Citrus Sinensis ID: 010595

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500------
Protein Sequence
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccEEEccEEEEccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEEcccccccccccccccccccEEEcccEEEcccHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHc
Coil and Loop (DISEMBL)
maaengrvhpnclnasnpyheCGMACLEKIaqghghketpkkkldyhngvKEGVISKMKneerkvnpncikasnpyhecgercfkrngeanalgfkkqsegvisvkknegrkvdptcikasnpyhecgehcfkrngeanargvnkesgswsfgrknkasdsqpgtpltpravdkvavggqkangqharsenypkkkvesengksfsrpehfsreihpedhslnkekvrstqsvppsenikmndmsksppkesvtslpgaspskngkdnkvqapieihhstedggedipspadgsrnfsfsgidlasgdsddeeaqsvisdsvsvgkYHVRASISSILQSIISRYGDIaancnlesnsMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Flexible Loop (DISEMBL)
maaengrvhpnclnaSNPYHECGMACLEKIAQGHGHketpkkkldyhngVKEGViskmkneerkvnpncikasnpyhECGERCFKRNGEanalgfkkqsegvisvkknegrkvdptciKASNPYHECGEHCFKRNGEANARGVNKesgswsfgrknkasdsqpgtpltpravDKVAVGGqkangqharsenypkkkvesengksfsrpehfsreihpedhslnkekvrstqsvppsenikmndmsksppKESVTSlpgaspskngkdnKVQAPIEIHHstedggedipspaDGSRNFSFSGIDLASGDSDDEEAQSVIsdsvsvgkyHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQatqskvtkfsqksladeil
Low Complexity Region (SEG)
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRAsissilqsiisRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Disordered region (IsUnstruct)
************LNASNPYHECGMACLEKIA*************************************CIKASNPYHECGERCFKRN*****L**********************TCIKASNPYHECGEHCF*********************************************************************************************************************************************************************************************VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLL*********************************************************************
Disordered Region (DISOPRED)
****************NPYHECGMA******************************************************GER***************************************************************************************************************************************************************************************************************************************************KYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLM*MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISE************************************************************************ATQSKVTKFSQKSLADEIL
Disordered Region (DISEMBL)
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARG************************LTPRAVDKVAVGG*****************************EHFSREIHPEDHS*********************************************DNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLAS**********VISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK**************
Disordered Region (DISPRO)
*******VHPNCLNASNPYHECGMACLEKIAQ*******************************KVNPNCIKASNPYHECGERCFKRNGEAN********************KVDPTCIKASNPYHECGEHCFKRNGEAN***********************************************************************************************************************************Q***EIH***********SPADGSRNFSFSGIDLAS*******AQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLAD**L
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSEGVISVKKNEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVTKFSQKSLADEIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	506
224105147	541	predicted protein [Populus trichocarpa]	0.978	0.914	0.493	1e-116
449454227	402	PREDICTED: uncharacterized protein LOC10	0.745	0.937	0.460	3e-81
255560551	400	conserved hypothetical protein [Ricinus	0.766	0.97	0.492	1e-80
356536380	437	PREDICTED: uncharacterized protein LOC10	0.772	0.894	0.384	9e-66
356574151	411	PREDICTED: uncharacterized protein LOC10	0.780	0.961	0.380	1e-63
224078359	224	predicted protein [Populus trichocarpa]	0.428	0.968	0.600	2e-63
449458628	442	PREDICTED: uncharacterized protein LOC10	0.833	0.954	0.353	1e-54
145334227	401	phospholipase-like (PEARLI 4) family pro	0.699	0.882	0.356	3e-52
15236270	386	phospholipase-like (PEARLI 4) family pro	0.699	0.917	0.356	3e-52
186516425	398	phospholipase-like (PEARLI 4) family pro	0.699	0.889	0.356	3e-52

>gi|224105147|ref|XP_002313701.1| predicted protein [Populus trichocarpa] gi|222850109|gb|EEE87656.1| predicted protein [Populus trichocarpa]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 271/549 (49%), Positives = 333/549 (60%), Gaps = 54/549 (9%)

Query: 3   AENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLDYHNGVKEGVISKMKNEE 62
           AENGRVHP+C+NA+NPYHECG+ACLEKI+QG G KE  KKK DYHNGV    +SK  + E
Sbjct: 2   AENGRVHPDCVNAANPYHECGVACLEKISQGQGRKE--KKKSDYHNGVNGSWLSKNMDGE 59

Query: 63  RKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSEGVISVKK-------------NE 109
           R+  P C KASNPYH+C E C  R  E    G KK++ G     K             N 
Sbjct: 60  RRAQPTCPKASNPYHKCEEFCSNRTAEPKPGGVKKETGGAKPCPKASNPYHKCEEFCSNR 119

Query: 110 GRKVDP-----------TCIKASNPYHECGEHCFKRNGEANARGVNKESGSW-----SFG 153
               +P            C +ASNP H+C E C  R  EAN +GV KESGS+     SFG
Sbjct: 120 TADANPRGVKKQSERAQPCPRASNPSHKCDEFCSNRTSEANPQGVEKESGSFLDTALSFG 179

Query: 154 RKNKASDSQPGTPLTPRAVD-----KVAVGGQKANGQHARSENYP-----KKKVESENGK 203
           RK K S+SQ  +P   RAV+     K AV    A     R+   P     KK  E EN +
Sbjct: 180 RKKKESESQQNSP---RAVNNAPAVKGAVNNAPAVKAVRRAPPSPLILPTKKDEEPENSR 236

Query: 204 SFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVT--SLPG-AS 260
           SFS  +  S E + EDH+L+K  V+S   +  S  I   D  KSP K S+    +P  A 
Sbjct: 237 SFSSSQPHSDESYSEDHALDKVPVQSPGPMHVSGKI-TPDPPKSPSKISLACYKIPTPAE 295

Query: 261 PSKNGK--DNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVI 318
           P +NGK   +   AP   + S    G     P     NFSFSGI  AS  SD EE QSV+
Sbjct: 296 PQQNGKLHGSPKAAP---YPSANHVGRVTNGPITEYLNFSFSGISRASEGSDGEEVQSVV 352

Query: 319 SDSVSV-GKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 377
           SDS    GKYHVRA+++SILQ I  +YGDIA    LES SMRAYYLECLC VVQELQ T 
Sbjct: 353 SDSCVSVGKYHVRANVASILQLIFEKYGDIATGSRLESASMRAYYLECLCFVVQELQCTP 412

Query: 378 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLL 437
             Q+TK+KV+EM+AVLKDVESAQIDV WLR+ILN+++E +E S QHQ  + +K+NC +L+
Sbjct: 413 FKQLTKSKVREMLAVLKDVESAQIDVSWLRDILNDLAEGMELSNQHQAAEESKSNCDDLI 472

Query: 438 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497
           ES KKELES M +LALKEK VA  K  + +T+  LS+LELES++L + I + QS+V KF 
Sbjct: 473 ESKKKELESMMEDLALKEKAVADAKAQITETRTHLSNLELESSKLGETISSIQSRVEKFH 532

Query: 498 QKSLADEIL 506
           +K LADEIL
Sbjct: 533 EKPLADEIL 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454227|ref|XP_004144857.1| PREDICTED: uncharacterized protein LOC101210853 [Cucumis sativus] gi|449519968|ref|XP_004167006.1| PREDICTED: uncharacterized protein LOC101226690 [Cucumis sativus]

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 194/421 (46%), Positives = 264/421 (62%), Gaps = 44/421 (10%)

Query: 109 EGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSW------SFGRKNKASDSQ 162
           E RKV P CI ASNP+HEC ++C K+  E+ A    K  GS+      SFGRK K S  +
Sbjct: 3   ERRKVRPDCIYASNPFHECTDYCIKKTAESKAGKDKKSKGSFRLDISKSFGRK-KGSRPK 61

Query: 163 PGTPLTPRAVDKVAVGGQKANGQHAR-----SENYPKKKVESENGKSFSRPEHF-SREIH 216
           P     P+ VD    GG+ ++   +      S   PKKKVES NG   S  + F S EIH
Sbjct: 62  P-----PKDVD----GGRYSSTVPSEPLSLNSRISPKKKVESINGGHISPAKRFYSEEIH 112

Query: 217 PEDHSLNKEKVRSTQSVPPSENIKMNDMS-KSPPKESVTSLPGASPSKNGKDNKVQAPIE 275
           PED SLN E+   T  +P  +++ M + S  SP K S+  L   S +KNG  N       
Sbjct: 113 PEDPSLNVEQ-HDTPRIPSYDSLMMPEYSVDSPKKGSIRMLEQMSNNKNGGGN------- 164

Query: 276 IHHSTEDGGEDIPSPADGSRNF---------SFSGIDLASGDSDDEEAQSVISDS-VSVG 325
            H +  D     P+  +G   F         S SG +    DSD+EE +SV S+  V VG
Sbjct: 165 -HETFFDNR--TPNGNNGKERFRKQSSESSFSLSGFEQTLVDSDEEEIESVNSEQCVPVG 221

Query: 326 KYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAK 385
           KYHV++S SSIL SI  +YGDIAA C LES SMR+YYLEC+C V+QELQST   Q+TK+K
Sbjct: 222 KYHVKSSFSSILTSIFEKYGDIAATCKLESVSMRSYYLECVCYVIQELQSTEFHQLTKSK 281

Query: 386 VKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE 445
           V+E++A+ KDVES++I++ WL++ +NEI++A+E  +QH+ IDAAK +C   LES KKEL+
Sbjct: 282 VRELLAIFKDVESSEINITWLKSRINEIAQAVELRSQHRAIDAAKTDCEQNLESIKKELD 341

Query: 446 SQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 505
           SQM +LALKEKE++  K  VA+T+ARLS+LEL+S++L+++I +  SKV  F  KS +D++
Sbjct: 342 SQMADLALKEKELSDAKTKVAETEARLSELELKSSQLKEMISSIDSKVENFRCKSFSDDL 401

Query: 506 L 506
           L
Sbjct: 402 L 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560551|ref|XP_002521290.1| conserved hypothetical protein [Ricinus communis] gi|223539558|gb|EEF41146.1| conserved hypothetical protein [Ricinus communis]

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 198/402 (49%), Positives = 253/402 (62%), Gaps = 14/402 (3%)

Query: 112 KVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSW------SFGRKNKASDSQPGT 165
           +V P C+ ASNPYHECG  C ++  +       K+SGS+      SFGRK K S+SQP +
Sbjct: 6   RVHPDCVNASNPYHECGVACLEKIAQGQGWKEKKKSGSFILDTSLSFGRKKKGSESQPRS 65

Query: 166 PLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKE 225
           P     V   A     A+    RS    KKKVES+NG S S     S E + +DHS +K 
Sbjct: 66  PKVANNV-SAAKAVYPADLSSPRSPFPTKKKVESDNGHSSSSSRQHSEESYSQDHSFDKG 124

Query: 226 KVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGE 285
           +V + + VP S N+K  D  K+    S T    A P++     K   P  I +     G 
Sbjct: 125 QVLAPELVPVSGNLK-PDGPKNLSLGSFTCFAIAPPTEQDDKEKSPLPGAIKNVEITNGR 183

Query: 286 DIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRY 344
                +  S NF+FSGI  A+  SDDEE  SVISDS VSVGKYHVRA+ +SILQSII +Y
Sbjct: 184 -----STESLNFTFSGISRATEGSDDEEILSVISDSCVSVGKYHVRANSASILQSIIDKY 238

Query: 345 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 404
           GDIAANC LES S+R YYLECLCSVVQELQSTSL Q+TK+KV+E++AVLKDVESAQIDV 
Sbjct: 239 GDIAANCRLESTSLRTYYLECLCSVVQELQSTSLNQLTKSKVRELLAVLKDVESAQIDVS 298

Query: 405 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES 464
           WLR+ILN ++EA+E + + Q  + AK NC +++EST+KELES + EL  KE+ VA  K  
Sbjct: 299 WLRSILNGLTEAVELNNKQQAAEEAKTNCDHVIESTRKELESMVEELGQKEQAVANTKAR 358

Query: 465 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506
           + +  A LS+LELES+ L   I + +SK+  F  K L D+IL
Sbjct: 359 IEEISAHLSELELESSELSDTILSLRSKIDNFHSKPLRDQIL 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536380|ref|XP_003536716.1| PREDICTED: uncharacterized protein LOC100788258 [Glycine max]

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 176/458 (38%), Positives = 245/458 (53%), Gaps = 67/458 (14%)

Query: 65  VNPNCIKASNPYHECGERCFKRNGEAN---------ALGFKKQ----SEGVISVKKNEGR 111
           V P+C+ A NPYHEC E C  R  EA             FK      ++G +     E +
Sbjct: 31  VMPDCVYAPNPYHECTEACVHRIKEAKPGKPSKTKKGTAFKDYRRSVTDGELGKTMKEEK 90

Query: 112 KVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWS--FGRKNKASDSQPGTPLTP 169
           +    C KASNPYH C E+C K +           SG+ S  F R+ K   S+P  P+  
Sbjct: 91  RRPSGCPKASNPYHVCDEYCQKAD-----------SGTMSLNFDRRKKVG-SKPELPVL- 137

Query: 170 RAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRS 229
            +V    +G    +   +   NY +K                            KE+ +S
Sbjct: 138 DSVPPSKIGAIYLSDASSPLSNYSEK---------------------------TKEESKS 170

Query: 230 TQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPS 289
            + +P S  I + D+  +  K             NG  N     + I  S +D G  +  
Sbjct: 171 NELIPVSGEIHVLDVMPTNHK--------VQAKHNGDKNASPKVVPIT-SVDDTG-CLTK 220

Query: 290 PADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIA 348
           P  GS NF FSG+   + DSD EE +SV+S+S V VGKYHV+ S + IL+SI  +YGDI 
Sbjct: 221 PDGGSMNFCFSGLH-DNEDSDGEETESVVSESRVPVGKYHVKESFAPILRSIFEKYGDIG 279

Query: 349 ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408
           A+C+LES  MR+YY+EC+C VVQELQST +MQ+TK+K+KE+MA+LKDVESAQ+ V WLR+
Sbjct: 280 ASCHLESVVMRSYYVECVCFVVQELQSTPIMQLTKSKIKELMAILKDVESAQLRVAWLRS 339

Query: 409 ILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT 468
           I++EI+E IE   +H   + AKAN    +ES  KELES +  LA KE+EV  +K  +   
Sbjct: 340 IVDEITENIELIDEHCVAETAKANSDREVESLNKELESNLEILAQKEQEVTDIKTRIEAI 399

Query: 469 KARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506
           + RLS+LEL+S  L++ I + +SKV     KSL DE++
Sbjct: 400 RERLSELELKSCDLDKNILSIKSKVDNLDSKSLLDELV 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574151|ref|XP_003555215.1| PREDICTED: uncharacterized protein LOC100811116 [Glycine max]

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 175/460 (38%), Positives = 245/460 (53%), Gaps = 65/460 (14%)

Query: 61  EERKVNPNCIKASNPYHECGERCFKRNGEA-------NALGFKKQ----SEGVISVKKNE 109
           E  +V  NC+ A NPYHEC E C +R  EA           FK      ++G +  K  E
Sbjct: 3   EHGRVMANCVYAPNPYHECTEACVQRIKEAKPGKPSKTKKVFKDYRRSVTDGELGKKMKE 62

Query: 110 GRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWS--FGRKNKASDSQPGTPL 167
            ++    C KASNPYH C E+C K +           SG+ S  F R+ K   S+P  P+
Sbjct: 63  EKRRPSGCPKASNPYHVCDEYCQKAD-----------SGTMSLNFDRRKKVG-SKPELPV 110

Query: 168 TPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKV 227
              +V    +G    +   +   NY +K                            KE+ 
Sbjct: 111 L-DSVPPSKIGAIYLSDASSPLSNYSEK---------------------------TKEES 142

Query: 228 RSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDI 287
           +S + +P S  I + D+   P    V S        NG  N     + I  S +D G  +
Sbjct: 143 KSNELIPVSGEIHVLDVM--PTNHKVQS------KHNGDKNASPKVVPIT-SVDDTG-CL 192

Query: 288 PSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGD 346
             P  GS NF  SG+   + DSD  E +SV+S+S V VGKYHV+ S + IL+SI  +YGD
Sbjct: 193 TKPDGGSMNFCLSGLH-DNEDSDGGETESVVSESRVPVGKYHVKESFAPILRSIFEKYGD 251

Query: 347 IAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWL 406
           I A+C+LES  MR+YY+EC+C VVQELQST +MQ+ K+K+ E+MA+LKDVESAQ+ V WL
Sbjct: 252 IGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLAKSKIMELMAILKDVESAQLRVAWL 311

Query: 407 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVA 466
           RNI++EI+E IE   +H   + AKAN    +E+  KELES +  LA KE+EV  +K  + 
Sbjct: 312 RNIVDEIAENIELIDEHCMAEMAKANSDREMETLNKELESNLESLAQKEQEVTDIKTRIE 371

Query: 467 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506
           + +  LS+LEL+S+ L + I + +SKV     KSL DE++
Sbjct: 372 EIREHLSELELKSSDLAKNILSIKSKVDNLDSKSLLDELV 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078359|ref|XP_002305527.1| predicted protein [Populus trichocarpa] gi|222848491|gb|EEE86038.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/218 (60%), Positives = 164/218 (75%), Gaps = 1/218 (0%)

Query: 290 PADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIA 348
           P   +  + + GI  AS +SD+EE QSVISDS VSVGKYHVR +I+SILQ I+ +YGDIA
Sbjct: 7   PWTNACVWEYHGISRASEESDEEEVQSVISDSCVSVGKYHVRENIASILQLILDKYGDIA 66

Query: 349 ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408
           A   LES SMRAYYLECLCSVV ELQ TS  Q+T +KV+EM+AVLKDVESAQIDV WLR+
Sbjct: 67  AGSRLESASMRAYYLECLCSVVHELQCTSFKQLTNSKVREMLAVLKDVESAQIDVSWLRD 126

Query: 409 ILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT 468
           ILN+++E +E S+QHQ  + AK+ C + +ES KKELES M +LA KEK VA  K  +++T
Sbjct: 127 ILNDLAEGMELSSQHQAAEEAKSKCDHAIESIKKELESMMEDLAQKEKAVADAKAQISET 186

Query: 469 KARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506
           + RL+ LEL+S+RL + I +  S V KF  K LADEIL
Sbjct: 187 RDRLNKLELDSSRLSETISSIWSTVEKFHDKPLADEIL 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458628|ref|XP_004147049.1| PREDICTED: uncharacterized protein LOC101220927 [Cucumis sativus] gi|449489625|ref|XP_004158368.1| PREDICTED: uncharacterized LOC101220927 [Cucumis sativus]

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 240/450 (53%), Gaps = 28/450 (6%)

Query: 68  NCIKASNPYHECGERCFKRNGEANALGFKKQSEGVISVKKNEGRK--VDPTCIKASNPYH 125
           +C  ASNPYH C E CF++ GE+     +K S G  + K +  RK  V   C + SNPYH
Sbjct: 10  DCSHASNPYHVCSEYCFEKKGESKKQIVRKDS-GDSAWKFSSERKKTVRSDCTRGSNPYH 68

Query: 126 ECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQ 185
            C E C     ++      + S   S G +  +       P +PR +         +  Q
Sbjct: 69  NCDEFCSNMTTQSGRPKAERGSAVGSGGARRDS------LPKSPRKLSDPLASAVSSKPQ 122

Query: 186 HARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSEN---IKMN 242
                   K  V  E+ K+   PE  +  +  ED    +E+ + ++ +  S N   ++ N
Sbjct: 123 ------VTKTCVPPESSKTSVPPEERTHFV--EDSLTIEEQNKFSKLILVSANALKVEAN 174

Query: 243 DMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIH----HSTEDGGEDIPSPADGSRNFS 298
           ++ K    E+ +     S     K +++   ++      H  E+G     SP   S  F 
Sbjct: 175 NLQKLHKTETYSITSVKSKEHITKSSEISELVQDEDPSVHEEEEGNHKTTSPNITS--FP 232

Query: 299 FSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNS 357
           F  +      SD+ + +SV S+  V VGKYHV+ S++ ILQSI +++GDIAA+C LES S
Sbjct: 233 FPTMAPNQKGSDENDVKSVSSEPYVPVGKYHVKLSLAPILQSIFNKHGDIAASCKLESIS 292

Query: 358 MRAYYLECLCSVVQELQSTSLMQ-MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA 416
           +R+YYLEC+C ++ ELQ T   Q ++K+KVKE++A+L DV S+ ++V WL +ILN+I+EA
Sbjct: 293 IRSYYLECVCYIIHELQHTKFSQKVSKSKVKELLAILNDVVSSGMNVGWLHSILNDIAEA 352

Query: 417 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 476
           +E S Q  T++ AKANC + LE  K ELESQ  +L  KEKE+   K  VA T+ARLS+LE
Sbjct: 353 VESSGQQFTLEVAKANCDHELELIKNELESQTQDLTRKEKEMNDAKAKVAGTRARLSELE 412

Query: 477 LESNRLEQIIQATQSKVTKFSQKSLADEIL 506
            +  +L + I + Q KV       L D++L
Sbjct: 413 SKYLQLNKEISSLQFKVNGLKCNDLTDDLL 442

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334227|ref|NP_001078494.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661068|gb|AEE86468.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 224/424 (52%), Gaps = 70/424 (16%)

Query: 111 RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKE------SGSWSFGRKNKASDSQPG 164
           RK  P C+ A NP+HEC   C ++  + + +   K+      S S SFGRK K S+SQP 
Sbjct: 20  RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 79

Query: 165 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 220
           TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct: 80  TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 135

Query: 221 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 280
             +K + + +Q++P S N  + D SK      V+  PG     NGK              
Sbjct: 136 FNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK-------------I 175

Query: 281 EDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS-V 322
            +GGE        +R FSF  +  + G                    + + +SV+SD+ V
Sbjct: 176 GEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTFV 227

Query: 323 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 382
           SVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++
Sbjct: 228 SVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLS 287

Query: 383 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 442
           K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ ++
Sbjct: 288 KVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKRE 341

Query: 443 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 502
           ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  
Sbjct: 342 ELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFI 397

Query: 503 DEIL 506
           DE+L
Sbjct: 398 DELL 401

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236270|ref|NP_195237.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|30690215|ref|NP_849495.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|14326527|gb|AAK60308.1|AF385717_1 AT4g35110/M4E13_160 [Arabidopsis thaliana] gi|2924521|emb|CAA17775.1| putative protein [Arabidopsis thaliana] gi|7270462|emb|CAB80228.1| putative protein [Arabidopsis thaliana] gi|22137306|gb|AAM91498.1| AT4g35110/M4E13_160 [Arabidopsis thaliana] gi|23397133|gb|AAN31850.1| unknown protein [Arabidopsis thaliana] gi|332661066|gb|AEE86466.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661067|gb|AEE86467.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 224/424 (52%), Gaps = 70/424 (16%)

Query: 111 RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKE------SGSWSFGRKNKASDSQPG 164
           RK  P C+ A NP+HEC   C ++  + + +   K+      S S SFGRK K S+SQP 
Sbjct: 5   RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 64

Query: 165 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 220
           TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct: 65  TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 120

Query: 221 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 280
             +K + + +Q++P S N  + D SK      V+  PG     NGK              
Sbjct: 121 FNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK-------------I 160

Query: 281 EDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS-V 322
            +GGE        +R FSF  +  + G                    + + +SV+SD+ V
Sbjct: 161 GEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTFV 212

Query: 323 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 382
           SVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++
Sbjct: 213 SVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLS 272

Query: 383 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 442
           K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ ++
Sbjct: 273 KVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKRE 326

Query: 443 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 502
           ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  
Sbjct: 327 ELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFI 382

Query: 503 DEIL 506
           DE+L
Sbjct: 383 DELL 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186516425|ref|NP_001119119.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661069|gb|AEE86469.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 224/424 (52%), Gaps = 70/424 (16%)

Query: 111 RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKE------SGSWSFGRKNKASDSQPG 164
           RK  P C+ A NP+HEC   C ++  + + +   K+      S S SFGRK K S+SQP 
Sbjct: 17  RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 76

Query: 165 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 220
           TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct: 77  TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 132

Query: 221 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 280
             +K + + +Q++P S N  + D SK      V+  PG     NGK              
Sbjct: 133 FNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK-------------I 172

Query: 281 EDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS-V 322
            +GGE        +R FSF  +  + G                    + + +SV+SD+ V
Sbjct: 173 GEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTFV 224

Query: 323 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 382
           SVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++
Sbjct: 225 SVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLS 284

Query: 383 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 442
           K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ ++
Sbjct: 285 KVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKRE 338

Query: 443 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 502
           ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  
Sbjct: 339 ELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFI 394

Query: 503 DEIL 506
           DE+L
Sbjct: 395 DELL 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	506
TAIR|locus:2131611	401	AT4G35110 "AT4G35110" [Arabido	0.731	0.922	0.352	8e-53
TAIR|locus:2039435	382	AT2G16900 "AT2G16900" [Arabido	0.723	0.958	0.360	1.6e-47
TAIR|locus:2047122	748	pEARLI4 "AT2G20960" [Arabidops	0.490	0.331	0.337	5e-35
TAIR|locus:2046992	530	AT2G20950 [Arabidopsis thalian	0.422	0.403	0.359	2.9e-33
TAIR|locus:2121159	612	AT4G38550 [Arabidopsis thalian	0.802	0.663	0.272	1.8e-32
TAIR|locus:2121169	523	AT4G38560 "AT4G38560" [Arabido	0.383	0.370	0.384	3.5e-32
TAIR|locus:2147937	241	AT5G11140 "AT5G11140" [Arabido	0.367	0.771	0.382	2.8e-28
TAIR|locus:2039395	298	AT2G16860 "AT2G16860" [Arabido	0.126	0.214	0.446	8.1e-07
TAIR|locus:2085385	343	AT3G58270 "AT3G58270" [Arabido	0.383	0.565	0.258	5.5e-06
TAIR|locus:2085460	453	AT3G58220 "AT3G58220" [Arabido	0.577	0.644	0.229	2.5e-05

TAIR|locus:2131611 AT4G35110 "AT4G35110" [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 144/408 (35%), Positives = 217/408 (53%)

Query:   111 RKVDPTCIKASNPYHECGEHCFKRNGEANAR-GVNKESG-----SWSFGRKNKASDSQPG 164
             RK  P C+ A NP+HEC   C ++  + + +    K+S      S SFGRK K S+SQP 
Sbjct:    20 RKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQPP 79

Query:   165 TPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPEDH 220
             TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D 
Sbjct:    80 TPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDDF 135

Query:   221 SLNKEKVRSTQSVPPSENIKMNDMSKS-PPKESVTSLPGASPSKNGKDNKVQAPIEIHHS 279
               +K + + +Q++P S N  + D SK   PK  +    G      G + ++ + + +  S
Sbjct:   136 FNHKPEKKPSQTIPLSSN-NLVDQSKVVSPKPGIQEHNGKIGE--GGETRLFSFLSLPRS 192

Query:   280 TEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRAXXXXXXX 338
                   D  S  D   N    G++L        + +SV+SD+ VSVGKY VR+       
Sbjct:   193 PGKESNDDFSDDDDENNNEI-GVEL--------DLESVMSDTFVSVGKYRVRSGSSTILS 243

Query:   339 XXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 398
                 ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++K KVKEM+AVLKD+ES
Sbjct:   244 AVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLSKVKVKEMLAVLKDLES 303

Query:   399 AQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 458
               I+V WLR++L E      F+   + ++  K     L+++ ++ELE+Q  +L   EKEV
Sbjct:   304 VNIEVAWLRSVLEE------FAQSQEDVENEKERHDGLVKAKREELEAQETDLVRMEKEV 357

Query:   459 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506
               +K  + +T+A++ ++E E  R+E++      K+ KF  KS  DE+L
Sbjct:   358 VEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFIDELL 401

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2039435 AT2G16900 "AT2G16900" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 147/408 (36%), Positives = 210/408 (51%)

Query:   111 RKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGS------WSFGRKNKASDSQPG 164
             RK  P C  +SNP+HEC   C ++  +      +K+ GS       SFG+K   ++SQP 
Sbjct:     5 RKAHPDCRYSSNPFHECASDCLEKISQGRGNKNSKKQGSKILSLPGSFGKKK--TESQPP 62

Query:   165 TPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSR--PEHFSREIHPEDHSL 222
             +PL+ R     A    K   Q   S    KK    E  KS      +  S +++ ++ S 
Sbjct:    63 SPLSTRNYQNGAANTPKVR-QSRPSPVAMKKTPVPEANKSLHSLSSDGISIDLNGQNDSF 121

Query:   223 NKEKVRSTQSVPPSENIKMNDMSK--SP-PKESVTSLPGASPSKNGKDNKVQAPIEIHHS 279
             N ++ + +++VP S N  M D  K  SP P+    S    + S+    N V  P      
Sbjct:   122 NHKQEKPSRTVPLSPN-SMADRGKPLSPRPQGHEHSGKNDTASEISLFNVVSPP---RSC 177

Query:   280 TEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRAXXXXXXX 338
               D  +D     D   N    G++L        +  SV+SDS VSVGKY V +       
Sbjct:   178 ANDDDDD-----DDENNGYEEGVEL--------DLISVMSDSCVSVGKYRVNSSVSTILQ 224

Query:   339 XXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 398
                 ++GDIAANC LES SMR+ YLECLCS++QEL ST + Q+T+ KVKEM+AVLKD+ES
Sbjct:   225 SIIDKHGDIAANCKLESASMRSRYLECLCSLMQELGSTPVGQLTELKVKEMVAVLKDLES 284

Query:   399 AQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 458
               IDV W+R++L E      F+   +  D+ K     L+ S K+E+E Q  +LA  EKEV
Sbjct:   285 VNIDVGWMRSVLEE------FAQYQENTDSEKERQEGLVRSKKQEMEIQEADLARIEKEV 338

Query:   459 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506
             A  +  V + KA L++LE E  R+E++      KV K+  K+  DE+L
Sbjct:   339 AEARLRVEEMKAELAELETERLRMEEM----GFKVEKYKGKTFLDELL 382

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006979 "response to oxidative stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2047122 pEARLI4 "AT2G20960" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 88/261 (33%), Positives = 139/261 (53%)

Query:   251 ESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSD 310
             E   S+   + SK+G   +     E  H   +   ++P   D S++FS + I    G   
Sbjct:   496 EHTVSIYAETTSKSGSSEQ-----EEQHKANNEPPELP---DESQSFSLAEISRMKGIIT 547

Query:   311 DEEA----QSVISDS-VSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLEC 365
             + E     QS++S+S VSVG+Y VRA           ++GDIA+   L+S + R+YYL+ 
Sbjct:   548 NNEIRDVMQSILSESYVSVGQYKVRASVSTTLQHILQKHGDIASGSKLQSLATRSYYLDM 607

Query:   366 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT 425
             L SVV ELQ+T L  + +++V EM+A++KD+ES +I   WL+ +L EI EA++   +H+ 
Sbjct:   608 LASVVFELQTTPLKYLKESRVVEMVAIVKDIESVKIKAGWLKPVLEEIVEAVKHYDEHKM 667

Query:   426 IDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 485
                 K      +   K+E E Q+ EL  KEK++   +  + +  A+L DL+++  RL + 
Sbjct:   668 SVVEKEVWERDVLLAKQETEKQVKELGEKEKKIKEWRAKMTEMAAKLGDLDMKRARLHKS 727

Query:   486 IQATQSKVTKFSQKSLADEIL 506
                  SKV KF  K L   IL
Sbjct:   728 FTFLSSKVDKFQGKPLLQGIL 748

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2046992 AT2G20950 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 2.9e-33, Sum P(2) = 2.9e-33
 Identities = 78/217 (35%), Positives = 123/217 (56%)

Query:   288 PSPADGSRNFSFSGIDLASG--DSDDEEAQSVISDS-VSVGKYHVRAXXXXXXXXXXXRY 344
             P   D S++F+   I    G      EE Q  IS++ VSV  Y VR            ++
Sbjct:   311 PELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKH 370

Query:   345 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 404
             GDIAA+  L+S S R++YLE L + V EL+ST+L  +TK +V E+ AV+KD++S +IDV 
Sbjct:   371 GDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVS 430

Query:   405 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES 464
             WL+  + E++EA+E+  ++ T    +  C   + + KKE+E    EL  +EKE    +E 
Sbjct:   431 WLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRER 490

Query:   465 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 501
             V +   RL  LE++  R+++ ++  +SKV KF   S+
Sbjct:   491 VTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSV 527

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2121159 AT4G38550 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 119/437 (27%), Positives = 203/437 (46%)

Query:    74 NPYHECGERCFK--RNGEANALGFKKQSEGVISVKKNEGRKVDPTCIKASNPYHECGEHC 131
             +P+H  G R     R  +  +   K+Q E +    + +G  V P      +P+H      
Sbjct:   194 SPFHPAGSRSPPPYRTPDRRSNYDKEQFEDLY---EQDG-DVTPRNSSPPSPFHPAA--- 246

Query:   132 FKRNGEANARGVNKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARS-- 189
             +K + + +  G  +    +         +S P +PL P A              H RS  
Sbjct:   247 YKTSDQRSNHGKEQIEDFYEQDDDVTPRNSSPPSPLHPAASHSPPPPQPYRTPDHRRSHQ 306

Query:   190 ENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPP 249
             +N   + +   +G    +       +H   +S + +   ST   P           +SP 
Sbjct:   307 DNEDFEAMYELDGDLIHQKSAPPSPVHGPYYSSSDDDNHSTYLYPEI---------RSPL 357

Query:   250 KESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASG-- 307
             +  + S   ++P  +  + ++ A  E +   +D   + P   D S++F+   I    G  
Sbjct:   358 RSRIVS-ENSTPVHH--NYQIVAA-ETYE--QDKQFEPPELPDESQSFTMQEITKMRGLK 411

Query:   308 --DSDDEEAQSVISDS-VSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLE 364
               +S  EE+QS+IS++ VSV  Y VR            ++GDIAA+  L++ + R+YYLE
Sbjct:   412 NYESGKEESQSMISEAYVSVANYRVRQSVSETLQAIIDKHGDIAASSKLQAMATRSYYLE 471

Query:   365 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQ 424
              L +VV EL+ T L  +TK +V E+ AV+KD+ES +I+V WL+  + E++EA+E+  Q+ 
Sbjct:   472 SLAAVVMELKKTVLRDLTKTRVAEIAAVVKDMESVKINVSWLKTAVTELAEAVEYFGQYD 531

Query:   425 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 484
             T    K  C   L + K E+E    EL  +EKE+   +E V     RL  LE++ ++L +
Sbjct:   532 TAKVEKEVCERDLTAKKGEMEEMTAELVKREKEIKECREKVTVVAGRLGQLEMKGSKLNK 591

Query:   485 IIQATQSKVTKFSQKSL 501
              +   QSKV KF  +++
Sbjct:   592 NLDLFQSKVHKFQGEAV 608

GO:0005634 "nucleus" evidence=ISM

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2121169 AT4G38560 "AT4G38560" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 3.5e-32, Sum P(2) = 3.5e-32
 Identities = 75/195 (38%), Positives = 112/195 (57%)

Query:   312 EEAQSVISDS-VSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECLCSVV 370
             EE +S+IS+S VSVG Y VRA           ++GDIA+   L+S   ++Y LE L +VV
Sbjct:   328 EEMKSMISESYVSVGSYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVV 387

Query:   371 QELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAK 430
              ELQST L ++ +A+V EM++V+ D ES +I   WLR ILNEI EA      H+T    K
Sbjct:   388 LELQSTPLKKLKQARVLEMLSVVIDAESVKIRAGWLREILNEILEAAHHYDGHETTVVEK 447

Query:   431 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 490
                   +   ++E++    E+ LKEKE    ++ V +   RL +L+++  RLE+ +    
Sbjct:   448 EGRERDMLLEREEMKKIQEEVRLKEKEAKDFRKGVMEMAGRLGELKMKRARLEKRLAFLS 507

Query:   491 SKVTKFSQKSLADEI 505
             SKV KF  +SL + +
Sbjct:   508 SKVEKFEGESLLENV 522

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2147937 AT5G11140 "AT5G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.8e-28, P = 2.8e-28
 Identities = 72/188 (38%), Positives = 113/188 (60%)

Query:   320 DSVSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLM 379
             D VSVG+Y V+A           +YGDI +N  L+S S R Y+LE L  VV ELQST L 
Sbjct:    55 DVVSVGEYKVKASLSSTLQSIFDKYGDITSNSKLQSLSTRTYHLETLAEVVIELQSTPLR 114

Query:   380 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE-FSTQHQTIDAAKANCVNLLE 438
             ++++++  E++A++ D+E+A+I V WLR++L E+ EA   F      +   KA    LL 
Sbjct:   115 RLSESRATEILAIVDDIETAKIRVGWLRSVLEEVLEATRYFDRCEMAVMEKKAGEHRLLL 174

Query:   439 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498
             + K+E+E  + +LA KEKE+   +E + KT  +L  LE++   L++ +   +SKV KF  
Sbjct:   175 A-KQEMELSLKKLAEKEKEMKEFREKLMKTTGKLGSLEMKRTCLDKRLVFLRSKVEKFQG 233

Query:   499 KSLADEIL 506
             +S+  +IL
Sbjct:   234 QSVFQDIL 241

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2039395 AT2G16860 "AT2G16860" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.1e-07, P = 8.1e-07
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query:    62 ERKVNPNCIKASNPYHECGERCFKRNGEANALGFKKQSEGVISVKKNEGRKVDPTCIKAS 121
             ER+V+P+CI ASNPYHEC E CFK+  EA A  F+KQ+ G+  V +     +D   I+  
Sbjct:     4 ERRVHPDCINASNPYHECVEYCFKKIAEAKAR-FEKQNTGLAKVHEQTREPLDDKRIEED 62

Query:   122 NPYHE 126
             +   E
Sbjct:    63 SSEEE 67

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085385 AT3G58270 "AT3G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 56/217 (25%), Positives = 105/217 (48%)

Query:   269 KVQAPIEIHHST-----EDGGEDIPSPADGSRNFSFSGIDLASG-DSDD--EEAQSVISD 320
             K+  P+E   +T     E    D+P  ++ +   + S +D   G +S+D  +EA SV  +
Sbjct:   139 KLDVPVESEETTTKALSELEENDVPEESEETTK-ALSKVDENDGAESNDSLKEASSV-KE 196

Query:   321 SVSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQEL-QSTSLM 379
             S+ V  + V             R+ DIA+    ++  +R+ Y+  L S+++ + QST   
Sbjct:   197 SMDVNGFRVLPSQVETVSCIFERHPDIASEFGPKNQHLRSAYMNVLLSLIKTMCQSTQ-- 254

Query:   380 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLES 439
             +++K  + +  A L  +  A ++++WL   L E+SE      + +  +A +   V+ +E 
Sbjct:   255 ELSKDDLSDADAALAYLTDAGLNLNWLEEKLEEVSE------KKENEEAGETR-VHEIEE 307

Query:   440 TKKELESQMNEL-ALKEKEVAGLKESVAKTKARLSDL 475
               KEL+ + + L A  EKE A +  SVA+      D+
Sbjct:   308 ELKELKLKCSNLEAQLEKEKADV--SVARAPFSFDDI 342

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085460 AT3G58220 "AT3G58220" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 73/318 (22%), Positives = 123/318 (38%)

Query:   171 AVDKVAVGGQKANGQHARSENYPKKKVES---ENGKSFS-RP-EHFSREIHPEDHSLNKE 225
             A  +++  G K   ++   E Y K+  E    E+ + +  RP E F  E   E     +E
Sbjct:   146 AAIEISEEGSKEGYEYESEEVYKKESEEGYKYESEEDYEKRPIERFEYESEAESKKDYEE 205

Query:   226 KVRSTQSVPPSENIKMNDMSKSPPK--ESVTSLPGASPSKNGKDNKVQAPIEIHH---ST 280
             + R       SE +   D  + P +  E  +       S+ G   + +   E      S 
Sbjct:   206 RTRGGFEYE-SEPVSKKDYEERPRESFEYESEAESKKDSEEGSRERYEYESEEESKKDSE 264

Query:   281 EDGGEDIPSPAD-GSR---NFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRAXXXXX 336
              D GE+    ++ GSR       +   + S DS ++  Q  + +++ +  + V       
Sbjct:   265 NDCGEESEKDSEEGSRPLKKIKRNDDGVKSNDSVNKTQQ--VKETMDINGFQVLPSQVTL 322

Query:   337 XXXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV 396
                   +Y DIA   N ++  +R   +  L S+++ L   S  +++   + E    L  V
Sbjct:   323 VSRILKKYPDIALGFNAKNRHLRTACMNVLISLIETL-CQSPQELSDEDMDEADNALVYV 381

Query:   397 ESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK 456
             + A   VDWL   L E+ E        QT    K     L E  K+  +  ++  AL EK
Sbjct:   382 QDAGFKVDWLDKKLKEVKEK---KVVEQT---GKTRIQELEEELKEFKQKCLDREALLEK 435

Query:   457 EVAGLKESVAKTKARLSD 474
             E A  K   A+    L D
Sbjct:   436 EKA--KVLAARASLTLDD 451

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IX0308 hypothetical protein (541 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	506
pfam05278	234	pfam05278, PEARLI-4, Arabidopsis phospholipase-lik	1e-65
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.002

>gnl|CDD|218534 pfam05278, PEARLI-4, Arabidopsis phospholipase-like protein (PEARLI 4)

 Score =  211 bits (539), Expect = 1e-65
 Identities = 99/193 (51%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 313 EAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQ 371
           + QSV+SDS VSVGKY VRAS+S+ LQ+II ++GDIA+N  L+S S R+YYLECL SVVQ
Sbjct: 42  DLQSVMSDSYVSVGKYRVRASVSTTLQAIIDKHGDIASNSKLQSLSTRSYYLECLASVVQ 101

Query: 372 ELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKA 431
           ELQST L Q+++++VKEM+AV+KD+ES +I V WLR++L E +EA+E+  Q +T    K 
Sbjct: 102 ELQSTPLRQLSESRVKEMLAVVKDLESVKIRVGWLRSVLEEFAEAVEYFDQQETAVVEKE 161

Query: 432 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 491
                +   K+E+E Q  EL  KEKEV   +E V +   RL +LE++  RLE+ +    S
Sbjct: 162 RHERDVLLKKQEMEKQEAELVRKEKEVKEFREKVEEMAGRLGELEMKRLRLEKRLDFLGS 221

Query: 492 KVTKFSQKSLADE 504
           KV KF  KS  DE
Sbjct: 222 KVEKFKGKSFLDE 234

This family contains several phospholipase-like proteins from Arabidopsis thaliana which are homologous to PEARLI 4. Length = 234

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 372 ELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF-STQHQTIDAAK 430
           E +   L    +   +E+ ++  ++ S +  ++ LR  L E+   +E    +   ++   
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732

Query: 431 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 490
               + LE  ++ELE    EL   ++ +  L+E +   +  L+ L+ E   LE+  QA Q
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792

Query: 491 SKVTKFSQK 499
            ++ +  ++
Sbjct: 793 EELEELEEE 801

Length = 1163

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 368 SVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID 427
            V++ L    ++ +   K +     L+ + S    +    + L       + +   +   
Sbjct: 20  EVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLP--KLNPLREEKK 77

Query: 428 AAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 483
                 V  LE   K++E ++ ++   EKE+  L+E +++ +  + +LE E  RLE
Sbjct: 78  KVS---VKSLEELIKDVEEELEKI---EKEIKELEEEISELENEIKELEQEIERLE 127

Length = 646

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	506
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	100.0
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	99.65
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	98.07
PRK11637	428	AmiB activator; Provisional	93.54
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.3
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.05
COG4026	290	Uncharacterized protein containing TOPRIM domain,	91.64
PHA02562	562	46 endonuclease subunit; Provisional	89.84
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	89.8
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	89.75
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	89.58
PRK11637	428	AmiB activator; Provisional	89.0
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	88.15
PRK04863	1486	mukB cell division protein MukB; Provisional	88.07
PRK13182	175	racA polar chromosome segregation protein; Reviewe	87.92
PF10186	302	Atg14: UV radiation resistance protein and autopha	87.83
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	87.62
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.49
PRK02224	880	chromosome segregation protein; Provisional	87.32
PRK01156	895	chromosome segregation protein; Provisional	87.12
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	86.52
PHA02562	562	46 endonuclease subunit; Provisional	86.39
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	86.07
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	85.7
PF04740	204	LXG: LXG domain of WXG superfamily; InterPro: IPR0	85.49
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.49
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.47
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	85.12
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.08
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.69
PRK02224	880	chromosome segregation protein; Provisional	84.65
COG3937	108	Uncharacterized conserved protein [Function unknow	84.4
PF10186	302	Atg14: UV radiation resistance protein and autopha	84.37
cd04776	118	HTH_GnyR Helix-Turn-Helix DNA binding domain of th	84.25
KOG1962	216	consensus B-cell receptor-associated protein and r	83.19
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	83.12
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	83.04
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	82.79
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.63
PRK04863	1486	mukB cell division protein MukB; Provisional	82.49
PRK05431	425	seryl-tRNA synthetase; Provisional	82.41
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	82.35
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	82.26
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	82.1
PF15112	307	DUF4559: Domain of unknown function (DUF4559)	82.04
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	82.03
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	82.0
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.86
PF02994	370	Transposase_22: L1 transposable element; InterPro:	81.78
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	80.97
PRK09343	121	prefoldin subunit beta; Provisional	80.3
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	80.23

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=100.00  E-value=2e-62  Score=481.30  Aligned_cols=216  Identities=50%  Similarity=0.738  Sum_probs=211.1

Q ss_pred             CCCCCCcccccccccccCC---CCCcccccccccce-EEeccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHH
Q 010595          289 SPADGSRNFSFSGIDLASG---DSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLE  364 (506)
Q Consensus       289 ~~~~es~sFsl~~i~~~~~---~~d~EE~~SvvsEt-VdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn  364 (506)
                      .-|++|+||||++|.+|.|   +++|||++|+++++ |+||||||++||+++|++||+||||||+||+++|++||++||+
T Consensus        50 ~l~~~s~sftl~~~~~~~~~~~~~~~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe  129 (269)
T PF05278_consen   50 ELPDESQSFTLSEIECMKGLKTNEGDEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLE  129 (269)
T ss_pred             CCCCcCccccHHHHHHHhcccccccchhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHH
Confidence            3568999999999999997   56788999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 010595          365 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL  444 (506)
Q Consensus       365 ~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkEL  444 (506)
                      +||+||++||++|+++||++||.+|+++|.||++|||+|+|||++|+||.++++++++|++++++|++.++.++..+.||
T Consensus       130 ~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL  209 (269)
T PF05278_consen  130 CLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL  209 (269)
T ss_pred             HHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 010595          445 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE  504 (506)
Q Consensus       445 Ee~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~  504 (506)
                      ++++++|+++++++++++.||++|++||++||+++++|+++|.+++|||++|+||||+|+
T Consensus       210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl~~~  269 (269)
T PF05278_consen  210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSLLDE  269 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence            999999999999999999999999999999999999999999999999999999999985

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=147.64  Aligned_cols=121  Identities=24%  Similarity=0.338  Sum_probs=107.6

Q ss_pred             ccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhhHHhcCcc
Q 010595          325 GKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQID  402 (506)
Q Consensus       325 nGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~--ksplqeLS~~dL~ea~~~L~dLe~aGfK  402 (506)
                      |||+|+++|++++..||++||++|+.|+.+++++|+.||+.||++|++++  +++ +.++..++.+|..++.+++.+||+
T Consensus       156 ~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~  234 (297)
T KOG1987|consen  156 NGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSL-QEASNYDLKEAKSALTYVIAAGFK  234 (297)
T ss_pred             ceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccH-HHhchhHHHHHHHHHHHHHhccch
Confidence            99999999999999999999999999999999999999999999999999  778 999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595          403 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  460 (506)
Q Consensus       403 VDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d  460 (506)
                      ||||.++++++.+.++              .+...+...+++++++..+..+......
T Consensus       235 ld~l~~~~~~~~~k~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (297)
T KOG1987|consen  235 LDWLEKKLNEVKEKKK--------------KDLWYEIRLQELEEELKSLKDKCSDLEG  278 (297)
T ss_pred             HhHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            9999999999998883              1345555666667777777766665554

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=98.07  E-value=0.00022  Score=68.47  Aligned_cols=127  Identities=20%  Similarity=0.346  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 010595          361 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST  440 (506)
Q Consensus       361 ~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~  440 (506)
                      ..|=+..+|++...+.-+.+ +.+.+..-..+|.+|+.-||+|.-|+.||+++...+.   .+..+.+.++..+..++..
T Consensus        47 Glm~~f~~l~e~v~~l~idd-~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~---~~~~~~e~~k~le~~~~~~  122 (190)
T PF05266_consen   47 GLMVTFANLAEKVKKLQIDD-SRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD---DQEKLLEERKKLEKKIEEK  122 (190)
T ss_pred             HHHHHHHHHHHHHHHcccCC-cHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888444 8999999999999999999999999999999887663   3333333333333333332


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595          441 ---KKELESQMNELALKEKEVAG----LKESVAKTKARLSDLELESNRLEQIIQATQS  491 (506)
Q Consensus       441 ---kkELEe~leeL~qKeKEv~d----~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS  491 (506)
                         .+++|+.+.+|.++--++.+    ++..-++....+.+|+-+...|.+.+.+++.
T Consensus       123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~  180 (190)
T PF05266_consen  123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL  180 (190)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               23344444444433333333    1112223334555666666666665555544

>PRK11637 AmiB activator; Provisional

Probab=93.54  E-value=3.2  Score=43.75  Aligned_cols=124  Identities=16%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             chhHHHHHHHHHHHHHHHHh-cchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHH-hhhhhhhHHHHHHh
Q 010595          355 SNSMRAYYLECLCSVVQELQ-STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE-FSTQHQTIDAAKAN  432 (506)
Q Consensus       355 n~~lRs~YMn~LlsLIetL~-ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare-~~~~~~~leeeKd~  432 (506)
                      ...+|.+|++-=.+.++.|- ..+.     .++......|..|.      ++-...|+++...++ +..+.+.++.++..
T Consensus       127 ~~rlra~Y~~g~~~~l~vLl~a~~~-----~~~~r~~~~l~~i~------~~d~~~l~~l~~~~~~L~~~k~~le~~~~~  195 (428)
T PRK11637        127 AAQLDAAFRQGEHTGLQLILSGEES-----QRGERILAYFGYLN------QARQETIAELKQTREELAAQKAELEEKQSQ  195 (428)
T ss_pred             HHHHHHHHHcCCCcHHHHHhcCCCh-----hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44577777744333333232 2221     22333333333333      234555666665553 22222233333322


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595          433 CVNLLESTKKELESQMNELALKEKE----VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV  493 (506)
Q Consensus       433 ~e~~~e~~kkELEe~leeL~qKeKE----v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV  493 (506)
                          ++....+++.+..+|....++    +..++..+.+....|.+|+....+|.+.|..++-..
T Consensus       196 ----l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~~  256 (428)
T PRK11637        196 ----QKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREA  256 (428)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                233334444444444433333    555666666677777888877777777776655443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.30  E-value=6.5  Score=40.86  Aligned_cols=64  Identities=19%  Similarity=0.370  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 010595          438 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL  501 (506)
Q Consensus       438 e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl  501 (506)
                      ..++.+|.+...++..+.+++.+.+.++.+...++.....+-..+...|..+.+.+++-.+.+.
T Consensus       207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~  270 (312)
T smart00787      207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF  270 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3345556666666666666666666666666666666666666666666666666666665554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=92.05  E-value=6.9  Score=40.26  Aligned_cols=38  Identities=32%  Similarity=0.511  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010595          440 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL  477 (506)
Q Consensus       440 ~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~  477 (506)
                      ++++|.+.-.++..+.+++.+.+.++.++.+.+..+..
T Consensus       214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~  251 (325)
T PF08317_consen  214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE  251 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444333333333333333333333333333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=91.64  E-value=1.3  Score=44.96  Aligned_cols=58  Identities=21%  Similarity=0.216  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595          440 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS  497 (506)
Q Consensus       440 ~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~  497 (506)
                      ..+|-++.+++|.+++.++.+.++|+..++..+++|+.+..+|.--+.+++-+.+.+.
T Consensus       147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            3344445555666666666666667777777777777766666555556666555543

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.84  E-value=7.7  Score=41.47  Aligned_cols=52  Identities=13%  Similarity=0.229  Sum_probs=22.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595          431 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL  482 (506)
Q Consensus       431 d~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L  482 (506)
                      ...+..+...+..+++...++...+.++..+..++.+...+|.+|+.+..++
T Consensus       340 ~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~  391 (562)
T PHA02562        340 LELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI  391 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444444444333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=89.80  E-value=6.1  Score=48.07  Aligned_cols=52  Identities=6%  Similarity=0.137  Sum_probs=43.4

Q ss_pred             hhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH
Q 010595          378 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA  429 (506)
Q Consensus       378 lqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leee  429 (506)
                      |-.+++.+|..+...+..|++..=+|+=|+.++..+.+....++.|......
T Consensus       214 l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~  265 (1353)
T TIGR02680       214 LPPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLR  265 (1353)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3679999999999999999999999999999888888888777777664433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=89.75  E-value=5  Score=37.08  Aligned_cols=37  Identities=14%  Similarity=0.411  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595          462 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  498 (506)
Q Consensus       462 ~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~  498 (506)
                      ++.+.++++-|.++..+...+...|..|..|+...++
T Consensus        88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3466667777777777777777777777777776654

The region featured in this family is approximately 100 amino acids long.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=89.58  E-value=16  Score=41.69  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=9.6

Q ss_pred             EEeccEEeecchHHHHHHHHhhcc
Q 010595          322 VSVGKYHVRASISSILQSIISRYG  345 (506)
Q Consensus       322 VdVnGFqVlpSqv~iV~~IFeKHp  345 (506)
                      ..+||..+..  . -|..+|...|
T Consensus       112 ~~~~~~~~~~--~-~~~~~l~~~~  132 (1179)
T TIGR02168       112 YFINGQPCRL--K-DIQDLFLDTG  132 (1179)
T ss_pred             eeECCCcccH--H-HHHHHHhccC
Confidence            3466655421  2 2445554443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK11637 AmiB activator; Provisional

Probab=89.00  E-value=14  Score=39.08  Aligned_cols=17  Identities=18%  Similarity=0.139  Sum_probs=7.3

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 010595          357 SMRAYYLECLCSVVQEL  373 (506)
Q Consensus       357 ~lRs~YMn~LlsLIetL  373 (506)
                      .+|-..+-+||.++-.+
T Consensus        19 ~~~~~~~~~ll~~~~~~   35 (428)
T PRK11637         19 AIRPILYASVLSAGVLL   35 (428)
T ss_pred             hhhhHHHHHHHHHHHHH
Confidence            34444444444443333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=88.15  E-value=22  Score=40.87  Aligned_cols=47  Identities=15%  Similarity=0.127  Sum_probs=24.3

Q ss_pred             EEeccEEeecchHHHHHHHHhhccccc-----------ccCcccchhHHHHHHHHHHHHHH
Q 010595          322 VSVGKYHVRASISSILQSIISRYGDIA-----------ANCNLESNSMRAYYLECLCSVVQ  371 (506)
Q Consensus       322 VdVnGFqVlpSqv~iV~~IFeKHpDIA-----------snf~lKn~~lRs~YMn~LlsLIe  371 (506)
                      ..+||-.|.   ..-+..+|...|=..           ..|...++.-|..|++-+.++..
T Consensus       110 ~~~n~~~~~---~~~~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~  167 (1164)
T TIGR02169       110 YYLNGQRVR---LSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAE  167 (1164)
T ss_pred             EEECCcccc---HHHHHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHH
Confidence            567775552   344566665544111           12333356666666777666433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=88.07  E-value=16  Score=45.28  Aligned_cols=154  Identities=16%  Similarity=0.209  Sum_probs=73.0

Q ss_pred             EeecchHHHHHHHHhh-cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhc--cHHHHHHHHHHHhhHHhcCcchh
Q 010595          328 HVRASISSILQSIISR-YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQM--TKAKVKEMMAVLKDVESAQIDVD  404 (506)
Q Consensus       328 qVlpSqv~iV~~IFeK-HpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeL--S~~dL~ea~~~L~dLe~aGfKVD  404 (506)
                      +|-.+.....+++|.. -..+|++| ++++.=|...++-++++=+.+.+.- ..|  ++..|..+...|.          
T Consensus       250 ~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~-kkLe~tE~nL~rI~diL~----------  317 (1486)
T PRK04863        250 RVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSR-RQLAAEQYRLVEMARELA----------  317 (1486)
T ss_pred             HhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----------
Confidence            4445556666666654 35677777 6666666666666655544443332 211  2222333333333          


Q ss_pred             hhhhHHHHHHHHHHhhhhhhhHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010595          405 WLRNILNEISEAIEFSTQHQTIDAA-------KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL  477 (506)
Q Consensus       405 WL~kKLeEV~Eare~~~~~~~leee-------Kd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~  477 (506)
                      =|..+|..+.+..+.+.+|..+..+       .......++++..++++..+.|.+.+.++.+..+++.++.+++..|+.
T Consensus       318 ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqe  397 (1486)
T PRK04863        318 ELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKS  397 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455444444444444444333       112222333334444444444444444444444455555555555554


Q ss_pred             hhhhHHHHHHHhhhhh
Q 010595          478 ESNRLEQIIQATQSKV  493 (506)
Q Consensus       478 ess~L~k~v~~~kSKV  493 (506)
                      +..++.+.+..++.++
T Consensus       398 qLaelqqel~elQ~el  413 (1486)
T PRK04863        398 QLADYQQALDVQQTRA  413 (1486)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444443

>PRK13182 racA polar chromosome segregation protein; Reviewed

Probab=87.92  E-value=4.7  Score=38.82  Aligned_cols=134  Identities=12%  Similarity=0.163  Sum_probs=69.7

Q ss_pred             ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH-HHHHHHHhhhhh
Q 010595          345 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN-EISEAIEFSTQH  423 (506)
Q Consensus       345 pDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe-EV~Eare~~~~~  423 (506)
                      +++|..+.+....+|.+|=.-++. +..-. +--+.++++|| .....+..+.++|+.+.=++...- ++..+.=.....
T Consensus         4 ~evA~~lGVS~~TLRrw~k~g~L~-~~R~~-~G~R~y~~~dl-~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~   80 (175)
T PRK13182          4 PFVAKKLGVSPKTVQRWVKQLNLP-CEKNE-YGHYIFTEEDL-QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQ   80 (175)
T ss_pred             HHHHHHHCcCHHHHHHHHHcCCCC-CCcCC-CCCEEECHHHH-HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCC
Confidence            345556666666677766555543 11111 12477899999 789999999999999876654221 110000000011


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHhhhhHHHH
Q 010595          424 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG---------LKESVAKTKARLSDLELESNRLEQI  485 (506)
Q Consensus       424 ~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d---------~~eRv~e~k~RL~~LE~ess~L~k~  485 (506)
                      .++.+.    -.+++...+.|++.+++|.+..+..+|         =|..++||..+|..||....++++.
T Consensus        81 ~t~~~R----~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~  147 (175)
T PRK13182         81 NISSVD----FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI  147 (175)
T ss_pred             ccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111111    122333333344444444433333333         1456667777777777766666553

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=87.83  E-value=11  Score=36.66  Aligned_cols=15  Identities=33%  Similarity=0.348  Sum_probs=8.2

Q ss_pred             cchhhhhhHHHHHHH
Q 010595          401 IDVDWLRNILNEISE  415 (506)
Q Consensus       401 fKVDWL~kKLeEV~E  415 (506)
                      ...+=|+.+++++.+
T Consensus        34 ~~~~~l~~~i~~~l~   48 (302)
T PF10186_consen   34 EENEELRRRIEEILE   48 (302)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334555566666555

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=87.62  E-value=5.9  Score=40.96  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=67.9

Q ss_pred             hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595          419 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  498 (506)
Q Consensus       419 ~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~  498 (506)
                      |.+++.....--.++-.+....++||+.|-+.+...|++...|+.+-..+-.-|..+=.+...+.+-+..++-|+++..+
T Consensus       221 Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~  300 (309)
T PF09728_consen  221 YSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK  300 (309)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555455668888899999999999999999999999999999999999999999999999999999887643

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.49  E-value=5.3  Score=45.78  Aligned_cols=130  Identities=16%  Similarity=0.253  Sum_probs=63.0

Q ss_pred             eecchHHHHHHHHhhccc--cc---ccCcccchhHHHHHHHHHHHHHHHHhcchh--hhccHHHHHHHHHHHhhHHhcCc
Q 010595          329 VRASISSILQSIISRYGD--IA---ANCNLESNSMRAYYLECLCSVVQELQSTSL--MQMTKAKVKEMMAVLKDVESAQI  401 (506)
Q Consensus       329 VlpSqv~iV~~IFeKHpD--IA---snf~lKn~~lRs~YMn~LlsLIetL~kspl--qeLS~~dL~ea~~~L~dLe~aGf  401 (506)
                      ..+++...++.||.+-..  |.   ++ +...+.-. -.+++|..-++.|..--+  +++-..+|..-...|....+.++
T Consensus       501 ~~~sF~~~Ik~lL~r~~~qPill~s~~-k~~~p~~~-E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql  578 (717)
T PF10168_consen  501 SPPSFEKHIKSLLQRSSSQPILLKSSD-KSSSPSPQ-ECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQL  578 (717)
T ss_pred             ccchHHHHHHHHhcCCCCCCeecCCCc-cccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358899999999986421  22   22 11222222 244666666666654322  23344555555555555554322


Q ss_pred             -chhhhhhHHHHHHHH-HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595          402 -DVDWLRNILNEISEA-IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  460 (506)
Q Consensus       402 -KVDWL~kKLeEV~Ea-re~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d  460 (506)
                       +++=|+.+.+.|.+. .++.+++..+.++.+.+.++++.+.+.+...+-.|...|+++++
T Consensus       579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~  639 (717)
T PF10168_consen  579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK  639 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence             112222222333221 23444555555555555555555555554444445555555444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK02224 chromosome segregation protein; Provisional

Probab=87.32  E-value=14  Score=42.03  Aligned_cols=32  Identities=9%  Similarity=0.263  Sum_probs=13.0

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 010595          402 DVDWLRNILNEISEAIEFSTQHQTIDAAKANC  433 (506)
Q Consensus       402 KVDWL~kKLeEV~Eare~~~~~~~leeeKd~~  433 (506)
                      .++=|+.+++.+....+.-.+...+....+..
T Consensus       490 ~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l  521 (880)
T PRK02224        490 EVEEVEERLERAEDLVEAEDRIERLEERREDL  521 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445554444443333333333333333

>PRK01156 chromosome segregation protein; Provisional

Probab=87.12  E-value=11  Score=43.10  Aligned_cols=24  Identities=13%  Similarity=0.098  Sum_probs=10.2

Q ss_pred             HHHhhHHhcCcchhhhhhHHHHHH
Q 010595          391 AVLKDVESAQIDVDWLRNILNEIS  414 (506)
Q Consensus       391 ~~L~dLe~aGfKVDWL~kKLeEV~  414 (506)
                      ..+..++...=++.+++.++.++.
T Consensus       319 ~~l~~~e~~~~~~e~~~~~~~e~~  342 (895)
T PRK01156        319 AEINKYHAIIKKLSVLQKDYNDYI  342 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334443334444444444443

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=86.52  E-value=11  Score=35.01  Aligned_cols=75  Identities=17%  Similarity=0.273  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595          408 NILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ  487 (506)
Q Consensus       408 kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~  487 (506)
                      +.|+.|.++..         ..|+-+..++..+..+|+++.+=..+-.++|.+++.-+..+..-+..++.....|+-.|.
T Consensus        50 kql~~vs~~l~---------~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~  120 (126)
T PF07889_consen   50 KQLEQVSESLS---------STKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID  120 (126)
T ss_pred             HHHHHHHHHHH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777666553         122223344555555555555555555555666666666666666666666665555555


Q ss_pred             Hhhh
Q 010595          488 ATQS  491 (506)
Q Consensus       488 ~~kS  491 (506)
                      .+..
T Consensus       121 ~ie~  124 (126)
T PF07889_consen  121 EIEE  124 (126)
T ss_pred             HHhc
Confidence            5443

The region featured in this family is approximately 100 amino acids long.

>PHA02562 46 endonuclease subunit; Provisional

Probab=86.39  E-value=11  Score=40.24  Aligned_cols=95  Identities=13%  Similarity=0.218  Sum_probs=40.9

Q ss_pred             hcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHH
Q 010595          398 SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNE-------LALKEKEVAGLKESVAKTKA  470 (506)
Q Consensus       398 ~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~lee-------L~qKeKEv~d~~eRv~e~k~  470 (506)
                      .+.-++++|+..+.++....+-+..+  ++.........+...++++++.+.+       +.+.+.++.+++..+.+..+
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~~~~~~--i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~  255 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIKTYNKN--IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSA  255 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence            44455667777777665554322111  1111111122233333333333333       33333444444334444444


Q ss_pred             HHHHHHHhhhhHHHHHHHhhhhhh
Q 010595          471 RLSDLELESNRLEQIIQATQSKVT  494 (506)
Q Consensus       471 RL~~LE~ess~L~k~v~~~kSKV~  494 (506)
                      .|..++....+++..+..++.-..
T Consensus       256 ~L~~l~~~~~~~~~~l~~~~~~~~  279 (562)
T PHA02562        256 ALNKLNTAAAKIKSKIEQFQKVIK  279 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555544443333

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=86.07  E-value=14  Score=31.81  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595          461 LKESVAKTKARLSDLELESNRLEQII  486 (506)
Q Consensus       461 ~~eRv~e~k~RL~~LE~ess~L~k~v  486 (506)
                      +.+++.+++..|..||.+...++..+
T Consensus        72 l~~e~~~lk~~i~~le~~~~~~e~~l   97 (108)
T PF02403_consen   72 LKAEVKELKEEIKELEEQLKELEEEL   97 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555554444433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=85.70  E-value=36  Score=33.23  Aligned_cols=18  Identities=17%  Similarity=0.532  Sum_probs=11.6

Q ss_pred             hhHHHHHHHHHHH---HHHHH
Q 010595          356 NSMRAYYLECLCS---VVQEL  373 (506)
Q Consensus       356 ~~lRs~YMn~Lls---LIetL  373 (506)
                      ..++.||=++..+   +|.+|
T Consensus        12 ~~iK~YYndIT~~NL~lIksL   32 (201)
T PF13851_consen   12 QEIKNYYNDITLNNLELIKSL   32 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            5688899777644   44444

>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein

Probab=85.49  E-value=29  Score=32.57  Aligned_cols=54  Identities=26%  Similarity=0.365  Sum_probs=33.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcC---cchhhhhhHH
Q 010595          355 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ---IDVDWLRNIL  410 (506)
Q Consensus       355 n~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aG---fKVDWL~kKL  410 (506)
                      --..|++|-++.+-||+-|...- .++... |......+.++....   ++-+||+.-|
T Consensus        48 ~dsiK~y~~~vh~pll~~~~~~~-~~~~~~-l~~~~~~~~~vd~~~~a~i~e~~L~~el  104 (204)
T PF04740_consen   48 YDSIKNYFSEVHIPLLQGLILLL-EEYQEA-LKFIKDFQSEVDSSSNAIIDEDFLESEL  104 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHhHHHHHHHHcccccccccHHHHHHHH
Confidence            34677888887887777776554 333333 355555555665433   8888888444

However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.49  E-value=28  Score=36.32  Aligned_cols=50  Identities=20%  Similarity=0.273  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 010595          435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ  484 (506)
Q Consensus       435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k  484 (506)
                      ..+.....+++.+..+|.++++++.+...+|++..++..++..+-..+++
T Consensus       211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555566666666666666656666665555555555555444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.47  E-value=12  Score=39.04  Aligned_cols=54  Identities=20%  Similarity=0.263  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595          407 RNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  460 (506)
Q Consensus       407 ~kKLeEV~Ear-e~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d  460 (506)
                      +..|.||-|+- +-+-..++|+.+|.++.-.+..++.+|+++.+.|+++.++..+
T Consensus        83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e  137 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE  137 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777654 5667789999999999999999999999999999999999866

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=85.12  E-value=33  Score=32.03  Aligned_cols=57  Identities=25%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595          435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS  491 (506)
Q Consensus       435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS  491 (506)
                      ..+...+...+...+++...++++.+.+.++.+.+..+.++......+.+.+.+.++
T Consensus       130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (191)
T PF04156_consen  130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE  186 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444455445555555667777777777776666666666655554

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.08  E-value=9.4  Score=43.88  Aligned_cols=57  Identities=21%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010595          433 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT  489 (506)
Q Consensus       433 ~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~  489 (506)
                      +.+.+..++.+++.++++|.+.+++.++++++-+.+.+|+.++.+.-..|.+++..+
T Consensus       563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v  619 (717)
T PF10168_consen  563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV  619 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555544433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.69  E-value=5.4  Score=40.77  Aligned_cols=8  Identities=50%  Similarity=0.734  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010595          469 KARLSDLE  476 (506)
Q Consensus       469 k~RL~~LE  476 (506)
                      +.|+.+|+
T Consensus       197 ~~r~~ELe  204 (290)
T COG4026         197 KKRWDELE  204 (290)
T ss_pred             HHHHHHhc
Confidence            33333333

>PRK02224 chromosome segregation protein; Provisional

Probab=84.65  E-value=16  Score=41.57  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=19.4

Q ss_pred             HHHHHHhhcccccccCcccchhHHHHHHHHHHHH
Q 010595          336 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSV  369 (506)
Q Consensus       336 iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsL  369 (506)
                      +.+.||-..|+|..=+ -.+|.=|...+.=|++|
T Consensus       129 f~~~~~i~Qge~~~~l-~~~p~~R~~ii~~l~~l  161 (880)
T PRK02224        129 FVNCAYVRQGEVNKLI-NATPSDRQDMIDDLLQL  161 (880)
T ss_pred             hcceeEeeccChHHHH-cCCHHHHHHHHHHHhCC
Confidence            4455566667765443 34566666666666665

>COG3937 Uncharacterized conserved protein [Function unknown]

Probab=84.40  E-value=7.3  Score=35.47  Aligned_cols=38  Identities=24%  Similarity=0.436  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 010595          442 KELESQMNELA-LKEKEVAGLKESVAKTKARLSDLELES  479 (506)
Q Consensus       442 kELEe~leeL~-qKeKEv~d~~eRv~e~k~RL~~LE~es  479 (506)
                      +.|+.++.++. ..+++|.+.++||.+.+.++..||.+.
T Consensus        68 r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~  106 (108)
T COG3937          68 RKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL  106 (108)
T ss_pred             HHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            33555544444 334566777788888888888887654

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=84.37  E-value=18  Score=35.11  Aligned_cols=24  Identities=17%  Similarity=0.432  Sum_probs=11.1

Q ss_pred             hhHHhcCcchhhhhhHHHHHHHHH
Q 010595          394 KDVESAQIDVDWLRNILNEISEAI  417 (506)
Q Consensus       394 ~dLe~aGfKVDWL~kKLeEV~Ear  417 (506)
                      .++.....++.+|+.+++++....
T Consensus        63 ~~~~~~~~r~~~l~~~i~~~~~~i   86 (302)
T PF10186_consen   63 REIEELRERLERLRERIERLRKRI   86 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555554444333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR

Probab=84.25  E-value=15  Score=32.68  Aligned_cols=32  Identities=9%  Similarity=0.245  Sum_probs=21.9

Q ss_pred             hhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH
Q 010595          379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN  411 (506)
Q Consensus       379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe  411 (506)
                      +-.+.++|..+..+.. |++.||.|+=.+.-|+
T Consensus        35 R~Y~~~~l~~l~~I~~-lr~~G~~L~~I~~~l~   66 (118)
T cd04776          35 RVYSRRDRARLKLILR-GKRLGFSLEEIRELLD   66 (118)
T ss_pred             cccCHHHHHHHHHHHH-HHHCCCCHHHHHHHHH
Confidence            5677788776655544 8889998765555444

Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=83.19  E-value=50  Score=33.33  Aligned_cols=76  Identities=18%  Similarity=0.202  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595          407 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL  482 (506)
Q Consensus       407 ~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L  482 (506)
                      ++--++...+++....+..++++.+......+.++.|+++...+|...++++...+.+.++...--.+|-++.++|
T Consensus       130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L  205 (216)
T KOG1962|consen  130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL  205 (216)
T ss_pred             HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3334444444444444444555555544555556666766666666666666666666665555555555555554

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=83.12  E-value=29  Score=41.59  Aligned_cols=83  Identities=13%  Similarity=0.138  Sum_probs=47.7

Q ss_pred             ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhh
Q 010595          345 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQ  424 (506)
Q Consensus       345 pDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~  424 (506)
                      |+|..=...+....|. |++=..++..--.      --+.-...+..+..-|......++=|+++|+.+...++.+..|+
T Consensus       144 G~V~~i~~~kp~err~-iiEEaaGv~~y~~------r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~  216 (1163)
T COG1196         144 GKVEEIINAKPEERRK-LIEEAAGVSKYKE------RKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQ  216 (1163)
T ss_pred             ccHHHHHcCCHHHHHH-HHHHHhchHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555555 6666555544321      11122222333333444444666788888888888888888888


Q ss_pred             hHHHHHHhhH
Q 010595          425 TIDAAKANCV  434 (506)
Q Consensus       425 ~leeeKd~~e  434 (506)
                      +++.++...+
T Consensus       217 ~l~~e~~~~~  226 (1163)
T COG1196         217 ELKAELRELE  226 (1163)
T ss_pred             HHHHHHHHHH
Confidence            8888766433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=83.04  E-value=15  Score=41.38  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHH
Q 010595          463 ESVAKTKARLSDLELESNRLEQ  484 (506)
Q Consensus       463 eRv~e~k~RL~~LE~ess~L~k  484 (506)
                      .+.++.+.|+.+||.....|.+
T Consensus       213 ~q~~e~~~ri~~LEedi~~l~q  234 (546)
T PF07888_consen  213 EQLAEARQRIRELEEDIKTLTQ  234 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555544444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00634 recN DNA repair protein RecN

Probab=82.79  E-value=16  Score=40.19  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             eEEeccEEeecchH-HHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhH---
Q 010595          321 SVSVGKYHVRASIS-SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV---  396 (506)
Q Consensus       321 tVdVnGFqVlpSqv-~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dL---  396 (506)
                      ...|||-.|..+++ .+.+.++.-||.... ..+-++..+-.+|+-+.++.+.+.+.  +.+ -.++.++...|..+   
T Consensus       108 ~~~iNg~~v~~~~l~~l~~~li~i~gQ~~~-~~l~~~~~~~~lLD~~~~~~~~~~~~--~~~-~~~~~~~~~~L~~l~~~  183 (563)
T TIGR00634       108 RAYLNGKPVSASSLLEFTSELLDLHGQHDQ-QLLFRPDEQRQLLDTFAGANEKVKAY--REL-YQAWLKARQQLKDRQQK  183 (563)
T ss_pred             EEEECCEEccHHHHHHHhcCeEEEECchHH-HHhcCHHHHHHHHHHhcCchHHHHHH--HHH-HHHHHHHHHHHHHHHhh
Confidence            37899988866554 333334555888864 44557777777888777743322222  222 45555555555554   


Q ss_pred             -HhcCcchhhhhhHHHHHHHHH
Q 010595          397 -ESAQIDVDWLRNILNEISEAI  417 (506)
Q Consensus       397 -e~aGfKVDWL~kKLeEV~Ear  417 (506)
                       +...=+++||+..|+||.++.
T Consensus       184 ~~~~~~eld~L~~ql~ELe~~~  205 (563)
T TIGR00634       184 EQELAQRLDFLQFQLEELEEAD  205 (563)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCC
Confidence             334556778888877776443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.63  E-value=34  Score=34.85  Aligned_cols=19  Identities=26%  Similarity=0.309  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHhhhhH
Q 010595          464 SVAKTKARLSDLELESNRL  482 (506)
Q Consensus       464 Rv~e~k~RL~~LE~ess~L  482 (506)
                      .+.+.+++|.+++.....+
T Consensus       125 ~i~~l~~~~~~~e~~~~e~  143 (239)
T COG1579         125 EIEDLKERLERLEKNLAEA  143 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333344444444333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=82.49  E-value=25  Score=43.76  Aligned_cols=17  Identities=24%  Similarity=0.153  Sum_probs=6.6

Q ss_pred             cchhhhhhHHHHHHHHH
Q 010595          401 IDVDWLRNILNEISEAI  417 (506)
Q Consensus       401 fKVDWL~kKLeEV~Ear  417 (506)
                      -++.=++..|.||....
T Consensus       307 ~nL~rI~diL~ELe~rL  323 (1486)
T PRK04863        307 YRLVEMARELAELNEAE  323 (1486)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333334444444333

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=82.41  E-value=11  Score=40.42  Aligned_cols=42  Identities=21%  Similarity=0.314  Sum_probs=27.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 010595          459 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS  500 (506)
Q Consensus       459 ~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kS  500 (506)
                      .+++++..+++++|.+||.+...++..+..+-.++=++...+
T Consensus        69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~  110 (425)
T PRK05431         69 EALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDS  110 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            345556667777777777777777777766666665554433

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.35  E-value=8.9  Score=40.99  Aligned_cols=58  Identities=24%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595          435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK  495 (506)
Q Consensus       435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k  495 (506)
                      +++++....+..++++|++-+++++.-..++.+++++   ||-+...|.+.++-|++||+.
T Consensus       221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~et---LEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKET---LEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Confidence            3333334444455566666666666654444444444   345556666666667777665

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.26  E-value=54  Score=37.30  Aligned_cols=72  Identities=24%  Similarity=0.348  Sum_probs=35.7

Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595          424 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT---KARLSDLELESNRLEQIIQATQSKVTK  495 (506)
Q Consensus       424 ~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~---k~RL~~LE~ess~L~k~v~~~kSKV~k  495 (506)
                      ..++.++...+..++.++.|+++..+|+....++..+++.+|+--   -+-..++-.++.+|.+.|..++++.+.
T Consensus       283 ~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~  357 (581)
T KOG0995|consen  283 SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDR  357 (581)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555556666666666665555555555555555444311   112223334444555555555555444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.10  E-value=55  Score=32.28  Aligned_cols=7  Identities=43%  Similarity=0.662  Sum_probs=2.5

Q ss_pred             hhHHHHH
Q 010595          480 NRLEQII  486 (506)
Q Consensus       480 s~L~k~v  486 (506)
                      ..|.+.|
T Consensus       200 ~~Le~~i  206 (237)
T PF00261_consen  200 KKLEKEI  206 (237)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF15112 DUF4559: Domain of unknown function (DUF4559)

Probab=82.04  E-value=53  Score=34.73  Aligned_cols=60  Identities=10%  Similarity=0.204  Sum_probs=43.9

Q ss_pred             hHHHHHHHHhhccccc--ccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcC
Q 010595          333 ISSILQSIISRYGDIA--ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ  400 (506)
Q Consensus       333 qv~iV~~IFeKHpDIA--snf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aG  400 (506)
                      ....|+.|++=-=+|-  +++++.++.||. |+..|.++..++..-|       ++..|+..+..|...-
T Consensus       138 d~~~v~eVI~~RN~~MHS~emkvs~~wm~~-~~~~i~nll~~f~~ip-------e~~~a~~~Ie~ll~~d  199 (307)
T PF15112_consen  138 DRKKVREVIKCRNEIMHSSEMKVSSQWMRD-FQMKIQNLLNEFRNIP-------EIVAAGSRIEQLLTSD  199 (307)
T ss_pred             cHHHHHHHHHHHHHhhcCcccccCHHHHHH-HHHHHHHHHHHhccCh-------HHHHHHHHHHHHHhhh
Confidence            7788888888766664  556666777775 7788888888887777       6777777777776443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=82.03  E-value=30  Score=35.12  Aligned_cols=40  Identities=10%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010595          466 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI  505 (506)
Q Consensus       466 ~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l  505 (506)
                      .+...+|.+++.+...+...+..++..+.+..-.+.+||.
T Consensus       242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~  281 (423)
T TIGR01843       242 EEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGT  281 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcE
Confidence            3445556666666666666677777777777777788875

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.00  E-value=37  Score=31.59  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595          464 SVAKTKARLSDLELESNRLEQIIQATQSKV  493 (506)
Q Consensus       464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV  493 (506)
                      +...+.-+...|+..+..+++.+.-+..|.
T Consensus       109 ~ae~~eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen  109 KAEHFERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             HhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            333344444445555555555554444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.86  E-value=54  Score=33.87  Aligned_cols=39  Identities=10%  Similarity=0.099  Sum_probs=18.9

Q ss_pred             HHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhc
Q 010595          336 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQS  375 (506)
Q Consensus       336 iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~k  375 (506)
                      +=..|+.-.|-+...+..-++.+|. -|+.=+.+|.+.+.
T Consensus        94 ~E~~~~~~nPpLf~EY~~a~~d~r~-~m~~q~~~vK~~aR  132 (325)
T PF08317_consen   94 IEEETYESNPPLFREYYTADPDMRL-LMDNQFQLVKTYAR  132 (325)
T ss_pred             HHHHHhhcCCHHHHHHHcCCHHHHH-HHHHHHHHHHHHHH
Confidence            3344444455544444444555553 35555555555443

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=81.78  E-value=2  Score=45.15  Aligned_cols=42  Identities=19%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595          457 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  498 (506)
Q Consensus       457 Ev~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~  498 (506)
                      .|.++.+||.++.+|+.+++.....+.+.+..+..|++.+.+
T Consensus       145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn  186 (370)
T PF02994_consen  145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN  186 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            344444455555555555555445555555566666665544

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=80.97  E-value=18  Score=43.49  Aligned_cols=38  Identities=18%  Similarity=0.198  Sum_probs=17.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010595          453 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ  490 (506)
Q Consensus       453 qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~k  490 (506)
                      ++.++..++++.+.++.+++...+.+...|.+.+.+..
T Consensus       419 ~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~  456 (1074)
T KOG0250|consen  419 SLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS  456 (1074)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444445555555545555544444443

>PRK09343 prefoldin subunit beta; Provisional

Probab=80.30  E-value=27  Score=31.45  Aligned_cols=43  Identities=23%  Similarity=0.275  Sum_probs=35.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595          455 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS  497 (506)
Q Consensus       455 eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~  497 (506)
                      .+...++.+|++-+..+|..||.....|.+.+..+..+++...
T Consensus        70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll  112 (121)
T PRK09343         70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML  112 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444557779999999999999999999999999999888764

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=80.23  E-value=39  Score=37.90  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=10.7

Q ss_pred             HHHHhhhhHHHHHHHhhhhhhhcc
Q 010595          474 DLELESNRLEQIIQATQSKVTKFS  497 (506)
Q Consensus       474 ~LE~ess~L~k~v~~~kSKV~kF~  497 (506)
                      +|+.+...+...+...+..+.+|.
T Consensus       266 ~Le~ei~~le~e~~e~~~~l~~l~  289 (650)
T TIGR03185       266 QLERQLKEIEAARKANRAQLRELA  289 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	506
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 49/386 (12%), Positives = 103/386 (26%), Gaps = 117/386 (30%)

Query: 167 LTPRAVDKVAVGGQKANGQHARS-----ENYPKKKVESENGKSFSRPEHFSREIHPEDHS 221
           L+   +D +     K              +  ++ V+            F  E+   ++ 
Sbjct: 46  LSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQK-----------FVEEVLRINYK 92

Query: 222 LNKEKVRSTQSVPPSENIKM---------NDMSKSPP-----KESVTSLPGA----SPSK 263
                ++ T+   PS   +M         ND            +    L  A     P+K
Sbjct: 93  FLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 264 NGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGID-LASGDSDDEEAQSVISDSV 322
           N         + I       G               SG   +A       + Q  +   +
Sbjct: 152 N---------VLIDG---VLG---------------SGKTWVALDVCLSYKVQCKMDFKI 184

Query: 323 ---SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLM 379
              ++   +   ++  +LQ ++ +   I  N    S+      L         +Q+    
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRI-----HSIQAELRR 236

Query: 380 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTI----DAAKANCVN 435
            +     +  + VL +V++A+    W          A  F+   + +         + ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKA---W---------NA--FNLSCKILLTTRFKQVTDFLS 282

Query: 436 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES---------------- 479
              +T   +    + + L   EV  L       +    DL  E                 
Sbjct: 283 --AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLPREVLTTNPRRLSIIAESIR 338

Query: 480 ---NRLEQIIQATQSKVTKFSQKSLA 502
                 +        K+T   + SL 
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLN 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	506
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.91
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	91.85
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.28
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.07
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	89.33
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	89.19
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.97
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.7
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	87.69
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	87.54
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	85.74
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.56
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	83.59
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	82.54
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	82.39
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	82.14
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	82.05
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	81.57
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	81.33
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.56

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.08  E-value=0.71  Score=47.54  Aligned_cols=58  Identities=17%  Similarity=0.249  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595          436 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV  493 (506)
Q Consensus       436 ~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV  493 (506)
                      .....+++++++.+++...++++.+++.+++++++++.+|..+.+.+.+-+..+..|+
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333444555555666666677777777788888888888777777655444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.91  E-value=1.3  Score=50.81  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595          433 CVNLLESTKKELESQMNELALKEKEVAGLKESV----AKTKARLSDLELESNRLEQIIQATQSKVTK  495 (506)
Q Consensus       433 ~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv----~e~k~RL~~LE~ess~L~k~v~~~kSKV~k  495 (506)
                      .+..+..+.+|+++.-+++....+|.++..++.    .++.+.+..|+.+...|.+.+.++.+.+.+
T Consensus       982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A          982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444433333    245577777888888888888887765443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=91.85  E-value=2.6  Score=37.02  Aligned_cols=19  Identities=32%  Similarity=0.335  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHhhhhH
Q 010595          464 SVAKTKARLSDLELESNRL  482 (506)
Q Consensus       464 Rv~e~k~RL~~LE~ess~L  482 (506)
                      ++..+..++..++.+...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~  102 (284)
T 1c1g_A           84 DVASLNRRIQLFEEELDRA  102 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333334444443333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.28  E-value=3.2  Score=37.23  Aligned_cols=52  Identities=21%  Similarity=0.208  Sum_probs=25.6

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010595          425 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE  476 (506)
Q Consensus       425 ~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE  476 (506)
                      .++.+.+..++.+..++.++.+...++....+++.++++++.++..++++||
T Consensus        79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444445555554444555555555555555555555555554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=90.07  E-value=5.6  Score=50.77  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHhcchhhhcc
Q 010595          360 AYYLECLCSVVQELQSTSLMQMT  382 (506)
Q Consensus       360 s~YMn~LlsLIetL~ksplqeLS  382 (506)
                      +.||+.|-.-...|.+.- ++|.
T Consensus      1895 ~syLeli~~y~~ll~~K~-~el~ 1916 (3245)
T 3vkg_A         1895 RHYLDFINQVVLLINEKR-DQLE 1916 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHH
Confidence            347766666555555544 4443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=89.33  E-value=3.5  Score=41.59  Aligned_cols=72  Identities=21%  Similarity=0.261  Sum_probs=35.0

Q ss_pred             cCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010595          399 AQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE  478 (506)
Q Consensus       399 aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~e  478 (506)
                      +.=...||+++|+|+...-      .+++.+-..|-+.+-++..-||.+   .+|-++.|++...+|++....|.+++.+
T Consensus       395 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (471)
T 3mq9_A          395 ARNVTHLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDAE---KAQGQKKVEELEGEITTLNHKLQDASAE  465 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhhH------HHHHHHhhhcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334567777777665444      334444344445555544444432   4444444444444444444444444443


Q ss_pred             h
Q 010595          479 S  479 (506)
Q Consensus       479 s  479 (506)
                      .
T Consensus       466 ~  466 (471)
T 3mq9_A          466 V  466 (471)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=89.19  E-value=4.3  Score=36.38  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=44.2

Q ss_pred             hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595          419 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ  487 (506)
Q Consensus       419 ~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~  487 (506)
                      +++.+-.+..+-+..+..++.+.+|+...-++|....-+...+...+.+.+.++..|+.+..+|+..+.
T Consensus        66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555566666666677766666667766666666667777777777777777777665443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.97  E-value=3.2  Score=39.63  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=18.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595          451 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV  493 (506)
Q Consensus       451 L~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV  493 (506)
                      +....+++...+.++..+.+++.++......+...+..++.++
T Consensus        92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l  134 (256)
T 3na7_A           92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM  134 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.70  E-value=9  Score=36.51  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHH
Q 010595          450 ELALKEKEVAGLKESVAKTKARL  472 (506)
Q Consensus       450 eL~qKeKEv~d~~eRv~e~k~RL  472 (506)
                      .+..+++++.+...++.+.+++|
T Consensus       119 ~ie~~~~~l~~~~~~l~~~~~~l  141 (256)
T 3na7_A          119 EIKRKSEKQEDLKKEMLELEKLA  141 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=87.69  E-value=3  Score=44.18  Aligned_cols=52  Identities=13%  Similarity=0.073  Sum_probs=16.8

Q ss_pred             EEeccEEeecchHHHH-HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHh
Q 010595          322 VSVGKYHVRASISSIL-QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ  374 (506)
Q Consensus       322 VdVnGFqVlpSqv~iV-~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~  374 (506)
                      |+-+||+++|..+..- ++=.+.+.--|-+|+.-++.|=+++=. =|.|.++|.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~c~~~~~~~G~~CPT-tC~l~D~L~   92 (464)
T 1m1j_B           40 ISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELGVLCPT-GCELQTTLL   92 (464)
T ss_dssp             -----------------------CCCCCSCEECSSTTTCEEEEC-TTHHHHHHH
T ss_pred             cCCCCcCCCCCCCcchhhccCcccCCCCCCccccCCCccCcCCC-ccHHHHHHH
Confidence            6679999999887775 444455555577777666555443322 266666664

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=85.74  E-value=9.3  Score=32.30  Aligned_cols=13  Identities=23%  Similarity=0.207  Sum_probs=4.8

Q ss_pred             HHHHHHHhhhhHH
Q 010595          471 RLSDLELESNRLE  483 (506)
Q Consensus       471 RL~~LE~ess~L~  483 (506)
                      ++..+|.+...|.
T Consensus        80 ~~~~aE~ev~~L~   92 (101)
T 3u1c_A           80 NAAKAESEVASLN   92 (101)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.56  E-value=7.4  Score=31.52  Aligned_cols=67  Identities=16%  Similarity=0.203  Sum_probs=40.4

Q ss_pred             hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595          423 HQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF  496 (506)
Q Consensus       423 ~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF  496 (506)
                      .++++.++++.....+.+..+++..-+.+.+.+.++       ..+.-|+..||.+..+....+..+..|++..
T Consensus         8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev-------~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A            8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDEL-------VALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666655555555555555544444444444       4466667777777777777777777766543

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=83.59  E-value=22  Score=31.08  Aligned_cols=37  Identities=14%  Similarity=0.127  Sum_probs=15.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595          451 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ  487 (506)
Q Consensus       451 L~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~  487 (506)
                      +.+...++.++..++.+...+|..++.....+...+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  135 (284)
T 1c1g_A           99 LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ  135 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333334444444444444444433333333

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=82.54  E-value=10  Score=40.17  Aligned_cols=40  Identities=13%  Similarity=0.141  Sum_probs=25.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595          457 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF  496 (506)
Q Consensus       457 Ev~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF  496 (506)
                      ++.++++++.+++++|..|+.+...++..+..+=..+=+.
T Consensus       117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~  156 (501)
T 1wle_A          117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ  156 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3344566777777777777777777766665554444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=82.39  E-value=3  Score=47.86  Aligned_cols=9  Identities=11%  Similarity=0.165  Sum_probs=4.0

Q ss_pred             hhHHHhhhh
Q 010595           79 CGERCFKRN   87 (506)
Q Consensus        79 C~e~C~~~i   87 (506)
                      |-.||..++
T Consensus       453 cINy~NEkL  461 (1080)
T 2dfs_A          453 CINYANEKL  461 (1080)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHhhhHHH
Confidence            444444444

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=82.14  E-value=21  Score=31.94  Aligned_cols=79  Identities=22%  Similarity=0.283  Sum_probs=50.9

Q ss_pred             hhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 010595          405 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ  484 (506)
Q Consensus       405 WL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k  484 (506)
                      -|+..|....+.-      ...+.+-..|-+.+..++.-|+++   -++.++.+++++..|..+...|.+++++..+|..
T Consensus        29 lLq~qLTqAQe~l------~~~eaQAaTCNqTV~tL~~SL~~e---kaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~   99 (121)
T 3mq7_A           29 LLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDAE---KAQGQKKVEELEGEITTLNHKLQDASAEVERLRR   99 (121)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555444322      233444456777777777666654   4455677888888888888888888888888766


Q ss_pred             HHHHhhhh
Q 010595          485 IIQATQSK  492 (506)
Q Consensus       485 ~v~~~kSK  492 (506)
                      -...+...
T Consensus       100 ~~~~~~~r  107 (121)
T 3mq7_A          100 ENQVLSVR  107 (121)
T ss_dssp             HHHHHHHH
T ss_pred             hchhhhhH
Confidence            55555443

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=82.05  E-value=2.8  Score=43.02  Aligned_cols=58  Identities=10%  Similarity=0.172  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595          439 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF  496 (506)
Q Consensus       439 ~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF  496 (506)
                      .++.+|+...+++.+.++++++++.++.++.++|.+.+.++.+|.-.+.++|.+|+=|
T Consensus         7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~   64 (403)
T 4etp_A            7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY   64 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence            3445555555566666777777777888899999999999999999999999887655

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=81.57  E-value=5.3  Score=42.39  Aligned_cols=37  Identities=8%  Similarity=0.114  Sum_probs=23.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595          460 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF  496 (506)
Q Consensus       460 d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF  496 (506)
                      ++++++.+++++|.+||.+...++..+..+=..+=+.
T Consensus        75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~  111 (485)
T 3qne_A           75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI  111 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3556667777777777777777766665555444444

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=81.33  E-value=11  Score=40.86  Aligned_cols=77  Identities=10%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             HHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 010595          366 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE  445 (506)
Q Consensus       366 LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELE  445 (506)
                      |...|++|.+.- .+| ..-=.+++.....+.      +=|+.+|....+....+.++..      .+++.+..++.+|.
T Consensus        62 ltkrINELKnqL-Edl-sKnsKdseqy~k~~~------E~Lr~rq~q~~dNdNtynE~S~------ELRRrIqyLKekVd  127 (562)
T 3ghg_A           62 FTNRINKLKNSL-FEY-QKNNKDSHSLTTNIM------EILRGDFSSANNRDNTYNRVSE------DLRSRIEVLKRKVI  127 (562)
T ss_dssp             HHHHHHHHHHHH-THH-HHHHHHHHHHHHHHH------HTTSSHHHHHHHHHHHHHHTTH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHH-HhhchhHHHHHHHHH------HHHHHHHHhhhccchhHHHHHH------HHHHHHHHHHHHHH
Confidence            344455554443 444 222334444443333      5566666666555443333331      23344444444444


Q ss_pred             HHHHHHHHHHH
Q 010595          446 SQMNELALKEK  456 (506)
Q Consensus       446 e~leeL~qKeK  456 (506)
                      .++..|+.++.
T Consensus       128 nQlsnIrvLQs  138 (562)
T 3ghg_A          128 EKVQHIQLLQK  138 (562)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44433333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.56  E-value=5.2  Score=43.24  Aligned_cols=11  Identities=27%  Similarity=0.208  Sum_probs=5.0

Q ss_pred             hhHHHHHHHHH
Q 010595          407 RNILNEISEAI  417 (506)
Q Consensus       407 ~kKLeEV~Ear  417 (506)
                      +..|+++...+
T Consensus        70 KnqLEdlsKns   80 (562)
T 3ghg_A           70 KNSLFEYQKNN   80 (562)
T ss_dssp             HHHHTHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            34455554333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	506
d1cqxa1	150	Flavohemoglobin, N-terminal domain {Alcaligenes eu	91.24
d1gvha1	146	Flavohemoglobin, N-terminal domain {Escherichia co	83.44
d1asha_	147	Ascaris hemoglobin, domain 1 {Pig roundworm (Ascar	81.5
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	81.28

>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Flavohemoglobin, N-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=91.24  E-value=1.6  Score=35.84  Aligned_cols=43  Identities=5%  Similarity=0.136  Sum_probs=32.8

Q ss_pred             HHHHHHHhhcccccccCcccchhHHH---HHHHHHHHHHHHHhcch
Q 010595          335 SILQSIISRYGDIAANCNLESNSMRA---YYLECLCSVVQELQSTS  377 (506)
Q Consensus       335 ~iV~~IFeKHpDIAsnf~lKn~~lRs---~YMn~LlsLIetL~ksp  377 (506)
                      .+-.++|+.||++-.-|...++.+++   .+|..|..+|+.|....
T Consensus        27 ~ff~rlF~~~P~~~~~F~~~~~~~~~h~~~~~~~l~~~V~~Ld~~~   72 (150)
T d1cqxa1          27 CFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIEDPN   72 (150)
T ss_dssp             HHHHHHHHHCGGGGGTSCCSCCCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCHhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccCHH
Confidence            45577899999999999877766554   57888888888775433

>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Flavohemoglobin, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.44  E-value=6  Score=32.16  Aligned_cols=90  Identities=8%  Similarity=0.119  Sum_probs=52.2

Q ss_pred             HHHHHHHhhcccccccCcccchhHH---HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhH-HhcCcchhhhhhHH
Q 010595          335 SILQSIISRYGDIAANCNLESNSMR---AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV-ESAQIDVDWLRNIL  410 (506)
Q Consensus       335 ~iV~~IFeKHpDIAsnf~lKn~~lR---s~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dL-e~aGfKVDWL~kKL  410 (506)
                      .+-.++|+.||++-.-|...++.++   ..+|..|-.+|+.|..+.  .|     ......|... ...|++-+....--
T Consensus        27 ~fy~rlF~~~P~~k~lF~~~~~~~~~h~~~~~~~l~~~v~~Ldd~~--~l-----~~~l~~Lg~~H~~~gv~~~~f~~~~   99 (146)
T d1gvha1          27 HFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLP--AL-----LPAVEKIAQKHTSFQIKPEQYNIVG   99 (146)
T ss_dssp             HHHHHHHHHCGGGGGTSCCCTTCCSHHHHHHHHHHHHHHTTGGGGG--GG-----HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHCHHHHHHhhhcchhhHHHHHHHHHHHHHHHHhccchh--hH-----HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3467789999999999987776543   368889999998887644  22     1222211111 23477776665544


Q ss_pred             HHHHHHH-HhhhhhhhHHHHHH
Q 010595          411 NEISEAI-EFSTQHQTIDAAKA  431 (506)
Q Consensus       411 eEV~Ear-e~~~~~~~leeeKd  431 (506)
                      +-+.+.. +.+.-...+++++.
T Consensus       100 ~~ll~~l~~~lg~~~e~~~AW~  121 (146)
T d1gvha1         100 EHLLATLDEMFSPGQEVLDAWG  121 (146)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHH
Confidence            4444433 22333334444444

>d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Ascaris hemoglobin, domain 1
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=81.50  E-value=3.7  Score=33.82  Aligned_cols=76  Identities=8%  Similarity=0.164  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhcccccccCcc----------cchhHH---HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHh-c
Q 010595          334 SSILQSIISRYGDIAANCNL----------ESNSMR---AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES-A  399 (506)
Q Consensus       334 v~iV~~IFeKHpDIAsnf~l----------Kn~~lR---s~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~-a  399 (506)
                      +.+..++|++|||+-.-|.-          .|+.|+   ..+|+.|-.+|..|....       .|......|..-=. .
T Consensus        28 ~~~f~~LF~~~P~~k~~F~~f~~~~~~~l~~s~~~~~h~~rv~~~l~~~V~~Ldd~~-------~l~~~l~~Lg~~H~~r  100 (147)
T d1asha_          28 IDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRE-------TFNAYTRELLDRHARD  100 (147)
T ss_dssp             HHHHHHHHHHCGGGGGGSTTTTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSHH-------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCHHHHHhccccccCCHHHhccCHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHhccc
Confidence            68999999999999998862          466666   467888888888775433       44444444444432 3


Q ss_pred             Ccchh---h--hhhHHHHHHHH
Q 010595          400 QIDVD---W--LRNILNEISEA  416 (506)
Q Consensus       400 GfKVD---W--L~kKLeEV~Ea  416 (506)
                      |+.++   |  +..-|.++.+.
T Consensus       101 ~v~v~~~~f~~~~~~l~~~l~~  122 (147)
T d1asha_         101 HVHMPPEVWTDFWKLFEEYLGK  122 (147)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHh
Confidence            55544   2  55555555443

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=81.28  E-value=7.9  Score=30.43  Aligned_cols=15  Identities=7%  Similarity=0.231  Sum_probs=9.2

Q ss_pred             HHHHhhHHhcCcchh
Q 010595          390 MAVLKDVESAQIDVD  404 (506)
Q Consensus       390 ~~~L~dLe~aGfKVD  404 (506)
                      ..+..-|..-|+.++
T Consensus        12 e~v~~~l~~R~~~~~   26 (110)
T d1seta1          12 EVFHRAIREKGVALD   26 (110)
T ss_dssp             HHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHcCCccC
Confidence            344455666777776