=131.83 Aligned_cols=115 Identities=14% Similarity=0.201 Sum_probs=91.1
Q ss_pred HHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC
Q 010592 337 HVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY 412 (506)
Q Consensus 337 ~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~ 412 (506)
..+....+...+...+..+|||||||.|+++.++++. ...+|+++++|++.++.|.+| |+...+...+.++..+
T Consensus 47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~--~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~ 124 (285)
T d1kpga_ 47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF 124 (285)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhc--CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Confidence 3444555566666677789999999999999998874 236999999999999977665 4545554445677778
Q ss_pred CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.+||.|.|..+|.|..+ .....++.++.|+|||||.++|.
T Consensus 125 ~~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 125 DEPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp CCCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEE
Confidence 899999999999997653 35678999999999999999983
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=5.9e-14 Score=134.20 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=86.7
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEE
Q 010592 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGV 154 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~ 154 (506)
.+..|+.|.+.-.+.+.+.+.....++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+..++++..+..
T Consensus 95 pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~~~~~~ 173 (254)
T d2nxca1 95 PGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLE 173 (254)
T ss_dssp CC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEE
T ss_pred cccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCceeEEe
Confidence 34456666655444444444322245669999999999999988877 4899999998885544 55667788888887
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+... .++.++||+|+++....+ ...++.++.++|||||+|++++
T Consensus 174 ~d~~~-~~~~~~fD~V~ani~~~~----l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 174 GSLEA-ALPFGPFDLLVANLYAEL----HAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp SCHHH-HGGGCCEEEEEEECCHHH----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccc-cccccccchhhhcccccc----HHHHHHHHHHhcCCCcEEEEEe
Confidence 77653 345679999999754422 3678899999999999999985
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.45 E-value=8.3e-14 Score=133.15 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCC-CCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPY-ASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp~-~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|..+..+++. .++|+|+|+.++..+..+ +.+.+ ..+.+.++|+...++ ..++||+|+|.++
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 4558999999999998888875 378999998777555433 22222 347788888877766 4678999999999
Q ss_pred ccccCCCh---HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 176 LIPWGAND---GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++|+.... ..+++++.++|||||+|+++.+.
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 98865433 57999999999999999998753
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.44 E-value=2.1e-13 Score=130.49 Aligned_cols=149 Identities=22% Similarity=0.247 Sum_probs=104.5
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCCCceeE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDL 418 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p~s~Dl 418 (506)
++..+...+.++|||||||+|.++..|+++. ....++.+|.+ +|++.+.++ |+...+.....++ ...|..||+
T Consensus 72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~ 149 (253)
T d1tw3a2 72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADA 149 (253)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEE
T ss_pred HHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccCH-HHHHHHHHHHHHhhcccchhhccccchhhcccchhh
Confidence 3445566778899999999999999998753 23578888985 788877664 4433333333443 445688999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh--------------------------hHHHHHHHHhcCCc
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--------------------------EIIKVKKIVGGMRW 472 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--------------------------~~~~~~~~~~~~~w 472 (506)
|++.++|+++.+ .+...+|.++.|+|||||+|+|.|... ..+++++++++.++
T Consensus 150 v~~~~vlh~~~d-~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf 228 (253)
T d1tw3a2 150 IILSFVLLNWPD-HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGL 228 (253)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTE
T ss_pred eeeccccccCCc-hhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCC
Confidence 999999986542 234578999999999999999976321 24678889999999
Q ss_pred eEEEeecCCCCCCC-eEEEEEEec
Q 010592 473 DTKMVDHEDGPLVP-EKILVAVKQ 495 (506)
Q Consensus 473 ~~~~~~~~~~~~~~-~~~l~~~k~ 495 (506)
++..+..-.++..+ ...|++.|+
T Consensus 229 ~~~~v~~~~~p~~~~~~~li~~~P 252 (253)
T d1tw3a2 229 VVEEVRQLPSPTIPYDLSLLVLAP 252 (253)
T ss_dssp EEEEEEEEECSSSSCEEEEEEEEE
T ss_pred eEEEEEECCCCCCCccEEEEEEec
Confidence 97655444344333 345665554
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=4.9e-13 Score=122.62 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~lp~~~ 164 (506)
+.+.+.++.. ++.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..++ .+.+...|... ++++
T Consensus 42 ~lLi~~l~~~--~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~-~~~l~~~~i~~~~~d~~~-~~~~ 117 (194)
T d1dusa_ 42 KILVENVVVD--KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIK-LNNLDNYDIRVVHSDLYE-NVKD 117 (194)
T ss_dssp HHHHHHCCCC--TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-HTTCTTSCEEEEECSTTT-TCTT
T ss_pred HHHHHhCCcC--CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHH-HhCCccceEEEEEcchhh-hhcc
Confidence 4456666443 4559999999999999999876 58999998876655444333 3333 35666667655 5678
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|+|+.++++.......+++++.++|||||.+++...
T Consensus 118 ~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 89999999988754322236789999999999999988653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.43 E-value=6.5e-14 Score=133.90 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=78.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccC---CC-CCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF---ST-YPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~---~~-~p~s~Dlv~~~~~ 424 (506)
..+|||||||+|+.+..+++.+. .+|+++|.|+.|++.|.+|. ....+...+.+. +. ...+||+|.|..+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred cCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 46899999999999989987553 47999999999999998873 111222223333 22 2379999999999
Q ss_pred cccccC-cCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 425 FSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+++... ..++..+|.++.|+|||||+|++....
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 987643 345678999999999999999986543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=3.2e-13 Score=131.20 Aligned_cols=125 Identities=16% Similarity=0.222 Sum_probs=92.0
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-- 148 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~-- 148 (506)
|..++..+..+....++.+++.+.+.+ +.+|||||||.|.++.++++. .|+++++|+..+..+. +.+.+.+.
T Consensus 36 ~~~~~~tL~eAQ~~k~~~~~~~l~l~~--G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~-~~~~~~g~~~ 112 (285)
T d1kpga_ 36 FERDDMTLQEAQIAKIDLALGKLGLQP--GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQ-QLVANSENLR 112 (285)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTTTCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTCCCCS
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcCCCC--CCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHH-HHHHhhhhhh
Confidence 445555666666888899999997654 459999999999999998876 3677777664443332 22223333
Q ss_pred CeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 149 PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 149 ~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+.+...|...++ ++||.|++..+++|+.... ..+++++.|+|||||.+++.+
T Consensus 113 ~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 113 SKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 3556666766664 6899999999999976433 789999999999999999843
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.42 E-value=5.1e-14 Score=128.29 Aligned_cols=127 Identities=7% Similarity=0.046 Sum_probs=90.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc--------------eeccccccCCCCC
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG--------------IYHDWCEAFSTYP 413 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~--------------~~~~~~~~~~~~p 413 (506)
...+..+|||+|||+|..+..|+++| .+|+++|.|++|++.|.++.- .+ .....+.++..++
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 34456689999999999999999987 589999999999999998721 00 0111233333333
Q ss_pred ----CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------hHHHHHHHHhcCCceEEEe
Q 010592 414 ----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 414 ----~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~~~~~~~w~~~~~ 477 (506)
.+||+|++..+|.++. ..+...++.+|.|+|||||.+++..... ..+++++++. -+|++...
T Consensus 94 ~~~~~~~D~i~~~~~l~~l~-~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~-~~~~i~~~ 171 (201)
T d1pjza_ 94 ARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMS-GNWEVTKV 171 (201)
T ss_dssp HHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSC-SSEEEEEE
T ss_pred cccccceeEEEEEeeeEecc-hhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhC-CCcEEEEE
Confidence 7899999998888654 2345789999999999999988843110 3456777653 57876554
Q ss_pred ecC
Q 010592 478 DHE 480 (506)
Q Consensus 478 ~~~ 480 (506)
+..
T Consensus 172 ~~~ 174 (201)
T d1pjza_ 172 GGQ 174 (201)
T ss_dssp EES
T ss_pred EEe
Confidence 433
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=6.3e-14 Score=136.94 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=75.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccc-----eecc--cc-ccCC-CCCC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIG-----IYHD--WC-EAFS-TYPR 414 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~-----~~~~--~~-~~~~-~~p~ 414 (506)
+.....++|||+|||+|.++..|++.+ .+|+++|.|++||+.|.++. ... .... |- .+.. .+.+
T Consensus 52 l~~~~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (292)
T d1xvaa_ 52 LRQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD 128 (292)
T ss_dssp HHHTTCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTT
T ss_pred hhhcCCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCC
Confidence 333446789999999999999999987 48999999999999987752 110 1100 00 0011 1238
Q ss_pred ceeEEEEc-cccccccCc----CCHHHHHHHHhhhccCCcEEEEE
Q 010592 415 TYDLIHAH-GLFSLYKDK----CNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 415 s~Dlv~~~-~~~~~~~~~----~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+||+|.|. .+|.|+.+. .+...+|.++.|+|||||+|+|.
T Consensus 129 ~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 129 GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp CEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 99999875 478876543 24667999999999999999994
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.41 E-value=1.4e-13 Score=125.25 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHH------------cCCCeEEEEeccccCCC-CCCC
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALE------------RGVPAVIGVLGTIKMPY-ASRA 166 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~------------~~~~~~~~~~d~~~lp~-~~~s 166 (506)
++.+|||+|||+|..+.+|+++| |+++|+|+.++..+..+.... .+....+...+...++. ...+
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 99 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 99 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccc
Confidence 45599999999999999999986 677777766554433221110 12234566666666653 3568
Q ss_pred eeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 167 FDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
||+|++..+++++.++. ..+++++.++|||||++++..
T Consensus 100 ~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 100 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred eeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999998765433 789999999999999988754
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1e-12 Score=123.55 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=84.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH-----------------Hc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL-----------------ER 146 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~-----------------~~ 146 (506)
..+++.+.+.+.. .++.+|||+|||+|..+.+|+++| |+++|+|+.++..+..+... ..
T Consensus 31 ~~l~~~~~~~l~~--~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
T d2bzga1 31 QLLKKHLDTFLKG--KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS 108 (229)
T ss_dssp HHHHHHHHHHHTT--CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred HHHHHHHHHhcCC--CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence 3344455555533 345599999999999999999996 67777776554333222111 01
Q ss_pred CCCeEEEEeccccCC-CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 147 GVPAVIGVLGTIKMP-YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 147 ~~~~~~~~~d~~~lp-~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+..+.+.+.|...++ ...++||+|+...+++|+.++. ..+++++.++|||||++++.+
T Consensus 109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 109 SGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp TSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 235667777877664 5678999999999998876655 789999999999999988864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.35 E-value=2.8e-12 Score=116.66 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
.++....+...+... ++.+|||+|||+|.++..++.. .|+++|+++.++..+..+ ++..++ .+.+.++++...
T Consensus 18 ~~eir~~il~~l~~~--~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n-~~~~gl~~~v~~~~gda~~~ 94 (186)
T d1l3ia_ 18 AMEVRCLIMCLAEPG--KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGDAPEA 94 (186)
T ss_dssp CHHHHHHHHHHHCCC--TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESCHHHH
T ss_pred hHHHHHHHHHhcCCC--CCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHH-HHHcCCCcceEEEECchhhc
Confidence 345555667777544 4559999999999999999887 489999998777554444 444554 567888888777
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++..+||+|++.....+ ...+++++.+.|||||++++...
T Consensus 95 ~~~~~~~D~v~~~~~~~~----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 95 LCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp HTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccCCcCEEEEeCcccc----chHHHHHHHHHhCcCCEEEEEee
Confidence 777789999999875433 47899999999999999998753
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.34 E-value=1.7e-12 Score=118.99 Aligned_cols=141 Identities=14% Similarity=0.159 Sum_probs=94.1
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eecc-ccccCCCC-CCcee
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHD-WCEAFSTY-PRTYD 417 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~-~~~~~~~~-p~s~D 417 (506)
+..+...+..+|||+|||+|.++..|++.+ .+|+++|.++.++..|.++ ++.. .+.. .+..+..+ +++||
T Consensus 45 i~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD 121 (194)
T d1dusa_ 45 VENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYN 121 (194)
T ss_dssp HHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEE
T ss_pred HHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCce
Confidence 334556667899999999999999998864 4899999999999999764 2211 1111 12223333 38999
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
+|.++..|++.. ..++.++.++.|+|||||.++|... ....+.+...++..-+.+...... ...+++.|+|
T Consensus 122 ~Ii~~~p~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K 193 (194)
T d1dusa_ 122 KIITNPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp EEEECCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred EEEEcccEEecc--hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence 999988875322 1246789999999999999887433 223344444555544444443322 2577888887
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.9e-12 Score=122.29 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=72.0
Q ss_pred eEEeecCcccHHHHHHHhC-----CCeEEEEeecCCCcccHHHHHhcC-----ccceeccc-ccc--------C-CCCCC
Q 010592 355 NIMDMNAGFGGFAAAIQSS-----KLWVMNVVPTLADKNTLGVIYERG-----LIGIYHDW-CEA--------F-STYPR 414 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~-----~~~~~~v~~~d~~~~~l~~~~~rg-----~~~~~~~~-~~~--------~-~~~p~ 414 (506)
+|||||||+|.++..|++. +.....++++|.|+.|++.+.++- +.....+| +.. . +.-++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 7999999999997776542 223578999999999999998862 11111111 111 1 22349
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+||+|+|.++|++. .++..+|.+|.|+|||||.++|.
T Consensus 123 ~fD~I~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 123 KWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEEccceecC---CCHHHHHHHHHhhCCCCCEEEEE
Confidence 99999999999844 47899999999999999999885
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=9.1e-13 Score=124.05 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=74.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceeccccccCCCCC-CceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~~~~~~~~p-~s~Dlv~~~~~ 424 (506)
...+|||||||+|.++.+|++.+ ..+|+++|.|+.|++.|.++.- .....++......++ .+||+|..+.+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 35689999999999999999864 3689999999999999988742 111122222223344 89999886544
Q ss_pred cc--cccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 425 FS--LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~--~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.. ...|..+.+.++.|+.|+|||||.|++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 33 23345567889999999999999999843
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.30 E-value=3.8e-12 Score=119.77 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=88.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-cceeccccccCCCCC-CceeEEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-~~~~~~~~~~~~~~p-~s~Dlv~~ 421 (506)
+...+..+|||+|||+|.++.+|++.. ....|+++|.|+.|++.+.++ .. ..+..+ +.....+. .++|++.+
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d-~~~~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGD-ANKPQEYANIVEKVDVI 147 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECC-TTCGGGGTTTCCCEEEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEe-eccCcccccccceeEEe
Confidence 444556689999999999999999852 235899999999999988875 22 223322 22222233 67777666
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------hhHHHHHHHHhcCCceEEE
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------~~~~~~~~~~~~~~w~~~~ 476 (506)
.+.+. +..+...++.++.|+|||||.++|.+.. ...+++.+.+++.++++..
T Consensus 148 ~~~~~---~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 148 YEDVA---QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp EECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEE
T ss_pred ecccc---chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence 44554 5667788999999999999999996422 1446677788888998653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=9.1e-13 Score=128.54 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=77.1
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCC-----eEEEEeccc--
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP-----AVIGVLGTI-- 158 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~-----~~~~~~d~~-- 158 (506)
+.+.+.+.+... .+.+|||||||+|.++..|++++ |+++|+|+.|+..+...... .+.. ......+..
T Consensus 44 ~~~~l~~~l~~~--~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~ 120 (292)
T d1xvaa_ 44 YKAWLLGLLRQH--GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWN-RRKEPAFDKWVIEEANWLTL 120 (292)
T ss_dssp HHHHHHHHHHHT--TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTTSHHHHTCEEEECCGGGH
T ss_pred HHHHHHHHhhhc--CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHh-cccccccceeeeeecccccc
Confidence 334444555322 34589999999999999999984 88999998887655443332 2222 233333432
Q ss_pred --cCCCCCCCeeEEEEcC-cccccCC------ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 159 --KMPYASRAFDMAHCSR-CLIPWGA------NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 --~lp~~~~sfDlV~~~~-~l~~~~~------~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+|. .++||+|+|.. ++.|+.. +...+|+++.|+|||||+|++...
T Consensus 121 ~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 121 DKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp HHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 2333 46899999864 6667543 235799999999999999999754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3e-13 Score=128.90 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=80.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCe----------------
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPA---------------- 150 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~---------------- 150 (506)
..+.+.+.....++.+|||||||+|.++..++.. .|+++|+|+.++..++..... .....
T Consensus 39 ~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 117 (257)
T d2a14a1 39 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK-EPGAYDWTPAVKFACELEGNS 117 (257)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHTTCG
T ss_pred HHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhh-ccccchhhhHHHHHHHhcccc
Confidence 4445544433445679999999999988777765 489999998887655443322 11110
Q ss_pred ---------------EEEEe----ccccCCCCCCCeeEEEEcCcccccCCC---hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 151 ---------------VIGVL----GTIKMPYASRAFDMAHCSRCLIPWGAN---DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 151 ---------------~~~~~----d~~~lp~~~~sfDlV~~~~~l~~~~~~---~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..... +....+++.++||+|++.++++|.... ...+++++.++|||||+|++.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 118 GRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp GGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred chHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 01111 112346778999999999999887643 357899999999999999997643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.28 E-value=3.5e-12 Score=117.71 Aligned_cols=99 Identities=10% Similarity=0.164 Sum_probs=78.2
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010592 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
..|||||||+|.++..|++. .++++|+++..+..+... +.+.++ ++.+..+|+..+. ++++++|.|++.+..
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~-~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQK-VKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHH-HHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 48999999999999999876 489999998777555544 444454 4777888887665 789999999988765
Q ss_pred cccCCCh--------HHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGAND--------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~--------~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|.... ..+|+++.|+|||||.|++.+
T Consensus 110 -P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 -PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred -ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 554432 379999999999999999975
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=7.1e-12 Score=116.54 Aligned_cols=109 Identities=9% Similarity=-0.008 Sum_probs=80.9
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
.....+.+.+.+.+ +.+|||||||+|+++..|++. .|+++|+++..+..+..+.......+..+...|....+
T Consensus 62 ~~~a~~l~~l~l~~--g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~ 139 (213)
T d1dl5a1 62 SLMALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV 139 (213)
T ss_dssp HHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred hhhHHHHHhhhccc--cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence 34455667775544 559999999999999988764 38999999877765555444433345666677777777
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+++||+|++..++.+.. .++.+.|||||.|++..
T Consensus 140 ~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred ccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 7778999999998876642 45778899999999864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.8e-12 Score=122.00 Aligned_cols=113 Identities=14% Similarity=0.041 Sum_probs=79.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc--cC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~--~l 160 (506)
..+.+.+++.+. ..+.+|||||||+|..+..+++. .++++|+++.++..+. +.+...+..+.....+.. ..
T Consensus 40 ~~~~~~la~~~~---~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~ 115 (229)
T d1zx0a1 40 TPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDVAP 115 (229)
T ss_dssp HHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHHhhc---cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHH-HHhhhccccccccccccccccc
Confidence 455566666663 23558999999999999999876 4889999886664443 233333444555555543 34
Q ss_pred CCCCCCeeEEEE-----cCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 161 PYASRAFDMAHC-----SRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 161 p~~~~sfDlV~~-----~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++++++||.|+. ...++|+ .+...+++++.|+|||||+|++.
T Consensus 116 ~~~~~~fD~i~fD~~~~~~~~~~~-~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 116 TLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccceeecccccccccccc-cCHHHHHHHHHHHcCCCcEEEEE
Confidence 577889999984 3444443 34578999999999999999874
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.26 E-value=7.2e-12 Score=115.61 Aligned_cols=118 Identities=9% Similarity=0.008 Sum_probs=85.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC----CCC-CceeEEEEccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS----TYP-RTYDLIHAHGL 424 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~----~~p-~s~Dlv~~~~~ 424 (506)
..|||||||+|.++..|++.. ...+++++|.++.++..|.++ |+ .++..++.++. .++ +++|.|+..+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence 359999999999999998752 236899999999999876554 44 23333344432 244 99999998666
Q ss_pred cccccC-----cCCHHHHHHHHhhhccCCcEEEE-EeChhhHHHHHHHHhcCCce
Q 010592 425 FSLYKD-----KCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 425 ~~~~~~-----~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~~w~ 473 (506)
..+... |---+..|.++.|+|||||.|+| +|..++.+.+.+.+......
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~ 163 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLL 163 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCc
Confidence 553321 11125799999999999999988 57777888888876655544
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.6e-12 Score=123.31 Aligned_cols=102 Identities=10% Similarity=-0.032 Sum_probs=72.1
Q ss_pred CCEEEEECCCCChhHHHHhhC----------CcEEEecCccchHHHHHHHHHHcCCC-eE--EEEeccc------cCCCC
Q 010592 103 VRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALERGVP-AV--IGVLGTI------KMPYA 163 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----------~v~~vdis~~di~~~~~~~a~~~~~~-~~--~~~~d~~------~lp~~ 163 (506)
..+|||||||+|.++..|+.. .++++|+|+.++..+....+.....+ +. +...+.. ..+++
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 347999999999988877553 25677777666554444333222222 22 2222221 24567
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++||+|+|..+++| .+++..+|+++.++|+|||++++..+
T Consensus 121 ~~~fD~I~~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceeEEEEccceec-CCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 899999999999976 46789999999999999999998764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.25 E-value=7.2e-12 Score=119.83 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=94.8
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCCCceeE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYPRTYDL 418 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p~s~Dl 418 (506)
++..+...+.++|||||||+|.++..|+++. ..++++.+|.+ ++++.+.++ |+...+.....+ +...|..||+
T Consensus 73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~ 150 (256)
T d1qzza2 73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVELA-GPAERARRRFADAGLADRVTVAEGDFFKPLPVTADV 150 (256)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEE
T ss_pred HHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecCh-HHHHHHHHHHhhcCCcceeeeeeeeccccccccchh
Confidence 3334555678899999999999999998852 23688999984 888877654 442222222233 3345678999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---------------------------hHHHHHHHHhcCC
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------------------EIIKVKKIVGGMR 471 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------------------~~~~~~~~~~~~~ 471 (506)
|++.++|+++.+ .+...+|.++.|+|||||+|+|.|... ..+++++++++.+
T Consensus 151 v~~~~vLh~~~d-~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AG 229 (256)
T d1qzza2 151 VLLSFVLLNWSD-EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAG 229 (256)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTT
T ss_pred hhccccccccCc-HHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCC
Confidence 999999985431 234578999999999999999976421 2467889999999
Q ss_pred ceEEEee
Q 010592 472 WDTKMVD 478 (506)
Q Consensus 472 w~~~~~~ 478 (506)
|++....
T Consensus 230 f~~~~~~ 236 (256)
T d1qzza2 230 LALASER 236 (256)
T ss_dssp EEEEEEE
T ss_pred CceeEEE
Confidence 9876543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.24 E-value=2.2e-11 Score=112.84 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=70.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCC---ceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPR---TYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~---s~Dlv~ 420 (506)
+...+..+|||+|||+|.++.+|++... ...|+++|.|+.|++.+.++ +.+..+..-+...+.++. .+|+|+
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 4444556899999999999999987421 23799999999999977664 333233222233333444 444544
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+ ...+..+...+|.|+.|+|||||+++|.+
T Consensus 131 ~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 131 Q-----DIAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp E-----CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred e-----cccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 3 22355577889999999999999999965
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.24 E-value=2.6e-11 Score=115.88 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=84.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc---CCCeEEEEeccccCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKMP 161 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~---~~~~~~~~~d~~~lp 161 (506)
..|..++.+.+ +.+|||+|||+|+++..|+.. .++++|+++.++..+..++.... ..+..+.+.|....+
T Consensus 86 s~Ii~~l~i~P--G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 86 AQIVHEGDIFP--GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHhCCCC--CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 45666665554 559999999999999999875 38899998866655544433321 235778888888889
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++++||.|++ + .+++..++.++.++|||||.+++..|..
T Consensus 164 ~~~~~fDaV~l-----d-lp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----D-MLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----E-SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccCCCcceEEE-----e-cCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 99999999986 3 2567789999999999999999887744
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.23 E-value=1.3e-11 Score=112.18 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=89.3
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCcee
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYD 417 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~D 417 (506)
+..+...+..+|||+|||+|.++..|+... ..|+++|.+++|++.|.++ |+...+...+.+ +..-...||
T Consensus 26 l~~l~~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D 102 (186)
T d1l3ia_ 26 MCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID 102 (186)
T ss_dssp HHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred HHhcCCCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcC
Confidence 334556667789999999999999998864 4799999999999999875 442222222222 222338999
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEE
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~ 475 (506)
+|.+.... ..++.++.++.+.|||||++++.... +....+.+.+...+|...
T Consensus 103 ~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 103 IAVVGGSG------GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp EEEESCCT------TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEeCcc------ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 99985432 35678999999999999999998753 456667777888777644
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.23 E-value=1.5e-11 Score=117.28 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=76.6
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~ 164 (506)
.+.+.++.. ...+|||||||+|.++..++++ .++++|+ +.++..+....+ +.+. .+.+...|... +. .
T Consensus 71 ~~~~~~d~~--~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~rv~~~~~D~~~-~~-~ 144 (253)
T d1tw3a2 71 APAAAYDWT--NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK-DEGLSDRVDVVEGDFFE-PL-P 144 (253)
T ss_dssp HHHHHSCCT--TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH-HTTCTTTEEEEECCTTS-CC-S
T ss_pred HHHhhcCCc--cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHH-Hhhcccchhhccccchh-hc-c
Confidence 344444433 3459999999999999999876 3566777 445544443333 3333 46777777643 22 3
Q ss_pred CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+||+|++..+++||.++. ..+|+++.++|||||+|++..
T Consensus 145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence 5799999999998885433 578999999999999999865
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.22 E-value=1.8e-11 Score=114.66 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=91.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccCCCCCCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAFSTYPRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~~~~p~s~Dlv~ 420 (506)
+...+..+|||+|||+|.++.+|++.-.....|+++|.++.|++.+.++ +.+..+..-. +.++.....+|+|+
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEE
Confidence 4445567899999999999999997411235899999999999977665 2222111111 11222337899988
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC----------hhhHHHHHHHHhcCCceEE-EeecCCCCCCCeEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE----------VDEIIKVKKIVGGMRWDTK-MVDHEDGPLVPEKI 489 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~----------~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~ 489 (506)
+. +. +..+...++.++.|+|||||.++|... .....+++++++ -++++. .++.+ .-..+-.+
T Consensus 149 ~d--~~---~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~-~gf~iie~i~L~-p~~~~H~~ 221 (227)
T d1g8aa_ 149 ED--VA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELS-EYFEVIERLNLE-PYEKDHAL 221 (227)
T ss_dssp EC--CC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHH-TTSEEEEEEECT-TTSSSEEE
T ss_pred EE--cc---ccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHH-cCCEEEEEEcCC-CCCCceEE
Confidence 73 22 344567799999999999999999632 123344555544 478754 33332 11234578
Q ss_pred EEEEec
Q 010592 490 LVAVKQ 495 (506)
Q Consensus 490 l~~~k~ 495 (506)
+++||+
T Consensus 222 vv~rK~ 227 (227)
T d1g8aa_ 222 FVVRKT 227 (227)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 889986
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.20 E-value=1.1e-11 Score=114.85 Aligned_cols=100 Identities=12% Similarity=0.016 Sum_probs=71.8
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC---CCeeEEEE
Q 010592 100 NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS---RAFDMAHC 172 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~---~sfDlV~~ 172 (506)
-.++.+|||+|||+|..+..|++. .|+++|+++.++..+. +.+..++ ...+...+....+... ..+|+|++
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhccC-CceEEEeeccCccccccccceEEEEEe
Confidence 345569999999999999998874 3999999998886544 4454443 5666666765544333 35666655
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +.| ..+...++.++.++|||||++++..
T Consensus 132 ~--~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 132 D--IAQ-KNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp C--CCS-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--ccC-hhhHHHHHHHHHHHhccCCeEEEEE
Confidence 3 223 3445889999999999999999874
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.19 E-value=3.4e-11 Score=110.95 Aligned_cols=101 Identities=11% Similarity=0.103 Sum_probs=77.8
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCccc
Q 010592 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCLI 177 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l~ 177 (506)
..|||||||+|.++..+++. .++++|+++..+..+..+.....-.++.+...|+..+. ++++++|.|++.+.-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd- 111 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD- 111 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC-
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc-
Confidence 48999999999999999876 48899998877765554443333334777888877664 788999999987653
Q ss_pred ccCCCh--------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~--------~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|.... ..+|+++.++|||||.|++.+.
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 654432 4799999999999999999753
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.18 E-value=3.3e-11 Score=115.17 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=74.4
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~ 164 (506)
.+.+.++.. ..++|||||||+|.++..|+++ .++++|+ +.++..+. +...+.+. .+.+...+... +.+
T Consensus 72 ~~~~~~d~~--~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-~~~~~~~~~~ri~~~~~d~~~-~~p- 145 (256)
T d1qzza2 72 APADAYDWS--AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERAR-RRFADAGLADRVTVAEGDFFK-PLP- 145 (256)
T ss_dssp HHHHTSCCT--TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCS-
T ss_pred HHHhcCCCc--cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHH-HHHhhcCCcceeeeeeeeccc-ccc-
Confidence 344444333 3458999999999999999986 3677787 43443333 33333333 24555555432 444
Q ss_pred CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+||+|++.+++|+|.++. ..+|+++.++|||||.|++..
T Consensus 146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence 4699999999999986533 578999999999999999875
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.2e-11 Score=118.59 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=77.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC------------------
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV------------------ 148 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~------------------ 148 (506)
..+.+.+......+.+|||||||+|.+...++.. .|+++|+|+.++..+........+.
T Consensus 42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 121 (263)
T d2g72a1 42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGE 121 (263)
T ss_dssp HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCC
T ss_pred HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccc
Confidence 4444544333445679999999999887655543 4999999998776554322111100
Q ss_pred ------------CeEEEEeccc------cCCCCCCCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcC
Q 010592 149 ------------PAVIGVLGTI------KMPYASRAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 149 ------------~~~~~~~d~~------~lp~~~~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p 205 (506)
-......|.. ..+++.++||+|++.+++++...+. ..+++++.++|||||+|++.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 122 CWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp CHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 0011222331 2234567899999999998876553 6789999999999999999764
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.5e-11 Score=115.80 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=82.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHc--CCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~--~~~~~~~~~d~~~l 160 (506)
+.|.++|.+.... .++.+|||||||+|.++..+++.| |+++|.++.+. .+. +..... ...+.+...+..++
T Consensus 21 ~~y~~ai~~~~~~--~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~-~~~~~~~~~~~i~~~~~~~~~l 96 (311)
T d2fyta1 21 ESYRDFIYQNPHI--FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAM-DIIRLNKLEDTITLIKGKIEEV 96 (311)
T ss_dssp HHHHHHHHHCGGG--TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHH-HHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhcccc--CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHH-HHHHHhCCCccceEEEeeHHHh
Confidence 5666666655432 235589999999999999998863 89999988643 222 333333 33477788888999
Q ss_pred CCCCCCeeEEEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEE
Q 010592 161 PYASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~ 202 (506)
+++..+||+|+|....++..... ..++....++|||||+++-
T Consensus 97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99989999999976654433322 5778888999999999974
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.16 E-value=2.6e-11 Score=113.91 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=71.8
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCCCCeeEEEEcCc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MPYASRAFDMAHCSRC 175 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~-lp~~~~sfDlV~~~~~ 175 (506)
.++.+|||||||+|.++..|++. .|+++|+|+.++..+. +.+..+ ........+... .++.+..+|++++...
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~~-~ni~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAER-ENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhhh-cccceEEEeeccCcccccccceeEEeecc
Confidence 45669999999999999999875 3899999998775433 334333 334445555433 2345566776665544
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++ .++...++.++.+.|||||+++++.
T Consensus 151 ~~~-~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 151 VAQ-PNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CCS-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-hHHHHHHHHHHHHhcccCceEEEEe
Confidence 544 4556889999999999999999874
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.16 E-value=2.8e-11 Score=111.59 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=84.2
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCC-CceeEEEEccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYP-RTYDLIHAHGL 424 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p-~s~Dlv~~~~~ 424 (506)
..|||||||+|.++..|++.. ...+++++|.++.++..|.++ ++ .+++..+.+ +. .++ .++|.|++.+-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence 359999999999999998752 236899999999999987665 33 222222222 32 245 99999998443
Q ss_pred cccc-----cCcCCHHHHHHHHhhhccCCcEEEE-EeChhhHHHHHHHHhcCCceEE
Q 010592 425 FSLY-----KDKCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 425 ~~~~-----~~~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
-... ..|---...|.++.|+|||||.|+| +|..++.+.+...+....+...
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 3321 1121126799999999999999988 6777777777777776677644
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=9.1e-11 Score=109.71 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=79.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-----CCCeEEEEecccc
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIK 159 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~-----~~~~~~~~~d~~~ 159 (506)
..+.+.|...-.++.+|||||||+|+.+..|++. .|+++|+++.++..+...+.+.. .....+...|...
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 143 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence 4556665323345669999999999998888764 48999998876665554443321 2346677788888
Q ss_pred CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+.+.++||.|++..++.+. + .++.+.|||||+|++..
T Consensus 144 ~~~~~~~fD~I~~~~~~~~i-p------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVV-P------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSC-C------HHHHHTEEEEEEEEEEE
T ss_pred ccchhhhhhhhhhhcchhhc-C------HHHHhhcCCCcEEEEEE
Confidence 77788899999999887553 2 46789999999999865
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=9.9e-11 Score=115.23 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=81.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
+.|.++|.+.... .++.+|||||||+|.++..+++.| |+++|.++. . ..+.+.+...+.. +.+...+...+
T Consensus 19 ~~y~~ai~~~~~~--~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~-~~a~~~~~~n~~~~~v~~~~~~~~~~ 94 (316)
T d1oria_ 19 LTYRNSMFHNRHL--FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-S-DYAVKIVKANKLDHVVTIIKGKVEEV 94 (316)
T ss_dssp HHHHHHHHTCHHH--HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-H-HHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhcccc--CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-H-hhhhhHHHHhCCccccceEeccHHHc
Confidence 4455555433211 134589999999999999988863 889999874 3 3333444444443 77788889999
Q ss_pred CCCCCCeeEEEEcCcccccCC--ChHHHHHHHHHhcCCCeEEEE
Q 010592 161 PYASRAFDMAHCSRCLIPWGA--NDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~--~~~~~l~e~~rvLkPGG~li~ 202 (506)
+++.++||+|++..+.+.... ....++..+.|+|||||.++-
T Consensus 95 ~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 95 ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 999999999999766544332 337899999999999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=9.6e-11 Score=115.92 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=81.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
..|.+.|.+.... .++.+|||||||+|.++..+++.+ |+++|.++ ++ ..+.+.+...+. .+.+...+...+
T Consensus 24 ~~y~~aI~~~~~~--~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~~l 99 (328)
T d1g6q1_ 24 LSYRNAIIQNKDL--FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp HHHHHHHHHHHHH--HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhcccc--CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehhhc
Confidence 4454555443321 234599999999999999988874 88999886 33 333344444443 467788889999
Q ss_pred CCCCCCeeEEEEcCcccccCC--ChHHHHHHHHHhcCCCeEEEE
Q 010592 161 PYASRAFDMAHCSRCLIPWGA--NDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~--~~~~~l~e~~rvLkPGG~li~ 202 (506)
++++++||+|++..+.++... ....++.++.|+|||||.++=
T Consensus 100 ~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 999999999999766544332 337889999999999999863
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.09 E-value=1.6e-10 Score=109.54 Aligned_cols=107 Identities=8% Similarity=0.098 Sum_probs=74.7
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~-~~~~~~~~d~~~lp~~~ 164 (506)
.|...+.+.+ +.+|||+|||+|.++..|++. .++++|+++..+..+..++....+ .++.+...|.... +++
T Consensus 76 ~Ii~~l~i~p--G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~ 152 (250)
T d1yb2a1 76 YIIMRCGLRP--GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISD 152 (250)
T ss_dssp -----CCCCT--TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCS
T ss_pred HHHHHcCCCC--cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccc
Confidence 3455555544 459999999999999998864 388999987655444444433222 3466676776554 567
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|++. .+++..++.++.++|||||+|++..|.
T Consensus 153 ~~fD~V~ld------~p~p~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 153 QMYDAVIAD------IPDPWNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp CCEEEEEEC------CSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred ceeeeeeec------CCchHHHHHHHHHhcCCCceEEEEeCC
Confidence 899999874 244667899999999999999998764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=5.9e-11 Score=110.18 Aligned_cols=103 Identities=15% Similarity=0.024 Sum_probs=72.0
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccceeccccccCCC-CC--Ccee
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCEAFST-YP--RTYD 417 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~~~~~~~~~~~~-~p--~s~D 417 (506)
++..+...+..+|||+|||+|.+++.|++.......|+++|.++++++.|.++. .+......+.+... ++ ++||
T Consensus 67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD 146 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYD 146 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchh
Confidence 444455556679999999999999988763212257999999999999988862 12222222333322 23 7899
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|++..++.+.. .++.+.|||||+|++-.
T Consensus 147 ~I~~~~~~~~~p---------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 147 VIFVTVGVDEVP---------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred hhhhhccHHHhH---------HHHHHhcCCCcEEEEEE
Confidence 999988776432 46778999999999843
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.07 E-value=9.7e-11 Score=111.06 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=83.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC-CceeEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP-RTYDLIH 420 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p-~s~Dlv~ 420 (506)
.+.-.+..+|||+|||+|.++.+|+..-.....|+++|.++++++.|.++ +....+.....++.. ++ ++||.|+
T Consensus 80 ~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ 159 (250)
T d1yb2a1 80 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVI 159 (250)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEE
T ss_pred HcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeee
Confidence 44445567899999999999988876311124799999999999999875 222222222233433 33 8999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCce
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~ 473 (506)
+ +-.++..+|.++.|+|||||+|++.-+. ..+.++-+.++..+|.
T Consensus 160 l--------d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 160 A--------DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205 (250)
T ss_dssp E--------CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred e--------cCCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence 7 4445567999999999999999997553 3345555556667775
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=2.5e-10 Score=109.37 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=86.2
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLI 419 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv 419 (506)
..++..+..+|||+|||+|.++.+|+..-.....|+++|.++++++.|.++ |+......-..++ ..++ ..||.|
T Consensus 97 ~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V 176 (266)
T d1o54a_ 97 MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDAL 176 (266)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEE
T ss_pred HhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeee
Confidence 344555667899999999999999976322235899999999999998775 3332222212222 2244 789988
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCCce
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~ 473 (506)
+. +-.++..+|.++.|+|||||.+++--+ .+.+.++.+.++..+|.
T Consensus 177 ~~--------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 177 FL--------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp EE--------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred Ee--------cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 76 566778899999999999999998654 34555666667778886
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.06 E-value=7.9e-11 Score=112.42 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=83.1
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc------CccceeccccccCCC--CC-Cc
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER------GLIGIYHDWCEAFST--YP-RT 415 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r------g~~~~~~~~~~~~~~--~p-~s 415 (506)
+..+...+..+|||+|||+|.++.+|+..-.....|+++|.++++++.|+++ +....++..+.++.. ++ ++
T Consensus 89 i~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~ 168 (264)
T d1i9ga_ 89 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS 168 (264)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTC
T ss_pred HHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCC
Confidence 3344555667899999999999999986311224799999999999999873 122333333444432 33 99
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhH-HHHHHHHhcCCce
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEI-IKVKKIVGGMRWD 473 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~-~~~~~~~~~~~w~ 473 (506)
||.|+. +-.++..++.++.|+|||||.+++-.+. +.+ .-++.+-...+|.
T Consensus 169 fDaV~l--------dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 169 VDRAVL--------DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp EEEEEE--------ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred cceEEE--------ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 999987 4556678999999999999999996653 223 3333332344574
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.4e-10 Score=112.06 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=73.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhcCccc---eeccccccCCCCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYERGLIG---IYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~rg~~~---~~~~~~~~~~~~p~s~Dlv~~~~~~ 425 (506)
+..+|||||||+|.++..+++.|. ..|+++|.++.|+. .+.+.+... ..+.-.++++..+..||+|.+..+.
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence 456899999999999998888763 47999999987764 333344432 3332234444444899999997777
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++......++.++..++|+|||||.++-
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eecccccccHHHHHHHHhcCCCCcEEec
Confidence 7666555577889999999999999874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=4.5e-10 Score=107.55 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=77.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-C-eEEEEeccccCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-P-AVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~-~~~~~~d~~~lp~ 162 (506)
..|..++.+.+ +.+|||+|||+|.++..|++. .++++|+++.++..+..+.. ..+. . ..+...|. ...+
T Consensus 93 ~~Ii~~l~i~p--G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~-~~g~~~~v~~~~~d~-~~~~ 168 (266)
T d1o54a_ 93 SFIAMMLDVKE--GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT-KWGLIERVTIKVRDI-SEGF 168 (266)
T ss_dssp HHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH-HTTCGGGEEEECCCG-GGCC
T ss_pred HHHHHhhCCCC--CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HhccccCcEEEeccc-cccc
Confidence 34667776554 459999999999999999864 38999999877755554443 3343 2 33333333 3346
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
....||.|+. + .+++..++.++.++|||||.|++..|..
T Consensus 169 ~~~~~D~V~~-----d-~p~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 169 DEKDVDALFL-----D-VPDPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp SCCSEEEEEE-----C-CSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred cccceeeeEe-----c-CCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 6778999875 3 3567889999999999999999887643
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=3.6e-10 Score=111.71 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=73.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccc---eeccccccCCCCCCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIG---IYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~---~~~~~~~~~~~~p~s~Dlv~~~~~~ 425 (506)
..+|||||||+|.++..+++.|. -.|+++|.+ .|+..|.+ .++.. .++.-.++++..+.+||+|.+..++
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s-~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCC-HHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 45799999999999988888763 379999998 56665544 34433 2332233444334899999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
....+...++.++.+++|+|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 777777788999999999999999886
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=8.3e-11 Score=116.39 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=85.7
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH--H-------c
Q 010592 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL--E-------R 146 (506)
Q Consensus 80 ~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~--~-------~ 146 (506)
.++.....++..+.+.+.+.+ +.+|||||||+|.++..++.. .++|+|+++.++..+...... . .
T Consensus 131 ~~~e~~~~~~~~~~~~~~l~~--~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~ 208 (328)
T d1nw3a_ 131 VYGETSFDLVAQMIDEIKMTD--DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 208 (328)
T ss_dssp CCCCCCHHHHHHHHHHSCCCT--TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred chhhhHHHHHHHHHHHcCCCC--CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 343444556677778876554 449999999999999888754 488999998766544332221 1 2
Q ss_pred CCCeEEEEeccccCCCCCCCe--eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 147 GVPAVIGVLGTIKMPYASRAF--DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 147 ~~~~~~~~~d~~~lp~~~~sf--DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..++.+..+|+..+++.+..| |+|+++. +.+ .++....|.++.|+|||||.++...
T Consensus 209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f-~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 209 HAEYTLERGDFLSEEWRERIANTSVIFVNN-FAF-GPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCSEEEECC-TTT-CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CCceEEEECcccccccccccCcceEEEEcc-eec-chHHHHHHHHHHHhCCCCcEEEEec
Confidence 345788889998888766555 6677654 334 3556789999999999999998754
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=2.7e-10 Score=112.04 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=71.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhcCccceecccc---ccCCCCCCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYERGLIGIYHDWC---EAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~rg~~~~~~~~~---~~~~~~p~s~Dlv~~~~~~~ 426 (506)
..+|||||||+|.++..+++.|. -.|+++|.++.+.. .+...++...+...+ ++++..+++||+|.+..+..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 46799999999999988888763 36899999864432 222235433333323 33443348999999977776
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.+.+...++.++.+++|+|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 666667889999999999999999874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.99 E-value=6.1e-10 Score=103.74 Aligned_cols=104 Identities=11% Similarity=0.041 Sum_probs=73.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
..+.+.+.+.+ +.+|||||||+|++++.|+.. .|+++|+++.....+.... ....++.+...|........+.|
T Consensus 60 a~ml~~L~l~~--g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~--~~~~nv~~~~~d~~~g~~~~~pf 135 (224)
T d1vbfa_ 60 IFMLDELDLHK--GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL--SYYNNIKLILGDGTLGYEEEKPY 135 (224)
T ss_dssp HHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH--TTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhhhcc--cceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHH--hcccccccccCchhhcchhhhhH
Confidence 34666775554 449999999999999988876 4888998875554433222 23345677777765544456789
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|.|++..++.+.+ ..+.+.|||||+|++-.
T Consensus 136 D~Iiv~~a~~~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 136 DRVVVWATAPTLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp EEEEESSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred HHHHhhcchhhhh-------HHHHHhcCCCCEEEEEE
Confidence 9999988775532 45668899999999853
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.95 E-value=7.1e-10 Score=103.57 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=72.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc---cCCCCCCCeeEEE
Q 010592 100 NGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KMPYASRAFDMAH 171 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~---~lp~~~~sfDlV~ 171 (506)
..++.+|||+|||+|.++..|++. .|+++|+++.++..+. +.+..++ .......+.. ..+.....+|+|+
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~~-~~~~i~~d~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEERR-NIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSCT-TEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhcC-CceEEEEECCCcccccccccceEEEE
Confidence 345669999999999999999875 3899999998775443 3443332 3444455542 3344557899998
Q ss_pred EcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... + .++...++.++.+.|||||+++++.
T Consensus 149 ~d~~--~-~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 149 EDVA--Q-PTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ECCC--S-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcc--c-cchHHHHHHHHHHhcccCCeEEEEE
Confidence 8532 2 3445789999999999999999874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=7.5e-10 Score=103.31 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=65.9
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc----cceeccccccCCC-CC--CceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL----IGIYHDWCEAFST-YP--RTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~----~~~~~~~~~~~~~-~p--~s~Dlv 419 (506)
.+..+|||+|||+|.+++.|++.......|+++|.++++++.|.++ ++ .......+.+... ++ +.||.|
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I 154 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 154 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence 4456899999999999888876311225799999999999988664 21 1122222233222 22 799999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++..++.+. ..++.+.|||||.+++-
T Consensus 155 ~~~~~~~~i---------p~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 155 HVGAAAPVV---------PQALIDQLKPGGRLILP 180 (224)
T ss_dssp EECSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred hhhcchhhc---------CHHHHhhcCCCcEEEEE
Confidence 997776632 24678999999999984
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1e-09 Score=107.77 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=75.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--------------ccceeccccccCC--
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--------------LIGIYHDWCEAFS-- 410 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--------------~~~~~~~~~~~~~-- 410 (506)
.+.-.+..+|||+|||+|.++.+|+..-.....|+++|.++++++.|.+.- ....+.....++.
T Consensus 93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~ 172 (324)
T d2b25a1 93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 172 (324)
T ss_dssp HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence 344445668999999999999999863111257999999999999987641 1111111122222
Q ss_pred --CCC-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHh--cCCceEE
Q 010592 411 --TYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVG--GMRWDTK 475 (506)
Q Consensus 411 --~~p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~--~~~w~~~ 475 (506)
.++ .+||.|+. +-.++..+|.++.|+|||||.|++--+ ...+.++-+.++ .++|...
T Consensus 173 ~~~~~~~~fD~V~L--------D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i 235 (324)
T d2b25a1 173 TEDIKSLTFDAVAL--------DMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE 235 (324)
T ss_dssp C-------EEEEEE--------CSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCCcceEee--------cCcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence 233 78999986 333444589999999999999998543 222233333233 5678633
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.9e-09 Score=104.43 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=74.6
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-----------CCCeEEEE
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-----------GVPAVIGV 154 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~-----------~~~~~~~~ 154 (506)
.|..++.+.+ +.+|||+|||+|+++..|+.. .|+++|+++.++..+..++.... ..++.+..
T Consensus 89 ~Il~~l~i~p--G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 89 MILSMMDINP--GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhCCCC--CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 4556665554 459999999999999999874 38999998876665554443311 12356666
Q ss_pred eccccCC--CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 155 LGTIKMP--YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 155 ~d~~~lp--~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.|..... +++.+||.|+.- + +++..++.++.++|||||.|++-.|..
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD-~-----p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALD-M-----LNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp SCTTCCC-------EEEEEEC-S-----SSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred cchhhcccccCCCCcceEeec-C-----cCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 7765543 457789999862 1 335568999999999999999887644
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.83 E-value=1.7e-09 Score=108.99 Aligned_cols=107 Identities=8% Similarity=0.062 Sum_probs=72.1
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcCc------------cc-eeccccccC
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL------------IG-IYHDWCEAF 409 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg~------------~~-~~~~~~~~~ 409 (506)
++..+.-++..+|||+|||+|.++..++.. + +..|+|+|.++.|++.|.++.- .+ ........+
T Consensus 208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g--~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f 285 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 285 (406)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech
Confidence 334344455568999999999998888763 2 2479999999999999987531 00 000111222
Q ss_pred CC---CC---CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 410 ST---YP---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 410 ~~---~p---~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
-. ++ ...|+|++++.. +..++...|.||.|+|||||.+|+.+.
T Consensus 286 ~~~~~~d~~~~~adVV~inn~~----f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 286 VDNNRVAELIPQCDVILVNNFL----FDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp TTCHHHHHHGGGCSEEEECCTT----CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred hhccccccccccceEEEEeccc----CchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 11 11 456788874422 334678899999999999999998664
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.83 E-value=6.2e-09 Score=96.17 Aligned_cols=108 Identities=12% Similarity=0.036 Sum_probs=75.7
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
....+.+.+.+.+ +.+|||||||+|+.++.|+.. .|+++|..+.....+..........++.+..+|........
T Consensus 66 ~~a~ml~~L~l~~--g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~ 143 (215)
T d1jg1a_ 66 MVAIMLEIANLKP--GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 143 (215)
T ss_dssp HHHHHHHHHTCCT--TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred hHHHHHHhhccCc--cceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc
Confidence 3345666675544 449999999999999988764 48899998754544443333333345777777876655567
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.||.|++..+..+. + ..+...|||||++++..
T Consensus 144 ~pfD~Iiv~~a~~~i---p----~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 144 APYDVIIVTAGAPKI---P----EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp CCEEEEEECSBBSSC---C----HHHHHTEEEEEEEEEEE
T ss_pred CcceeEEeecccccC---C----HHHHHhcCCCCEEEEEE
Confidence 889999998776443 2 33566799999999854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=1.2e-08 Score=97.60 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~ 157 (506)
...+..++...+.+. ..+.+|||+|||+|..+..++.. .++++|+|+..+.-+. +.+...++. +.+...|.
T Consensus 92 peTE~lv~~~l~~~~---~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~-~Na~~~~~~~v~~~~~d~ 167 (274)
T d2b3ta1 92 PDTECLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDW 167 (274)
T ss_dssp TTHHHHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCST
T ss_pred cchhhhhhhHhhhhc---ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH-HHHHHhCcccceeeeccc
Confidence 344666666666553 23458999999999999888764 5899999886654444 445555554 67776665
Q ss_pred ccCCCCCCCeeEEEEcCcccccCC----------Ch--------------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 158 IKMPYASRAFDMAHCSRCLIPWGA----------ND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~~~----------~~--------------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ++++++||+|+|+..+.+-.+ ++ ..++.++.+.|+|||.+++...
T Consensus 168 ~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 168 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 43 455679999999865543110 00 2578899999999999999754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.80 E-value=8.5e-09 Score=95.83 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=73.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----------CcEEEecCccchHHHHHHHHHH-----cCCCeEEEE
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALE-----RGVPAVIGV 154 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vdis~~di~~~~~~~a~~-----~~~~~~~~~ 154 (506)
..+.+.+...-.++.+|||||||+|++++.|++. .|+++|+.+..+..+..+.... ...++.+..
T Consensus 68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 3455555212234569999999999999888764 3788998876555444332211 123567777
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.|......+.+.||.|++..++.+. + ..+.+.|||||++++..
T Consensus 148 ~d~~~~~~~~~~fD~Iiv~~a~~~~-p------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 148 GDGRKGYPPNAPYNAIHVGAAAPDT-P------TELINQLASGGRLIVPV 190 (223)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSC-C------HHHHHTEEEEEEEEEEE
T ss_pred cccccccccccceeeEEEEeechhc-h------HHHHHhcCCCcEEEEEE
Confidence 8877766667789999998877443 2 35678999999998854
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.8e-09 Score=106.54 Aligned_cols=107 Identities=10% Similarity=0.034 Sum_probs=74.0
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----------c-cceeccccccCCC
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----------L-IGIYHDWCEAFST 411 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----------~-~~~~~~~~~~~~~ 411 (506)
++..+...+-.+|||+|||+|.++..++... ...+++++|.++.|++.|.+.. + .+.+...+.++..
T Consensus 143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~ 221 (328)
T d1nw3a_ 143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 221 (328)
T ss_dssp HHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence 4444444555689999999999988776531 1357999999999999886531 1 1233344566655
Q ss_pred CC---Cc--eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 412 YP---RT--YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 412 ~p---~s--~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.| .. .|+|.+++. . +..++...|.||.|+|||||.+|+.+
T Consensus 222 ~~~~~~~~~advi~~~~~-~---f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 222 EEWRERIANTSVIFVNNF-A---FGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHHHHCSEEEECCT-T---TCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccccccCcceEEEEcce-e---cchHHHHHHHHHHHhCCCCcEEEEec
Confidence 44 33 367777432 2 34467889999999999999999854
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.78 E-value=4.8e-09 Score=97.54 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=70.6
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCC-CCC--CceeE
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFS-TYP--RTYDL 418 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~-~~p--~s~Dl 418 (506)
+++..+...+..+|||+|||+|.+++.|+... ..|+++|.+++++..|.++. ....+.....+.. .++ ..||.
T Consensus 61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 34454555566789999999999999988854 57999999999999888762 1222222233332 233 67999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|++..+..+. ..++.+.|||||+|++-
T Consensus 138 Iiv~~a~~~i---------p~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTL---------LCKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEESSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred HHhhcchhhh---------hHHHHHhcCCCCEEEEE
Confidence 9997776532 23456789999999983
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=4.1e-09 Score=106.13 Aligned_cols=119 Identities=10% Similarity=0.056 Sum_probs=77.4
Q ss_pred hhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH------cC---C
Q 010592 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE------RG---V 148 (506)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~------~~---~ 148 (506)
+.-...++..+.+.+.+.++ .+|||||||+|..+..++.. .++|+|+++.++..+..+.... .+ .
T Consensus 198 GEl~~~~i~~Il~~l~Lkpg--d~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~ 275 (406)
T d1u2za_ 198 GELLPNFLSDVYQQCQLKKG--DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275 (406)
T ss_dssp CCBCHHHHHHHHHHTTCCTT--CEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred ccCCHHHHHHHHHHhCCCCC--CEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 33345567778888866544 49999999999999988865 4889999987765554433321 11 1
Q ss_pred CeEEE-EeccccCCCC---CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 149 PAVIG-VLGTIKMPYA---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 149 ~~~~~-~~d~~~lp~~---~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...+. ..+....++. -..+|+|+++. +++ .++....|.++.|+|||||.++.+.
T Consensus 276 ~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f-~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 276 NVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLF-DEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTC-CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cceeeeeechhhccccccccccceEEEEec-ccC-chHHHHHHHHHHHhcCCCcEEEEec
Confidence 22222 2222222211 13578888764 323 4556889999999999999998754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.72 E-value=4e-09 Score=95.98 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=36.3
Q ss_pred CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+.+.||+|+|.++|+++.+.. ..+++.+.+.|+|||+|++-.
T Consensus 128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 3457899999999998876544 689999999999999998853
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=4.5e-08 Score=92.97 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=85.5
Q ss_pred CCeEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHH
Q 010592 69 GNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE 145 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~ 145 (506)
+-.|.+.-....|..+-..-...+.+.+ .++.+|||+|||+|.++..++.+ .|+++|+++..+ +.+.+.+..
T Consensus 78 g~~~~~d~~~~~f~~~~~~er~ri~~~~----~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~-~~~~~N~~~ 152 (260)
T d2frna1 78 GIKYKLDVAKIMFSPANVKERVRMAKVA----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHL 152 (260)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHC----CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHH
T ss_pred CeeEEeccccccEecCCHHHHHHHHhhc----CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHH-HHHHHHHHH
Confidence 3344444444555555443344566666 24569999999999999988865 489999998655 344445555
Q ss_pred cCCC--eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 146 RGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 146 ~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+++. +.+..+|+..++. .+.||.|++... .....++.++.++|+|||.+.+.
T Consensus 153 n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p-----~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 153 NKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp TTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred hCCCceEEEEEcchHHhcc-CCCCCEEEECCC-----CchHHHHHHHHhhcCCCCEEEEE
Confidence 5553 5667778776653 568999998642 22356889999999999998764
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.62 E-value=5.6e-08 Score=91.46 Aligned_cols=141 Identities=12% Similarity=0.087 Sum_probs=92.0
Q ss_pred HhhhcC-CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc-CCCCCCceeEEEE
Q 010592 344 INRLLD-SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-FSTYPRTYDLIHA 421 (506)
Q Consensus 344 ~~~~~~-~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~-~~~~p~s~Dlv~~ 421 (506)
++.... ..+.++|||+|||+|.++.+++++. ..++++..|.+ .+++.+ +....+.....+ |...| ..|++..
T Consensus 72 l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~---~~~~ri~~~~gd~~~~~p-~~D~~~l 145 (244)
T d1fp1d2 72 MLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QVIENA---PPLSGIEHVGGDMFASVP-QGDAMIL 145 (244)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTTC---CCCTTEEEEECCTTTCCC-CEEEEEE
T ss_pred HHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hhhhcc---CCCCCeEEecCCcccccc-cceEEEE
Confidence 344344 4678999999999999999998752 23577888875 444322 221111111222 33344 4599999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh--------h---------------------hHHHHHHHHhcCCc
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------D---------------------EIIKVKKIVGGMRW 472 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------~---------------------~~~~~~~~~~~~~w 472 (506)
.++|+.+. ..+...+|+.+.+.|+|||.++|.|.+ . ..++.++++++.+|
T Consensus 146 ~~vLh~~~-de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF 224 (244)
T d1fp1d2 146 KAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGF 224 (244)
T ss_dssp ESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred ehhhhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCC
Confidence 99998543 123457999999999999999997631 0 24678899999999
Q ss_pred eEEEe-ecCCCCCCCeEEEEEEe
Q 010592 473 DTKMV-DHEDGPLVPEKILVAVK 494 (506)
Q Consensus 473 ~~~~~-~~~~~~~~~~~~l~~~k 494 (506)
+...+ .... ...-++=++|
T Consensus 225 ~~v~v~~~~~---~~~~viE~~K 244 (244)
T d1fp1d2 225 SKFQVACRAF---NSLGVMEFYK 244 (244)
T ss_dssp SEEEEEEEET---TTEEEEEEEC
T ss_pred CceEEEecCC---CCEEEEEEeC
Confidence 85533 2221 2345666665
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.61 E-value=2.7e-08 Score=97.49 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=81.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-------CCCCCCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-------FSTYPRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-------~~~~p~s~Dlv~ 420 (506)
...+|||++||+|+|+.+++.. ...|+++|.|+.+++.|.+. |+ ..+...+.+ +.....+||+|.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi 220 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVV 220 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEE
Confidence 3578999999999999998763 36899999999999988764 33 111112222 222347999999
Q ss_pred EccccccccCcCCH-------HHHHHHHhhhccCCcEEEEEeCh------hhHHHHHHHHhcCCceEEEee
Q 010592 421 AHGLFSLYKDKCNI-------EDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 421 ~~~~~~~~~~~~~~-------~~~l~e~~RvLrPgG~~ii~d~~------~~~~~~~~~~~~~~w~~~~~~ 478 (506)
++-=-... ...++ ..++..+.++|||||.|++..-. ...+.+.+.+...+.++.++.
T Consensus 221 ~DpP~~~~-~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~ 290 (318)
T d1wxxa2 221 LDPPAFAK-GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 290 (318)
T ss_dssp ECCCCSCC-STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EcCCcccc-chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 84311100 11122 35788999999999999996432 244555556667777766554
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=5.6e-08 Score=92.29 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=83.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC--CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP--RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p--~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.|+..++..+. .+|+++|.++.+++.+.+. |+-..+...+.+.-.++ +.||.|..+..
T Consensus 108 g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p-- 183 (260)
T d2frna1 108 DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV-- 183 (260)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC--
T ss_pred ccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC--
Confidence 46799999999999998887652 4799999999999877654 44232333344544444 78999987321
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeCh-------hhHHHHHHHHhcCCceEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------~~~~~~~~~~~~~~w~~~~~ 477 (506)
..-...|.+..++|||||++++.+.. ...+.++++++..++++...
T Consensus 184 -----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 184 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred -----CchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 12245788889999999999874321 24577888888889987654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=6.9e-08 Score=92.16 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=89.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEccccc-
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGLFS- 426 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv~~~~~~~- 426 (506)
.+|||+|||+|-.+..|+... ....|+++|.|+..++.|.+- ++ ..++....++ ..++ ..||+|.|+-=+-
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~~~~fDlIvsNPPYi~ 187 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQFAMIVSNPPYID 187 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred cceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccCCCceeEEEecchhhh
Confidence 459999999999999887632 235899999999999988764 22 1222222222 2234 6999999963221
Q ss_pred ------------cccCcC---------CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCce-EEEeecCCCCC
Q 010592 427 ------------LYKDKC---------NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD-TKMVDHEDGPL 484 (506)
Q Consensus 427 ------------~~~~~~---------~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~ 484 (506)
+..+.. .+..++.+..+.|+|||.+++--.....+.+.+++++.+|. +.+.. |- .
T Consensus 188 ~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~k--Dl-~ 264 (274)
T d2b3ta1 188 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCR--DY-G 264 (274)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEE--CT-T
T ss_pred hhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEE--CC-C
Confidence 111000 12358899999999999999965444567889999999996 32221 21 2
Q ss_pred CCeEEEEEE
Q 010592 485 VPEKILVAV 493 (506)
Q Consensus 485 ~~~~~l~~~ 493 (506)
+...++++|
T Consensus 265 g~~R~v~~r 273 (274)
T d2b3ta1 265 DNERVTLGR 273 (274)
T ss_dssp SSEEEEEEE
T ss_pred CCceEEEEe
Confidence 356777775
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=4.1e-08 Score=96.07 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc----CCCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK----MPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~----lp~~~~sfDlV~~~~ 174 (506)
.+.+|||++||+|.++.+++.. .|+++|+++..+..+. +.+..+++ +..+...|... ++...++||+|++..
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHH-HHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 3569999999999999988754 5899999987775554 44445565 46677777643 344567899999864
Q ss_pred cccccCC-Ch-------HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 175 CLIPWGA-ND-------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 175 ~l~~~~~-~~-------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
....... +. ..++..+.++|||||.|++++..
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3211111 11 25788899999999999997643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.55 E-value=1e-07 Score=93.55 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=78.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc-
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK- 159 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~- 159 (506)
......+.+.+ .++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+..+++ ...+...|...
T Consensus 133 r~~r~~~~~~~----~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~-~N~~~ngl~~~~~~~~~d~~~~ 207 (324)
T d2as0a2 133 RENRLALEKWV----QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVGSAFEE 207 (324)
T ss_dssp HHHHHHHGGGC----CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHH
T ss_pred hhHHHHHHhhc----CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHH-HHHHHcCCCccceeeechhhhh
Confidence 33334555555 23559999999999999998876 3889999987664443 44555565 35667777532
Q ss_pred ---CCCCCCCeeEEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 160 ---MPYASRAFDMAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 ---lp~~~~sfDlV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++....+||+|++......-... -..++..+.++|+|||.|++++...
T Consensus 208 ~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 208 MEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp HHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred hHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 34456789999986432111111 1357888899999999999986433
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=6.7e-08 Score=85.91 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlV~~~~~ 175 (506)
.+.+|||+|||+|.++..++.++ ++++|+++..+..+ .+.+...+....+...+... ......+||+|++...
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~-~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLL-KENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHH-HHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhh-hHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 34589999999999999888875 67788877655433 33444556666655555432 2345578999999764
Q ss_pred ccccCCChHHHHHHHH--HhcCCCeEEEEEcCCC
Q 010592 176 LIPWGANDGRYMIEVD--RVLRPGGYWVLSGPPI 207 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~--rvLkPGG~li~~~p~~ 207 (506)
+ ..+....+.++. .+|+|||++++..+..
T Consensus 120 Y---~~~~~~~l~~l~~~~ll~~~g~ivie~~~~ 150 (171)
T d1ws6a1 120 Y---AMDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp T---TSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred c---ccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence 3 223334444443 4799999999876443
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.51 E-value=1.6e-07 Score=85.01 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=77.4
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccH----HHHHHHh---CCCeEEEEeecCCCcccHHHHHhcCc-
Q 010592 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG----FAAAIQS---SKLWVMNVVPTLADKNTLGVIYERGL- 398 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~----~~~~l~~---~~~~~~~v~~~d~~~~~l~~~~~rg~- 398 (506)
|-.|...|+..... ++ ..++--+|+++|||+|. +|..|.+ ...+...++++|.++.+|+.|.+--.
T Consensus 5 FFRd~~~f~~L~~~---~~---~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~ 78 (193)
T d1af7a2 5 FFREAHHFPILAEH---AR---RRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYR 78 (193)
T ss_dssp TTTTTTHHHHHHHH---HH---HSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEE
T ss_pred CcCCcHHHHHHHHH---Hh---ccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCccc
Confidence 44455566543332 11 22334479999999998 3433433 12244789999999999998863210
Q ss_pred -------cc------------------------------eeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHH
Q 010592 399 -------IG------------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEM 441 (506)
Q Consensus 399 -------~~------------------------------~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~ 441 (506)
.. ..+......+...+.||+|.|-+||.+.. ......+|..+
T Consensus 79 ~~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l 157 (193)
T d1af7a2 79 LSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRF 157 (193)
T ss_dssp GGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHH
T ss_pred HHHHhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-HHHHHHHHHHH
Confidence 00 00000111111127899999999998654 33446899999
Q ss_pred hhhccCCcEEEEEeC
Q 010592 442 DRILRPEGAIIIRDE 456 (506)
Q Consensus 442 ~RvLrPgG~~ii~d~ 456 (506)
++.|+|||+|+|-..
T Consensus 158 ~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 158 VPLLKPDGLLFAGHS 172 (193)
T ss_dssp GGGEEEEEEEEECTT
T ss_pred HHHhCCCcEEEEecC
Confidence 999999999999644
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.49 E-value=2.1e-07 Score=84.39 Aligned_cols=110 Identities=13% Similarity=0.065 Sum_probs=71.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
..++|||+|||+|.++..++..+. -+|+++|.++.+++.|++.. ..+...+.++..+++.||+|.++-=|......
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N~--~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~~~ 123 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNC--GGVNFMVADVSEISGKYDTWIMNPPFGSVVKH 123 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHC--TTSEEEECCGGGCCCCEEEEEECCCC------
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHcc--ccccEEEEehhhcCCcceEEEeCcccchhhhh
Confidence 356899999999999877777663 47999999999999998753 23334467777888999999997666432223
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhc
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGG 469 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~ 469 (506)
.+.. + +...+.+++.++..-.....+.++..+..
T Consensus 124 ~D~~--f--l~~a~~~~~~iy~ih~~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 124 SDRA--F--IDKAFETSMWIYSIGNAKARDFLRREFSA 157 (197)
T ss_dssp -CHH--H--HHHHHHHEEEEEEEEEGGGHHHHHHHHHH
T ss_pred chHH--H--HHHHHhcCCeEEEehhhhHHHHHHHHhhc
Confidence 3422 1 23345566665554444455556655444
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.49 E-value=1.5e-07 Score=88.47 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=72.8
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 89 ~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+.+.+.++.. ....+|||||||+|.++..++++ .++..|+. ..++.+. ....+.+...|... +.|
T Consensus 69 ~~~l~~~~~~f-~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp------~vi~~~~-~~~ri~~~~gd~~~-~~p- 138 (244)
T d1fp1d2 69 MKRMLEIYTGF-EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP------QVIENAP-PLSGIEHVGGDMFA-SVP- 138 (244)
T ss_dssp HHHHHHHCCTT-TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH------HHHTTCC-CCTTEEEEECCTTT-CCC-
T ss_pred HHHHHHhcccc-cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch------hhhhccC-CCCCeEEecCCccc-ccc-
Confidence 34555555421 33469999999999999999886 35556652 2222111 12346666666542 444
Q ss_pred CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..|++++.+++|+|.++. ..+|+++.+.|+|||.+++..
T Consensus 139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 459999999999986654 689999999999999999964
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.44 E-value=1.1e-07 Score=82.85 Aligned_cols=100 Identities=9% Similarity=-0.001 Sum_probs=67.5
Q ss_pred CCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc-CCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK-MPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~-lp~~~~sfDlV~~~~~ 175 (506)
.+.+|||+|||+|.++...+.++ |+++|.++..+... .+.+...+.. ..+...|+.. ++...++||+|++...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~-~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAII-QDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHH-HHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhh-hhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 46699999999999998887774 78999987554332 3344444443 5666666644 3455788999998643
Q ss_pred ccccCCCh-HHHHHHHH--HhcCCCeEEEEEcC
Q 010592 176 LIPWGAND-GRYMIEVD--RVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~~-~~~l~e~~--rvLkPGG~li~~~p 205 (506)
+ .... ...+..+. ++|+|||.+++..+
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 2 2111 45555553 57999999999754
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.42 E-value=2.5e-07 Score=90.62 Aligned_cols=122 Identities=10% Similarity=0.013 Sum_probs=78.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-------CCCCCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-------STYPRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-------~~~p~s~Dlv~~ 421 (506)
..+|||++||+|+|+.+++..|. ..|+++|.++.+++.|.+. |+...++..+.+. +....+||+|.+
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 45899999999999999988763 4799999999999988764 4433333333332 123479999998
Q ss_pred ccccccccCcC-------CHHHHHHHHhhhccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEe
Q 010592 422 HGLFSLYKDKC-------NIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 422 ~~~~~~~~~~~-------~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~ 477 (506)
+---.. .+.- ....++....++|||||.|++..... ..+.+.+.+...+=...++
T Consensus 224 DpP~~~-~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~~~~~ 291 (324)
T d2as0a2 224 DPPAFV-QHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 291 (324)
T ss_dssp CCCCSC-SSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred CCcccc-CCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 332110 1111 12357888899999999999965332 3344444444444344443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.42 E-value=1.5e-06 Score=78.93 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=80.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCCCCCCceeEEEEcccccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
...+|||+|||+|.++..++..|. ..|+++|.++.+++.|.+.. +.......+.+...++..||+|.++-=|....
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~ 123 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 123 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccccc
Confidence 356899999999999988887763 48999999999999998742 11122223455666788999999977665444
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEE--eChhhHHHHHHHHhcCCceEEE
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIR--DEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~--d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
...+...+. +.+.+++.++.. ......+-++.+....+|.+..
T Consensus 124 ~~~d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 124 KHADRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp TTTTHHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 444443322 334445555443 2333456677888888998654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.41 E-value=1.9e-07 Score=86.56 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=63.8
Q ss_pred CCCceEEeecCcccHHHHHHHhC----CC-eEEEEeecCCCcccHHHHHhcC----c----cceeccccccCC-CCC--C
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSS----KL-WVMNVVPTLADKNTLGVIYERG----L----IGIYHDWCEAFS-TYP--R 414 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~----~~-~~~~v~~~d~~~~~l~~~~~rg----~----~~~~~~~~~~~~-~~p--~ 414 (506)
.+..+|||+|||+|.+++.|+.- ++ ....|+++|..+++++.|.++- + +..+.....+.. .++ +
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~ 158 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA 158 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence 44568999999999999888652 10 1136999999999999886641 0 111222222222 233 7
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.||.|+++.+..... ..+.+.|||||++++-
T Consensus 159 ~fD~Iiv~~a~~~~p---------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 159 PYNAIHVGAAAPDTP---------TELINQLASGGRLIVP 189 (223)
T ss_dssp SEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred ceeeEEEEeechhch---------HHHHHhcCCCcEEEEE
Confidence 899999977765322 3456899999999983
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=1.3e-07 Score=85.52 Aligned_cols=124 Identities=20% Similarity=0.183 Sum_probs=84.0
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCC-------CCC-C
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFS-------TYP-R 414 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~-------~~p-~ 414 (506)
+..+......++||++||+|+.+.++++.- ....|+++|.++.|++.|.++.- ...+......|. .+. +
T Consensus 16 i~~l~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~ 94 (192)
T d1m6ya2 16 IEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIE 94 (192)
T ss_dssp HHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCS
T ss_pred HHhhCCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCC
Confidence 334455566789999999999999998752 23689999999999999998731 111222223332 233 8
Q ss_pred ceeEEEEcccccccc------CcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhc
Q 010592 415 TYDLIHAHGLFSLYK------DKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGG 469 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~------~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~ 469 (506)
+||.|..+..+|... ........|.++.++|+|||.+++-.-.. ....++.+++.
T Consensus 95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 999998876665211 11234579999999999999998865443 23445556554
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.34 E-value=6.4e-07 Score=81.07 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=52.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.+.+|||+|||+|.++..++.. .|+++|+++ .+++.|+++...+.+.+.|...++ +.||+|+++..+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~-----~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP-----DAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCH-----HHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 4569999999999988777765 388888865 455666666666788888887764 679999998644
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.31 E-value=1.6e-06 Score=78.86 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=53.1
Q ss_pred CCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.+.+|||+|||+|.++..++.++ |+++|+++..+..+ .+.+...+....+...|...+ .+.||+|+++..+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a-~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVL-IENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHH-HHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHH-HHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 45699999999999998877763 78999987655333 333445577788887777665 4579999998755
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.31 E-value=3.9e-07 Score=83.77 Aligned_cols=99 Identities=20% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCC--Cc
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYP--RT 415 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p--~s 415 (506)
+++..+...+..+|||||||+|.+++.|+... ...|+.+|..++++..|.++ |+ ..+...+.+.. ..+ ..
T Consensus 69 ~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 69 IMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCC
T ss_pred HHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCc
Confidence 34444445556689999999999999887631 13588999998889888765 32 22222233332 234 89
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
||.|++..+..... . .+..-|||||++++
T Consensus 146 fD~Iiv~~a~~~ip-----~----~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIP-----E----PLIEQLKIGGKLII 174 (215)
T ss_dssp EEEEEECSBBSSCC-----H----HHHHTEEEEEEEEE
T ss_pred ceeEEeecccccCC-----H----HHHHhcCCCCEEEE
Confidence 99999977766322 1 23456999999987
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.29 E-value=1.1e-06 Score=85.62 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEecccc----CCCCCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK----MPYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~----lp~~~~sfDlV~ 171 (506)
++.+|||+.||+|.++..++.. .|+++|+++..+..+..+.. .+++ ...+...|+.. +.-..+.||+|+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~-~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE-ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH-HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH-HhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 3569999999999999887765 38999999977755554443 3443 36677777632 223456899999
Q ss_pred EcCccc--------ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 172 CSRCLI--------PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~~~~l~--------~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..... ....+-..++..+.++|+|||.|++++...
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 853211 000111368888999999999999987543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.7e-05 Score=72.70 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~ 155 (506)
...-.++..+.+.. ..++|||||||+|+.+.++++. .++++|.++.....+. +...+.+. .+.+..+
T Consensus 45 ~~~g~lL~~L~~~~-----~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~-~~~~~ag~~~~i~~~~G 118 (219)
T d2avda1 45 CEQAQLLANLARLI-----QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR-PLWRQAEAEHKIDLRLK 118 (219)
T ss_dssp HHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH-HHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHHHHHcc-----CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHH-HHHHhcCccceEEEEEe
Confidence 44456666666665 2458999999999999999874 4889999885544433 33333333 3566666
Q ss_pred cccc-CC-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIK-MP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~-lp-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++.. ++ ...++||+|+... ....-...+..+.+.|+|||.+++..
T Consensus 119 da~e~l~~~~~~~~~~~fD~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 119 PALETLDELLAAGEAGTFDVAVVDA----DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECS----CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ehhhcchhhhhhcccCCccEEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 6522 21 3467899999853 23334678899999999999999863
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.25 E-value=3.3e-07 Score=79.65 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=64.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCCCceeEEEEcc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYPRTYDLIHAHG 423 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p~s~Dlv~~~~ 423 (506)
...+|||+|||+|.++...+.+|. .+|+.+|.++++++.+.+- ++....+-.+.+ +......||+|+++-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 356899999999999987777764 4899999999999877654 332212212222 222348999999832
Q ss_pred ccccccCcCCHHHHHHHH--hhhccCCcEEEEEe
Q 010592 424 LFSLYKDKCNIEDILLEM--DRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d 455 (506)
=+. ......+|..+ .++|+|||.+++..
T Consensus 92 Py~----~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 PYA----KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SSH----HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhc----cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 221 01123344433 47899999999954
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.7e-06 Score=78.28 Aligned_cols=134 Identities=16% Similarity=0.071 Sum_probs=89.2
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceec----cccccCCC-----CCCc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYH----DWCEAFST-----YPRT 415 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~----~~~~~~~~-----~p~s 415 (506)
...+.++||++|||+|.-+..|++.-.....|+.+|.+++....|.+. |+-..+. +-.+.++. .+++
T Consensus 56 ~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~ 135 (219)
T d2avda1 56 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 135 (219)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred HccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence 334577899999999999999986411125899999999988877654 3311111 11111221 2479
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---------------hHHH-HHHHHhcCCceEEEeec
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------EIIK-VKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------~~~~-~~~~~~~~~w~~~~~~~ 479 (506)
||+|+.++ ++..-...+..+.+.|||||.+++-|..- .+.+ .+.+.+.-+|++...-.
T Consensus 136 fD~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi 209 (219)
T d2avda1 136 FDVAVVDA------DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 209 (219)
T ss_dssp EEEEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred ccEEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec
Confidence 99999832 22355678889999999999999965421 1222 34457778899887755
Q ss_pred CCCCCCCeEEEEEEe
Q 010592 480 EDGPLVPEKILVAVK 494 (506)
Q Consensus 480 ~~~~~~~~~~l~~~k 494 (506)
.| .+++|+|
T Consensus 210 gd------Gl~ia~K 218 (219)
T d2avda1 210 GD------GLTLAFK 218 (219)
T ss_dssp TT------CEEEEEE
T ss_pred CC------eeEEEEe
Confidence 54 3778877
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.24 E-value=1.2e-06 Score=80.55 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=74.6
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEE
Q 010592 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIG 153 (506)
Q Consensus 81 f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~ 153 (506)
.+...-.++..+.... .+++|||||||+|..+..|++. .++++|+++.....+...+ ...+. .+.+.
T Consensus 40 i~~~~G~lL~~lv~~~-----kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~gl~~~i~l~ 113 (214)
T d2cl5a1 40 VGDAKGQIMDAVIREY-----SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAGLQDKVTIL 113 (214)
T ss_dssp CHHHHHHHHHHHHHHH-----CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEE
T ss_pred cCHHHHHHHHHHHHhh-----CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcCCCccceee
Confidence 3344455666666555 2358999999999999999864 3889999886554443333 33344 36677
Q ss_pred Eecccc-CC-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 154 VLGTIK-MP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 154 ~~d~~~-lp-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.++... ++ +..++||+|+.-..-.. ......+.+..++|||||++++.
T Consensus 114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~--~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 114 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDR--YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp ESCHHHHGGGHHHHSCCCCEEEEEECSCGGG--HHHHHHHHHHTTCEEEEEEEEES
T ss_pred eccccccccchhhcccccccceeeecccccc--cccHHHHHHHhCccCCCcEEEEe
Confidence 766543 22 45578999998632111 11134577888999999987764
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.23 E-value=2.1e-06 Score=81.38 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=87.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---ee-ccccccCCCCCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IY-HDWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~-~~~~~~~~~~p~s~Dlv~~~~~ 424 (506)
..+|+|+|||+|..+..++..+ ..+|+++|.|+..+++|.+. ++.. .. .+|.+.++.....||+|.|+-=
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~--~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred ccEEEEeeeeeehhhhhhhhcc--cceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 4579999999999888887643 35799999999999988864 3311 11 2233333333379999999521
Q ss_pred -------cccccCcC----------CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCCCCCe
Q 010592 425 -------FSLYKDKC----------NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE 487 (506)
Q Consensus 425 -------~~~~~~~~----------~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 487 (506)
+....... .+..+-.=+.+.|+|||++++--.....+.++++++..+|- .|.. +.+
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~~---kDl~----g~~ 261 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVFL---KDSA----GKY 261 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTCEEE---ECTT----SSE
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHHhCCEE---eccC----CCc
Confidence 11000000 11111111467899999999976666678888999888873 2222 468
Q ss_pred EEEEEEec
Q 010592 488 KILVAVKQ 495 (506)
Q Consensus 488 ~~l~~~k~ 495 (506)
.+++++|+
T Consensus 262 R~~~~~k~ 269 (271)
T d1nv8a_ 262 RFLLLNRR 269 (271)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEc
Confidence 89999886
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.22 E-value=1.1e-06 Score=85.61 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=77.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccC-C------CCCCceeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAF-S------TYPRTYDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~-~------~~p~s~Dlv~ 420 (506)
.++|||+.||+|+|+.+++..+. ..|+++|.++.+++.|.+. |+- ..+...+.+. . .-.+.||+|.
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 46899999999999988877652 4699999999999987764 331 1111122221 1 1236899999
Q ss_pred Ecc-cccccc-CcCC----HHHHHHHHhhhccCCcEEEEEeCh------hhHHHHHHHHhcCCceEEEe
Q 010592 421 AHG-LFSLYK-DKCN----IEDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 421 ~~~-~~~~~~-~~~~----~~~~l~e~~RvLrPgG~~ii~d~~------~~~~~~~~~~~~~~w~~~~~ 477 (506)
++- .|.... .... ...++....++|+|||.|+++... +....+.+.+...+......
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 841 121100 0111 235788888999999999996432 23344555566666665543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.18 E-value=8.4e-07 Score=78.54 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=62.8
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc-cccC----CCCCCceeEEEEccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW-CEAF----STYPRTYDLIHAHGL 424 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~-~~~~----~~~p~s~Dlv~~~~~ 424 (506)
.+|||+|||+|.++...+.++ ..|+.+|.++.+++.+.+- |+...++.. +..+ ......||+|+++-=
T Consensus 43 ~~vLDl~~G~G~~~i~a~~~g---a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 43 GRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeccccchhhhhhhhcc---chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 479999999999999888887 3678899999999987653 332222111 1111 112278999998432
Q ss_pred cccccCcCCHHHHHHHH--hhhccCCcEEEEEeCh
Q 010592 425 FSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d~~ 457 (506)
|. -++...+.++ ..+|+|||.+++....
T Consensus 120 Y~-----~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 120 YA-----MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TT-----SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred cc-----cCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 22 1333344444 3589999999996543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.14 E-value=3.7e-07 Score=85.63 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=66.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCCCceeEEEEcccccccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
.+.++|||||||+|.++..|+++- ..++++..|.+ .+++.+.... +....++..+ ..|. .|++...++++.+.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~~~~~r~~~~~~d~~~---~~P~-ad~~~l~~vlh~~~ 153 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLP-HVIEDAPSYPGVEHVGGDMFV---SIPK-ADAVFMKWICHDWS 153 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECT-TTTTTCCCCTTEEEEECCTTT---CCCC-CSCEECSSSSTTSC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccH-HhhhhcccCCceEEecccccc---cCCC-cceEEEEEEeecCC
Confidence 457899999999999999998752 23578888986 6665544332 2223333223 2343 45566667777432
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
..+...+|+++.+.|+|||.++|.|
T Consensus 154 -d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 154 -DEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp -HHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCceEEEEE
Confidence 1245679999999999999999964
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.14 E-value=1.1e-06 Score=82.31 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=66.9
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
..+|||||||+|.++..++++ .+++.|+. ..++.+. ....+.+...|... +.+ .+|++++.+++|+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp------~vi~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHd 150 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP------QVVENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKYILHN 150 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH------HHHTTCC-CBTTEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH------HHHHhCc-ccCceEEEecCccc-CCC--CCcEEEEEeeccc
Confidence 358999999999999999886 35666662 2222221 12356777777653 333 5799999999999
Q ss_pred cCCCh-HHHHHHHHHhcCCC---eEEEEEc
Q 010592 179 WGAND-GRYMIEVDRVLRPG---GYWVLSG 204 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPG---G~li~~~ 204 (506)
|.++. ..+|+++.+.|+|| |.+++..
T Consensus 151 w~d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 151 WTDKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 87655 68999999999998 6677753
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=2.9e-06 Score=75.83 Aligned_cols=98 Identities=9% Similarity=-0.000 Sum_probs=66.7
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC-CeEEEEeccc-cCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~-~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||++||+|.++...+.+| |+.+|.++..+.....+ +...+. ...+...|+. .+......||+|++...+
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N-~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY- 121 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKN-LATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF- 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHH-HhhccccceeeeeecccccccccccccCEEEEcCcc-
Confidence 4589999999999999888874 88899987555433333 333333 3555555553 334456789999997643
Q ss_pred ccCCC-hHHHHHHHHH--hcCCCeEEEEEc
Q 010592 178 PWGAN-DGRYMIEVDR--VLRPGGYWVLSG 204 (506)
Q Consensus 178 ~~~~~-~~~~l~e~~r--vLkPGG~li~~~ 204 (506)
... ....+..+.+ +|+++|.+++..
T Consensus 122 --~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 --RRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp --STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 222 2566666654 699999999964
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=5e-06 Score=78.76 Aligned_cols=121 Identities=14% Similarity=0.127 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
+..+.+++.+.+.+... ...+|||+|||+|..+..++.. .|+++|+|+..+.-+. +.+...+.. ..+...+.
T Consensus 93 peTE~lv~~~~~~~~~~--~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~-~Na~~~~~~~~~~i~~~~~ 169 (271)
T d1nv8a_ 93 PETEELVELALELIRKY--GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEF 169 (271)
T ss_dssp TTHHHHHHHHHHHHHHH--TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESST
T ss_pred hhhhhhhhhhhhhhccc--cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHH-HHHHHcCCCceeEEeeccc
Confidence 34466666666655322 2348999999999888777654 5899999886554333 344455554 33333443
Q ss_pred cc-CCCCCCCeeEEEEcCcccccCC--------ChH----------HHHHH-HHHhcCCCeEEEEEcCC
Q 010592 158 IK-MPYASRAFDMAHCSRCLIPWGA--------NDG----------RYMIE-VDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~-lp~~~~sfDlV~~~~~l~~~~~--------~~~----------~~l~e-~~rvLkPGG~li~~~p~ 206 (506)
.. ++...++||+|+|+.-.+.-.+ +|. .++++ +.+.|+|||.+++....
T Consensus 170 ~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~ 238 (271)
T d1nv8a_ 170 LEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 238 (271)
T ss_dssp TGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred ccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence 22 2333478999999865432110 111 22323 56789999999998653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=1.5e-06 Score=78.30 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=74.8
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC---
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM--- 160 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l--- 160 (506)
+++++.+.+.. .++..+||++||+|.++..++++ .++++|.++.++..+.... ...+..+.+...+...+
T Consensus 11 ll~evi~~l~~--~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l-~~~~~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 11 MVREVIEFLKP--EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-KEFSDRVSLFKVSYREADFL 87 (192)
T ss_dssp THHHHHHHHCC--CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-GGGTTTEEEEECCGGGHHHH
T ss_pred HHHHHHHhhCC--CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhh-ccccccccchhHHHhhHHHH
Confidence 34555666643 34559999999999999999875 4788888765553333222 12244577777765443
Q ss_pred --CCCCCCeeEEEEcCccc--ccC------CChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 --PYASRAFDMAHCSRCLI--PWG------ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 --p~~~~sfDlV~~~~~l~--~~~------~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+..++||.|+.-..+. ++. ......|..+.++|+|||.+++..
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 24467899998643321 111 111478899999999999999875
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.08 E-value=3.9e-06 Score=80.90 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccC----CCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKM----PYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~l----p~~~~sfDlV~~ 172 (506)
.+.+|||++||+|.++..++..+ |++||+|...+..+..+... +++ .+.+.+.|+... ....+.||+|++
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l-n~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh-hcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 45699999999999999998874 88888887666555444433 333 367777776432 223568999998
Q ss_pred cCccc-------cc--CCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLI-------PW--GANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~-------~~--~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..--. .+ ..+...++..+.++|+|||.+++.+
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 53211 01 1112356677888999999766653
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.06 E-value=2e-06 Score=80.56 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=82.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccC
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
.+.++|||||||+|.++..++++- ...+++..|.+ ..++.+ +....+.....+|-+....+|+++..++|+.+.+
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~---~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRP-QVVENL---SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTD 153 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTTC---CCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecCH-HHHHhC---cccCceEEEecCcccCCCCCcEEEEEeecccCCh
Confidence 457889999999999999998752 22578888885 554433 2222222223444333346799999999985441
Q ss_pred cCCHHHHHHHHhhhccCC---cEEEEEeCh----------------------------hhHHHHHHHHhcCCceEEEe
Q 010592 431 KCNIEDILLEMDRILRPE---GAIIIRDEV----------------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPg---G~~ii~d~~----------------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
.+-..+|+.+.+.|+|| |+++|.|.. ...++.++++++.+++...+
T Consensus 154 -~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i 230 (244)
T d1fp2a2 154 -KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI 230 (244)
T ss_dssp -HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred -HHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEE
Confidence 13357999999999999 778885431 03567888899999986644
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.04 E-value=8e-06 Score=78.60 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=77.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eeccccccCCC-------CCCceeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFST-------YPRTYDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~~~~~-------~p~s~Dlv~ 420 (506)
..+|||+.||+|+|+.+++..+ ..|+.+|.|+.+++.|.+. |+.. .+...+++.-. ..+.||+|.
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 4589999999999999999876 4799999999999988764 3322 23333444321 127899999
Q ss_pred Eccc-cccccC------cCCHHHHHHHHhhhccCCcEEEEEeC-------hhhHHHHHHHHhcCCceEE
Q 010592 421 AHGL-FSLYKD------KCNIEDILLEMDRILRPEGAIIIRDE-------VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 421 ~~~~-~~~~~~------~~~~~~~l~e~~RvLrPgG~~ii~d~-------~~~~~~~~~~~~~~~w~~~ 475 (506)
++-= |..... ...+..++..+.++|+|||.+++... ....+.+.+.+...+..+.
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 8411 111110 11233456677889999997665321 1233455666777777765
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.03 E-value=5.2e-06 Score=77.56 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=66.0
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
..+|||||||+|.++..|+++ .+++.|+.+. + +.+. ....+.+...|... +.|. .|+++...+++.
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-----~~~~-~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~ 151 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-----EDAP-SYPGVEHVGGDMFV-SIPK--ADAVFMKWICHD 151 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-----TTCC-CCTTEEEEECCTTT-CCCC--CSCEECSSSSTT
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-----hhcc-cCCceEEecccccc-cCCC--cceEEEEEEeec
Confidence 468999999999999999986 4677787442 2 1111 12346666666532 4443 466778888988
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 179 WGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
|.++. ..+|+++.+.|+|||.+++..
T Consensus 152 ~~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 152 WSDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp SCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 86544 689999999999999998864
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.03 E-value=1.2e-06 Score=80.49 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=67.4
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec-cccccCCC----CC-C
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFST----YP-R 414 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~-~~~~~~~~----~p-~ 414 (506)
+...+.++||++|||+|..+..|++.-.....|+.+|.++++++.|.+. |+-. ... +..+.++. ++ +
T Consensus 52 v~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~ 131 (214)
T d2cl5a1 52 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD 131 (214)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred HHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccc
Confidence 3334567899999999999999986411235799999999999988643 5421 111 11222333 23 6
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+||+|+..+.-+ .......+.+..|.|||||.+++-|
T Consensus 132 ~~D~ifiD~~~~----~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 132 TLDMVFLDHWKD----RYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp CEEEEEECSCGG----GHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred ccceeeeccccc----ccccHHHHHHHhCccCCCcEEEEeC
Confidence 899999843222 1112345788889999999866543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2e-05 Score=73.72 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=56.4
Q ss_pred HHHHHHHHhhCCC---CCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEec
Q 010592 86 DKYIDQLASVIPI---KNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLG 156 (506)
Q Consensus 86 ~~~~~~l~~~l~~---~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d 156 (506)
..|++.+.+++.. ......+|||+|||+|..+..|+.+ .++++|+++..+.-+..+ +...++. ..+...+
T Consensus 42 ~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N-~~~n~l~~~~~~~~~~ 120 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN-VEQNNLSDLIKVVKVP 120 (250)
T ss_dssp HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECC
T ss_pred HHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHH-HHHhCCCcceeeeeec
Confidence 3344555555421 2234468999999999988888775 589999988666544433 3344444 3333322
Q ss_pred cccC------CCCCCCeeEEEEcCcccc
Q 010592 157 TIKM------PYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 157 ~~~l------p~~~~sfDlV~~~~~l~~ 178 (506)
.... ....++||+|+|+.-++.
T Consensus 121 ~~~~~~~~~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 121 QKTLLMDALKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp TTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred cHHhhhhhhhhcccCceeEEEecCcccc
Confidence 2111 123568999999987653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.01 E-value=3.9e-05 Score=74.45 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=91.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHH----hCCCeEEEEeecCCCcccHHHHHhcC----c-cceeccccccCCCCC-Ccee
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQ----SSKLWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYP-RTYD 417 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~----~~~~~~~~v~~~d~~~~~l~~~~~rg----~-~~~~~~~~~~~~~~p-~s~D 417 (506)
+......+|||.+||+|+|..++. +......+++++|.++.++.+|...- . ....+ ...+...+ ..||
T Consensus 113 ~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~fD 190 (328)
T d2f8la1 113 IQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVD 190 (328)
T ss_dssp HTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEE
T ss_pred hCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc--ccccccccccccc
Confidence 344556789999999999987764 33344578999999999998876542 1 11111 12233334 8999
Q ss_pred EEEEcccccccc--------------CcCCHH-HHHHHHhhhccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEe
Q 010592 418 LIHAHGLFSLYK--------------DKCNIE-DILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 418 lv~~~~~~~~~~--------------~~~~~~-~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~ 477 (506)
+|.++-=|.... ...++. ..+..+.+.|+|||++++--+. .....+++.+..-.+-..++
T Consensus 191 ~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii 270 (328)
T d2f8la1 191 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGII 270 (328)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEE
T ss_pred ccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEE
Confidence 999976664211 011122 2577899999999988774332 24567787655544444444
Q ss_pred ecC----CCCCCCeEEEEEEec
Q 010592 478 DHE----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 478 ~~~----~~~~~~~~~l~~~k~ 495 (506)
+.. .+...+-.+|+.+|+
T Consensus 271 ~lp~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 271 KLPETLFKSEQARKSILILEKA 292 (328)
T ss_dssp ECCGGGSCC-CCCEEEEEEEEC
T ss_pred ECCccccCCCCCCeEEEEEECC
Confidence 432 334456678888885
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=2.9e-05 Score=71.87 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=102.5
Q ss_pred hhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHH--hCCCeEEEEeecCCCcccHHH---HHhc-Cc--cc
Q 010592 329 EDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQ--SSKLWVMNVVPTLADKNTLGV---IYER-GL--IG 400 (506)
Q Consensus 329 ~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~--~~~~~~~~v~~~d~~~~~l~~---~~~r-g~--~~ 400 (506)
...+.|.+++.+-..++..+......+++|+|+|.|-=+.-|+ ... .+++-+|....-..+ +..+ |+ +.
T Consensus 47 ~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~---~~v~Lves~~KK~~FL~~v~~~L~L~n~~ 123 (239)
T d1xdza_ 47 EKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPH---LHVTIVDSLNKRITFLEKLSEALQLENTT 123 (239)
T ss_dssp SHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred CHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCC---ccceeecchHHHHHHHHHHHHHhCCCCcE
Confidence 3457898888876666666654456789999999996444443 333 578888887554443 3333 55 23
Q ss_pred eeccccccCCCC---CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---hHHHHHHHHhcCCceE
Q 010592 401 IYHDWCEAFSTY---PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDT 474 (506)
Q Consensus 401 ~~~~~~~~~~~~---p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~ 474 (506)
.++...|.+... ...||+|.| . ....+..++.-....|+|||.+++--... .+++.++.++.+++..
T Consensus 124 i~~~R~E~~~~~~~~~~~~D~v~s----R---Ava~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 124 FCHDRAETFGQRKDVRESYDIVTA----R---AVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL 196 (239)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEE----E---CCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred EEeehhhhccccccccccceEEEE----h---hhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence 455556665432 378999998 3 33478889999999999999999954443 4555566678888875
Q ss_pred EEeecC--CCCCCCeEEEEEEecc
Q 010592 475 KMVDHE--DGPLVPEKILVAVKQY 496 (506)
Q Consensus 475 ~~~~~~--~~~~~~~~~l~~~k~~ 496 (506)
.....- ......-.+++.+|.-
T Consensus 197 ~~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 197 ENIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECS
T ss_pred EEEEEEeCCCCCCCEEEEEEEECC
Confidence 533221 1222245677777754
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=2.9e-06 Score=75.56 Aligned_cols=134 Identities=11% Similarity=0.075 Sum_probs=77.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC-----------CCCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-----------YPRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~-----------~p~s~Dlv~ 420 (506)
+..+|||+||++|+|..++.+.......|+++|.. .|-.+ .|. .....++.. ....||+|.
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~-~~~~i---~~~----~~~~~d~~~~~~~~~~~~~~~~~~~DlVl 93 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLL-PMDPI---VGV----DFLQGDFRDELVMKALLERVGDSKVQVVM 93 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESS-CCCCC---TTE----EEEESCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecc-ccccc---CCc----eEeecccccchhhhhhhhhccCcceeEEE
Confidence 35689999999999999887642223467888876 33221 111 001111111 236799999
Q ss_pred EccccccccCcCC--------HHHHHHHHhhhccCCcEEEEE--eChhhHHHHHHHHhcCCceEEEeecC-CCCCCCeEE
Q 010592 421 AHGLFSLYKDKCN--------IEDILLEMDRILRPEGAIIIR--DEVDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPEKI 489 (506)
Q Consensus 421 ~~~~~~~~~~~~~--------~~~~l~e~~RvLrPgG~~ii~--d~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~ 489 (506)
|+.++....++.. ...+|.=..++|||||.+++- +..+ ...+...++..==++.+..-. .-+.+.|.+
T Consensus 94 SD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Y 172 (180)
T d1ej0a_ 94 SDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-FDEYLREIRSLFTKVKVRKPDSSRARSREVY 172 (180)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-HHHHHHHHHHHEEEEEEECCTTSCTTCCEEE
T ss_pred ecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-HHHHHHHHHhhcCEEEEECCCCcccCCceEE
Confidence 9988875543321 114666678999999999994 2222 223333333222223333333 123357999
Q ss_pred EEEEe
Q 010592 490 LVAVK 494 (506)
Q Consensus 490 l~~~k 494 (506)
|+|+.
T Consensus 173 lv~~g 177 (180)
T d1ej0a_ 173 IVATG 177 (180)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99975
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.97 E-value=1e-05 Score=78.70 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC---------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~ 172 (506)
.+.+|||.|||+|.++..+..+ .+.++|+++..+..+..... ..+........+.... .+...||+|++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~-~~~~~fD~vi~ 194 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLAN-LLVDPVDVVIS 194 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH-Hhhhhhhhhccccccc-ccccccccccc
Confidence 4558999999999998887532 37788998765544443333 3345556655554332 34568999999
Q ss_pred cCcccccCCCh-----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 173 SRCLIPWGAND-----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~~~~~~-----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..+....... ..++..+.+.|+|||++++..|..
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 87653211100 247899999999999999987754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.97 E-value=1.1e-05 Score=71.95 Aligned_cols=114 Identities=11% Similarity=-0.052 Sum_probs=72.9
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc---
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK--- 159 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~--- 159 (506)
.-+.+.++|.. ...+.+|||++||+|.++...+.+| |+.+|.++..+.... +.+...+. ...+...|+..
T Consensus 28 vrealFn~l~~-~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~-~N~~~~~~~~~~~i~~~D~~~~l~ 105 (182)
T d2fhpa1 28 VKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIK-ENIAITKEPEKFEVRKMDANRALE 105 (182)
T ss_dssp HHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHHTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHH-HHhhhhhcccccccccccchhhhh
Confidence 33445555531 1245699999999999999998884 788898775443333 23332233 35666666543
Q ss_pred -CCCCCCCeeEEEEcCcccccCCChHHHHHHHHH--hcCCCeEEEEEcC
Q 010592 160 -MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDR--VLRPGGYWVLSGP 205 (506)
Q Consensus 160 -lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~r--vLkPGG~li~~~p 205 (506)
+.-....||+|++..-+ . ..+....+..+.. +|+|+|.+++..+
T Consensus 106 ~~~~~~~~fDlIflDPPY-~-~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 106 QFYEEKLQFDLVLLDPPY-A-KQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHHHTTCCEEEEEECCCG-G-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhcccCCCcceEEechhh-h-hhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 22245689999987632 1 1223667777754 6999999998653
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.97 E-value=1.4e-05 Score=72.76 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=84.4
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC-CC-CceeEEEEcccc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-YP-RTYDLIHAHGLF 425 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~-~p-~s~Dlv~~~~~~ 425 (506)
+......+|||.|||+|+|...+.+......++.++|..+.++.++..-. .. +.++-. .+ ..||+|.++.-|
T Consensus 15 ~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~---~~---~~~~~~~~~~~~fd~ii~npP~ 88 (223)
T d2ih2a1 15 AEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAE---GI---LADFLLWEPGEAFDLILGNPPY 88 (223)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEE---EE---ESCGGGCCCSSCEEEEEECCCC
T ss_pred cCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccce---ee---eeehhccccccccceecccCcc
Confidence 34445568999999999998888653222357889999876655432211 11 122222 22 899999998776
Q ss_pred ccccC-------------------------cCCH-HHHHHHHhhhccCCcEEEEEeChh-----hHHHHHHH-HhcCCce
Q 010592 426 SLYKD-------------------------KCNI-EDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKI-VGGMRWD 473 (506)
Q Consensus 426 ~~~~~-------------------------~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-----~~~~~~~~-~~~~~w~ 473 (506)
..... ..++ ...+....+.|||||++++--+.. ....+++. ++.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~ 168 (223)
T d2ih2a1 89 GIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTS 168 (223)
T ss_dssp CCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEE
T ss_pred ccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCCEE
Confidence 53221 1122 245677889999999988743322 34567664 5555555
Q ss_pred EEEeecC-CCCCCCeEEEEEEec
Q 010592 474 TKMVDHE-DGPLVPEKILVAVKQ 495 (506)
Q Consensus 474 ~~~~~~~-~~~~~~~~~l~~~k~ 495 (506)
+...... .+...+-.+++.+|+
T Consensus 169 i~~~~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 169 VYYLGEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp EEEEESCSTTCCCCEEEEEEESS
T ss_pred EEcchhcCCCCCCcEEEEEEEeC
Confidence 3322211 233345667777763
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.94 E-value=2.6e-05 Score=70.90 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=72.8
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
...+.+.+++... .+.+|||.|||+|.|+..+.++ .+.++|+++..+. ..........+.....
T Consensus 6 ~i~~~m~~l~~~~--~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~---------~~~~~~~~~~~~~~~~ 74 (223)
T d2ih2a1 6 EVVDFMVSLAEAP--RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---------LPPWAEGILADFLLWE 74 (223)
T ss_dssp HHHHHHHHHCCCC--TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---------CCTTEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCC--CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh---------hcccceeeeeehhccc
Confidence 4556677777543 4559999999999998888653 3889999775321 1123445555544433
Q ss_pred CCCCCeeEEEEcCcccccCC---------------------------Ch-HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 YASRAFDMAHCSRCLIPWGA---------------------------ND-GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~---------------------------~~-~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
....||+|+++..+..... +. ..++..+.+.|+|||++.+..|..
T Consensus 75 -~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 75 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred -cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 3568999999865432110 00 256788999999999999988653
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=7.4e-05 Score=67.59 Aligned_cols=131 Identities=8% Similarity=0.090 Sum_probs=85.2
Q ss_pred hhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHH--HhCCCeEEEEeecCCCcccHHHHH----hcCcccee
Q 010592 329 EDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAI--QSSKLWVMNVVPTLADKNTLGVIY----ERGLIGIY 402 (506)
Q Consensus 329 ~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l--~~~~~~~~~v~~~d~~~~~l~~~~----~rg~~~~~ 402 (506)
.....|.+++.+-..+...+.. .+|+|+|+|.|-=+.-| .... .+++-+|....-+.+.. +=|+ ..+
T Consensus 45 ~~~~~~~rHi~DSl~~~~~~~~---~~ilDiGsGaG~PGi~laI~~p~---~~~~Lves~~KK~~FL~~~~~~L~L-~nv 117 (207)
T d1jsxa_ 45 DPNEMLVRHILDSIVVAPYLQG---ERFIDVGTGPGLPGIPLSIVRPE---AHFTLLDSLGKRVRFLRQVQHELKL-ENI 117 (207)
T ss_dssp ---CHHHHHHHHHHHHGGGCCS---SEEEEETCTTTTTHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHHHTTC-SSE
T ss_pred CHHHHHHHHhcchHhhhhhhcC---CceeeeeccCCceeeehhhhccc---ceEEEEecchHHHHHHHHHHHHcCC-cce
Confidence 3446788888776666666643 47999999999633333 3333 57888888766554332 2254 233
Q ss_pred ccccccCCCCC--CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 403 HDWCEAFSTYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 403 ~~~~~~~~~~p--~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
+..+.+...+. ..||+|.| . ...++..++.-....|+|||.+++--.....++++.+ +-.|...
T Consensus 118 ~v~~~R~E~~~~~~~fD~V~s----R---A~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~--~~~~~~~ 183 (207)
T d1jsxa_ 118 EPVQSRVEEFPSEPPFDGVIS----R---AFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALL--PEEYQVE 183 (207)
T ss_dssp EEEECCTTTSCCCSCEEEEEC----S---CSSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTS--CTTEEEE
T ss_pred eeeccchhhhccccccceehh----h---hhcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhh--hcCCEEE
Confidence 33345555543 68999987 2 2347888999999999999999997666566666654 3467644
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.76 E-value=4.4e-05 Score=70.25 Aligned_cols=132 Identities=15% Similarity=0.061 Sum_probs=85.3
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc----cCCC------CCCce
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE----AFST------YPRTY 416 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~----~~~~------~p~s~ 416 (506)
.+.++||++|+++|.-+..|++.-.....|+.+|.+++....|.+. |+...+.-... .++. .+++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 3577899999999998888875211125889999998888877663 43211111111 1222 24689
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh--------------hh----HHHHH----HHHhcCCceE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------DE----IIKVK----KIVGGMRWDT 474 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------------~~----~~~~~----~~~~~~~w~~ 474 (506)
|+|+.+. ++......+..+.+.|||||.+++-+-+ .. .+.++ .+...=+|++
T Consensus 138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~ 211 (227)
T d1susa1 138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEI 211 (227)
T ss_dssp SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCC
T ss_pred eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999832 2234567888889999999999995432 11 11222 2355677888
Q ss_pred EEeecCCCCCCCeEEEEEEe
Q 010592 475 KMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~k 494 (506)
.+.-..|| +++|+|
T Consensus 212 ~llPigDG------l~i~~K 225 (227)
T d1susa1 212 CMLPVGDG------ITICRR 225 (227)
T ss_dssp EEECSTTC------EEEECB
T ss_pred EEeecCCe------eEEEEE
Confidence 77766654 677776
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.72 E-value=3.8e-05 Score=70.62 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=74.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~ 158 (506)
-.++..+.+.. ..++|||||+++|+-+..+++. .++++|.++.....+. +...+.|.. +.+..+++.
T Consensus 48 g~~L~~L~~~~-----~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~-~~~~~~g~~~~i~~~~g~a~ 121 (227)
T d1susa1 48 GQFLSMLLKLI-----NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL-PVIKKAGVDHKIDFREGPAL 121 (227)
T ss_dssp HHHHHHHHHHH-----TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH-HHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHhc-----CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH-HHHHHhccccceeeeehHHH
Confidence 45666666665 2458999999999999888853 4889999885443333 333344443 555555552
Q ss_pred -cCC------CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 159 -KMP------YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 159 -~lp------~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.++ ...++||+|+.-. ....-...++.+.+.|+|||.+++.
T Consensus 122 ~~L~~l~~~~~~~~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 122 PVLDEMIKDEKNHGSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHHHHCGGGTTCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHHHhccccCCceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEc
Confidence 122 1356899999853 3344478899999999999999986
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=2.2e-05 Score=69.86 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=64.2
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc---Cccceecccccc----CCCCCCceeEEEEccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---GLIGIYHDWCEA----FSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---g~~~~~~~~~~~----~~~~p~s~Dlv~~~~~~~ 426 (506)
.+|||++||+|.++...+.+|. -.|+.+|.++..++.+.+- .......-.+.+ +......||+|+++-=+.
T Consensus 45 ~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 4699999999999988888874 4799999999999877653 111111111121 222348999999954332
Q ss_pred cccCcCCHHHHHHHHh--hhccCCcEEEEEe
Q 010592 427 LYKDKCNIEDILLEMD--RILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~--RvLrPgG~~ii~d 455 (506)
....+.+|.-+. .+|+|+|.+++..
T Consensus 123 ----~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 123 ----RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ----TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ----cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 223455555554 4799999999953
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.63 E-value=1.3e-05 Score=76.25 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=67.1
Q ss_pred CCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHH----------HcCCCeEEEEeccccCCCCCCCe
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFAL----------ERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~----------~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
..+++||-||+|.|..+..+++. .++++++++..+.-+..-+.. .....+.+...|+...--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 34569999999999999998876 378888877544322211100 01345677777764322235789
Q ss_pred eEEEEcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 168 DMAHCSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 168 DlV~~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+|++-.. .+.... ...+++.+.+.|+|||.+++..
T Consensus 151 DvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 99997432 222111 1578999999999999999854
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=9.7e-05 Score=68.92 Aligned_cols=127 Identities=9% Similarity=0.012 Sum_probs=80.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec-cccccC-CC----CCCcee
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAF-ST----YPRTYD 417 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~-~~~~~~-~~----~p~s~D 417 (506)
....+|||||||+|-.+..|+.+- ...+++++|.+++++++|.+- ++-. ..+ ++...+ .. ....||
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred cccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 345689999999999988887641 235899999999999988774 2211 111 111221 11 126899
Q ss_pred EEEEccccccccCc----------------------C----------CHHHHHHHHhhhccCCcEEEE-EeChhhHHHHH
Q 010592 418 LIHAHGLFSLYKDK----------------------C----------NIEDILLEMDRILRPEGAIII-RDEVDEIIKVK 464 (506)
Q Consensus 418 lv~~~~~~~~~~~~----------------------~----------~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~ 464 (506)
+|.|+-=|-..... . -+..++.|-.+.++..|++.. --..+..++|+
T Consensus 139 ~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~ 218 (250)
T d2h00a1 139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLK 218 (250)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHH
T ss_pred EEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHH
Confidence 99997655421100 0 023467788888999998854 22334567788
Q ss_pred HHHhcCCce-EEEee
Q 010592 465 KIVGGMRWD-TKMVD 478 (506)
Q Consensus 465 ~~~~~~~w~-~~~~~ 478 (506)
+++++.+.. +..++
T Consensus 219 ~~L~~~g~~~i~~ie 233 (250)
T d2h00a1 219 EELRIQGVPKVTYTE 233 (250)
T ss_dssp HHHHHTTCSEEEEEE
T ss_pred HHHHHcCCCeEEEEE
Confidence 888888874 34433
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.62 E-value=3.3e-05 Score=74.60 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=69.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH-----cCCCeEEEEeccccC-CCCCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE-----RGVPAVIGVLGTIKM-PYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~-----~~~~~~~~~~d~~~l-p~~~~sfDlV~ 171 (506)
..++||.||.|.|..+..+++. .++++++++..+..+...+... ....+.+...|.... .-..++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 4569999999999999998765 4889999876554333322211 234577777776432 22356899999
Q ss_pred EcCcccccCCC-------hHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGAN-------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~-------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+-.. .++..+ ...+++.+.+.|+|||.|++..
T Consensus 157 ~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 157 IDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 6431 122111 1578999999999999999854
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.58 E-value=7.4e-05 Score=72.02 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=86.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-----cc-eeccccccCCCCCCceeE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-----IG-IYHDWCEAFSTYPRTYDL 418 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-----~~-~~~~~~~~~~~~p~s~Dl 418 (506)
...++||.+|.|.|+.+..+.+.. .+.+|+.+|+++++++++.+.- . +. ...|.-+-+...++.||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 446789999999999999887653 2468899999999999887642 1 00 111111112224589999
Q ss_pred EEEccc--cccccCcCCH--HHHHHHHhhhccCCcEEEEEe------ChhhHHHHHHHHhcCCceEEEeec-CCCCCCCe
Q 010592 419 IHAHGL--FSLYKDKCNI--EDILLEMDRILRPEGAIIIRD------EVDEIIKVKKIVGGMRWDTKMVDH-EDGPLVPE 487 (506)
Q Consensus 419 v~~~~~--~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d------~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~ 487 (506)
|++... +........+ ...++.+.|.|||||.+++.- .......+.+.+++.=..+..... ..+-...+
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w 234 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNF 234 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCC
Confidence 997432 1100001111 468999999999999999832 122445565555555444443211 11000135
Q ss_pred EEEEEEecc
Q 010592 488 KILVAVKQY 496 (506)
Q Consensus 488 ~~l~~~k~~ 496 (506)
.+++|.|..
T Consensus 235 ~f~~aS~~~ 243 (312)
T d1uira_ 235 GFLLASDAF 243 (312)
T ss_dssp EEEEEESSS
T ss_pred EeEEEeCCC
Confidence 677788753
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.56 E-value=6.8e-05 Score=66.53 Aligned_cols=97 Identities=20% Similarity=0.161 Sum_probs=65.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CC---CCCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----ST---YPRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~---~p~s~Dlv~ 420 (506)
...+|||+.||+|.++...+.+|. ..|+.+|.++.++..+.+. +....++-.+.+. .. -...||+|+
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 356899999999999998888874 4799999999999987653 2222222222221 11 225899999
Q ss_pred EccccccccCcCCHHHHHHHHh--hhccCCcEEEEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMD--RILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~--RvLrPgG~~ii~ 454 (506)
++-=+. ......+|..+. .+|+|+|.+++.
T Consensus 119 lDPPY~----~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 119 LDPPYA----KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ECCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhhh----hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 943221 224566777664 479999999985
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00017 Score=63.71 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=66.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC----
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM---- 160 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l---- 160 (506)
.+|.+...+- .++.+||||||+.|.|+.++.++ .+.++|+.+.. .-....+...+....
T Consensus 11 ~EI~~k~~l~-k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~ 78 (180)
T d1ej0a_ 11 DEIQQSDKLF-KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMK 78 (180)
T ss_dssp HHHHHHHCCC-CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHH
T ss_pred HHHHHHhCcc-CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccCCceEeecccccchhhh
Confidence 3455554332 34569999999999999998874 37888886632 122345555554321
Q ss_pred ----CCCCCCeeEEEEcCcccccCCCh-----------HHHHHHHHHhcCCCeEEEEEc
Q 010592 161 ----PYASRAFDMAHCSRCLIPWGAND-----------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 ----p~~~~sfDlV~~~~~l~~~~~~~-----------~~~l~e~~rvLkPGG~li~~~ 204 (506)
....+.||+|+|-.+. ....+. ...+.-+.++||+||.|++-.
T Consensus 79 ~~~~~~~~~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 79 ALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhccCcceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 1235679999996553 222211 145677789999999999864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.51 E-value=0.0001 Score=68.13 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=58.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc---CCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~---~~~~~~~~~d~~~l 160 (506)
...++.|.+.+... ++.+|||||||+|.++..|++. .++++++++..+ +..+++ ..++.+..+|+..+
T Consensus 7 ~~i~~~iv~~~~~~--~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~-----~~l~~~~~~~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 7 KHNIDKIMTNIRLN--EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLC-----KTTENKLVDHDNFQVLNKDILQF 79 (235)
T ss_dssp HHHHHHHHTTCCCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHH-----HHHHHHTTTCCSEEEECCCGGGC
T ss_pred HHHHHHHHHhcCCC--CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchH-----HHHHHHhhcccchhhhhhhhhhc
Confidence 44567777877543 4559999999999999999986 488999866433 333322 34578888898888
Q ss_pred CCCCCCeeEEEEcCc
Q 010592 161 PYASRAFDMAHCSRC 175 (506)
Q Consensus 161 p~~~~sfDlV~~~~~ 175 (506)
+++......|+++.-
T Consensus 80 ~~~~~~~~~vv~NLP 94 (235)
T d1qama_ 80 KFPKNQSYKIFGNIP 94 (235)
T ss_dssp CCCSSCCCEEEEECC
T ss_pred cccccccceeeeeeh
Confidence 776555556676653
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.51 E-value=0.00036 Score=66.28 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=70.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEecccc-C-CCCCCCeeEE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIK-M-PYASRAFDMA 170 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~----~~~~~~~~~~~d~~~-l-p~~~~sfDlV 170 (506)
...++||=||-|.|..++.+.+. .++.+|+++..+..+..-+.. .......+...|... + ....++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 34569999999999999999876 378899987554333222211 124567777777532 2 2345689999
Q ss_pred EEcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 171 HCSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 171 ~~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.-. ..+.... ...+++.+.+.|+|||.+++...
T Consensus 159 i~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 159 IVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 9743 2221111 15799999999999999999764
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00048 Score=67.27 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecccc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK 159 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~ 159 (506)
...+.+++.+.+++... ++.+|||+-||+|.|+..|+++ .|+++|+++..+. .+.+.+..+++. ..+...+...
T Consensus 195 ~~~e~l~~~v~~~~~~~--~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~-~A~~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 195 GVNQKMVARALEWLDVQ--PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE-KGQQNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHHHTCC--TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHH-HHHHHHHHTTCCSEEEEECCTTS
T ss_pred hhhhHHHHHHHHhhccC--CCceEEEecccccccchhccccccEEEeccCcHHHHH-HHHHhHHhcccccceeeecchhh
Confidence 34577778888887443 3458999999999999999987 5999999886554 444555556665 5566665533
Q ss_pred -C---CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 160 -M---PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 -l---p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +.....||+|+...-- .. ....+..+.+. +|.-.++++..|.
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR---~G-~~~~~~~l~~~-~~~~ivYVSCnp~ 318 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPAR---AG-AAGVMQQIIKL-EPIRIVYVSCNPA 318 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCT---TC-CHHHHHHHHHH-CCSEEEEEESCHH
T ss_pred hhhhhhhhhccCceEEeCCCC---cc-HHHHHHHHHHc-CCCEEEEEeCCHH
Confidence 2 2335679999875422 11 24566666664 7888888887655
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=0.00026 Score=67.35 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=69.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+++||-||.|.|..+..+++. .++++|+++..+.-+..-+... ....+.+...|... +.-..+.||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 4569999999999999999876 3788999886554333222221 23456777777632 2233568999997
Q ss_pred cCcccccC-C----ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 173 SRCLIPWG-A----NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~-~----~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
-.. .+.. + ....+++.+.+.|+|||.+++...
T Consensus 169 D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 169 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 432 1211 1 126899999999999999998654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.39 E-value=0.00019 Score=63.50 Aligned_cols=124 Identities=18% Similarity=0.142 Sum_probs=86.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCC----CC-CceeEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFST----YP-RTYDLI 419 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~----~p-~s~Dlv 419 (506)
.+......+++|..+|.||.+.+|.+++ .+|+++|..++++..|.++-. +..+|.....+.. +. ..+|.|
T Consensus 13 ~l~~~~g~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgI 89 (182)
T d1wg8a2 13 LLAVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGI 89 (182)
T ss_dssp HHTCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred hcCCCCCCEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEE
Confidence 3444556689999999999999999875 589999999999999887532 3344443333332 33 689999
Q ss_pred EEcccccccc--CcC----CHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCce
Q 010592 420 HAHGLFSLYK--DKC----NIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWD 473 (506)
Q Consensus 420 ~~~~~~~~~~--~~~----~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~ 473 (506)
..+..++... +.. .+...|.....+|+|||.+++-.--. ....++.+++.-.++
T Consensus 90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k 150 (182)
T d1wg8a2 90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK 150 (182)
T ss_dssp EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence 9977776321 111 12346777789999999999866543 334567777766555
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.39 E-value=0.00057 Score=62.87 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=61.4
Q ss_pred CCEEEEECCCCChhHHHHhh----CCcEEEecCccchHHHHHH-HHHHcCCCeEE-EEeccccCCC---CCCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQVQ-FALERGVPAVI-GVLGTIKMPY---ASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~----~~v~~vdis~~di~~~~~~-~a~~~~~~~~~-~~~d~~~lp~---~~~sfDlV~~~ 173 (506)
..+++|||+|.|.-+..|+- ..++.+|-+..-. +.++ ...+-++.... ....++.+.. ..++||+|+|.
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~--~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI--TFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH--HHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH--HHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 45899999999976666653 2577787754311 2222 33444665443 3333444331 24589999996
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+ .....++.-+...+++||.+++-
T Consensus 149 Av-----a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 149 AV-----ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred hh-----hCHHHHHHHHhhhcccCCEEEEE
Confidence 43 23578999999999999999885
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.37 E-value=0.00052 Score=64.71 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=66.2
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-cc------------ceecccccc-CCC--CC
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI------------GIYHDWCEA-FST--YP 413 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~------------~~~~~~~~~-~~~--~p 413 (506)
....++||-+|+|.|+.+..+.+.+. ..|+.+|++++++++|.+-- +. ..++-..++ +.. -.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~ 147 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 147 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCC--ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence 34578999999999999999887654 36788889999999987531 10 000011111 111 13
Q ss_pred CceeEEEEccccccccCcCC--HHHHHHHHhhhccCCcEEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++||+|..+..-.. ..... -...+..+.|.|+|||.+++.
T Consensus 148 ~~yDvIi~D~~~~~-~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 148 RGFDVIIADSTDPV-GPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CCEEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCC-CCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 78999998443221 11111 146899999999999999984
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.34 E-value=5.1e-05 Score=70.61 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=60.7
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
..++.|.+.+... ++.+|||||||+|.++..|++. .++++|+++.++......+. ...++.+..+|+..++++.
T Consensus 16 ~ii~kIv~~~~~~--~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~~ 91 (245)
T d1yuba_ 16 KVLNQIIKQLNLK--ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp TTHHHHHHHCCCC--SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHHhcCCC--CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhh--hccchhhhhhhhhcccccc
Confidence 3456677777543 3458999999999999999886 48999998865532211111 1234677778888888888
Q ss_pred CCeeEEEEcCcc
Q 010592 165 RAFDMAHCSRCL 176 (506)
Q Consensus 165 ~sfDlV~~~~~l 176 (506)
..++.|+++..+
T Consensus 92 ~~~~~vv~NLPY 103 (245)
T d1yuba_ 92 KQRYKIVGNIPY 103 (245)
T ss_dssp SSEEEEEEECCS
T ss_pred ceeeeEeeeeeh
Confidence 888888887654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00034 Score=66.29 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=68.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~----~~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
..++||-||-|.|..+..+.+. .++++||++..+.-+..-+.. ....++.+...|+.. +.-..++||+|++
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 4569999999999999999876 478889987554333322211 123567777777632 2224568999998
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
-. ..+.... ...+++.+.+.|+|||.+++..
T Consensus 158 D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 158 DS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred cC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 53 2221111 1478999999999999999865
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.33 E-value=0.00038 Score=65.57 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=70.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
...+||-||-|.|..++.+.+. .++++||++..+..+..-+... ...++.+...|... +.-..++||+|+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 3468999999999999999875 4788999886554333222211 23456777777633 2234578999997
Q ss_pred cCcccccCC----ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 173 SRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
-.. .+... ....+++.+.+.|+|||.++....
T Consensus 155 D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 155 DST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp SCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 432 22111 125899999999999999998653
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.33 E-value=0.00032 Score=62.00 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=63.6
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC---CeEEEEeccc---cCCCCCCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTI---KMPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~---~lp~~~~sfDlV~~~ 173 (506)
+.+|||+-||+|.++...+.+| ++.+|.+...+ ....+....-+. ...+...+.. ........||+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchh-hhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 4589999999999999999985 77888866433 222233333232 2333333322 223345579999997
Q ss_pred CcccccCCCh-HHHHHHHHH--hcCCCeEEEEEcC
Q 010592 174 RCLIPWGAND-GRYMIEVDR--VLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~r--vLkPGG~li~~~p 205 (506)
.-+ ..+. ...+..+.. +|+++|.+++..+
T Consensus 123 PPY---~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPF---HFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCS---SSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhH---hhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 643 3333 566666654 7999999999754
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.27 E-value=0.00031 Score=64.45 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=57.3
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcc--cHHH---HHhcCccceeccccccCCCC-CCceeEEEEcccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN--TLGV---IYERGLIGIYHDWCEAFSTY-PRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~--~l~~---~~~rg~~~~~~~~~~~~~~~-p~s~Dlv~~~~~~~~ 427 (506)
.+|+|+|||+|+++..+++.. .++.|.+.+.--+ +.++ .+..+++... --.++-.. +...|+|.|+-+=+
T Consensus 68 ~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~--~~~dv~~l~~~~~D~vlcDm~es- 143 (257)
T d2p41a1 68 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQ--SGVDVFFIPPERCDTLLCDIGES- 143 (257)
T ss_dssp EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEE--CSCCTTTSCCCCCSEEEECCCCC-
T ss_pred CeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccch--hhhhHHhcCCCcCCEEEeeCCCC-
Confidence 479999999999999998763 3456666665211 1111 1111111111 11233333 38899999965432
Q ss_pred ccCcC----CHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 428 YKDKC----NIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 428 ~~~~~----~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
..+.. ....+|.=+.++|+|||-|++.-..
T Consensus 144 s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 144 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 11110 1114666667899999999996443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.25 E-value=0.00025 Score=67.86 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=64.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~----~~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+++||-||-|.|..++.+++. .++++++++..+..+..-+.. -....+.+...|... +.-..++||+|++
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 4568999999999999999875 478888876444222211111 112446666666532 2223568999998
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
-.. .+.... ...+++.+.+.|+|||.++.-..
T Consensus 186 D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 186 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 432 121110 14789999999999999999754
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.15 E-value=0.00051 Score=68.85 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=75.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----------------CcEEEecCccchHHHHHHHHHHcCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----------------NVIAMSFAPRDSHEAQVQFALERGV 148 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----------------~v~~vdis~~di~~~~~~~a~~~~~ 148 (506)
...++.+.+++.. ..+.+|||-.||+|.|...+.++ .+.++|+++....-+..........
T Consensus 148 ~~Iv~~mv~ll~~--~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~ 225 (425)
T d2okca1 148 RPLIQAMVDCINP--QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 225 (425)
T ss_dssp HHHHHHHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred hhhhHhhheeccC--cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence 4455666676632 34558999999999998776442 4778999776555444444433211
Q ss_pred --CeEEEEeccccCCCCCCCeeEEEEcCcccccC---------------CC-hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 149 --PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG---------------AN-DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 149 --~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~---------------~~-~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...+...|.... .+...||+|+++..+..-. .+ ...++..+...|++||.+.+..|.
T Consensus 226 ~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 226 TDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp SSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 122333444322 3456899999987552100 00 125899999999999999998764
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.0013 Score=59.13 Aligned_cols=93 Identities=13% Similarity=0.022 Sum_probs=62.7
Q ss_pred CEEEEECCCCChhHHHHhh----CCcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 104 RTALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~----~~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+|||+|+|.|.-+..|+- ..++.+|.+..-. ....+.+.+-++. +......++.+. ...+||+|+|.. +
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~-~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA-~-- 141 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F-- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S--
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHH-HHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhh-h--
Confidence 4899999999976666653 2578888865322 1122334455664 455555556554 356899998854 3
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 179 WGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.....++.-+...+++||.+++.
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEE
Confidence 23577889999999999999886
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.03 E-value=0.0013 Score=60.20 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~ 157 (506)
+++..+.+ +.+.....+ ..+|+|+|||.|.++.+++.+ ++.++++-. +.++.-+. ....+-+ +.+... .
T Consensus 50 R~~~Kl~~-~~~~~~~~~--~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~~-~~~~~~ni~~~~~~-~ 123 (257)
T d2p41a1 50 RGSAKLRW-FVERNLVTP--EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPIP-MSTYGWNLVRLQSG-V 123 (257)
T ss_dssp THHHHHHH-HHHTTSSCC--CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCCC-CCSTTGGGEEEECS-C
T ss_pred hHHHHHHH-HHHhcCccC--CCeEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCcc-ccccccccccchhh-h
Confidence 44555543 444333332 348999999999999999876 355666632 21110000 0000111 111111 1
Q ss_pred ccCCCCCCCeeEEEEcCcccccCCCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010592 158 IKMPYASRAFDMAHCSRCLIPWGAND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~~~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
.-.-.+.+.+|+|+|-.+- . ..++ -.+|+-+.++|+|||-|++-+
T Consensus 124 dv~~l~~~~~D~vlcDm~e-s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 124 DVFFIPPERCDTLLCDIGE-S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp CTTTSCCCCCSEEEECCCC-C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hHHhcCCCcCCEEEeeCCC-C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence 1112346789999997542 2 2222 156777789999999998865
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0018 Score=61.13 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=69.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEE--
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHC-- 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~-- 172 (506)
.++.+|||+.+|.|.=+..|++. .++++|+++.-+. ...+.....+.++...+.+....+ ...+.||.|++
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~-~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLS-RVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHH-HHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhh-hHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 34569999999999877776653 3889999987653 344555566777665554433221 23568999995
Q ss_pred --cCcccccCCCh------------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 173 --SRCLIPWGAND------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 --~~~l~~~~~~~------------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..- .+..++ ..+|..+.+.|||||+++.++-..
T Consensus 180 PCSg~G-~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 180 PCSATG-VIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCCCGG-GTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccccC-ccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 2211 111111 167888999999999999987554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.00052 Score=65.23 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=68.3
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-c-c--------e-eccccccCCCCCCceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-I-G--------I-YHDWCEAFSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~-~--------~-~~~~~~~~~~~p~s~Dlv 419 (506)
...++||=+|.|.|+.+..+.+.. .+..|+.+|+++.+++++.+-.- . + . ..|--+-+...++.||+|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 447899999999999999998753 24678888999999999876421 0 0 0 101001122345889999
Q ss_pred EEccccccccCcC--CHHHHHHHHhhhccCCcEEEEEeC
Q 010592 420 HAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 420 ~~~~~~~~~~~~~--~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.++..-....... --...+..+.|.|+|||.+++.-.
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 9853322111111 125789999999999999999543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0083 Score=58.03 Aligned_cols=124 Identities=11% Similarity=0.152 Sum_probs=83.2
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC-
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY- 412 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~- 412 (506)
..++..+...+..+|||+-||+|.|+..|+++. ..|+++|.++..++.|.+- |+ .+....+.+ +...
T Consensus 202 ~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~~~~~~ 277 (358)
T d1uwva2 202 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQP 277 (358)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSSG
T ss_pred HHHHHhhccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhhhhhhh
Confidence 344445555667789999999999999999865 5899999999998877653 32 222222222 2222
Q ss_pred --CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEe
Q 010592 413 --PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 413 --p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~ 477 (506)
...||+|.. . ++|..+..++.++.+ ++|.=.++|+-+.. ....++.+ .+.+|++..+
T Consensus 278 ~~~~~~d~vil----D--PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l-~~~gy~l~~i 337 (358)
T d1uwva2 278 WAKNGFDKVLL----D--PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEAL-LKAGYTIARL 337 (358)
T ss_dssp GGTTCCSEEEE----C--CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHH-HHTTCEEEEE
T ss_pred hhhccCceEEe----C--CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHH-HHCCCeEeEE
Confidence 277999987 1 245566677887766 58999999986654 34555544 3557886644
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.89 E-value=0.00055 Score=65.46 Aligned_cols=144 Identities=11% Similarity=0.043 Sum_probs=81.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c-cceecc------cccc---CCCCCCceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L-IGIYHD------WCEA---FSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~-~~~~~~------~~~~---~~~~p~s~Dlv 419 (506)
...++||-+|.|.|+.+..+.+.. .+.+|+.+|+.+++++++.+-- . .....+ .... +...++.||+|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 457789999999999999998853 2468999999999999987631 1 000000 0001 11235889999
Q ss_pred EEccccccccC-cCCHHHHHHHHhhhccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec-C-CCCCCCeEEEE
Q 010592 420 HAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH-E-DGPLVPEKILV 491 (506)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~-~-~~~~~~~~~l~ 491 (506)
.++..-..... ..--...+..+.|.|+|||.++..-.. +....+.+.+++.=..+..... . .=+...+.+++
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~ 263 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLI 263 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEE
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeE
Confidence 98543221111 011135899999999999999996322 2333344444443333332211 1 10112455677
Q ss_pred EEec
Q 010592 492 AVKQ 495 (506)
Q Consensus 492 ~~k~ 495 (506)
|.|.
T Consensus 264 aSk~ 267 (312)
T d2b2ca1 264 CAKN 267 (312)
T ss_dssp EESS
T ss_pred EECC
Confidence 7764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.89 E-value=0.0011 Score=63.50 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEE--
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHC-- 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~-- 172 (506)
.++.+|||+.||.|.=+..+++. .+++.|+++.-+.... +.....+.. +.....|...++.....||.|++
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~-~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHH-HHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 34569999999999766666542 2788898765443222 233333444 44444555566656778999996
Q ss_pred --cCc--cc-----ccCCCh----------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 173 --SRC--LI-----PWGAND----------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 --~~~--l~-----~~~~~~----------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.. +. .|.... ..+|..+.+.|||||+++.++-..
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 211 10 010011 167889999999999999987544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.87 E-value=0.00098 Score=63.16 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=69.3
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c---------c-ceeccccccCCCCC-Cce
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L---------I-GIYHDWCEAFSTYP-RTY 416 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~---------~-~~~~~~~~~~~~~p-~s~ 416 (506)
.....++||=+|-|.|+.+..+.+.. .+..|+.+|+++++++++++-- . . -.+.|-.+-+...+ +.|
T Consensus 77 ~~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 77 SIPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred hCCCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence 33457899999999999999998753 2357888899999999887632 0 0 01111111122234 699
Q ss_pred eEEEEccccccccCcCC--HHHHHHHHhhhccCCcEEEEEe
Q 010592 417 DLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|..+ ++.-...... -...++.+.|.|+|||.+++.-
T Consensus 156 DvIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 156 DAVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 999984 3321111111 1468999999999999999953
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.80 E-value=0.0029 Score=55.52 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=70.0
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCC----
Q 010592 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMP---- 161 (506)
Q Consensus 89 ~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp---- 161 (506)
++++.+.+.. .++..++|..+|.|.++..++++ .++++|..+. ++..+.+. .....+.......+.
T Consensus 7 l~Evl~~l~~--~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~-----ai~~a~~~~~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 7 YQEALDLLAV--RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPE-----AVARAKGLHLPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp HHHHHHHHTC--CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTCCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHhcCC--CCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhh-----HHHHHhhccccceeEeehHHHHHHHHHH
Confidence 3455555533 34558999999999999999987 3888888663 33444443 223555555443321
Q ss_pred -CCCCCeeEEEEcCccc--ccCC------ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 -YASRAFDMAHCSRCLI--PWGA------NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 -~~~~sfDlV~~~~~l~--~~~~------~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+..+.+|.|+.-..+. ++.. .....|.....+|+|||.+++..
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 3356799999744332 2111 01246888899999999999875
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.66 E-value=0.0067 Score=56.71 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=85.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----c-----cc-eeccccccCCCCCCceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----L-----IG-IYHDWCEAFSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----~-----~~-~~~~~~~~~~~~p~s~Dlv 419 (506)
...++||-+|-|.|+.++.+.+.. .+.+|+.+|+.++++++|.+-- . +. ...|--+-+...++.||+|
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 346799999999999999998752 1357888888889999887642 0 00 1101001122245889999
Q ss_pred EEccccccccCcC-CHHHHHHHHhhhccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec-CCC-CCCCeEEEE
Q 010592 420 HAHGLFSLYKDKC-NIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH-EDG-PLVPEKILV 491 (506)
Q Consensus 420 ~~~~~~~~~~~~~-~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~-~~~-~~~~~~~l~ 491 (506)
..+..-....... --...+..+.|.|+|||.++..-.. .....+.+.+++.--.+..... ... +...+.+++
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~ 232 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTI 232 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEE
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEE
Confidence 9864332211111 1246899999999999999985322 2333444444444333332221 110 112467777
Q ss_pred EEecc
Q 010592 492 AVKQY 496 (506)
Q Consensus 492 ~~k~~ 496 (506)
|.|..
T Consensus 233 aS~~~ 237 (274)
T d1iy9a_ 233 GSKKY 237 (274)
T ss_dssp EESSC
T ss_pred EcCCC
Confidence 77753
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0012 Score=62.27 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=67.6
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----------ccee-ccccccCCCCCCcee
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIY-HDWCEAFSTYPRTYD 417 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----------~~~~-~~~~~~~~~~p~s~D 417 (506)
.....++||=+|-|.|+.+..+.+.. .+.+|+.+|+.+++++++.+--. ...+ .|--+-+...++.||
T Consensus 75 ~~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 75 SHPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred hCcCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 33456889999999999999998753 14688888899999999976420 0011 010011112347999
Q ss_pred EEEEccccccccCcCCH--HHHHHHHhhhccCCcEEEEEe
Q 010592 418 LIHAHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|.+.. +.-......+ ...+..+.|.|+|||.+++.-
T Consensus 154 vIi~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 154 VIITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 999853 3211111111 257999999999999999953
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.56 E-value=0.00045 Score=63.94 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=54.9
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCC---CceeEEE
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYP---RTYDLIH 420 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p---~s~Dlv~ 420 (506)
...+......+||++|||+|.++..|++.+ .+|+++|.++++++.+.++. ....+.-.++++-.++ ..++.|.
T Consensus 22 v~~~~~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv 98 (245)
T d1yuba_ 22 IKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIV 98 (245)
T ss_dssp HHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEE
T ss_pred HHhcCCCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEe
Confidence 344555667889999999999999999875 47999999999998887763 2233334455655544 5666677
Q ss_pred Eccc
Q 010592 421 AHGL 424 (506)
Q Consensus 421 ~~~~ 424 (506)
++-=
T Consensus 99 ~NLP 102 (245)
T d1yuba_ 99 GNIP 102 (245)
T ss_dssp EECC
T ss_pred eeee
Confidence 6433
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.53 E-value=0.0015 Score=57.38 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=62.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eeccccc----cCCCC--CCceeEEEEc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCE----AFSTY--PRTYDLIHAH 422 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~----~~~~~--p~s~Dlv~~~ 422 (506)
.+|||+-||||.++...+.+|. ..|+-+|.+...+..+.+- +... .....+. .+... ...||+|+++
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 3799999999999999999984 5899999998888776653 2211 1111111 11112 2579999993
Q ss_pred cccccccCcCCHHHHHHHHh--hhccCCcEEEEEe
Q 010592 423 GLFSLYKDKCNIEDILLEMD--RILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~--RvLrPgG~~ii~d 455 (506)
-=+. ....+.+|.-+. .+|+|+|.+++.-
T Consensus 123 PPY~----~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 123 PPFH----FNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhHh----hhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 3222 112344555543 5899999999953
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.0062 Score=57.27 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=76.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC----CCCCceeEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS----TYPRTYDLI 419 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~----~~p~s~Dlv 419 (506)
+......+||||+||+|+=+.+|++... ...|++.|.++.-+....++ |+.... -...+.. ..+..||.|
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~-~~~~~~~~~~~~~~~~fd~I 175 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKATV-KQGDGRYPSQWCGEQQFDRI 175 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEE-EECCTTCTHHHHTTCCEEEE
T ss_pred cCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhccccccee-eeccccccchhcccccccEE
Confidence 4555667899999999998777765321 14689999998877755543 432111 1111111 123789999
Q ss_pred EEc------cccccccCcCCHH----------------HHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhc-CCc
Q 010592 420 HAH------GLFSLYKDKCNIE----------------DILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGG-MRW 472 (506)
Q Consensus 420 ~~~------~~~~~~~~~~~~~----------------~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~-~~w 472 (506)
.++ +++. ...++. .+|....+.|||||+++-+. ..+-.+.|+.++++ ..|
T Consensus 176 L~DaPCSg~G~~r---r~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~ 252 (284)
T d1sqga2 176 LLDAPCSATGVIR---RHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA 252 (284)
T ss_dssp EEECCCCCGGGTT---TCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTC
T ss_pred EEeccccccCccc---cccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCc
Confidence 872 3332 222222 48888899999999998853 33455667777665 455
Q ss_pred eE
Q 010592 473 DT 474 (506)
Q Consensus 473 ~~ 474 (506)
+.
T Consensus 253 ~~ 254 (284)
T d1sqga2 253 EL 254 (284)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.50 E-value=0.0054 Score=61.04 Aligned_cols=149 Identities=15% Similarity=0.051 Sum_probs=88.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhC----CC--------eEEEEeecCCCcccHHHHHhc----Cccc-eecccccc-
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSS----KL--------WVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEA- 408 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~----~~--------~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~~- 408 (506)
.+......+|+|-.||+|+|.....+. .. ...++.++|..+.+..+|.-. |... ...-.+++
T Consensus 157 ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~ 236 (425)
T d2okca1 157 CINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDS 236 (425)
T ss_dssp HHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCT
T ss_pred eccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCch
Confidence 344555678999999999997665431 10 012478889988888877643 2211 00111222
Q ss_pred CCCCC-CceeEEEEccccccccC-------------cCCH-HHHHHHHhhhccCCcEEEEEeChh------hHHHHHHHH
Q 010592 409 FSTYP-RTYDLIHAHGLFSLYKD-------------KCNI-EDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIV 467 (506)
Q Consensus 409 ~~~~p-~s~Dlv~~~~~~~~~~~-------------~~~~-~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~ 467 (506)
+...+ ..||+|.++-=|..... ..+. ...+..+...|+|||.+++--+.. ....+++.+
T Consensus 237 l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~L 316 (425)
T d2okca1 237 LEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL 316 (425)
T ss_dssp TTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred hhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHH
Confidence 32333 78999999877752211 1111 247888999999999887743322 345677764
Q ss_pred hcCCceEEEeecC----CCCCCCeEEEEEEec
Q 010592 468 GGMRWDTKMVDHE----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 468 ~~~~w~~~~~~~~----~~~~~~~~~l~~~k~ 495 (506)
-.-++-..++... .+...+-.+|+.+|+
T Consensus 317 l~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~ 348 (425)
T d2okca1 317 LQDFNLHTILRLPTGIFYAQGVKANVLFFSKG 348 (425)
T ss_dssp HHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred HHhcchhHhhcCCcccccCCCCCeEEEEEECC
Confidence 4444433344433 233356778888884
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.44 E-value=0.0052 Score=58.66 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=75.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccce--eccccccCCCCCCceeEEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGI--YHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~--~~~~~~~~~~~p~s~Dlv~~ 421 (506)
+......+|||++||.|+=+.+|++.-.-...+++.|.++.-+....++ |...+ .+.-...++..+..||.|.+
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILv 191 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL 191 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEE
Confidence 3445566899999999996555543211124689999998877755442 44222 22212223334588999887
Q ss_pred c------ccccccc------CcCCHH-------HHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhcCCceE
Q 010592 422 H------GLFSLYK------DKCNIE-------DILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 422 ~------~~~~~~~------~~~~~~-------~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~~~w~~ 474 (506)
+ +++..-. ...++. .+|....+.|||||++|-+. ..+-.+.++.+++...++.
T Consensus 192 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~~ 267 (313)
T d1ixka_ 192 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL 267 (313)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCEE
Confidence 2 2222100 001111 48889999999999888853 3345566777777766553
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.0024 Score=65.62 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=71.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----------------------CcEEEecCccchHHHHHHHH
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----------------------NVIAMSFAPRDSHEAQVQFA 143 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----------------------~v~~vdis~~di~~~~~~~a 143 (506)
...++.+.+++.. ..+.+|+|-.||+|.|.....+. .+.++|+++....-+..+..
T Consensus 150 ~~Iv~~mv~ll~~--~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 150 RPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred cchhHhhhhcccC--ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 3455667777743 34458999999999988665431 36788887754443443333
Q ss_pred HHcCCCeE------EEEeccccC-CCCCCCeeEEEEcCcccc-cC-----------CCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 144 LERGVPAV------IGVLGTIKM-PYASRAFDMAHCSRCLIP-WG-----------AND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 144 ~~~~~~~~------~~~~d~~~l-p~~~~sfDlV~~~~~l~~-~~-----------~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
.. +.... +...+.... ......||+|+++..+-. +. .+. -.++..+.+.|+|||++.+.
T Consensus 228 l~-~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 228 LH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp TT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh-cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 22 22211 111111111 123457999999875421 00 011 25899999999999999998
Q ss_pred cCCC
Q 010592 204 GPPI 207 (506)
Q Consensus 204 ~p~~ 207 (506)
.|..
T Consensus 307 lP~~ 310 (524)
T d2ar0a1 307 VPDN 310 (524)
T ss_dssp EEHH
T ss_pred EehH
Confidence 7643
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.13 E-value=0.0038 Score=56.96 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=56.9
Q ss_pred CCEEEEECCCCChhHHHHhh-------C-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEE
Q 010592 103 VRTALDTGCGVASWGAYLWS-------R-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP----YASRAFDMA 170 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~-------~-~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp----~~~~sfDlV 170 (506)
+.+|||||++.|.-+..+++ . .+.++|+.+.... .+......+.+..+|..... +....+|+|
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCEE
Confidence 45899999999976554432 1 4889999653221 11222345677777754322 335568888
Q ss_pred EEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 171 HCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 171 ~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.-.. |+ ......-+ ++...|++||++++.+.
T Consensus 156 fID~~-H~-~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 156 FIDNA-HA-NTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEESS-CS-SHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred EEcCC-cc-hHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 76432 22 22112222 46689999999999753
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0059 Score=57.15 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=54.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~ 162 (506)
...++.|.+.+... ++..|||||+|.|.++..|+++ .++++++++..+..-...+.... .....+...|+....+
T Consensus 7 ~~i~~kIv~~~~~~--~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 7 PLIINSIIDKAALR--PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHHHTCCC--TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHHhCCC--CCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 34556677776443 3458999999999999999986 58999997754322221221111 1245667777766554
Q ss_pred CCCCeeEEEEcCc
Q 010592 163 ASRAFDMAHCSRC 175 (506)
Q Consensus 163 ~~~sfDlV~~~~~ 175 (506)
+ .++.|+++..
T Consensus 85 ~--~~~~vV~NLP 95 (278)
T d1zq9a1 85 P--FFDTCVANLP 95 (278)
T ss_dssp C--CCSEEEEECC
T ss_pred h--hhhhhhcchH
Confidence 4 3567887653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=95.94 E-value=0.0045 Score=56.56 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=42.4
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG 397 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg 397 (506)
++..+......+||++|||+|.++..|++.+ .+|++++.++++++...++.
T Consensus 13 iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~ 63 (235)
T d1qama_ 13 IMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKL 63 (235)
T ss_dssp HHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHT
T ss_pred HHHhcCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHh
Confidence 4445555667889999999999999999875 57999999999999888774
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0032 Score=58.24 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc---CCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~---~~~~~~~~~d~~~l 160 (506)
...++.|.+.+... ++..|||||||.|.++..|++. .++++++++..+ ...+++ ..+..+...|+...
T Consensus 7 ~~~~~~Iv~~~~~~--~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~-----~~L~~~~~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 7 QFVIDSIVSAINPQ--KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLA-----ARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHHCCC--TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHH-----HHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHHHhcCCC--CCCEEEEECCCchHHHHHHHccCCceEEEEeccchh-----HHHHHHhhhccchhHHhhhhhhh
Confidence 34556677776433 3458999999999999999987 589999965332 222222 23466777777655
Q ss_pred C
Q 010592 161 P 161 (506)
Q Consensus 161 p 161 (506)
.
T Consensus 80 ~ 80 (252)
T d1qyra_ 80 N 80 (252)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.76 E-value=0.021 Score=52.44 Aligned_cols=43 Identities=19% Similarity=0.017 Sum_probs=34.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.....|||-=||+|+-+.+-..-+ .+.+++|.++...++|.+|
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~~lg---R~~ig~El~~~y~~~a~~R 248 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQ 248 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHH
T ss_pred CCCCEEEecCCCCcHHHHHHHHhC---CeEEEEeCCHHHHHHHHHH
Confidence 345579999999999765555433 5899999999999999988
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.029 Score=52.72 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=61.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCC---CCCeeEEE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYA---SRAFDMAH 171 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~---~~sfDlV~ 171 (506)
..+.+|||+.||.|.=+.+|++. .++++|+++.-+ ....+...+.|.. +.+...|...+... .+.||.|+
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~-~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHH-HHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 34568999999999877777653 388999976543 2333444555655 44555555554322 25799999
Q ss_pred E----cCccc-------cc--CCCh----------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 172 C----SRCLI-------PW--GAND----------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~----~~~l~-------~~--~~~~----------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +..-. .| .... ..++..+. .|+|||+++.++-..
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 5 22110 00 0000 12344444 479999999987544
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.58 E-value=0.0098 Score=54.09 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=60.2
Q ss_pred HHHHHHhhhcCCCCCceEEeecCcccHHHHHHHh----CCCeEEEEeecCCCcccHHHHHhc-Cccceecccc---ccCC
Q 010592 339 NAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLGVIYER-GLIGIYHDWC---EAFS 410 (506)
Q Consensus 339 ~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~----~~~~~~~v~~~d~~~~~l~~~~~r-g~~~~~~~~~---~~~~ 410 (506)
.-|..++..+++ .+||.+|++.|+-+..+++ .+ ....++++|..++....+... .-+..+..-+ +.+.
T Consensus 70 ~~~~eli~~~KP---k~ILEIGv~~GgS~~~~a~~l~~~~-~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~ 145 (232)
T d2bm8a1 70 AVYHDMLWELRP---RTIVELGVYNGGSLAWFRDLTKIMG-IDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFE 145 (232)
T ss_dssp HHHHHHHHHHCC---SEEEEECCTTSHHHHHHHHHHHHTT-CCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGG
T ss_pred HHHHHHHHHhCC---CEEEEECCCCchHHHHHHHHHHhcC-CCceEEecCcChhhhhhhhccccceeeeecccccHHHHH
Confidence 335555554443 4799999999986654432 11 124788888865443322111 1111221111 1122
Q ss_pred CCC-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh
Q 010592 411 TYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD 458 (506)
Q Consensus 411 ~~p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~ 458 (506)
.+. ..+|+|+-.+. + . ......-+ ++...|+|||++||-|...
T Consensus 146 ~l~~~~~dlIfID~~-H-~--~~~v~~~~-~~~~lLk~GG~iIveD~i~ 189 (232)
T d2bm8a1 146 HLREMAHPLIFIDNA-H-A--NTFNIMKW-AVDHLLEEGDYFIIEDMIP 189 (232)
T ss_dssp GGSSSCSSEEEEESS-C-S--SHHHHHHH-HHHHTCCTTCEEEECSCHH
T ss_pred HHHhcCCCEEEEcCC-c-c--hHHHHHHH-HHhcccCcCCEEEEEcCCc
Confidence 222 56899887543 2 1 11111112 5668999999999999864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.47 E-value=0.0071 Score=53.48 Aligned_cols=103 Identities=17% Similarity=0.012 Sum_probs=65.9
Q ss_pred CCCCceEEeecCcccH-HHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC------CCCCceeEEEE
Q 010592 350 SGRYRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS------TYPRTYDLIHA 421 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~-~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~------~~p~s~Dlv~~ 421 (506)
.....+||-+|||..+ +++.+++ .+ ...|+.+|.+++.++.|.+.|....+..-.+++. +-+.-+|++.-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~g--a~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLG--AAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhc--ccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 3445689999999955 5555553 33 2478888999999999999886333322112111 12356888875
Q ss_pred ccccccc------cCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 422 HGLFSLY------KDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 422 ~~~~~~~------~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
...+... .........|.++.+++||||.+++.
T Consensus 101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 4433211 01112346899999999999999984
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.43 E-value=0.0084 Score=58.03 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=62.1
Q ss_pred CEEEEECCCCChhHHHHhhC--------------------CcEEEecCccchHHHHHHHHHHcC-CCeEEE--Ee-cccc
Q 010592 104 RTALDTGCGVASWGAYLWSR--------------------NVIAMSFAPRDSHEAQVQFALERG-VPAVIG--VL-GTIK 159 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--------------------~v~~vdis~~di~~~~~~~a~~~~-~~~~~~--~~-d~~~ 159 (506)
-+|.|+||.+|..+..+.+. .|.--|+-.+|...-...+..... .+..+. +. ....
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 56999999999665332221 244557777777544333322221 112222 22 2234
Q ss_pred CCCCCCCeeEEEEcCcccccCCC------------------h---------------HHHHHHHHHhcCCCeEEEEEc
Q 010592 160 MPYASRAFDMAHCSRCLIPWGAN------------------D---------------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~------------------~---------------~~~l~e~~rvLkPGG~li~~~ 204 (506)
--||++|.|+++|+.++ ||... + ..+|+-=.+-|+|||.++++.
T Consensus 133 rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 44789999999999988 66431 0 147777788899999999975
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.042 Score=55.91 Aligned_cols=149 Identities=12% Similarity=0.041 Sum_probs=84.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHh----CCC-------------eEEEEeecCCCcccHHHHHhc----Ccccee-cc
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQS----SKL-------------WVMNVVPTLADKNTLGVIYER----GLIGIY-HD 404 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~----~~~-------------~~~~v~~~d~~~~~l~~~~~r----g~~~~~-~~ 404 (506)
.+......+|+|-.||+|+|.....+ ... ...++.+.|..+.+..+|.-. |..... +.
T Consensus 159 ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~ 238 (524)
T d2ar0a1 159 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 238 (524)
T ss_dssp HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGT
T ss_pred cccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccccccc
Confidence 34455566899999999999765432 110 012477888888888877643 211110 00
Q ss_pred c---cccCCC----CCCceeEEEEcccccccc----------CcCCHH-HHHHHHhhhccCCcEEEEEeChh------hH
Q 010592 405 W---CEAFST----YPRTYDLIHAHGLFSLYK----------DKCNIE-DILLEMDRILRPEGAIIIRDEVD------EI 460 (506)
Q Consensus 405 ~---~~~~~~----~p~s~Dlv~~~~~~~~~~----------~~~~~~-~~l~e~~RvLrPgG~~ii~d~~~------~~ 460 (506)
. ...+-. ....||+|.++-=|.... ...+.. ..|.-+.+.|+|||++.|--+.. ..
T Consensus 239 ~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~ 318 (524)
T d2ar0a1 239 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 318 (524)
T ss_dssp BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH
T ss_pred chhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhh
Confidence 0 011111 116799999977665211 111222 37888999999999988853322 33
Q ss_pred HHHHHHHhcCCceEEEeecC----CCCCCCeEEEEEEec
Q 010592 461 IKVKKIVGGMRWDTKMVDHE----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 461 ~~~~~~~~~~~w~~~~~~~~----~~~~~~~~~l~~~k~ 495 (506)
..+++.+-.-++-..++... .+...+-.||+.+|.
T Consensus 319 ~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~ 357 (524)
T d2ar0a1 319 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 357 (524)
T ss_dssp HHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEB
T ss_pred HHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECC
Confidence 56777544434433344443 233356788888873
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.042 Score=46.97 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=65.2
Q ss_pred HHHHHhhhcCCCCCceEEeecC--cccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC------C
Q 010592 340 AYKKINRLLDSGRYRNIMDMNA--GFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS------T 411 (506)
Q Consensus 340 ~y~~~~~~~~~~~~r~vLD~gc--G~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~------~ 411 (506)
-|..+.......+..+||=.|| |.|.++..+++.- ..+|+.++.+++.++.+.+-|....+..-.+++. +
T Consensus 16 A~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 16 AYRALIHSACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYV 93 (174)
T ss_dssp HHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEecccccccccccccccc--CcccccccccccccccccccCcccccccccccHHHHhhhhh
Confidence 3444444333344568999997 4566666665531 2467777778788899988875333322112211 1
Q ss_pred CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 412 ~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
-++.+|+|.. |.-...+.+..++|||||.++.-
T Consensus 94 ~~~g~d~v~d----------~~g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 94 GEKGIDIIIE----------MLANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CTTCEEEEEE----------SCHHHHHHHHHHHEEEEEEEEEC
T ss_pred ccCCceEEee----------cccHHHHHHHHhccCCCCEEEEE
Confidence 2377999987 22245788888999999999983
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.69 E-value=0.023 Score=55.34 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=62.8
Q ss_pred CCEEEEECCCCChhHHHHhh-C---CcEEEecCccchHHHHHHHHHHcCCC----------------eEEEEeccccCCC
Q 010592 103 VRTALDTGCGVASWGAYLWS-R---NVIAMSFAPRDSHEAQVQFALERGVP----------------AVIGVLGTIKMPY 162 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~-~---~v~~vdis~~di~~~~~~~a~~~~~~----------------~~~~~~d~~~lp~ 162 (506)
+.+|||..||+|..+...+. . .|++.|+++..+.... +....++.. ......|...+..
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~-~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK-RNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH-HHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHH-HHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 45899999999998886543 3 4788899885443333 333333322 1222333322221
Q ss_pred -CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 163 -ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 163 -~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
....||+|..-. + ..+..+|..+.+.++.||+|.++..
T Consensus 125 ~~~~~fDvIDiDP----f-Gs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----C-CCcHHHHHHHHHHhccCCEEEEEec
Confidence 245799998743 3 2357899999999999999999753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.013 Score=50.23 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=58.2
Q ss_pred CCCceEEeecCc-ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccc--cCCCCCCceeEEEEcccccc
Q 010592 351 GRYRNIMDMNAG-FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE--AFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 351 ~~~r~vLD~gcG-~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~--~~~~~p~s~Dlv~~~~~~~~ 427 (506)
....+||-+||| .|.++..+++. ...+|+.+|.+++.++.+++-|....+...-+ ......+.||+|...-.-.
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~- 102 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL- 102 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS-
T ss_pred CCCCEEEEECCCCcchhHHHHhhh--ccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC-
Confidence 345679999999 45555555542 22578888999899999988775333321111 1112347899776521111
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+. ..+....++|||||++++-
T Consensus 103 --~~----~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 103 --TD----IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp --TT----CCTTTGGGGEEEEEEEEEC
T ss_pred --cc----chHHHHHHHhhccceEEEe
Confidence 00 1244567999999999983
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.37 E-value=0.073 Score=47.90 Aligned_cols=43 Identities=12% Similarity=-0.005 Sum_probs=35.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.....|||-=||+|+-+.+-.+.+ .+.+++|.+++-+++|.+|
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~~---R~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHcC---CeEEEEeCCHHHHHHHHHH
Confidence 445689999999999776666654 6899999999999999887
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.24 E-value=0.059 Score=45.69 Aligned_cols=93 Identities=16% Similarity=0.038 Sum_probs=59.9
Q ss_pred CCCceEEeecCcc-cHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceec-c--------ccccCC-CCCCceeEE
Q 010592 351 GRYRNIMDMNAGF-GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH-D--------WCEAFS-TYPRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~-G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~-~--------~~~~~~-~~p~s~Dlv 419 (506)
....+||=+|||. |.++..+++.- ..+|+.+|.+++-++.|++-|....+. + +.+.+. ...+-+|+|
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 3445799999995 44555555422 258999999999999999877422221 0 000110 123568887
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.- -..-+..+....++|||||++++-
T Consensus 103 id---------~~g~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 103 ID---------CSGNEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp EE---------CSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred ee---------cCCChHHHHHHHHHHhcCCceEEE
Confidence 74 123356888899999999999994
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.05 E-value=0.024 Score=48.73 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=65.1
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHH-Hh-CCCeEEEEeecCCCcccHHHHHhcCccceecc----ccccCCC-CC
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAI-QS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHD----WCEAFST-YP 413 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l-~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~----~~~~~~~-~p 413 (506)
|..++...+..+..+||=+|||.-++++.. ++ .+. -.|+.+|.+++-++.+.+-|....+.. +.+.+.. .+
T Consensus 17 ~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~--~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~ 94 (174)
T d1f8fa2 17 AGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITD 94 (174)
T ss_dssp HHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCEEEEeCCCHHHhhhhhccccccc--ceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcC
Confidence 444444444455667888999877754443 32 232 356677888889999988775333321 1111111 24
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+.||+|.- -..-+..+.+..++|||+|.+++-
T Consensus 95 gg~D~vid---------~~G~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 95 GGVNFALE---------STGSPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp SCEEEEEE---------CSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEE---------cCCcHHHHHHHHhcccCceEEEEE
Confidence 67998874 123356888999999999999983
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.1 Score=48.80 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=64.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCC-CC--CceeE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FST-YP--RTYDL 418 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~-~p--~s~Dl 418 (506)
......+||||+||+|+=+.+|++.-.-...|+++|.++.-+....++ |+. .+.-..++ +.. .+ ..||.
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccccccceeeE
Confidence 344566799999999997776654100013689999997777655443 431 11111222 222 22 67999
Q ss_pred EEEc------ccccccc------CcC--CHH-------HHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhcC
Q 010592 419 IHAH------GLFSLYK------DKC--NIE-------DILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGGM 470 (506)
Q Consensus 419 v~~~------~~~~~~~------~~~--~~~-------~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~~ 470 (506)
|.++ +++..-. ... .+. .+|.... .|+|||+|+-+. ..+-.+.|+.++++.
T Consensus 170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~~ 245 (293)
T d2b9ea1 170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQN 245 (293)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHhC
Confidence 9874 2221100 001 111 2333333 479999877742 334556677777653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.022 Score=52.36 Aligned_cols=50 Identities=4% Similarity=0.148 Sum_probs=40.5
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG 397 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg 397 (506)
...+.......||.+|||+|.++..|++.+ -+|++++.++.+++...++.
T Consensus 14 v~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~ 63 (252)
T d1qyra_ 14 VSAINPQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHP 63 (252)
T ss_dssp HHHHCCCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCT
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHh
Confidence 334445567789999999999999999976 47999999988888887763
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.11 E-value=0.13 Score=43.34 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=59.4
Q ss_pred CCCEEEEECCC-CChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC--------C-CCCCCee
Q 010592 102 TVRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM--------P-YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~-~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l--------p-~~~~sfD 168 (506)
++.+||=+||| .|.++..+++. + ++++|.+ +...+.+++.+....+........ . ...+.+|
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~-----~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS-----PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchH-----HHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 45589999998 56666666654 3 5666653 456678887776554432221110 0 1134689
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+|+-.-. ....+..+.++|+|||.+++.+.+
T Consensus 101 ~vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 101 VTIDCSG-------NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EEEECSC-------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eeeecCC-------ChHHHHHHHHHHhcCCceEEEecC
Confidence 9885321 246789999999999999997643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.09 E-value=0.038 Score=47.03 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=57.1
Q ss_pred CCCCEEEEECCC-CChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCCCCeeEEEEcCc
Q 010592 101 GTVRTALDTGCG-VASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MPYASRAFDMAHCSRC 175 (506)
Q Consensus 101 ~~~~~VLDiGCG-~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~-lp~~~~sfDlV~~~~~ 175 (506)
.++.+||-+|+| .|.++..+++. .++++|.++. ..+.+++.|....+...+... ..-..+.||.|+..-.
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~-----k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR-----KREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST-----THHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccccccccccchh-----HHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 345589999998 66777777654 4667777653 345666667654433221111 1112457999886422
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+ ...+....++|+|||.+++.+
T Consensus 101 ~~~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 101 SLT-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CST-----TCCTTTGGGGEEEEEEEEECC
T ss_pred CCc-----cchHHHHHHHhhccceEEEec
Confidence 111 112456789999999999975
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.056 Score=50.19 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=48.8
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--C--ccceeccccccCCCCC-CceeEEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--G--LIGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r--g--~~~~~~~~~~~~~~~p-~s~Dlv~~ 421 (506)
.+......+||++|+|+|.++..|++.+ .+|++++.++++++...++ + ....+.-...++-.++ ..++.|.+
T Consensus 16 ~~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~~~vV~ 92 (278)
T d1zq9a1 16 KAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVA 92 (278)
T ss_dssp HTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEE
T ss_pred HhCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhhhhhhhc
Confidence 3444556789999999999999999875 4788999998888877654 1 1122222234554444 45566666
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.067 Score=45.49 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=61.2
Q ss_pred CCCceEEeecCcccHHHHHHHh--CCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC--------CCCCceeEEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS--------TYPRTYDLIH 420 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~--~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~--------~~p~s~Dlv~ 420 (506)
....+||=+|||+.+..+.+.. .+ ..+|+.+|.+++-++.|.+-|....+..-.+++. +.+..+|+|.
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence 3445799999998876555433 33 2378999999999999988775322211111110 1235688887
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
- -..-+..+......|||||++++
T Consensus 103 d---------~~G~~~~~~~a~~~~~~gG~iv~ 126 (171)
T d1pl8a2 103 E---------CTGAEASIQAGIYATRSGGTLVL 126 (171)
T ss_dssp E---------CSCCHHHHHHHHHHSCTTCEEEE
T ss_pred e---------ccCCchhHHHHHHHhcCCCEEEE
Confidence 6 12335688889999999999999
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.39 Score=40.52 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=56.7
Q ss_pred CCCEEEEECC--CCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccc---cC--CCCCCCeeEEE
Q 010592 102 TVRTALDTGC--GVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KM--PYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGC--G~G~~~~~L~~~-~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~---~l--p~~~~sfDlV~ 171 (506)
++.+||-.|+ |.|..+..+++. + +++++-+ +...+.+++.|....+...+.. .+ ......||+|+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~-----~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGT-----EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEeccccccccccccccccCccccccccc-----ccccccccccCcccccccccccHHHHhhhhhccCCceEEe
Confidence 4559999997 456677777764 4 4444332 3455677777765443221110 00 12346799999
Q ss_pred EcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..- ....+....++|+|+|.++..+
T Consensus 103 d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 103 EML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred ecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 742 1346888999999999999864
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.70 E-value=0.039 Score=53.59 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=62.8
Q ss_pred CceEEeecCcccHHHHHH-HhCCCeEEEEeecCCCcccHHHHHhcC-ccce-----------------ecccccc----C
Q 010592 353 YRNIMDMNAGFGGFAAAI-QSSKLWVMNVVPTLADKNTLGVIYERG-LIGI-----------------YHDWCEA----F 409 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l-~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~-----------------~~~~~~~----~ 409 (506)
..+|||+.||+|.++.+. .+.++ -.|+..|.+++.++.+.+.- +.+. ...-+.+ +
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 457999999999999865 44443 47999999999999887541 1000 0000111 1
Q ss_pred CCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 410 STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 410 ~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
..-...||+|..+. | -.....|.-.-|.+|.||.|.|+-
T Consensus 124 ~~~~~~fDvIDiDP-f------Gs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 124 AERHRYFHFIDLDP-F------GSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHSTTCEEEEEECC-S------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhcCcCCcccCCC-C------CCcHHHHHHHHHHhccCCEEEEEe
Confidence 11235799999833 2 234568888889999999999963
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.51 E-value=0.26 Score=41.85 Aligned_cols=104 Identities=10% Similarity=-0.010 Sum_probs=63.5
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-------CCC
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-------TYP 413 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-------~~p 413 (506)
|..++.........+||=+|||..++.+....+-.-..+|+.+|.+++-++.|.+-|....+..-.++.. +-+
T Consensus 16 ~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 16 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcC
Confidence 4444443334445689999999888765543321123579999999999999999886444422112211 123
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccC-CcEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRP-EGAIII 453 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrP-gG~~ii 453 (506)
+-+|.|.- -......+.+..+.|++ +|.+++
T Consensus 96 ~G~d~vid---------~~g~~~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 96 GGVDYAVE---------CAGRIETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp SCBSEEEE---------CSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred CCCcEEEE---------cCCCchHHHHHHHHHHHhcCceEE
Confidence 56787775 11234566666666655 699888
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.35 E-value=0.074 Score=51.13 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=61.0
Q ss_pred ceEEeecCcccHHHH--------HHHh-------CCCeEEEEeecCCCcccHHHHHhcCc-----cc--eeccccccCCC
Q 010592 354 RNIMDMNAGFGGFAA--------AIQS-------SKLWVMNVVPTLADKNTLGVIYERGL-----IG--IYHDWCEAFST 411 (506)
Q Consensus 354 r~vLD~gcG~G~~~~--------~l~~-------~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~--~~~~~~~~~~~ 411 (506)
-+|.|+||..|.-+. ++.+ .......|.--|.+.|--...+..-. .+ .+..+...|-.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 468999999998652 2221 12346788888888777766664310 00 00001122211
Q ss_pred --CC-CceeEEEEccccccccCc-C-----------------------------CHHHHHHHHhhhccCCcEEEE
Q 010592 412 --YP-RTYDLIHAHGLFSLYKDK-C-----------------------------NIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 412 --~p-~s~Dlv~~~~~~~~~~~~-~-----------------------------~~~~~l~e~~RvLrPgG~~ii 453 (506)
+| +|.|++||+..++++.+. + |+..+|.-=.+-|+|||.+++
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 207 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 56 999999999999875421 1 111355555677899999999
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.91 E-value=0.28 Score=42.57 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=60.0
Q ss_pred CCCEEEEECCCC-ChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 010592 102 TVRTALDTGCGV-ASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~-G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfD 168 (506)
++.+||-+|||. |..+..+++. .++++|.++ ...+.|++.|....+ +....+ .....+|
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~-----~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g~g~D 96 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP-----ARLAHAKAQGFEIAD---LSLDTPLHEQIAALLGEPEVD 96 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc-----hhhHhhhhccccEEE---eCCCcCHHHHHHHHhCCCCcE
Confidence 455999999997 5566666653 367777743 556778877754322 221111 1234699
Q ss_pred EEEEcCccc------c--cCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLI------P--WGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~------~--~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++-.-... + ........++.+.++++|||.+++.+
T Consensus 97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 999532110 0 11123578999999999999999975
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.76 E-value=0.29 Score=41.65 Aligned_cols=104 Identities=6% Similarity=-0.016 Sum_probs=62.5
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-------CCC
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-------TYP 413 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-------~~p 413 (506)
|..+..........+|+=+|||..+..+....+-.-..+|+.+|.+++.++.|++-|-...++.-..+-. +.+
T Consensus 18 ~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 18 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTG 97 (176)
T ss_dssp HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcc
Confidence 3334333334455689999999877655443321112589999999999999999986444432211111 133
Q ss_pred CceeEEEEccccccccCcCCHHHHHHH-HhhhccCCcEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLE-MDRILRPEGAIII 453 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e-~~RvLrPgG~~ii 453 (506)
+-+|++.- -..-...+.+ +..++|++|.+++
T Consensus 98 ~G~d~vi~---------~~g~~~~~~~a~~~~~~~~G~~v~ 129 (176)
T d1d1ta2 98 NNVGYTFE---------VIGHLETMIDALASCHMNYGTSVV 129 (176)
T ss_dssp SCCCEEEE---------CSCCHHHHHHHHTTSCTTTCEEEE
T ss_pred ccceEEEE---------eCCchHHHHHHHHHhhcCCeEEEE
Confidence 66887764 2233444555 4455566699988
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.72 E-value=0.099 Score=46.98 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=44.8
Q ss_pred CCCCC-CceeEEEEcccccc----ccCcCC-------HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 409 FSTYP-RTYDLIHAHGLFSL----YKDKCN-------IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 409 ~~~~p-~s~Dlv~~~~~~~~----~~~~~~-------~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
+..+| +|+|+|+++-=+.. +....+ +...+.|+.|+|||||.+++-........+...+...+|...
T Consensus 16 l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 94 (256)
T d1g60a_ 16 LDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQ 94 (256)
T ss_dssp HHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEEE
T ss_pred HhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhhhhhhhcccceee
Confidence 34455 89999999543321 111112 235899999999999999876655556667777777788754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.63 E-value=0.14 Score=43.67 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=57.9
Q ss_pred CCCEEEEECCCC-ChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc------ccCCCCCCCeeEE
Q 010592 102 TVRTALDTGCGV-ASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT------IKMPYASRAFDMA 170 (506)
Q Consensus 102 ~~~~VLDiGCG~-G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~------~~lp~~~~sfDlV 170 (506)
++.+||=+|||. |.++..+++. .|+++|.+ +...+.+++.|....+...+. .++ .....||+|
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~-----~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~-t~g~G~D~v 100 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR-----PICVEAAKFYGATDILNYKNGHIEDQVMKL-TNGKGVDRV 100 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC-----HHHHHHHHHHTCSEEECGGGSCHHHHHHHH-TTTSCEEEE
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccch-----hhhHHHHHhhCccccccccchhHHHHHHHH-hhccCcceE
Confidence 345788899985 7778888775 46777764 345667777775433321111 011 123459999
Q ss_pred EEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 171 HCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 171 ~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+-.-.. ...+.+..++|+|+|.+++.+
T Consensus 101 id~~g~-------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 101 IMAGGG-------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred EEccCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 864321 246788899999999999965
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.51 E-value=0.29 Score=41.70 Aligned_cols=103 Identities=8% Similarity=-0.113 Sum_probs=65.0
Q ss_pred HHHHhhhcCCCCCceEEeecCcc-cHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-------CC
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGF-GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-------TY 412 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~-G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-------~~ 412 (506)
|..+..........+||=+|||. |.++..+++. .-.-.|+.+|.++.-++.|.+-|....+..-..+-. +.
T Consensus 17 ~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~-~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 17 YGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKI-AGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELT 95 (174)
T ss_dssp HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHH-hCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhh
Confidence 44443323334456799999998 4455555442 112478888999899999999886444322111100 12
Q ss_pred CCceeEEEEccccccccCcCCHHHHHHHHhhhccCC-cEEEE
Q 010592 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPE-GAIII 453 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPg-G~~ii 453 (506)
++-+|+|.= -..-+.++.+..+.|||| |.+++
T Consensus 96 ~~G~d~vie---------~~G~~~~~~~a~~~~~~g~G~~v~ 128 (174)
T d1e3ia2 96 AGGVDYSLD---------CAGTAQTLKAAVDCTVLGWGSCTV 128 (174)
T ss_dssp TSCBSEEEE---------SSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred cCCCcEEEE---------ecccchHHHHHHHHhhcCCeEEEe
Confidence 356788764 123466899999999997 99998
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=91.39 E-value=0.11 Score=44.62 Aligned_cols=103 Identities=22% Similarity=0.182 Sum_probs=64.6
Q ss_pred HHHHhhhcCCCCCceEEeecCcc-cHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcCccceecccccc-------CCC
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-------FST 411 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~-G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~-------~~~ 411 (506)
|..+..........+||-+|||. |.++..+++. | ..+|+.+|.+++.++.+.+-|.-..+....++ +..
T Consensus 17 ~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~ 94 (182)
T d1vj0a2 17 YHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMD 94 (182)
T ss_dssp HHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEECCCccchhheecccccc--cccccccccccccccccccccceEEEeccccchHHHHHHHHH
Confidence 44443322334457899999984 5566666653 3 23789999999999999887742222211121 111
Q ss_pred --CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 412 --YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 412 --~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.+..+|+|.-.. .-+..+....+.|||||.+++-
T Consensus 95 ~~~~~g~Dvvid~v---------G~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 95 ITHGRGADFILEAT---------GDSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HTTTSCEEEEEECS---------SCTTHHHHHHHHEEEEEEEEEC
T ss_pred hhCCCCceEEeecC---------CchhHHHHHHHHhcCCCEEEEE
Confidence 125699887511 1133788888999999999873
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.34 E-value=0.23 Score=41.99 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=60.1
Q ss_pred CCceEEeecCcccHHHHH-HHh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-----CCCCceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAA-IQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-----TYPRTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~-l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-----~~p~s~Dlv~~~~~ 424 (506)
+..+||=+|||..+..+. +++ .+ ...|+.+|.+++-++.+++-|....+..-.+.+. +-++-+|+|.-
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g--~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid--- 106 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMT--PATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMD--- 106 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHC--CCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEE---
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhc--CcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEE---
Confidence 346799999998876543 332 23 2467888888888899888775333322111111 12256898885
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
-..-...+....++|||||++++-
T Consensus 107 ------~~g~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 107 ------FVGSQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp ------SSCCHHHHHHGGGGEEEEEEEEEC
T ss_pred ------ecCcchHHHHHHHHHhCCCEEEEE
Confidence 223355789999999999999983
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.61 E-value=0.28 Score=41.81 Aligned_cols=91 Identities=22% Similarity=0.360 Sum_probs=57.0
Q ss_pred CCCEEEEECCC-CChhHHHHhhC-C---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccc--c----C-C-CCCCCee
Q 010592 102 TVRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--K----M-P-YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~-~---v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~--~----l-p-~~~~sfD 168 (506)
++.+||-+||| .|.++..+++. + |+++|.++ ...+.+++.|....+...+.. . + . .....+|
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~-----~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~D 102 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP-----NRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGAD 102 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCCccchhheeccccccccccccccccc-----ccccccccccceEEEeccccchHHHHHHHHHhhCCCCce
Confidence 45699999997 36667677654 3 56666643 555677777754443221110 0 0 0 1234699
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|+..-.- ...++.+.+.|+|||.+++.+
T Consensus 103 vvid~vG~-------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 103 FILEATGD-------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred EEeecCCc-------hhHHHHHHHHhcCCCEEEEEe
Confidence 99864211 346788999999999998864
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.24 E-value=0.48 Score=40.17 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=61.0
Q ss_pred CCCCEEEEECCCC-ChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC------CCCCCCeeE
Q 010592 101 GTVRTALDTGCGV-ASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM------PYASRAFDM 169 (506)
Q Consensus 101 ~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l------p~~~~sfDl 169 (506)
.++.+||=+|||. |.++..+++. .++++|.++ ...+.+++-|....+........ -...+.+|+
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~-----~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING-----EKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-----GGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch-----HHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 3455899999986 7777777765 366777755 34567777776544321111111 012456899
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCC-eEEEEEcCC
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPG-GYWVLSGPP 206 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPG-G~li~~~p~ 206 (506)
|+-.-. ....+.+..+.|+|| |.+++.+.+
T Consensus 102 vie~~G-------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 102 SLDCAG-------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp EEESSC-------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred EEEecc-------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 985321 256789999999996 999997643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.24 E-value=0.42 Score=40.39 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=59.1
Q ss_pred HHhhCCCCCCCCCEEEEECCCCC-hhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC-----C
Q 010592 92 LASVIPIKNGTVRTALDTGCGVA-SWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-----P 161 (506)
Q Consensus 92 l~~~l~~~~~~~~~VLDiGCG~G-~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l-----p 161 (506)
+.+.... .++.+||=+|||.- ..+..+++. .+.++|.+ +...+.+++.|....+. .+..+. .
T Consensus 20 ~~~~~~~--~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~-----~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~ 91 (174)
T d1f8fa2 20 CINALKV--TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV-----ESRLELAKQLGATHVIN-SKTQDPVAAIKE 91 (174)
T ss_dssp HHTTTCC--CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC-----HHHHHHHHHHTCSEEEE-TTTSCHHHHHHH
T ss_pred HHHhhCC--CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccH-----HHHHHHHHHcCCeEEEe-CCCcCHHHHHHH
Confidence 3444433 34558999999743 455555543 24555654 35566777777644332 121111 1
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.++.||+|+-.-. ....++.+.++++|+|.+++.+
T Consensus 92 ~t~gg~D~vid~~G-------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 92 ITDGGVNFALESTG-------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HTTSCEEEEEECSC-------CHHHHHHHHHTEEEEEEEEECC
T ss_pred HcCCCCcEEEEcCC-------cHHHHHHHHhcccCceEEEEEe
Confidence 23457999985321 2567889999999999999975
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.72 E-value=0.15 Score=42.97 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCCceEEeecCcc-cHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEcccccc
Q 010592 351 GRYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSL 427 (506)
Q Consensus 351 ~~~r~vLD~gcG~-G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~~ 427 (506)
....+||=+|||. |.++..+++ .| .+++.+|.+++-++.+.+-|....+....+...... +.||.+.-..
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~G---a~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~---- 101 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMG---AHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV---- 101 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC----
T ss_pred CCCCEEEEeccchHHHHHHHHhhccc---ccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeee----
Confidence 3456788789875 445555555 34 456677778788888888775333322222221122 6799877511
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.-...+....++|+|||.+++-
T Consensus 102 -----g~~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 102 -----AAPHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp -----SSCCCHHHHHTTEEEEEEEEEC
T ss_pred -----ecchhHHHHHHHHhcCCEEEEe
Confidence 1122466777899999999994
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.55 E-value=0.38 Score=40.61 Aligned_cols=115 Identities=10% Similarity=0.136 Sum_probs=71.4
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCc--ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceec-
Q 010592 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAG--FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH- 403 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG--~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~- 403 (506)
|++-....-..+--|..+.......+..+||=.|+| .|.++..|++. ...+|+.++.+++.++.+++-|....+.
T Consensus 3 fe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~ 80 (179)
T d1qora2 3 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAWQVINY 80 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHhcCCeEEEEC
Confidence 344444444455556555443233344688888665 45566666653 3468999999989999998888432221
Q ss_pred ---cccccCCC--CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 404 ---DWCEAFST--YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 404 ---~~~~~~~~--~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++.+.+-. -+.-+|+|.... . ...+....+.|+|+|.+++
T Consensus 81 ~~~d~~~~v~~~t~g~g~d~v~d~~---------g-~~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 81 REEDLVERLKEITGGKKVRVVYDSV---------G-RDTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp TTSCHHHHHHHHTTTCCEEEEEECS---------C-GGGHHHHHHTEEEEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCeEEEEeCc---------c-HHHHHHHHHHHhcCCeeee
Confidence 22222211 247899888611 1 2367888999999999887
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.14 E-value=0.93 Score=38.01 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=64.2
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC-------CCCC
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-------STYP 413 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~-------~~~p 413 (506)
|..+....+.....+||=+|||.++..+.+..+.....+|+.+|.+++-++.+.+.|....++...++- .+.+
T Consensus 17 y~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2jhfa2 17 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSN 96 (176)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhc
Confidence 444444333444567999999877755444332223468999999999999999998654443221110 0123
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCC-cEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPE-GAIII 453 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPg-G~~ii 453 (506)
+-+|++.- -......+......+++| |.+++
T Consensus 97 ~G~D~vid---------~~G~~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 97 GGVDFSFE---------VIGRLDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp SCBSEEEE---------CSCCHHHHHHHHHHBCTTTCEEEE
T ss_pred CCCCEEEe---------cCCchhHHHHHHHHHhcCCcceEE
Confidence 56898876 112345677777888886 56666
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.84 E-value=0.48 Score=39.78 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=58.1
Q ss_pred CCCEEEEECCCCC-hhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc------CC-CCCCCeeE
Q 010592 102 TVRTALDTGCGVA-SWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK------MP-YASRAFDM 169 (506)
Q Consensus 102 ~~~~VLDiGCG~G-~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~------lp-~~~~sfDl 169 (506)
++.+||=+|||.. .++..++.. .++++|.+ +...+.+++.|........+... +. -....+|+
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~-----~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv 100 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS-----ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 100 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC-----HHHHHHHHHhCCcccccccccccccccccccccCCCCceE
Confidence 4458999999754 455555543 36666664 45667888877654443221110 00 01246899
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+..-. ....++.+.+.+++||.+++.+.
T Consensus 101 vid~~G-------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 101 TIECTG-------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp EEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEeccC-------CchhHHHHHHHhcCCCEEEEEec
Confidence 886431 25678999999999999999764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.45 E-value=0.29 Score=40.80 Aligned_cols=93 Identities=14% Similarity=0.008 Sum_probs=58.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC----C-CCCceeEEEEcccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS----T-YPRTYDLIHAHGLF 425 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~----~-~p~s~Dlv~~~~~~ 425 (506)
.+..+||=.|||.-++++....+ .+...|+.++.+++-++.+++-|....+..-.+++. . .++.+|.|.+.
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~-~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--- 101 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA--- 101 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS---
T ss_pred CCCCEEEEeecccchhhhhHHHh-cCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec---
Confidence 34467888999988765544332 122468888999899999988775333321111111 1 12345555441
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.-...+....+.|||||.+++.
T Consensus 102 -------~~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 102 -------VSKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp -------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred -------CCHHHHHHHHHHhccCCceEec
Confidence 1245789999999999999993
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.41 E-value=0.4 Score=40.56 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=62.5
Q ss_pred HHHHHhhhcCCCCCceEEeecC--cccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC------
Q 010592 340 AYKKINRLLDSGRYRNIMDMNA--GFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST------ 411 (506)
Q Consensus 340 ~y~~~~~~~~~~~~r~vLD~gc--G~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~------ 411 (506)
-|..+.......+..+||=.|+ |.|.++..|++. ...+|+.++.+++-++.+.+.|....+....+++..
T Consensus 13 A~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~--~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 13 AWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELT 90 (183)
T ss_dssp HHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCEEEEECCCCCcccccchhhcc--ccccceeeecccccccccccccccccccCCccCHHHHHHHHh
Confidence 3444444333344567887663 455666666653 224666666666788888887753333221222211
Q ss_pred CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 412 ~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
-++-||+|+.. .. ...+.+..++|||+|+++.-
T Consensus 91 ~~~g~d~v~d~--------~g--~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 91 DGYGVDVVLNS--------LA--GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTCCEEEEEEC--------CC--THHHHHHHHTEEEEEEEEEC
T ss_pred CCCCEEEEEec--------cc--chHHHHHHHHhcCCCEEEEE
Confidence 23679999971 11 24778889999999999983
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.04 E-value=0.39 Score=40.28 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=55.2
Q ss_pred CCCEEEEECCC-CChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~-~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
++.+||=+||| .|.++..+++. + +++++.++. ..+.+++.|....+...+........+.+|.|+..-..
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~-----~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~- 103 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA-----KREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA- 103 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG-----GHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS-
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchh-----HHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec-
Confidence 45589989986 45677777664 4 455555432 33566666665443322111111223579999864321
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...+....++|+|||.+++.+
T Consensus 104 ------~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 104 ------PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp ------CCCHHHHHTTEEEEEEEEECC
T ss_pred ------chhHHHHHHHHhcCCEEEEec
Confidence 123678889999999999975
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.82 E-value=0.32 Score=40.82 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=59.5
Q ss_pred CCCCCceEEeecC-c-ccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccC------CCCCCceeEE
Q 010592 349 DSGRYRNIMDMNA-G-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF------STYPRTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gc-G-~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~------~~~p~s~Dlv 419 (506)
+.....+||=+|| | .|.++..+++ .+. ..|+.++.+++-++.+.+-|....+..-.+++ .+.+..||+|
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~v 101 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAV 101 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCCCEEEEEeccccceeeeeeccccccc--ccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhh
Confidence 3445578999997 4 4444444443 332 46888888888899988877422221101111 0134679988
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.. -..-+..+....+.|||||.+++-
T Consensus 102 id---------~~g~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 102 ID---------LNNSEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EE---------SCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred hc---------ccccchHHHhhhhhcccCCEEEEe
Confidence 86 123356788889999999999984
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.65 E-value=0.32 Score=40.66 Aligned_cols=91 Identities=12% Similarity=0.000 Sum_probs=56.2
Q ss_pred CCCceEEeecCcccHHHH-HHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC----CC-CCCceeEEEEccc
Q 010592 351 GRYRNIMDMNAGFGGFAA-AIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF----ST-YPRTYDLIHAHGL 424 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~-~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~----~~-~p~s~Dlv~~~~~ 424 (506)
....+||=+|||.=++++ .+++.- ..+|+.+|.+++.++.+++-|....+..-.+++ .. ..+.+|.|.+
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~--- 100 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVT--- 100 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEEC---
T ss_pred CCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccc---
Confidence 345678889998766543 333321 257899999989999998887533332111111 00 1133444444
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
+.-...+....+.|||||++++
T Consensus 101 -------~~~~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 101 -------AVSNSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp -------CSCHHHHHHHHTTEEEEEEEEE
T ss_pred -------cccchHHHHHHHHhcCCcEEEE
Confidence 1224578888899999999998
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=84.46 E-value=0.49 Score=40.07 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=59.2
Q ss_pred CCceEEeecCcc-cHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc----CCC-CC-CceeEEEEccc
Q 010592 352 RYRNIMDMNAGF-GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA----FST-YP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~-G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~----~~~-~p-~s~Dlv~~~~~ 424 (506)
...+||=+|||. |.++..+++.-. .-+|+.+|.+++-++.+.+-|....++.-.++ +-. .+ .-+|+|.-..
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~- 104 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG- 104 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS-
T ss_pred CCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc-
Confidence 345688899997 666666666311 13688899998889999887753332221111 111 12 5599877511
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.-...+.+..++|||||.+++-
T Consensus 105 --------g~~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 105 --------GGSETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp --------SCTTHHHHHHHHEEEEEEEEEC
T ss_pred --------CCHHHHHHHHHHHhcCCEEEEE
Confidence 1123677878999999999993
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.13 E-value=0.54 Score=39.27 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=56.1
Q ss_pred CCCCEEEEECCC--CChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC------CCCCCCee
Q 010592 101 GTVRTALDTGCG--VASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM------PYASRAFD 168 (506)
Q Consensus 101 ~~~~~VLDiGCG--~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l------p~~~~sfD 168 (506)
.++.+||=+||+ .|..+..++.. .+++++.+ +...+++++.|....+. .+..+. -...+.||
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~-----~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR-----EEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS-----HHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccc-----hhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhcccch
Confidence 345589999973 44555555543 35556654 35566777777654332 121111 01245699
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|+.... ....++.+.+.|+|||.+++.+
T Consensus 100 ~vid~~g-------~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 100 AVIDLNN-------SEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp EEEESCC-------CHHHHTTGGGGEEEEEEEEECC
T ss_pred hhhcccc-------cchHHHhhhhhcccCCEEEEec
Confidence 9987432 2566788899999999999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.00 E-value=0.57 Score=38.96 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=53.3
Q ss_pred CCCEEEEECCC-CChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc---C-CCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---M-PYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~-~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~---l-p~~~~sfDlV~~~ 173 (506)
++.+||=+|+| .|..+..+++. + ++++|.+ +...+.+++.|....+...+... + ....+.+|.|.+.
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~-----~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID-----DAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecch-----hhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc
Confidence 45588889987 34556666554 4 5556553 45567777777654432111110 0 0112334455442
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ....+....+.|+|||.+++.+.
T Consensus 102 ~--------~~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 102 V--------SNSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp S--------CHHHHHHHHTTEEEEEEEEECCC
T ss_pred c--------cchHHHHHHHHhcCCcEEEEEEe
Confidence 2 14568889999999999998763
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.64 E-value=1.4 Score=36.52 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=67.5
Q ss_pred eEEeecCcc-cH-HHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEccccccccCc
Q 010592 355 NIMDMNAGF-GG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 355 ~vLD~gcG~-G~-~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~~~~~~ 431 (506)
+|+=+|||. |+ +|..|.+.+ +..+|++.|.+++.++.+.+.|.+.... ....... ...|+|.. . .+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g-~~~~I~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~dlIil----a--~p~ 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDLGIIDEGT---TSIAKVEDFSPDFVML----S--SPV 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHTTSCSEEE---SCGGGGGGTCCSEEEE----C--SCH
T ss_pred EEEEEccCHHHHHHHHHHHhcC-CCeEEEEEECChHHHHHHHHhhcchhhh---hhhhhhhccccccccc----c--CCc
Confidence 466789986 44 566777765 3457999999999999999998754331 1222122 56788876 1 112
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEeC--hhhHHHHHHHHhc
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVGG 469 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~--~~~~~~~~~~~~~ 469 (506)
.....++.++...|+|+-.++-.-. ....+.+++.+..
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~ 112 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK 112 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 2356789999999998865544322 3355666665543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=83.47 E-value=1.8 Score=36.01 Aligned_cols=104 Identities=7% Similarity=-0.045 Sum_probs=61.1
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC-------CC
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-------YP 413 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~-------~p 413 (506)
|..+..........+|+=+|||.++..+.+..+..-..+|+.+|.+++-++.+.+-|....+..-.++... -+
T Consensus 17 y~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~ 96 (175)
T d1cdoa2 17 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTN 96 (175)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHT
T ss_pred HHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhcc
Confidence 44444433444556799999999776555433222235799999999999999998854433221121110 12
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCC-cEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPE-GAIII 453 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPg-G~~ii 453 (506)
+-+|+|.- -..-..++......+++| |.+++
T Consensus 97 ~G~d~vid---------~~G~~~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 97 GGVDFSLE---------CVGNVGVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp SCBSEEEE---------CSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred CCcceeee---------ecCCHHHHHHHHHHhhCCCcceeE
Confidence 45787764 122345666767776666 44444
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=83.32 E-value=1.5 Score=36.15 Aligned_cols=100 Identities=13% Similarity=0.029 Sum_probs=63.7
Q ss_pred EEeecCc--ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcCC
Q 010592 356 IMDMNAG--FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 356 vLD~gcG--~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~ 433 (506)
|.=+|+| -+.+|..|.+.+ .+|++.|.+++.++.+.+.|++....+-.+.+ ...|+|+. . . +...
T Consensus 3 I~iIG~G~mG~~lA~~l~~~g---~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIil----a-v-p~~~ 69 (165)
T d2f1ka2 3 IGVVGLGLIGASLAGDLRRRG---HYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFL----C-T-PIQL 69 (165)
T ss_dssp EEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEE----C-S-CHHH
T ss_pred EEEEeecHHHHHHHHHHHHCC---CEEEEEECCchHHHHHHHhhccceeeeecccc----cccccccc----c-C-cHhh
Confidence 4446777 344777888887 47888999989999999998754332211211 56788875 1 1 1234
Q ss_pred HHHHHHHHhhhccCCcEEEEEeC--hhhHHHHHHHHh
Q 010592 434 IEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVG 468 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii~d~--~~~~~~~~~~~~ 468 (506)
++.++.|+...|+|+-.++-.-. ......+.++..
T Consensus 70 ~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~ 106 (165)
T d2f1ka2 70 ILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS 106 (165)
T ss_dssp HHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST
T ss_pred hhhhhhhhhhhcccccceeeccccchHHHHHHHHhhc
Confidence 66899999888888886654332 224444555443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.28 E-value=1.8 Score=35.86 Aligned_cols=103 Identities=8% Similarity=-0.099 Sum_probs=61.4
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHH-HHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc--C-----CCC
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAA-AIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA--F-----STY 412 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~-~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~--~-----~~~ 412 (506)
|..+..........+||=+|||..+..+ .+++. ....+|+.+|.++..++.+++-|....+...-+. + .+.
T Consensus 17 y~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~-~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~ 95 (176)
T d2fzwa2 17 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKV-AGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMT 95 (176)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHT
T ss_pred HHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHH-HhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHc
Confidence 4444432333445678888888554433 33331 1124688888898899999887754333221110 0 113
Q ss_pred CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++-+|+|.- --.-..++.....++++||.+++
T Consensus 96 ~~g~D~vid---------~~G~~~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 96 DGGVDYSFE---------CIGNVKVMRAALEACHKGWGVSV 127 (176)
T ss_dssp TSCBSEEEE---------CSCCHHHHHHHHHTBCTTTCEEE
T ss_pred CCCCcEeee---------cCCCHHHHHHHHHhhcCCceeEE
Confidence 466888885 11235688889999999987765
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=82.85 E-value=6.8 Score=35.55 Aligned_cols=136 Identities=17% Similarity=0.158 Sum_probs=79.3
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC----CceeEEEEcc---ccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP----RTYDLIHAHG---LFS 426 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p----~s~Dlv~~~~---~~~ 426 (506)
-+|||+=||.|++...|...|.. -|.++|..+..++.-...- .... +.++...+ ..+|+|+++. -||
T Consensus 12 lrv~~lFsG~Gg~~~gl~~aG~~--~v~a~e~d~~a~~~~~~N~-~~~~---~~Di~~~~~~~~~~~Dll~ggpPCq~fS 85 (327)
T d2c7pa1 12 LRFIDLFAGLGGFRLALESCGAE--CVYSNEWDKYAQEVYEMNF-GEKP---EGDITQVNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHTTCE--EEEEECCCHHHHHHHHHHH-SCCC---BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred CeEEEECccccHHHHHHHHCCCe--EEEEEeCCHHHHHHHHHHC-CCCC---cCchhcCchhhcceeeeeecccccchhh
Confidence 36999999999999999988853 3567888866555443321 1111 13333322 4689998842 344
Q ss_pred ccc-------CcCCHHHHHHHHhhhccCCcEEEEE--------eChhhHHHHHHHHhcCCceEE--EeecC--CCCCCCe
Q 010592 427 LYK-------DKCNIEDILLEMDRILRPEGAIIIR--------DEVDEIIKVKKIVGGMRWDTK--MVDHE--DGPLVPE 487 (506)
Q Consensus 427 ~~~-------~~~~~~~~l~e~~RvLrPgG~~ii~--------d~~~~~~~~~~~~~~~~w~~~--~~~~~--~~~~~~~ 487 (506)
... ++..+-..+.++-+.+||. ++++- +.....+.+...+..+++.+. +.+.. .-|+.++
T Consensus 86 ~ag~~~g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~ 164 (327)
T d2c7pa1 86 ISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRE 164 (327)
T ss_dssp TTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCE
T ss_pred hhhhhcCCcccchhHHHHHHHHHhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhh
Confidence 322 3334445566666778995 44442 222355677777777776644 33333 2344454
Q ss_pred -EEEEEEecc
Q 010592 488 -KILVAVKQY 496 (506)
Q Consensus 488 -~~l~~~k~~ 496 (506)
.++++.|+-
T Consensus 165 R~fivg~r~~ 174 (327)
T d2c7pa1 165 RIYMICFRND 174 (327)
T ss_dssp EEEEEEEBGG
T ss_pred hheeeeeccC
Confidence 456676643
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.10 E-value=1.1 Score=41.88 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCCCC----CCCCCEEEEECCCCChhHHHHhhC----CcEEEecCcc
Q 010592 86 DKYIDQLASVIPIK----NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPR 133 (506)
Q Consensus 86 ~~~~~~l~~~l~~~----~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~ 133 (506)
...++.|.+.+.+. .....+|||||.|.|.++..|.+. .++++++++.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~ 78 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS 78 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHH
Confidence 33445555554322 223568999999999999999764 4899999764
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=81.53 E-value=0.86 Score=41.05 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=50.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCccc---HHHHHhcCc------------cceec-cccccCCC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNT---LGVIYERGL------------IGIYH-DWCEAFST 411 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~---l~~~~~rg~------------~~~~~-~~~~~~~~ 411 (506)
++.+...+|||+-||.|..+..|+..| .+|+.++-++-+ ++-+.+|.. +..++ +-.+-+..
T Consensus 84 l~~~~~~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~ 160 (250)
T d2oyra1 84 IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred CCCCCCCEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc
Confidence 444444589999999999999999876 478898888543 332222210 11111 11122444
Q ss_pred CCCceeEEEEcccccccc
Q 010592 412 YPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 412 ~p~s~Dlv~~~~~~~~~~ 429 (506)
....||+|+.+-.|..-.
T Consensus 161 ~~~~~DvIYlDPMFp~~~ 178 (250)
T d2oyra1 161 ITPRPQVVYLDPMFPHKQ 178 (250)
T ss_dssp CSSCCSEEEECCCCCCCC
T ss_pred cCCCCCEEEECCCCcccc
Confidence 557899999999998443
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.21 E-value=5 Score=36.60 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=70.6
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC------CceeEEEEc---ccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP------RTYDLIHAH---GLF 425 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p------~s~Dlv~~~---~~~ 425 (506)
+|+|+=||.|+|...|...|+-.--|.++|..+...+.-... ... ....++++.... ..+|++++. ..|
T Consensus 4 kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n-~~~-~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 4 RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN-FPH-TQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-CTT-SCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred EEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH-CCC-CCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence 599999999999988877664322356778876655543322 111 111233433322 368999873 234
Q ss_pred ccccCcCCH----HHHHHHHhhhc-----cCCcEEEEEeChh------hHHHHHHHHhcCCceEEE--eecCC--CCCCC
Q 010592 426 SLYKDKCNI----EDILLEMDRIL-----RPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKM--VDHED--GPLVP 486 (506)
Q Consensus 426 ~~~~~~~~~----~~~l~e~~RvL-----rPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~--~~~~~--~~~~~ 486 (506)
|....+-.+ ..++.|+.|++ ||- ++++ +.+. ..+.|.+.++.+++.+.. ++..+ -|+.+
T Consensus 82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~-ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vlna~dyGvPQ~R 159 (343)
T d1g55a_ 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILL-ENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSR 159 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCS-EEEE-EEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCC
T ss_pred cccccccccccccccccchhhhhHhhhcCCCc-eeee-eccCCcccchhhHHHHhhhhccccccceeeeeccccCCcccc
Confidence 433322111 12556666665 575 4444 3322 356677778888887663 33321 24444
Q ss_pred eE-EEEEEe
Q 010592 487 EK-ILVAVK 494 (506)
Q Consensus 487 ~~-~l~~~k 494 (506)
+. ++++.+
T Consensus 160 ~Rvfivg~r 168 (343)
T d1g55a_ 160 LRYFLIAKL 168 (343)
T ss_dssp CEEEEEEEE
T ss_pred eeEEEEEEe
Confidence 44 455554
|