Citrus Sinensis ID: 010604

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500------
Protein Sequence
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSKGSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Secondary Structure (PSIPRED)
cccccccccccccHHHHcccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccHHcHHHHHHHHHHccccHHHHHHHHHHcccEEEccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccHHcHHHHHHHHHHHHcccHHHHHHHHHHccccEEccccHHHHHHHHHHHHHccccccHHHHHHHHccHHHHccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHcccEEcccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccEEEEEccccccccccccEEEEEEcccHHHcccccccccccEcccccccccccccccccccccccccccccccHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHcccccccHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHHccccHHHHHHccHHHcccHHHHcHHHHHHHHHcccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccc
Coil and Loop (DISEMBL)
msllclhsvfsspatilhshslvqtrpntprFVVLSTHSnakilktnrksrygqtlslydddseeegedddddddegkeddwladdddfaeieeydvngskyrsqkgvnkskskgsrrspvkgcgvgsfrsgrslqgAQEQLDIrnrrntiknsfddtyynskdvdqrgkvmtrNATENRYQRLSEEIELDEKWLPLLDYLstfglkesHFIQMYERhmpslqinVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISlgipnskigqiiaatpslfsySVENSLKPTVRYLVEEVGinekslgkvvqlspQVLVQRIDISWNTRCIFLskelgaprddVVKMVTkhpqllhysiddgllpriNFLRSIGMRNSDILKVLRSLTQVLSLslednlkpkYTYLINELHNEVQSLTKYPMYLslsldqrirpRHRFLVSlkkapkgpfplslfiptdecfcqkwagTTVDKYLAFRQKLLLKDFAKKYERRG
Flexible Loop (DISEMBL)
MSLLCLHSVFSSPATilhshslvqtrpNTPRFVVLSthsnakilktnrksrygqtlslydddseeegedddddddegkeddwladdddFAEIEeydvngskyrsqkgvnkskskgsrrspvkgcgvgsfrsgrslqgaqeqldirnrrntiknsfddtyynskdvdqrgkvmtrnatenryQRLSeeieldekwLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLsvgvkqrdvrRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGInekslgkvvqlspQVLVQRIDISWNTRCIFLSkelgaprdDVVKMVTKHPQLlhysiddgllpRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFakkyerrg
Low Complexity Region (SEG)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYdddseeegedddddddegkeddwladdddFAEIEEYDVNGSKYRSQKGVNKSKSKGSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Disordered region (IsUnstruct)
***LCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHS***I*********************************************************************************************************************************************SEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFA*******
Disordered Region (DISOPRED)
***L***SVFSSPATI**************************************************************EDDWLADDDDFAEIEEYD**********************************************************FDDTYYNSKDVDQRG***********************KWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLL***********
Disordered Region (DISEMBL)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLY*******************EDDWLADDDDFAEIEEYDVNGSKY*********************CGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Disordered Region (DISPRO)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSL**********************DWLADDDDFAEIEEYDV***************************************************************NSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSKGSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	506	2.2.26 [Sep-21-2011]
Q6P6Q6	409	mTERF domain-containing p	yes	no	0.492	0.608	0.255	3e-08
Q96E29	417	mTERF domain-containing p	yes	no	0.494	0.599	0.245	1e-06
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.422	0.528	0.249	3e-06
Q8R3J4	412	mTERF domain-containing p	yes	no	0.480	0.589	0.246	1e-05

>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 29/278 (10%)

Query: 231 ERLEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQ 284
           E L+ L+ +GV      K  DV  +LLR         E +++  + FL  LG+ ++++G 
Sbjct: 146 ETLQKLVQLGVDLSKIEKHPDVANLLLR------LNFEKDIKQILLFLKDLGLEDNQLGP 199

Query: 285 IIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTR 341
            +    ++FS  +EN LK  V YL +    ++  +  +V+ +P +L   V+R+D     R
Sbjct: 200 FLTKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIACMVKNAPFLLSFSVERLD----NR 253

Query: 342 CIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQ 401
             F  KEL         +V + P+LL  S++        +   +G ++++I  ++  + +
Sbjct: 254 LGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPK 313

Query: 402 VLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---P 458
           +L+ + +  L   + Y+ N ++     + K+P   +  +  +I+ RH FL  L KA   P
Sbjct: 314 MLTAN-KRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRV-FKIKERHLFLAYLGKAQYDP 371

Query: 459 KGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 493
             P  +SL  F+   DE FC++ A  +V+ +  F + L
Sbjct: 372 AKPNYVSLDKFVSFPDEVFCKEIAKASVNDFEKFLKTL 409

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Rattus norvegicus (taxid: 10116)

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)

Query: 231 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 290
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 154 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 213

Query: 291 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 347
           ++FS  +EN LK  V YL  +   ++  + ++V+ +P +L   V+R+D     R  F  K
Sbjct: 214 AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 267

Query: 348 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 407
           EL         +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + 
Sbjct: 268 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 326

Query: 408 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 460
               K K T   + +HN +      + K+P   +  L  +++ RH FL  L +A   P  
Sbjct: 327 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAK 381

Query: 461 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 493
           P  +SL     IP DE FC++ A  +V  +  F + L
Sbjct: 382 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 417

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Homo sapiens (taxid: 9606)

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 51/265 (19%)

Query: 233 LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL 292
           L +L  VG++   +   L + P IL   +E  LE+ VA+L S    N++I Q+++  P L
Sbjct: 180 LLFLKDVGIEDNQLGPFLTKNPYILGEELEA-LETRVAYLKSKKFGNAEITQMVSRAPYL 238

Query: 293 FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID-ISWNTRCIFLSKELGA 351
             +SVE  L   + +   E+G++ K    +V   P++L  +++ +  N +      E G 
Sbjct: 239 LLFSVER-LDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVC--QVEFGF 295

Query: 352 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNL 411
            R++V ++  K P++L  S                                     +  L
Sbjct: 296 ERNEVQQIAFKTPKILTAS-------------------------------------KKRL 318

Query: 412 KPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPLSL-- 466
           +  + YL N +      LT++P   +  L  RI+ RH FL+ L +A   P  P  +SL  
Sbjct: 319 RQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERHMFLIFLGRAQYDPTKPSYISLDQ 377

Query: 467 --FIPTDECFCQKWAGTTVDKYLAF 489
              +P DE FC + A  ++  +  F
Sbjct: 378 LVSLP-DEVFCTEIAKASMQDFEKF 401

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Gallus gallus (taxid: 9031)

>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mterfd1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 37/280 (13%)

Query: 233 LEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQII 286
           L+ L+ +GV      K  D   +LLR    L++  E +++  + FL  LG+ ++++G  +
Sbjct: 151 LQKLVQLGVDLSKIEKHPDAANLLLR----LDF--EKHIKQILLFLKDLGLEDNQLGPFL 204

Query: 287 AATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCI 343
               ++FS  +EN LK  V YL +    ++  + ++V+ +P +L   V+R+D     R  
Sbjct: 205 TKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIARMVKNAPFLLSFSVERLD----NRLG 258

Query: 344 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVL 403
           F  KEL         +V + P+LL  S++        +   +G ++++I  ++  + ++L
Sbjct: 259 FFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKML 318

Query: 404 SLSLEDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA-- 457
           + +     K K T + + +HN +      + K+P   +  +  +I+ RH FL  L +A  
Sbjct: 319 TAN-----KRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVF-KIKERHLFLAYLGRAQY 372

Query: 458 -PKGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 493
            P  P  +SL  F+   D+ FC++ A  +++ +  F + L
Sbjct: 373 DPAKPNYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL 412

Binds promoter DNA (By similarity). Regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	506
225460761	514	PREDICTED: uncharacterized protein LOC10	0.913	0.898	0.714	0.0
449467351	521	PREDICTED: uncharacterized protein LOC10	0.938	0.911	0.711	0.0
224056433	448	predicted protein [Populus trichocarpa]	0.859	0.970	0.701	0.0
255576320	508	conserved hypothetical protein [Ricinus	0.889	0.885	0.711	0.0
356499427	488	PREDICTED: uncharacterized protein LOC10	0.924	0.959	0.658	1e-174
15240542	496	Mitochondrial transcription termination	0.930	0.949	0.642	1e-167
297793029	493	mitochondrial transcription termination	0.926	0.951	0.652	1e-167
297737540	480	unnamed protein product [Vitis vinifera]	0.802	0.845	0.697	1e-163
357494843	528	mTERF domain-containing protein [Medicag	0.891	0.854	0.614	1e-162
115473031	503	Os07g0583200 [Oryza sativa Japonica Grou	0.758	0.763	0.641	1e-145

>gi|225460761|ref|XP_002276224.1| PREDICTED: uncharacterized protein LOC100260706 [Vitis vinifera]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/483 (71%), Positives = 397/483 (82%), Gaps = 21/483 (4%)

Query: 29  TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKED-DWLADDD 87
           T  F VLSTHSN +ILK+NR+SRYGQ LS YD D           D+ G ED DW  DD+
Sbjct: 46  TSGFTVLSTHSNPRILKSNRRSRYGQVLSPYDTD-----------DNAGDEDGDWFFDDE 94

Query: 88  DFAEIEEYDVNGSKYRSQKGVNKSKSKGSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNR 147
           D +E EE+D +  K+ SQKG N ++ +GSRR   +   + S +S  S   ++ +LD++N 
Sbjct: 95  D-SETEEFDADRKKFNSQKG-NDTR-QGSRRQLEEDQSIRSLKSEGSFNISKGELDVKNG 151

Query: 148 RNTIKNSFDDTYYNSKDVDQR-----GKVMTRNATENRYQRLSEEIELDEKWLPLLDYLS 202
           +NTI +S+  T+  S+D D       GK+  R +TEN+Y RLSEEI+LDEKW PLLDYLS
Sbjct: 152 KNTIGSSYH-TFNKSEDYDSSEMHGIGKLKPRKSTENKYCRLSEEIDLDEKWFPLLDYLS 210

Query: 203 TFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVE 262
           TFGLKESHFIQMYERHMPSLQIN CSA+ERLEYL SVGVK RD++RI+LRQPQILEYTVE
Sbjct: 211 TFGLKESHFIQMYERHMPSLQINACSAQERLEYLSSVGVKHRDIKRIILRQPQILEYTVE 270

Query: 263 NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKV 322
           NNL+SHVAFL+ LGIP+S+IG +IAA PSLFSYSVENSLKPTVRYL+EEVGI +  LGKV
Sbjct: 271 NNLKSHVAFLVGLGIPDSRIGHVIAAAPSLFSYSVENSLKPTVRYLIEEVGIKKNDLGKV 330

Query: 323 VQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL 382
           VQLSPQ+LVQRID SWNTR  FLS+ELGAPRD +VKMVTKHPQLLHYSI+DG LPRINFL
Sbjct: 331 VQLSPQILVQRIDNSWNTRYSFLSRELGAPRDSIVKMVTKHPQLLHYSIEDGFLPRINFL 390

Query: 383 RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQ 442
           RSIGMRNSDILKVL +LTQVLSLSLEDNLKPKY YL+NEL NEV SLTKYPMYLSLSLDQ
Sbjct: 391 RSIGMRNSDILKVLTNLTQVLSLSLEDNLKPKYMYLVNELRNEVHSLTKYPMYLSLSLDQ 450

Query: 443 RIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKY 502
           RIRPRHRFLV LKKAPKGPFPLS F+PTDECFCQ+WAGT++D YLAFRQ+LLLKDFAKKY
Sbjct: 451 RIRPRHRFLVYLKKAPKGPFPLSSFVPTDECFCQQWAGTSLDSYLAFRQRLLLKDFAKKY 510

Query: 503 ERR 505
           E+R
Sbjct: 511 EKR 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467351|ref|XP_004151387.1| PREDICTED: uncharacterized protein LOC101207692 [Cucumis sativus] gi|449517569|ref|XP_004165818.1| PREDICTED: uncharacterized protein LOC101227066 [Cucumis sativus]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/481 (71%), Positives = 401/481 (83%), Gaps = 6/481 (1%)

Query: 28  NTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDD 87
           N PRFVV STHS+A ILK  R+SR+G+TLS +D D  E+G D D+   +G +DD   D+ 
Sbjct: 43  NVPRFVVRSTHSSAAILKPKRRSRFGRTLSPFDSD--EDGYDVDEFSSDGDDDDAWPDNG 100

Query: 88  DFAEIEEYDVNGSKYRSQ-KGVNKSKSKGSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRN 146
           DF+++E YD    + + Q K  N +  + + R P +  G+ S   G+S +     LD ++
Sbjct: 101 DFSDVE-YDAKRKRAKLQSKTRNNNSQRDNVRHPRESRGIKSSNDGKSFKVKSNHLDFQD 159

Query: 147 RRN-TIKNSFD-DTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTF 204
             N T+K+ F+ D    S +  ++GKVMT+ + E R+ RL+EEI+LDEKW PLL+YL+TF
Sbjct: 160 ITNDTVKHDFNIDEEVCSTNTGRKGKVMTKKSMEIRFPRLAEEIDLDEKWFPLLNYLTTF 219

Query: 205 GLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN 264
           GLKESHF+QMYERHMPSLQINV SA+ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN
Sbjct: 220 GLKESHFLQMYERHMPSLQINVYSAQERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN 279

Query: 265 LESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQ 324
           L+SHVAFL+SLGIP S++GQIIAA PSLFSYSVENSLKPTVRYLVEEVGI EK LGKVVQ
Sbjct: 280 LKSHVAFLLSLGIPTSRVGQIIAAAPSLFSYSVENSLKPTVRYLVEEVGIQEKDLGKVVQ 339

Query: 325 LSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS 384
           LSPQ+LVQRID SWNTR +FLSKE+GAPRD+VVKMVTKHPQLLHYSI+DGLLPRINFLRS
Sbjct: 340 LSPQILVQRIDTSWNTRYMFLSKEIGAPRDNVVKMVTKHPQLLHYSINDGLLPRINFLRS 399

Query: 385 IGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRI 444
           IGMRNS+ILKVL SLTQV SLSLEDNLKPKY YLINEL NEV+SLTKYPMYLSLSLDQRI
Sbjct: 400 IGMRNSEILKVLTSLTQVFSLSLEDNLKPKYMYLINELRNEVKSLTKYPMYLSLSLDQRI 459

Query: 445 RPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYER 504
           RPRHRFLVSLKKAPKGPFPLS F+PTDECFC++WA T++DKYL FR++LLLK+FA+KYER
Sbjct: 460 RPRHRFLVSLKKAPKGPFPLSSFVPTDECFCEQWAETSLDKYLEFRKRLLLKEFAEKYER 519

Query: 505 R 505
           R
Sbjct: 520 R 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056433|ref|XP_002298854.1| predicted protein [Populus trichocarpa] gi|222846112|gb|EEE83659.1| predicted protein [Populus trichocarpa]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/482 (70%), Positives = 382/482 (79%), Gaps = 47/482 (9%)

Query: 34  VLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIE 93
           VLSTHSNAKIL   RKSRYG T SLYD D                 DDWL DD+ FAE  
Sbjct: 5   VLSTHSNAKILNPKRKSRYGHTFSLYDTDI--------------GLDDWLLDDE-FAEPV 49

Query: 94  EYDVNGSKYRSQKGVNKSKSKGSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKN 153
           +++V+G     +K VN  K   +R                  +G Q   + R  +NT + 
Sbjct: 50  DFEVDG-----KKRVNSQKKTSTR------------------EGGQRLFNSRTSKNTREK 86

Query: 154 SFDDTYYNSK---------DVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTF 204
           S    +Y +K         D++ +GK+MT  +TE+RY +LSEEI+LDEKWLPLLDYLSTF
Sbjct: 87  SMVGNFYGTKTRTKEADSSDINGQGKLMTGKSTEDRYPKLSEEIDLDEKWLPLLDYLSTF 146

Query: 205 GLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN 264
           GLKESHFIQ+YERHMPSLQINVCSARERLEYL S+GVK RD++RILLRQPQILEYTVE+N
Sbjct: 147 GLKESHFIQIYERHMPSLQINVCSARERLEYLQSIGVKHRDIKRILLRQPQILEYTVESN 206

Query: 265 LESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQ 324
           L+SH AFLI LGIPNS+IGQIIAA PSLFSYSVENSLKPTVRY+VEEVGI+EK++GKVVQ
Sbjct: 207 LKSHTAFLIGLGIPNSRIGQIIAAAPSLFSYSVENSLKPTVRYMVEEVGIDEKNIGKVVQ 266

Query: 325 LSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS 384
           LSPQ+LVQRID+SWNTR +FLS+ELGA RD VVKMVTKHPQLLHYSIDDG +PRINFLRS
Sbjct: 267 LSPQILVQRIDVSWNTRYLFLSRELGASRDSVVKMVTKHPQLLHYSIDDGFIPRINFLRS 326

Query: 385 IGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRI 444
           IGM N DILKVL SLTQVLSLSLEDNLKPKY YLINEL NEVQSLTKYP YLSLSLDQRI
Sbjct: 327 IGMHNGDILKVLTSLTQVLSLSLEDNLKPKYKYLINELRNEVQSLTKYPTYLSLSLDQRI 386

Query: 445 RPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYER 504
           RPRHRFLV+LKKAPKGPFPLS F+PTDE FCQ+WAGT+VDKYLAFRQ+LLLK+FAKKYE+
Sbjct: 387 RPRHRFLVALKKAPKGPFPLSSFVPTDESFCQQWAGTSVDKYLAFRQQLLLKEFAKKYEK 446

Query: 505 RG 506
           RG
Sbjct: 447 RG 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576320|ref|XP_002529053.1| conserved hypothetical protein [Ricinus communis] gi|223531533|gb|EEF33364.1| conserved hypothetical protein [Ricinus communis]

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/485 (71%), Positives = 400/485 (82%), Gaps = 35/485 (7%)

Query: 31  RFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFA 90
           + VVLSTHSNAKILK+NRKSR+GQTLS Y  D +EE E+DDDDD++  +  W +DD+ FA
Sbjct: 50  KLVVLSTHSNAKILKSNRKSRFGQTLSPYASDDDEEEEEDDDDDNDSDKS-WFSDDE-FA 107

Query: 91  EIEEYDVNGSKYRSQKGVNKSKSKGSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNT 150
           E  ++ VNG +++ QK +++                         QG + QLD +  RNT
Sbjct: 108 EPVDFKVNGKRFKLQKKISER------------------------QGGRRQLDAKIGRNT 143

Query: 151 IKNSFDDTYYNSKD---------VDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYL 201
            +      +Y++K+         VD++ ++M++  TENRY++LSEEI+LD +WLPLLDYL
Sbjct: 144 QEKRIIGNFYHTKNKTKQPDSMHVDRKERLMSKEPTENRYEKLSEEIDLDNRWLPLLDYL 203

Query: 202 STFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTV 261
            TFGLKES FIQMYERHMPSLQINV SA+ERLEYLLSVGVK RD+RRILLRQPQILEYTV
Sbjct: 204 CTFGLKESDFIQMYERHMPSLQINVSSAQERLEYLLSVGVKHRDIRRILLRQPQILEYTV 263

Query: 262 ENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGK 321
           +NNL+SHVAFL SLGIPNS+IGQIIA TPSLFSYSV+NSLKPTVRYLVEE+GINEK++GK
Sbjct: 264 DNNLKSHVAFLSSLGIPNSRIGQIIAVTPSLFSYSVQNSLKPTVRYLVEELGINEKNIGK 323

Query: 322 VVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINF 381
           VVQLSPQ+LVQRIDISWNTR IFLSKELGA ++ VVKMVTKHPQLLHYSIDDG +PRINF
Sbjct: 324 VVQLSPQILVQRIDISWNTRYIFLSKELGASKESVVKMVTKHPQLLHYSIDDGFVPRINF 383

Query: 382 LRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLD 441
           LRSIGMRNSDILKVL SLTQVLSLSLEDNLKPKY YLINEL NEVQSLTKYPMYLSLSLD
Sbjct: 384 LRSIGMRNSDILKVLTSLTQVLSLSLEDNLKPKYKYLINELRNEVQSLTKYPMYLSLSLD 443

Query: 442 QRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKK 501
           QRIRPRH+FLV+LKKAPKGPFPLS F+PTDECFCQ+WAGT+V+KYLAFRQ+LLL  FAKK
Sbjct: 444 QRIRPRHKFLVALKKAPKGPFPLSSFVPTDECFCQQWAGTSVEKYLAFRQQLLLNKFAKK 503

Query: 502 YERRG 506
           YER G
Sbjct: 504 YERLG 508

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499427|ref|XP_003518542.1| PREDICTED: uncharacterized protein LOC100809638 [Glycine max]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 329/500 (65%), Positives = 386/500 (77%), Gaps = 32/500 (6%)

Query: 10  FSSPATILHSHSLVQTR----PNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEE 65
           FS+P++      +++ R     +    V L+ HSN +ILK+NRKS+YG+ L  YD D E 
Sbjct: 16  FSTPSSFRSQFWILERRRLGSASLKNLVKLAAHSNPRILKSNRKSKYGEALLFYDSDEEM 75

Query: 66  EGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSKGSRRSPVKGCG 125
           + +  DDD+D+         D++F+E    DVN +K    K      +KG  R      G
Sbjct: 76  DDDVSDDDEDDDW-----LSDEEFSEPANLDVNNNKRFKSKT-----TKGKDRQQEWEWG 125

Query: 126 VGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLS 185
           + SF + +S++  + +     +RN                 + GK  +RN  + +Y RLS
Sbjct: 126 LRSFDNKQSIRLPRSERVASLQRN-----------------ESGK-HSRNVKDKKYPRLS 167

Query: 186 EEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRD 245
           EEI LD KWLPLLDYLSTFG+KESHF+QMYER M SLQINVCSA+ERLEYLLSVGVKQ D
Sbjct: 168 EEIPLDVKWLPLLDYLSTFGMKESHFVQMYERRMQSLQINVCSAQERLEYLLSVGVKQSD 227

Query: 246 VRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTV 305
           VRRILLRQPQILEYTVENNL+S VAFL  LGIPNS+IGQIIAA PSLFSYSVENSLKPTV
Sbjct: 228 VRRILLRQPQILEYTVENNLKSRVAFLRGLGIPNSRIGQIIAAAPSLFSYSVENSLKPTV 287

Query: 306 RYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQ 365
           RYL+EEVGI EK LGKV+QLSPQ+LVQRIDISWNTR +FL+KELGAPRD +VKMVTKHPQ
Sbjct: 288 RYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRSMFLTKELGAPRDSIVKMVTKHPQ 347

Query: 366 LLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNE 425
           LLHYSIDDGLLPRINFLRSIGM+NSDI+KVL SLTQVLSLSLE+NLKPKY YL+NEL+NE
Sbjct: 348 LLHYSIDDGLLPRINFLRSIGMKNSDIVKVLTSLTQVLSLSLEENLKPKYLYLVNELNNE 407

Query: 426 VQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDK 485
           VQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPL   +PTDECFCQ+WAGT++D+
Sbjct: 408 VQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSLDR 467

Query: 486 YLAFRQKLLLKDFAKKYERR 505
           YLAFRQ+LLLK FA+KYER+
Sbjct: 468 YLAFRQRLLLKKFAEKYERK 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240542|ref|NP_200369.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|9758592|dbj|BAB09225.1| unnamed protein product [Arabidopsis thaliana] gi|17065230|gb|AAL32769.1| Unknown protein [Arabidopsis thaliana] gi|23197866|gb|AAN15460.1| Unknown protein [Arabidopsis thaliana] gi|332009269|gb|AED96652.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 325/506 (64%), Positives = 379/506 (74%), Gaps = 35/506 (6%)

Query: 3   LLCLHSVFSSPATILHSHSLVQTRPN--TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYD 60
           L  L S   SPAT          RP+  T  FVV   HSN KI+   +KSRYGQTLS YD
Sbjct: 24  LFVLGSDKCSPAT---------RRPSRKTRGFVVTYAHSNPKIINPKKKSRYGQTLSPYD 74

Query: 61  DDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSKGSRRSP 120
            D +++ +DDDDDDD          +DDFAE+ EY+    K   Q    KS  KG  +  
Sbjct: 75  SDEDDDDDDDDDDDDW-------LLNDDFAEVTEYEKKKPKSHKQTIAKKSVKKGIVKP- 126

Query: 121 VKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENR 180
                          +  ++ LD+        N+  +    S  +D RGK+ +R   E  
Sbjct: 127 ------------EESETDEDDLDL----GISPNATSEKKKESWRLDGRGKMSSRKYVEKL 170

Query: 181 YQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVG 240
           Y RL+EEI++D K +PLLDYLSTFGLKESHF+QMYERHMPSLQINV SA+ERL+YLLSVG
Sbjct: 171 YPRLAEEIDIDPKCVPLLDYLSTFGLKESHFVQMYERHMPSLQINVFSAQERLDYLLSVG 230

Query: 241 VKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENS 300
           VK RD++R+LLRQPQIL+YTVENNL++H++FL+ LGIPNSKIGQI+AATPSLFSYSVENS
Sbjct: 231 VKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENS 290

Query: 301 LKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMV 360
           L+PT+RYL+EEVGI E  +GKVVQLSPQ+LVQR+DI+WNTR +FLSKELGAPRD VVKMV
Sbjct: 291 LRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMV 350

Query: 361 TKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420
            KHPQLLHYSIDDG LPRINFLRSIGM NSDILKVL SLTQVLSLSLEDNLKPKY YL+N
Sbjct: 351 KKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVN 410

Query: 421 ELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAG 480
           EL+NEV  LTKYPMYLSLSLDQRIRPRHRFLV LKK  KGPFPLS  +P DE FCQ+WAG
Sbjct: 411 ELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVRKGPFPLSSLVPNDESFCQQWAG 470

Query: 481 TTVDKYLAFRQKLLLKDFAKKYERRG 506
           T+VD YLAFRQ+LLLK+FA KY++RG
Sbjct: 471 TSVDTYLAFRQRLLLKEFANKYDKRG 496

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793029|ref|XP_002864399.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297310234|gb|EFH40658.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 328/503 (65%), Positives = 379/503 (75%), Gaps = 34/503 (6%)

Query: 3   LLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDD 62
           L  L S   SPAT   S         T  FVV   HSN KI+   +KSRYGQTLS YD D
Sbjct: 24  LFVLGSDKCSPATRRRSR-------KTRGFVVTYAHSNPKIINPKKKSRYGQTLSPYDSD 76

Query: 63  SEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSKGSRRSPVK 122
            +EE +DD+DDD           +DDFAE+ EY+         K   KS+ +   +  VK
Sbjct: 77  EDEELDDDEDDDW--------LLNDDFAEVTEYE---------KKKPKSQKQTMAKKGVK 119

Query: 123 GCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQ 182
              V ++      +  ++ LDI   RN            S  +D RGKV +R   E  Y 
Sbjct: 120 KGIVKNWEKPEESETDEDDLDIGISRNR----------ESWRLDGRGKVSSRKYVEKLYP 169

Query: 183 RLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVK 242
           RLSEEI++D KW+PLLDYLSTFGLKESHF+QMYERHMPSLQINV SA+ERL+YLLSVGVK
Sbjct: 170 RLSEEIDIDPKWVPLLDYLSTFGLKESHFVQMYERHMPSLQINVLSAQERLDYLLSVGVK 229

Query: 243 QRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLK 302
            RD++R+LLRQPQIL+YTVENNL++H++FL+ LGIPNSKIGQI+AATPSLFSYSVENSL+
Sbjct: 230 HRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLR 289

Query: 303 PTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTK 362
           PT+RYL+EEVGI E  +GKVVQLSPQ+LVQR+DI+WNTR +FLSKELGAPRD VVKMV K
Sbjct: 290 PTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKK 349

Query: 363 HPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 422
           HPQLLHYSIDDG LPRINFLRSIGM NSDILKVL SLTQVLSLSLEDNLKPKY YL+NEL
Sbjct: 350 HPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNEL 409

Query: 423 HNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTT 482
           +NEV  LTKYPMYLSLSLDQRIRPRHRFLV LKK  KGPFPLS  +P DE FCQ+WAGT+
Sbjct: 410 NNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVRKGPFPLSSLVPNDESFCQQWAGTS 469

Query: 483 VDKYLAFRQKLLLKDFAKKYERR 505
           VD YLAFRQ+LLLK+FA KY++R
Sbjct: 470 VDTYLAFRQRLLLKEFANKYDKR 492

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737540|emb|CBI26741.3| unnamed protein product [Vitis vinifera]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 298/427 (69%), Positives = 344/427 (80%), Gaps = 21/427 (4%)

Query: 29  TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKED-DWLADDD 87
           T  F VLSTHSN +ILK+NR+SRYGQ LS YD D           D+ G ED DW  DD+
Sbjct: 46  TSGFTVLSTHSNPRILKSNRRSRYGQVLSPYDTD-----------DNAGDEDGDWFFDDE 94

Query: 88  DFAEIEEYDVNGSKYRSQKGVNKSKSKGSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNR 147
           D +E EE+D +  K+ SQKG N ++ +GSRR   +   + S +S  S   ++ +LD++N 
Sbjct: 95  D-SETEEFDADRKKFNSQKG-NDTR-QGSRRQLEEDQSIRSLKSEGSFNISKGELDVKNG 151

Query: 148 RNTIKNSFDDTYYNSKDVDQR-----GKVMTRNATENRYQRLSEEIELDEKWLPLLDYLS 202
           +NTI +S+  T+  S+D D       GK+  R +TEN+Y RLSEEI+LDEKW PLLDYLS
Sbjct: 152 KNTIGSSYH-TFNKSEDYDSSEMHGIGKLKPRKSTENKYCRLSEEIDLDEKWFPLLDYLS 210

Query: 203 TFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVE 262
           TFGLKESHFIQMYERHMPSLQIN CSA+ERLEYL SVGVK RD++RI+LRQPQILEYTVE
Sbjct: 211 TFGLKESHFIQMYERHMPSLQINACSAQERLEYLSSVGVKHRDIKRIILRQPQILEYTVE 270

Query: 263 NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKV 322
           NNL+SHVAFL+ LGIP+S+IG +IAA PSLFSYSVENSLKPTVRYL+EEVGI +  LGKV
Sbjct: 271 NNLKSHVAFLVGLGIPDSRIGHVIAAAPSLFSYSVENSLKPTVRYLIEEVGIKKNDLGKV 330

Query: 323 VQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL 382
           VQLSPQ+LVQRID SWNTR  FLS+ELGAPRD +VKMVTKHPQLLHYSI+DG LPRINFL
Sbjct: 331 VQLSPQILVQRIDNSWNTRYSFLSRELGAPRDSIVKMVTKHPQLLHYSIEDGFLPRINFL 390

Query: 383 RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQ 442
           RSIGMRNSDILKVL +LTQVLSLSLEDNLKPKY YL+NEL NEV SLTKYPMYLSLSLDQ
Sbjct: 391 RSIGMRNSDILKVLTNLTQVLSLSLEDNLKPKYMYLVNELRNEVHSLTKYPMYLSLSLDQ 450

Query: 443 RIRPRHR 449
           RIRPRHR
Sbjct: 451 RIRPRHR 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494843|ref|XP_003617710.1| mTERF domain-containing protein [Medicago truncatula] gi|355519045|gb|AET00669.1| mTERF domain-containing protein [Medicago truncatula]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 314/511 (61%), Positives = 375/511 (73%), Gaps = 60/511 (11%)

Query: 31  RFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDD--- 87
           +F VLS HSN KILKTNRKS YG+ LS YD D E E  D +DD+DE +++D   DDD   
Sbjct: 41  KFTVLSAHSNPKILKTNRKSTYGKFLSPYDSDDEIEEMDFEDDEDEDEDEDEDDDDDDDD 100

Query: 88  --------DFAEIEEYDVNGSKYRSQKGVNKSKSKGSRRSPVKGCGVGSFRSGRSLQGAQ 139
                    FAE  + +    + +S+   ++ + K   +      GV S  +G+S +  +
Sbjct: 101 DDEDDDDDGFAEPTDLNAKDKRLKSKTVPDRQQEKEKEK------GVRSLNNGQSKRLPK 154

Query: 140 EQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLD 199
            Q     + N           NS           RN+ E +Y  LSEEI LDEKWLPLLD
Sbjct: 155 SQRIASLQEN-----------NSAK-------FRRNSMEKKYPELSEEILLDEKWLPLLD 196

Query: 200 YLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEY 259
           YLSTFG+KES FIQ+YERHM S QINVCSA+ER++YL+S+GVK +D+RRILLRQPQILEY
Sbjct: 197 YLSTFGIKESQFIQIYERHMSSFQINVCSAQERIDYLMSLGVKHKDIRRILLRQPQILEY 256

Query: 260 TVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSL 319
           TVENNL++HVAFL+ LG+P++KIGQIIA+TPSLFSYSVE SLKPTVRYL+EEVGI EK L
Sbjct: 257 TVENNLKTHVAFLMGLGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEEVGIKEKDL 316

Query: 320 GKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRI 379
           GKV+QLSPQ+LVQRIDISWNTR +FL+KEL AP++ +VKMVTKHPQLLHYSIDDGLLPRI
Sbjct: 317 GKVIQLSPQILVQRIDISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSIDDGLLPRI 376

Query: 380 NFLRSIGMRNSDILKVLRSLTQ-------------------------VLSLSLEDNLKPK 414
           NFLRSIGM+N+DILK+L SLTQ                         VLSLSLE NLKPK
Sbjct: 377 NFLRSIGMKNADILKILTSLTQVIFAFIFVILFSLCTKGTRKRKRCYVLSLSLEANLKPK 436

Query: 415 YTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECF 474
           Y YL+NELHNEVQ+LTKYPMYLSLSLDQRIRPRH+FLVSLKKAPKGPFPL   +PTDE F
Sbjct: 437 YLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLVPTDESF 496

Query: 475 CQKWAGTTVDKYLAFRQKLLLKDFAKKYERR 505
           CQ+WAGTT+D+Y AFRQ+LLLK  A+KY+R+
Sbjct: 497 CQRWAGTTLDEYAAFRQRLLLKKLAEKYDRK 527

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115473031|ref|NP_001060114.1| Os07g0583200 [Oryza sativa Japonica Group] gi|27817836|dbj|BAC55604.1| unknown protein [Oryza sativa Japonica Group] gi|113611650|dbj|BAF22028.1| Os07g0583200 [Oryza sativa Japonica Group] gi|215701195|dbj|BAG92619.1| unnamed protein product [Oryza sativa Japonica Group] gi|222637347|gb|EEE67479.1| hypothetical protein OsJ_24896 [Oryza sativa Japonica Group]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/396 (64%), Positives = 320/396 (80%), Gaps = 12/396 (3%)

Query: 118 RSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSK--------DVDQRG 169
           R+P+K  G       ++ +G Q +   R+R +T K   D  +  SK        D+D   
Sbjct: 106 RAPIKKPGREKPALKQNWEGRQPK--TRDRCDTSKK-VDALHAKSKASRSTGLVDIDNEV 162

Query: 170 KVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSA 229
           ++   + + + +Q+L EE + D+KWLPL+DYL TFGLKESHF  MYERHM   QI+  SA
Sbjct: 163 ELKNESISRSLFQKLQEEYDFDDKWLPLIDYLCTFGLKESHFTNMYERHMACFQISQASA 222

Query: 230 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 289
            ERLE+LLSVGVK +D++R+L+RQPQILEYT+ +NL+SHVAFL+ +G+P+++IGQII+A 
Sbjct: 223 EERLEFLLSVGVKSKDMKRMLVRQPQILEYTL-SNLKSHVAFLVGIGVPSARIGQIISAA 281

Query: 290 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 349
           PS FSYSVE SLKPT+RYL+EEVGI E  +GKVVQLSPQ+LVQRID +W +R +FLSKEL
Sbjct: 282 PSFFSYSVEQSLKPTIRYLIEEVGIEESDVGKVVQLSPQILVQRIDSAWKSRFLFLSKEL 341

Query: 350 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED 409
           GAP+D++VKMVTKHPQLLHYSI+DG+LPRINFLRSIGMR++D+LKVL SLTQVLSLSLE+
Sbjct: 342 GAPKDNIVKMVTKHPQLLHYSIEDGILPRINFLRSIGMRDTDVLKVLTSLTQVLSLSLEE 401

Query: 410 NLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIP 469
           NLKPKY YL+N+L N+VQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLS F+P
Sbjct: 402 NLKPKYLYLVNDLKNDVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSSFVP 461

Query: 470 TDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERR 505
           TDE FC++WAGT+++KY  FRQ +LLK F++K  R+
Sbjct: 462 TDERFCKRWAGTSLEKYHTFRQSMLLKGFSEKTGRK 497

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	506
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.699	0.713	0.771	2.2e-146
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.424	0.759	0.282	3.6e-23
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.409	0.683	0.279	6e-22
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.444	0.380	0.280	9.7e-22
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.616	0.576	0.254	2.8e-21
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.464	0.857	0.299	2.1e-20
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.452	0.687	0.269	3e-19
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.535	0.549	0.257	3.3e-18
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.480	0.479	0.262	7.3e-18
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.492	0.388	0.277	2.3e-17

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 1430 (508.4 bits), Expect = 2.2e-146, P = 2.2e-146
 Identities = 273/354 (77%), Positives = 312/354 (88%)

Query:   153 NSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFI 212
             N+  +    S  +D RGK+ +R   E  Y RL+EEI++D K +PLLDYLSTFGLKESHF+
Sbjct:   143 NATSEKKKESWRLDGRGKMSSRKYVEKLYPRLAEEIDIDPKCVPLLDYLSTFGLKESHFV 202

Query:   213 QMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFL 272
             QMYERHMPSLQINV SA+ERL+YLLSVGVK RD++R+LLRQPQIL+YTVENNL++H++FL
Sbjct:   203 QMYERHMPSLQINVFSAQERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFL 262

Query:   273 ISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQ 332
             + LGIPNSKIGQI+AATPSLFSYSVENSL+PT+RYL+EEVGI E  +GKVVQLSPQ+LVQ
Sbjct:   263 MGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQ 322

Query:   333 RIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDI 392
             R+DI+WNTR +FLSKELGAPRD VVKMV KHPQLLHYSIDDG LPRINFLRSIGM NSDI
Sbjct:   323 RLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDI 382

Query:   393 LKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLV 452
             LKVL SLTQVLSLSLEDNLKPKY YL+NEL+NEV  LTKYPMYLSLSLDQRIRPRHRFLV
Sbjct:   383 LKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLV 442

Query:   453 SLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG 506
              LKK  KGPFPLS  +P DE FCQ+WAGT+VD YLAFRQ+LLLK+FA KY++RG
Sbjct:   443 ELKKVRKGPFPLSSLVPNDESFCQQWAGTSVDTYLAFRQRLLLKEFANKYDKRG 496

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 3.6e-23, P = 3.6e-23
 Identities = 63/223 (28%), Positives = 119/223 (53%)

Query:   230 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 289
             RE+L YL  + V   D  + L   P +    + +++ S    L S G+    +G+I+   
Sbjct:    33 REKLIYLQDLNV---DPHKALRVNPSLRSAPI-SSVVSVETLLSSTGLSRPAVGRILDMF 88

Query:   290 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 349
             P L +   E+ + P +R+L  E+ I+E+ + K +   P++L+  +D        FL K L
Sbjct:    89 PDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFL-KTL 147

Query:   350 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS-IGMRNSDILKVLRSLTQVLSLSLE 408
             G    D +   +++  LL  +++  L+P+I +L   +G    ++ K++     +L+ S++
Sbjct:   148 GFVGRDTI--TSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVD 205

Query:   409 DNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 451
             +NL PK  + I E+  +V+ L ++P Y S SL+++I+PRHR L
Sbjct:   206 NNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLL 248

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 60/215 (27%), Positives = 120/215 (55%)

Query:   263 NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKV 322
             ++++S + FL S GI  + + +I+   P + +  V   L P   +L  ++ + E +  +V
Sbjct:    85 DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRV 144

Query:   323 VQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL 382
             ++  P++L+  ++        +L + LG    D+  +  + P LL  S++  L+P++ FL
Sbjct:   145 IKKCPRLLISSVEDQLKPALFYLQR-LGLK--DLEALAYQDPILLVSSVEHTLIPKLRFL 201

Query:   383 RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQ 442
              SIG    + + ++     + + S+E+N KPK  Y ++E+  ++++L ++P Y + SL++
Sbjct:   202 ESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEK 261

Query:   443 RIRPRHRFLVSLKKAPKGPFPLSLFIP-TDECFCQ 476
             RI+PRH  L S+++  +   PLSL +  TDE F Q
Sbjct:   262 RIKPRH--LESMERGLE--LPLSLMLKSTDEEFEQ 292

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 9.7e-22, P = 9.7e-22
 Identities = 65/232 (28%), Positives = 124/232 (53%)

Query:   220 PSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN 279
             PS+Q N         +  S  V + D+   + R P +L  +  +N+E  V     LG+ +
Sbjct:   330 PSIQENYSHIGS---FFYSESVLKMDIDHAIRRWPLLLGCSA-SNMEMMVKEFDKLGVRD 385

Query:   280 SKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWN 339
              ++G++I   P L     +  LK  V +L E++G  ++ +G+++   P++    I+ +  
Sbjct:   386 KRMGKVIPKMPQLLLCKPQEFLK-VVCFL-EDLGFQKEIVGQILCRCPEIFGCSIEKTLQ 443

Query:   340 TRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSL 399
              + IFL++  G       +++ K+P+ L Y  D  +LPR+ +L  IG+   +I  ++R  
Sbjct:   444 KKLIFLTR-FGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKF 502

Query:   400 TQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 451
             + +L  S++  L+PK+ +L+N +   V+ + +YP Y S SL++RI+PR R L
Sbjct:   503 SPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVL 554

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 83/326 (25%), Positives = 158/326 (48%)

Query:   165 VDQRGKVMTRNAT--E--NRY-QRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHM 219
             +D  GK+  R +T  E   RY Q L   + +D    P++ YL    +K S   ++ ER+ 
Sbjct:   183 LDYLGKLGVRKSTFTEFLRRYPQVLHSSVVID--LAPVVKYLQGLDIKPSDVPRVLERYP 240

Query:   220 PSLQINVCSARER-LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIP 278
               L   +       + YL+ +GV +R++  IL R P+IL   V   ++  V +L  LGIP
Sbjct:   241 EVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIP 300

Query:   279 NSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISW 338
                  ++I   P +  + +++++KP V+ L ++  + E SL  ++   P+++   +    
Sbjct:   301 RLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSIIAQYPEIIGIDLKPKL 359

Query:   339 NTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRS 398
             +T+   L   +    +D+  ++ + PQ +  S +  +L  I+FL   G       +++  
Sbjct:   360 DTQRKLLCSAIHLNPEDLGSLIERMPQFVSLS-ESPMLKHIDFLTKCGFSIDQTREMVIG 418

Query:   399 LTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP 458
               QVL+L+L   +K  + Y   E+   +Q L  +P + +  L+  ++PRH+ ++  KK  
Sbjct:   419 CPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKII--KKGI 475

Query:   459 KGPFPLSLFIPTDECFCQKWAGTTVD 484
             K      L   +DE F Q+ +  T+D
Sbjct:   476 KCSLAWMLNC-SDEKFEQRMSYDTID 500

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 76/254 (29%), Positives = 129/254 (50%)

Query:   228 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIA 287
             S RE L +L S+G+  ++ R      P   + +V   + S V  L S GI +    +++ 
Sbjct:    35 SHRENLRHLSSLGIVPQNPRLA----PPANDLSV---ILSAVNLLKSKGISDEDFPRLVF 87

Query:   288 ATPSLFSYSVENS-LKPTVRYLVEEVGIN-EKSLGKVVQLSPQVLVQRIDISWNTRCIFL 345
               P LFS + + S L P   +L  E+G + E+S G +V   P +L   ++       ++L
Sbjct:    88 LCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNC-PNILFSDVEYCLRPTLVYL 146

Query:   346 SKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSL 405
              KELG    +       H  +L+  ++  L  ++ FL+SIG  + +  +V   +  +   
Sbjct:   147 -KELGVRNLNRASKTNAH--VLNTRVEK-LRAKMRFLKSIGFEHEEAARVCGRIPAIFGY 202

Query:   406 SLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLS 465
             S+EDNL+PK+ +L+ ++  E++ L K+P Y + SL +RIRPRH  L   KK  +    LS
Sbjct:   203 SVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLK--KKNVR--VSLS 258

Query:   466 -LFIPTDECFCQKW 478
              + +  D+ F  KW
Sbjct:   259 RMLMWGDQKFYSKW 272

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 67/249 (26%), Positives = 125/249 (50%)

Query:   228 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS--LGIPNSKIGQI 285
             S  E+L YL S+G+   D   ++ R P +L  T  + +ES V ++ +  +        ++
Sbjct:    72 SIHEKLIYLDSLGI---DFLTLINRHPPLLS-TALSAVESVVDYMTTPPINFTLQDFRRL 127

Query:   286 IAATPSLFSYSVENSLKPTVRYLVEEVGINEK-SLGKVVQLSPQVLVQRIDISWNTRCIF 344
             ++  P L +  + +   P + +L+ EVG++    L + ++  P++L   +D        F
Sbjct:   128 VSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYF 187

Query:   345 LSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLS 404
             L + +G      +    KH  LL  S+D+ L+PRI++   +G        + +   Q+ +
Sbjct:   188 LQR-IG------ILDPHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFN 240

Query:   405 LSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP-FP 463
              S+ +N +PK  YL+ E+  +V+ + ++P Y S SL+ RI+PRH        A KG  FP
Sbjct:   241 YSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEAC-----AAKGVRFP 295

Query:   464 LSLFIPTDE 472
             L + + T+E
Sbjct:   296 LPVMLKTNE 304

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 73/284 (25%), Positives = 136/284 (47%)

Query:   173 TRNATENRYQR-LSEEIELDEKWL--PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSA 229
             T +A + R  R +S   ELD +    P   YL   GL     I+   R   +        
Sbjct:   172 TDSAADTRKLRAVSRVSELDTEGALRPQTLYLLDLGLNLEQ-IKTITRKFAAFPYYSLDG 230

Query:   230 RER--LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIA 287
             + +  +E+LL +G+ + D+  IL ++PQI   ++ +NL+  +AFL +LGI  ++  +II+
Sbjct:   231 KIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIIS 290

Query:   288 ATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSK 347
               P++ +YS    L  TV +L  + G+ E+ +G+++   P ++   ++        +  +
Sbjct:   291 RFPAILTYS-RQKLTSTVEFL-SQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYF-R 347

Query:   348 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 407
              L     DV  ++ + PQ    SI+  L P   F    G    +I  ++     + + SL
Sbjct:   348 SLNV---DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSL 404

Query:   408 EDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 451
             ++N+ PK+ Y    +      L K+P +   SL +RI+PR+  +
Sbjct:   405 KENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPRYELV 447

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
 Identities = 66/251 (26%), Positives = 130/251 (51%)

Query:   235 YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFS 294
             YL+S+GV  RD+  ++ + P +L   V   ++  V +LIS+G+P   + +++     +  
Sbjct:   222 YLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVG 281

Query:   295 YSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD 354
             Y++E ++KP V  L+   G+ ++ L  ++   PQ+L   +    +T+  F S +L    +
Sbjct:   282 YNLEETVKPNVDCLIS-FGVKKELLPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDPE 340

Query:   355 DVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPK 414
                ++V K PQ++     + ++  I FL     +  DI K++    Q+L   +E  +K  
Sbjct:   341 GFARVVEKMPQIVSLK-QNVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRVE-LMKNS 398

Query:   415 YTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIP-TDEC 473
             Y +   E+   ++ L +YP Y + SL+ RI+PR++ L S  K  +    L+ F+  +D+ 
Sbjct:   399 YYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQS--KGIRSS--LNWFLNCSDQR 454

Query:   474 FCQKWAGTTVD 484
             F ++  G  +D
Sbjct:   455 FEERLQGNFID 465

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 77/277 (27%), Positives = 135/277 (48%)

Query:   198 LDYLSTFGL--KESHFIQMYERHMPSLQINVCSARER----LEYLLSVGVKQRDVRRILL 251
             ++YL  FGL  +E   +  Y+ H+       CS  ER    ++Y   +G+ +  ++RIL+
Sbjct:   356 INYLKEFGLSTEEVGRLLAYKPHLMG-----CSIEERWKPLVKYFYYLGIPKEGMKRILV 410

Query:   252 RQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEE 311
              +P +    +E  +   V FL  +GIPN  IG ++   PSL + S+   ++P V +L+  
Sbjct:   411 VKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 470

Query:   312 VGINEKSLGKVVQLSPQVLVQRID--ISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHY 369
              G+ +K +GKV+ + P +L   I   +  N R  ++S  LG     + +M+   P LL Y
Sbjct:   471 AGVTQKDIGKVIAMDPALLGCSIGTKLEPNMR-YYIS--LGIRFYQLGEMIADFPMLLRY 527

Query:   370 SIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSL 429
             ++D+ L P+  +LR   +R    L+ L    +  S SLE  + P++T ++    N V   
Sbjct:   528 NVDN-LRPKYRYLRRTMIRP---LQDLIEFPRFFSYSLERRIIPRHTIMVE---NRVNFK 580

Query:   430 TKYPMYLS-LSLDQRIRP----RHRFLVSLKKAPKGP 461
              +Y +  +    ++R+R     R RF   L      P
Sbjct:   581 LRYMLACTDEEFERRVRDKVERRERFEAGLDSEDSQP 617

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	506
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	8e-33
pfam02536	345	pfam02536, mTERF, mTERF	7e-21
pfam02536	345	pfam02536, mTERF, mTERF	5e-17
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	2e-16
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-07
pfam02536	345	pfam02536, mTERF, mTERF	9e-05
pfam12253	76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	3e-04
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-04
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
smart00733	31	smart00733, Mterf, Mitochondrial termination facto	0.002
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.004
pfam05285	317	pfam05285, SDA1, SDA1	0.004

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  130 bits (328), Expect = 8e-33
 Identities = 71/252 (28%), Positives = 135/252 (53%), Gaps = 10/252 (3%)

Query: 235 YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFS 294
           YL+S+GV  RD+  +L R P+IL   V NN++  V +L SLG+P   + +I+   P +  
Sbjct: 202 YLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILG 261

Query: 295 YSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD 354
           + +E ++KP V  L+ E G+ +++L  V+   P +L   +      +  +L+ +L    +
Sbjct: 262 FDLEETVKPNVECLL-EFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPE 320

Query: 355 DVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPK 414
           D  +++ K PQ++  +  +  L  + FLR  G    D+ K++    Q+L+L+LE  +KP 
Sbjct: 321 DFGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLE-IMKPS 378

Query: 415 YTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKG-PFPLSLFIP-TDE 472
             +   E+   ++ L ++P Y +  L+ RI+PR+  +       KG    L+ F+  +D+
Sbjct: 379 LEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAK-----KGIKCSLAWFLNCSDD 433

Query: 473 CFCQKWAGTTVD 484
            F Q+ +G  ++
Sbjct: 434 KFEQRMSGDFIE 445

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 93.7 bits (233), Expect = 7e-21
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 20/288 (6%)

Query: 196 PLLDYLSTFGLKESHFIQMYERHMPSL--QINVCSARERLEYLLSVGVKQRDVRRILLRQ 253
            + D+L    + +       E++  SL    N    R  +  L  +GV  + +  +L+ +
Sbjct: 71  SVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIR-NVSVLRELGVPPKLLFSLLISR 129

Query: 254 PQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVG 313
           P+      +   E  +  ++ +G   +   ++IA  P L  YS + ++KP V +L     
Sbjct: 130 PR--PVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFL----- 182

Query: 314 INEKSLGKVVQLSPQVLVQR---IDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYS 370
              KSLG  V+    +L +    +  S   +             + + ++ K PQ + YS
Sbjct: 183 ---KSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYS 239

Query: 371 IDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLT 430
            +  +L +I FL  +G    +I K+++   Q+L LS+E  +K K  +L+ E++  ++ L 
Sbjct: 240 -EQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVE-KVKKKTEFLVKEMNWPLKELV 297

Query: 431 KYPMYLSLSLDQRIRPR-HRFLVSLKKAPKGPFPLSLFIP-TDECFCQ 476
           ++P     SL++RI+PR +     + K       LS  +  TDE F Q
Sbjct: 298 EFPQVFGYSLEKRIKPRCNVVKALMSKGKSILPSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 82.1 bits (203), Expect = 5e-17
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 232 RLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPS 291
           +L++L S G  + ++ +I+   P+IL      ++ S   FL  + + +      +   P 
Sbjct: 36  KLQFLQSRGASKSELTKIVSTVPKILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPE 95

Query: 292 LFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA 351
                   +    V  L E +G+  K L  ++   P+ +  +         +    E+G 
Sbjct: 96  SLPQGNNGNKIRNVSVLRE-LGVPPKLLFSLLISRPRPVCGKEVFE---ESLKKVVEMGF 151

Query: 352 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNL 411
                 +++ K P+LL YS D  + P + FL+S+G    D+  +L+   ++L  S +  L
Sbjct: 152 DPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKL 211

Query: 412 KPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSL 454
           + +       L   +  + K P ++S S +Q+I  +  FL+ L
Sbjct: 212 QTQEILKTCGLLEFLSVIKKMPQFVSYS-EQKILNKIEFLLGL 253

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 53/227 (23%), Positives = 116/227 (51%), Gaps = 9/227 (3%)

Query: 230 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 289
           RER+E+L  +G+   D    +   P +L  +V+ N+   + +L  LG+  S + +++   
Sbjct: 93  RERVEFLHKLGLTIED----INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRY 148

Query: 290 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 349
           P +   SV   L P V+YL + + +  + + +V++  P++L  +++ + +T   +L   +
Sbjct: 149 PQVLHASVVVDLAPVVKYL-QGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVS-I 206

Query: 350 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED 409
           G    D+  M+T+ P++L   + + + P++++L S+G+    + ++L     +L   LE+
Sbjct: 207 GVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEE 266

Query: 410 NLKPKYTYLI--NELHNEVQSL-TKYPMYLSLSLDQRIRPRHRFLVS 453
            +KP    L+        + S+  +YP  L L L  ++  +  +L S
Sbjct: 267 TVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTS 313

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 348 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 407
           +LG  R  + +++ ++PQ+LH S+   L P + +L+ + ++  DI +VL    ++L   L
Sbjct: 133 KLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKL 192

Query: 408 EDNLKPKYTYL--INELHNEVQS-LTKYPMYLSLSLDQRIRPRHRFLVSL 454
           E  +     YL  I     ++   LT++P  L + +   I+P+  +L SL
Sbjct: 193 EGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESL 242

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 345 LSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLS 404
           L + LG     +  ++  +P LL    +  L P++ FL+S G   S++ K++ ++ ++L 
Sbjct: 3   LLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILG 62

Query: 405 LSLEDNLKPKYTYL---INELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP 461
                ++   Y +L   I    ++   L KYP  L    +         L  L   PK  
Sbjct: 63  KKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLL 122

Query: 462 FPL 464
           F L
Sbjct: 123 FSL 125

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 6/37 (16%)

Query: 59 YDDDS------EEEGEDDDDDDDEGKEDDWLADDDDF 89
          YD DS      EEEGED + +D+E +E+D   D D F
Sbjct: 40 YDYDSDAEWEEEEEGEDLESEDEEDEEEDDDDDMDGF 76

The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A. The A domain is uniquely required for the progression of S phase in mouse cells, independent of its ability to promote histone deposition but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints. Length = 76

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 341 RCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLT 400
           R  FL K LG   +D+     ++P +L  S+   ++P +++L  +G+  S + ++LR   
Sbjct: 95  RVEFLHK-LGLTIEDI----NEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYP 149

Query: 401 QVLSLSLEDNLKPKYTYLIN---ELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA 457
           QVL  S+  +L P   YL     +  +  + L +YP  L   L+  +     +LVS+  A
Sbjct: 150 QVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVA 209

Query: 458 PK 459
           P+
Sbjct: 210 PR 211

Length = 487

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 60 DDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYD 96
          +D+ +E+    DDDDD+  +DD    DDD  ++++ D
Sbjct: 58 EDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDD 94

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|197848 smart00733, Mterf, Mitochondrial termination factor repeats

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 358 KMVTKHPQLLHYSIDDGLLPRINFLRSIGMR 388
           K+V K PQ+L YS +  L P++ FL+ +G  
Sbjct: 2   KIVKKFPQILGYS-EKKLKPKVEFLKELGFS 31

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins. Length = 31

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 60  DDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYD 96
            DD +++ +DDD  D +  + D L DDDD    ++ D
Sbjct: 68  LDDDDDDDDDDDLPDLDDDDVD-LDDDDDDFLEDDDD 103

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 48  RKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYD 96
           +K    Q L   DDD EEE  + ++D+D   E +W+  + D  EIE  D
Sbjct: 84  KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESD-KEIESSD 131

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	506
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.97
KOG1267	413	consensus Mitochondrial transcription termination	99.68
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	96.63
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	96.56
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.45
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.27
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	94.53
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.86
PF03115	787	Astro_capsid: Astrovirus capsid protein precursor;	92.47
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	92.17
PF08595	149	RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904	91.96
PF03066	149	Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301	91.84
KOG3130	514	consensus Uncharacterized conserved protein [Funct	91.43
PF11702	507	DUF3295: Protein of unknown function (DUF3295); In	91.16
PF12253	77	CAF1A: Chromatin assembly factor 1 subunit A; Inte	88.21
KOG1824	1233	consensus TATA-binding protein-interacting protein	85.39
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	85.02
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	83.65
PTZ00415	2849	transmission-blocking target antigen s230; Provisi	82.96
PTZ00415	2849	transmission-blocking target antigen s230; Provisi	81.33
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	81.19

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=2.6e-51  Score=441.36  Aligned_cols=307  Identities=25%  Similarity=0.513  Sum_probs=223.5

Q ss_pred             cCcCccchhhhhHhhhhhhhhccCcCCChHHHHHHHHhCCCChHHHHHHHhhcCcccccccc-CHHHHHHHHHHCCCChH
Q 010604          166 DQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQR  244 (506)
Q Consensus       166 ~~~g~~~~~~~~~s~~pkl~~~~~~~~~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e-~l~~kL~fL~slGvs~~  244 (506)
                      .++|+. ...++  +||+++ ..++++++.|+++||+++||+.++|++++.++|.+|.++++ ++.|+++||+++|++.+
T Consensus       100 ~s~G~~-~~~i~--~~P~iL-~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~  175 (487)
T PLN03196        100 HKLGLT-IEDIN--EYPLVL-GCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQ  175 (487)
T ss_pred             HHcCCC-hHHhc--cCcHHh-hcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHH
Confidence            557773 34443  577776 56666777777777777777777777777777777776665 56777777776776666


Q ss_pred             hHHHHHhhCCcccccCcccchHHHHHHHHHcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHh
Q 010604          245 DVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQ  324 (506)
Q Consensus       245 ~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~  324 (506)
                      +|.+++.++|++|++++++++.++++||+++|++.++|++++.++|+||+++++++++|++.||+ ++|++.+.|.+++.
T Consensus       176 ~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~-~lGv~~~~I~~il~  254 (487)
T PLN03196        176 DIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLE-SLGLPRLAVARILE  254 (487)
T ss_pred             HHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHH-HcCCCHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666655666666664 56666666666666


Q ss_pred             hCcceeeecccc------------------------------------ccchhhhhhhhhcCCChhhHHHhhhcccccee
Q 010604          325 LSPQVLVQRIDI------------------------------------SWNTRCIFLSKELGAPRDDVVKMVTKHPQLLH  368 (506)
Q Consensus       325 ~~P~iL~~s~e~------------------------------------~l~~kv~fL~k~LG~s~~ev~~ml~k~P~lL~  368 (506)
                      ++|++|+++++.                                    .+.+++.||.+.+|++++++..+++++|++++
T Consensus       255 ~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~  334 (487)
T PLN03196        255 KRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVS  334 (487)
T ss_pred             hCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhc
Confidence            666666555543                                    34444455545566666666666666666666


Q ss_pred             cccccchHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCceeecCccCchHHHH
Q 010604          369 YSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRH  448 (506)
Q Consensus       369 ~sie~~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~  448 (506)
                      .+ +++|.++++||+++||+.++|..||+++|+||++|. ++|++|++||+++||+++++|++||++|+||||+||+|||
T Consensus       335 lS-e~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~  412 (487)
T PLN03196        335 LN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRY  412 (487)
T ss_pred             cc-HHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHH
Confidence            66 467899999999999999999999999999999995 9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCcccc-ccCHHHHHHHhcCCCh
Q 010604          449 RFLVSLKKAPKGPFPLSLF-IPTDECFCQKWAGTTV  483 (506)
Q Consensus       449 ~fL~~L~~l~k~~~~Ls~L-~~sdk~F~~r~~~~sv  483 (506)
                      ++|+. +++   .++|.++ .++|+.|+++|+.-+.
T Consensus       413 ~~L~~-kGl---~~sL~~~L~~sd~~F~~r~v~~y~  444 (487)
T PLN03196        413 ERVAK-KGI---KCSLAWFLNCSDDKFEQRMSGDFI  444 (487)
T ss_pred             HHHHH-cCC---CCCHHHHhccCHHHHHHHHhhhcc
Confidence            99874 232   4578775 5999999999955443

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=8.2e-44  Score=367.83  Aligned_cols=303  Identities=32%  Similarity=0.598  Sum_probs=244.2

Q ss_pred             CcCccchhhhhH--hhhhhhhhccCcCCChHHHHHHHHhCCCChHHHHHHHhhcCccccccc-cCHHHHHHHHHHCCCCh
Q 010604          167 QRGKVMTRNATE--NRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINV-CSARERLEYLLSVGVKQ  243 (506)
Q Consensus       167 ~~g~~~~~~~~~--s~~pkl~~~~~~~~~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~-e~l~~kL~fL~slGvs~  243 (506)
                      ++|++ ..+.+.  .++|.+. -.+.+++..|+++||.+.|++.++|++++.++|.+|..+. +++.|.++||+++|++.
T Consensus         6 ~~gf~-~~~i~~~i~~~P~~l-~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~   83 (345)
T PF02536_consen    6 NHGFS-DSQISKLIRRYPRLL-LCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSD   83 (345)
T ss_dssp             HHHHH-TS-HHHHHH-H-HHH-HT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-H
T ss_pred             HcCCC-HHHHHHHHHhCCceE-EecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCH
Confidence            45553 333333  4578887 6788889999999999999999999999999999999884 58999999999999999


Q ss_pred             HhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHH
Q 010604          244 RDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVV  323 (506)
Q Consensus       244 ~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI  323 (506)
                      +++.+++.++|++|..+.+.++.+++.||+++|++.+.+.+++..+|.++...  ..+++.++++. ++|++++.+.+++
T Consensus        84 ~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~-~lG~~~~~~~~vi  160 (345)
T PF02536_consen   84 EDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLK-ELGFDPEKIGRVI  160 (345)
T ss_dssp             HHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHC-CCTSSHHHHCCCH
T ss_pred             HHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHH-HhCCCchhhcccc
Confidence            99999999999999998877999999999999999987888888888876655  45999999995 8999999999999


Q ss_pred             hhCcceeeeccccccchhhhhhhhhcCCChhhHHHhhhccccceeccccc------------------------------
Q 010604          324 QLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDD------------------------------  373 (506)
Q Consensus       324 ~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml~k~P~lL~~sie~------------------------------  373 (506)
                      ..+|.+|....+..|++++.|| +++|++.+++.+++.++|.++..+.+.                              
T Consensus       161 ~~~P~~l~~~~~~~~~~~v~~L-~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~  239 (345)
T PF02536_consen  161 AKNPRLLLSDSESELKPKVEFL-RSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLS  239 (345)
T ss_dssp             HHHHHHHCGSCCCCCHHHHHHH-HHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THH
T ss_pred             cccchhhccccHHHHHHHHHHH-HhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccc
Confidence            9999888888777899999999 689999999999999999999988754                              


Q ss_pred             --chHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCceeecCccCchHHHHHHH
Q 010604          374 --GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL  451 (506)
Q Consensus       374 --~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~~fL  451 (506)
                        ++.++++||.++||+.+++++|+.++|+||++|. ++|++|++||+++||+++++|+++|++|+||||+||+|||+++
T Consensus       240 ~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~-e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~  318 (345)
T PF02536_consen  240 EEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSI-EKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVL  318 (345)
T ss_dssp             HHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-H-HHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcch-hhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHH
Confidence              6899999999999999999999999999999995 6799999999999999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCCCcccc-ccCHHHHHH
Q 010604          452 VSLKKAP-KGPFPLSLF-IPTDECFCQ  476 (506)
Q Consensus       452 ~~L~~l~-k~~~~Ls~L-~~sdk~F~~  476 (506)
                      ++|+... +..+++.++ .+||++|++
T Consensus       319 ~~l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  319 KVLKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             HTT--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             HHHHHCcCCCCCCHHHHhhccHHHhcC
Confidence            9997532 244677765 599999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=357.97  Aligned_cols=228  Identities=23%  Similarity=0.455  Sum_probs=203.7

Q ss_pred             ChHHHHHHHHhCCCChHHHHHHHhhcCcccccccc-CHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHH
Q 010604          193 KWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAF  271 (506)
Q Consensus       193 ~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e-~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~f  271 (506)
                      ...++++||+++||+.++|.    ++|.+|.++++ ++.|+++||.++|++..+|.+++.++|.||..+++++|.|+++|
T Consensus        91 ~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~f  166 (487)
T PLN03196         91 VMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKY  166 (487)
T ss_pred             HHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHH
Confidence            66789999999999999997    69999999986 79999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCC
Q 010604          272 LISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA  351 (506)
Q Consensus       272 L~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~  351 (506)
                      |+++|++.++|++++.++|++|++++++++.|++.||. .+|++++++.+++.++|++|+++++++++++++|| +++|+
T Consensus       167 L~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~-~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL-~~lGv  244 (487)
T PLN03196        167 LQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLV-SIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYL-ESLGL  244 (487)
T ss_pred             HHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHH-HcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHH-HHcCC
Confidence            99999999999999999999999999999999999996 79999999999999999999999999999999999 68999


Q ss_pred             ChhhHHHhhhccccceecccccchHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCch
Q 010604          352 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEV  426 (506)
Q Consensus       352 s~~ev~~ml~k~P~lL~~sie~~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~~  426 (506)
                      +.+++.+++.++|++|++++++++++++++|+++|++.+++..++.++|.+|++++++++.++++||.+.||++.
T Consensus       245 ~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~  319 (487)
T PLN03196        245 PRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDP  319 (487)
T ss_pred             CHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCH
Confidence            999999999999999999988888888888888888877777777777766666655555555555544444443

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=3.5e-35  Score=303.50  Aligned_cols=252  Identities=31%  Similarity=0.550  Sum_probs=210.6

Q ss_pred             HHHHHhCCCChHHHHHHHhhcCcccccccc-CHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHHHcC
Q 010604          198 LDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLG  276 (506)
Q Consensus       198 l~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e-~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lG  276 (506)
                      .++|+++||+++||.++++++|.++.++++ ++.|+++||.++|++.+++.++++++|.||..+++++|.|+++||+++|
T Consensus         1 ~~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~   80 (345)
T PF02536_consen    1 EDLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIG   80 (345)
T ss_dssp             -HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTS
T ss_pred             ChHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHc
Confidence            368999999999999999999999999987 7999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhH
Q 010604          277 IPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDV  356 (506)
Q Consensus       277 ls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev  356 (506)
                      ++++++++++.++|++|..+.+.++.+++.||+ ++|++.+.+..++..+|..+...  ..+.+.++++ .++|++++++
T Consensus        81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~-~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l-~~lG~~~~~~  156 (345)
T PF02536_consen   81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLR-SLGVPPSQIISLLISRPPLFLSS--EKIKERVEFL-KELGFDPEKI  156 (345)
T ss_dssp             S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHH-HTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHH-CCCTSSHHHH
T ss_pred             CCHHHHHHHHHhcchhhccchHhhhhhhhhHHh-hcCCcHHHHHHHHHhcCccccch--hHHHHHHHHH-HHhCCCchhh
Confidence            999999999999999999887778999999996 89999998888888888877655  4688999999 6999999999


Q ss_pred             HHhhhccccceecccccchHHHHHHHHHhcCChHHHHHHHHhccchhccCccc---------------------------
Q 010604          357 VKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED---------------------------  409 (506)
Q Consensus       357 ~~ml~k~P~lL~~sie~~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~---------------------------  409 (506)
                      .+++.++|.++....++.|+++++||+++||+.+++.+++.++|.+|.+|+++                           
T Consensus       157 ~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il  236 (345)
T PF02536_consen  157 GRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQIL  236 (345)
T ss_dssp             CCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------
T ss_pred             cccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccccccccccccc
Confidence            99999999888888789999999999999999999999999999999999754                           


Q ss_pred             -----cHHHHHHHHHHHhCCchH----HHhhcCceeecCccCchHHHHHHHHHhh
Q 010604          410 -----NLKPKYTYLINELHNEVQ----SLTKYPMYLSLSLDQRIRPRHRFLVSLK  455 (506)
Q Consensus       410 -----~Lk~K~efLv~~mg~~~~----~I~k~P~lL~ySLEkRI~PR~~fL~~L~  455 (506)
                           ++.++++||.+ +|++.+    .+.++|.+|+||.++ ++|++.|+..-+
T Consensus       237 ~~~~~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~~~m  289 (345)
T PF02536_consen  237 SLSEEKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLVKEM  289 (345)
T ss_dssp             THHHHHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHHHCC
T ss_pred             ccchHhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHHHHh
Confidence                 58889999987 899854    468899999999985 999999998643

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.97  E-value=2.9e-31  Score=281.82  Aligned_cols=289  Identities=28%  Similarity=0.452  Sum_probs=253.8

Q ss_pred             ccceeeeecCcCccchhhhhHhhhhhhhhccCcCCChHHHHHHHHhCCCChHHHHHHHhhcCcccccccc-CHHHHHHHH
Q 010604          158 TYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYL  236 (506)
Q Consensus       158 ~f~vsyl~~~~g~~~~~~~~~s~~pkl~~~~~~~~~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e-~l~~kL~fL  236 (506)
                      .|++||+++++|+  ..+.+++....+.  .....+|++++++|+++|+++.+|..++..+|.++..+.+ .+.+++.+|
T Consensus        59 ~f~~s~~~~s~~~--~~~~~~~~~~~~~--~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l  134 (413)
T KOG1267|consen   59 NFESSYLVDSLGL--SIKLARKLSREVS--SEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLL  134 (413)
T ss_pred             Ccceeeecccccc--chhhHHHHHHHHH--hhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhh
Confidence            7999999999997  4777787777776  4556899999999999999999999999999999998877 688999999


Q ss_pred             HHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHHHcC--CCCccccccccccccccccccccchhhhHHHHHHhhCC
Q 010604          237 LSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLG--IPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGI  314 (506)
Q Consensus       237 ~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lG--ls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv  314 (506)
                      .+.|++.+.+.++++..|.+|....+.++.++++||++++  .....+.+++...|.....  +..+. ++.+++ ++|+
T Consensus       135 ~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~--~~~v~-~~~~~~-~lg~  210 (413)
T KOG1267|consen  135 DSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLN--ENSVE-RLDIRR-ELGV  210 (413)
T ss_pred             hccCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhcccccccccc--ccccc-cchhhH-HhCC
Confidence            9999999999999999999999988899999999999985  7777788887777643322  22355 788886 8899


Q ss_pred             ChhhHHHHHhhCcceeee--------------------------------ccccccchhhhhhhhhcCCChhhHHHhhhc
Q 010604          315 NEKSLGKVVQLSPQVLVQ--------------------------------RIDISWNTRCIFLSKELGAPRDDVVKMVTK  362 (506)
Q Consensus       315 ~~~~l~~lI~~~P~iL~~--------------------------------s~e~~l~~kv~fL~k~LG~s~~ev~~ml~k  362 (506)
                      .+..+..++..+|..+..                                ..++++++++.+| +.+||+.++++.|+++
T Consensus       211 ~~~~L~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l-~~~Gf~~~di~~~~~k  289 (413)
T KOG1267|consen  211 KPRLLKSLLESQPRPVLLYLKLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVL-KSLGFSREEIWKMVKK  289 (413)
T ss_pred             CHHHHHHHHhcCccceeeehhhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHH-HHcCCCHHHHHHHHHh
Confidence            988888766666666532                                3556789999999 6899999999999999


Q ss_pred             cccceeccccc---------------------------chHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHH
Q 010604          363 HPQLLHYSIDD---------------------------GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKY  415 (506)
Q Consensus       363 ~P~lL~~sie~---------------------------~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~  415 (506)
                      +|++|+++.+.                           .+.++++|+...|++..++..|++++|+|+.+++++.++++.
T Consensus       290 ~P~~l~~s~~~~~~~~~~~~~~~~~~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~  369 (413)
T KOG1267|consen  290 CPQILGYSVKKNLKTTEYLLKNPKHILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKY  369 (413)
T ss_pred             CchheEeehhhhhHHHHHHHhcchhhhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhH
Confidence            99999999653                           388999999999999999999999999999999755999999


Q ss_pred             HHHHHHhCCchHHHhhcCceeecCccCchHHHHHHHHHhh
Q 010604          416 TYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLK  455 (506)
Q Consensus       416 efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~  455 (506)
                      +|+++.|+++.+.++.+|.+++|++|+|+.||++++.+++
T Consensus       370 ~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~  409 (413)
T KOG1267|consen  370 EYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLG  409 (413)
T ss_pred             HHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHh
Confidence            9999999999999999999999999999999999999886

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.68  E-value=1.3e-16  Score=169.81  Aligned_cols=240  Identities=25%  Similarity=0.427  Sum_probs=186.2

Q ss_pred             HhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCCcc
Q 010604          202 STFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSK  281 (506)
Q Consensus       202 ~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lGls~~~  281 (506)
                      .++|.+...+..+...   +...+..+....+++|.++|++..++.+++..+|.++..+.++.+.++..+|...|++...
T Consensus        67 ~s~~~~~~~~~~~~~~---~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~  143 (413)
T KOG1267|consen   67 DSLGLSIKLARKLSRE---VSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSE  143 (413)
T ss_pred             cccccchhhHHHHHHH---HHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccc
Confidence            4466555555555432   2223455788999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccccccchhhhHHHHHHhhC--CChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHH--
Q 010604          282 IGQIIAATPSLFSYSVENSLKPTVRYLVEEVG--INEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVV--  357 (506)
Q Consensus       282 I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lG--v~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~--  357 (506)
                      +..++...|.+|+.+...++.+.++||+ .++  .....+.++....|.......  .+. ++.++ ..+|..+..+.  
T Consensus       144 l~~i~s~~~~il~~~~~~~~~~~~~~l~-~~~~~~~~s~~~~~~~~~~~~~~~~~--~v~-~~~~~-~~lg~~~~~L~~~  218 (413)
T KOG1267|consen  144 LSSIVSVVPKILLKSKGESLSTFIEFLK-SIPPELLSSVVERLLTPVPSFLLNEN--SVE-RLDIR-RELGVKPRLLKSL  218 (413)
T ss_pred             cchhhhccHHHHHhhcCCchhhHHHHhh-ccchhhhhhHHHHhcccccccccccc--ccc-cchhh-HHhCCCHHHHHHH
Confidence            9999999999999887778999999996 553  666667777766663322111  111 33333 24444444433  


Q ss_pred             ------------------------------HhhhccccceecccccchHHHHHHHHHhcCChHHHHHHHHhccchhccCc
Q 010604          358 ------------------------------KMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL  407 (506)
Q Consensus       358 ------------------------------~ml~k~P~lL~~sie~~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sl  407 (506)
                                                    .++.+.|.++..+.++++++++++|.+.||+.+||.+|++++|++|++| 
T Consensus       219 l~~~~~~~~~~~~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s-  297 (413)
T KOG1267|consen  219 LESQPRPVLLYLKLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYS-  297 (413)
T ss_pred             HhcCccceeeehhhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEee-
Confidence                                          3445556666666789999999999999999999999999999999999 


Q ss_pred             cccHHHHHHHHHHHhCCchHHHhhcCceeecCccCchHHHHHHHHHhh
Q 010604          408 EDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLK  455 (506)
Q Consensus       408 e~~Lk~K~efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~  455 (506)
                      ++++..+++|+++.    .+.+.++|+++.+|.. .+.||++++..++
T Consensus       298 ~~~~~~~~~~~~~~----~~~~~k~p~~l~~s~~-~l~~~ie~l~~~g  340 (413)
T KOG1267|consen  298 VKKNLKTTEYLLKN----PKHILKFPQLLRSSED-KLKPRIEFLLSLG  340 (413)
T ss_pred             hhhhhHHHHHHHhc----chhhhhhhhhhhccch-hhhhhHHHHHHcC
Confidence            58888999999887    3338999999977754 7999999998886

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=96.63  E-value=0.0011  Score=70.19  Aligned_cols=8  Identities=13%  Similarity=0.472  Sum_probs=3.7

Q ss_pred             CCcccccc
Q 010604           98 NGSKYRSQ  105 (506)
Q Consensus        98 ~~~~~~~~  105 (506)
                      +|+.--|-
T Consensus        99 dG~~TDnE  106 (458)
T PF10446_consen   99 DGNETDNE  106 (458)
T ss_pred             cCccCccc
Confidence            45554443

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=96.56  E-value=0.0023  Score=63.27  Aligned_cols=7  Identities=29%  Similarity=0.306  Sum_probs=2.8

Q ss_pred             ccCCccc
Q 010604           44 LKTNRKS   50 (506)
Q Consensus        44 ~~~~~~~   50 (506)
                      .|=.|+.
T Consensus       232 hkyGRQ~  238 (314)
T PF06524_consen  232 HKYGRQG  238 (314)
T ss_pred             chhcccc
Confidence            3334443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.45  E-value=0.0019  Score=42.16  Aligned_cols=29  Identities=45%  Similarity=0.683  Sum_probs=20.8

Q ss_pred             HHHHhccchhccCccccHHHHHHHHHHHhCC
Q 010604          394 KVLRSLTQVLSLSLEDNLKPKYTYLINELHN  424 (506)
Q Consensus       394 ~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~  424 (506)
                      .++.++|++|.++ +++|+++++||. .+|+
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~-~~g~   30 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLK-ELGF   30 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHH-HcCC
Confidence            3567777777777 677777777777 6665

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.27  E-value=0.0031  Score=41.12  Aligned_cols=29  Identities=48%  Similarity=0.816  Sum_probs=18.4

Q ss_pred             HHHhhCCcccccCcccchHHHHHHHHHcCC
Q 010604          248 RILLRQPQILEYTVENNLESHVAFLISLGI  277 (506)
Q Consensus       248 ~iv~~~P~IL~~s~e~~L~p~v~fL~~lGl  277 (506)
                      +++.++|.+|..+ +++|.++++||+++|+
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            3556666666666 4666666666666665

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.53  E-value=0.018  Score=65.37  Aligned_cols=9  Identities=22%  Similarity=0.231  Sum_probs=4.2

Q ss_pred             ccCCCCceE
Q 010604           25 TRPNTPRFV   33 (506)
Q Consensus        25 ~~~~~~~~~   33 (506)
                      |.|-.|+..
T Consensus      1355 Ti~v~R~~~ 1363 (1516)
T KOG1832|consen 1355 TIPVDRCLL 1363 (1516)
T ss_pred             eeecccchh
Confidence            445555443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.86  E-value=0.056  Score=61.62  Aligned_cols=6  Identities=17%  Similarity=0.456  Sum_probs=2.4

Q ss_pred             cccccC
Q 010604           41 AKILKT   46 (506)
Q Consensus        41 ~~~~~~   46 (506)
                      .||..-
T Consensus      1392 ~r~yEI 1397 (1516)
T KOG1832|consen 1392 ARMYEI 1397 (1516)
T ss_pred             hhhhhh
Confidence            444433

>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []

Probab=92.47  E-value=0.036  Score=63.48  Aligned_cols=6  Identities=17%  Similarity=-0.108  Sum_probs=0.0

Q ss_pred             eecCcC
Q 010604          164 DVDQRG  169 (506)
Q Consensus       164 l~~~~g  169 (506)
                      |+|+|+
T Consensus       751 LaDGlS  756 (787)
T PF03115_consen  751 LADGLS  756 (787)
T ss_dssp             ------
T ss_pred             hccCCC
Confidence            344333

Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.17  E-value=0.071  Score=61.51  Aligned_cols=13  Identities=38%  Similarity=0.652  Sum_probs=5.6

Q ss_pred             CCCcccCCcCccc
Q 010604           79 EDDWLADDDDFAE   91 (506)
Q Consensus        79 ~~~~~~~~~~~~~   91 (506)
                      ||||++|++|++|
T Consensus       935 ddd~d~~~~~~~e  947 (1010)
T KOG1991|consen  935 DDDFDEDELDLEE  947 (1010)
T ss_pred             cccccchhccccc
Confidence            4444444434444

>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins

Probab=91.96  E-value=0.15  Score=47.15  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=21.9

Q ss_pred             cCCCCceEEEeeccccccccCCccccccCCCCCCCCCCcccC
Q 010604           26 RPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEG   67 (506)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (506)
                      .|.-..-||++.-+.-.||-  |++-+....|.||.+++|.|
T Consensus        24 ~~~~~~~~vey~G~~r~vL~--r~~~~~~n~~~~d~~~~~~d   63 (149)
T PF08595_consen   24 GPSLYEKVVEYNGSERSVLQ--RKRIRFRNPPRIDEEGDEID   63 (149)
T ss_pred             CccccceeeEECCeeeeEee--cchhhcccccccCccccccc
Confidence            44555557777766667777  22222234566655554443

In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].

>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins

Probab=91.84  E-value=0.03  Score=51.83  Aligned_cols=7  Identities=43%  Similarity=0.506  Sum_probs=2.2

Q ss_pred             cCCCCCC
Q 010604           53 GQTLSLY   59 (506)
Q Consensus        53 ~~~~~~~   59 (506)
                      |+....+
T Consensus       103 G~~~~~~  109 (149)
T PF03066_consen  103 GQHLVAM  109 (149)
T ss_dssp             EEEEEE-
T ss_pred             Ccccccc
Confidence            4333333

They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.43  E-value=0.13  Score=54.02  Aligned_cols=18  Identities=22%  Similarity=0.198  Sum_probs=7.5

Q ss_pred             CccccccCCCCCCCCCCc
Q 010604           47 NRKSRYGQTLSLYDDDSE   64 (506)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~   64 (506)
                      |+..-....+.-||+|||
T Consensus       262 n~sv~~~ss~~edD~Ddd  279 (514)
T KOG3130|consen  262 NCSVNGSSSYHEDDDDDD  279 (514)
T ss_pred             cccccCCCCccccccccc
Confidence            333333334445544443

>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known

Probab=91.16  E-value=0.096  Score=56.89  Aligned_cols=17  Identities=24%  Similarity=0.509  Sum_probs=11.5

Q ss_pred             CCCCCCCCcccCCcCccc
Q 010604           74 DDEGKEDDWLADDDDFAE   91 (506)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~   91 (506)
                      ||||||+|||+.. +++|
T Consensus       307 dDDDDssDWEDSv-eESG  323 (507)
T PF11702_consen  307 DDDDDSSDWEDSV-EESG  323 (507)
T ss_pred             cCCccchhhhhcc-cccc
Confidence            5677788995555 5565

>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []

Probab=88.21  E-value=1  Score=37.15  Aligned_cols=11  Identities=18%  Similarity=0.211  Sum_probs=4.7

Q ss_pred             cccccCCcccc
Q 010604           41 AKILKTNRKSR   51 (506)
Q Consensus        41 ~~~~~~~~~~~   51 (506)
                      .+++.|.+--.
T Consensus        23 s~~v~~r~P~~   33 (77)
T PF12253_consen   23 SKIVTPRNPFA   33 (77)
T ss_pred             ccccccCCccc
Confidence            44444444333

The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=85.39  E-value=0.42  Score=55.28  Aligned_cols=14  Identities=29%  Similarity=0.399  Sum_probs=6.8

Q ss_pred             CCCCCCCCCcccCC
Q 010604           55 TLSLYDDDSEEEGE   68 (506)
Q Consensus        55 ~~~~~~~~~~~~~~   68 (506)
                      -+|-|-.|+|||||
T Consensus       309 YDPNy~yd~~eDed  322 (1233)
T KOG1824|consen  309 YDPNYNYDTEEDED  322 (1233)
T ss_pred             cCCCCCCCCccchh
Confidence            34556555543333

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.02  E-value=0.45  Score=55.20  Aligned_cols=7  Identities=29%  Similarity=0.083  Sum_probs=3.1

Q ss_pred             ecCcCcc
Q 010604          165 VDQRGKV  171 (506)
Q Consensus       165 ~~~~g~~  171 (506)
                      ||-++++
T Consensus       958 VD~f~~f  964 (1010)
T KOG1991|consen  958 VDPFQLF  964 (1010)
T ss_pred             cchHHHH
Confidence            4444443

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=83.65  E-value=10  Score=39.87  Aligned_cols=94  Identities=19%  Similarity=0.287  Sum_probs=51.4

Q ss_pred             HhCCCChHHHHHHHhhcCcccccc-------c-cCHHHHHHHHHH--CCCChHhHHHHHhhCCcccccCcccch-HHHHH
Q 010604          202 STFGLKESHFIQMYERHMPSLQIN-------V-CSARERLEYLLS--VGVKQRDVRRILLRQPQILEYTVENNL-ESHVA  270 (506)
Q Consensus       202 ~s~Gfs~~qI~~Ii~r~P~lL~~~-------~-e~l~~kL~fL~s--lGvs~~~l~~iv~~~P~IL~~s~e~~L-~p~v~  270 (506)
                      +.+|+..-.+..++++||.+|...       + ..+.+...-|..  ..+-.+.-..++.+--.+|.++.+..| -.++.
T Consensus        45 ~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~  124 (335)
T PF11955_consen   45 RQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIA  124 (335)
T ss_pred             HhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHH
Confidence            457786677778888888877531       1 134444444432  222111112333333346666664443 33455


Q ss_pred             HHH-HcCCCCcccccccccccccccc
Q 010604          271 FLI-SLGIPNSKIGQIIAATPSLFSY  295 (506)
Q Consensus       271 fL~-~lGls~~~I~kll~~~P~iL~~  295 (506)
                      .++ ++|++.+-...++.+||..|..
T Consensus       125 ~l~~dLGLP~Df~~~lv~~yP~~Frv  150 (335)
T PF11955_consen  125 HLRRDLGLPDDFRDSLVPKYPDYFRV  150 (335)
T ss_pred             HHHHHcCCChhhccchhhhCCCCcEE
Confidence            555 6777777777777777777654

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PTZ00415 transmission-blocking target antigen s230; Provisional

Probab=82.96  E-value=0.8  Score=55.80  Aligned_cols=16  Identities=19%  Similarity=0.604  Sum_probs=13.2

Q ss_pred             hHHHhhcCceeecCcc
Q 010604          426 VQSLTKYPMYLSLSLD  441 (506)
Q Consensus       426 ~~~I~k~P~lL~ySLE  441 (506)
                      ..++-.+|.+|.+.+.
T Consensus       684 ~ky~~~yp~~~ifp~n  699 (2849)
T PTZ00415        684 AKYLNGYPSFFIFPFN  699 (2849)
T ss_pred             hhhccCCCceEEeehh
Confidence            4678889999999885

>PTZ00415 transmission-blocking target antigen s230; Provisional

Probab=81.33  E-value=0.79  Score=55.85  Aligned_cols=8  Identities=25%  Similarity=0.596  Sum_probs=4.3

Q ss_pred             ccCCcccc
Q 010604           44 LKTNRKSR   51 (506)
Q Consensus        44 ~~~~~~~~   51 (506)
                      +-|.|+.|
T Consensus       131 i~~~~~~r  138 (2849)
T PTZ00415        131 IIKRRRAR  138 (2849)
T ss_pred             EeehHHhh
Confidence            34556665

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.19  E-value=0.78  Score=51.44  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=20.4

Q ss_pred             hcCceeecCccCchHHHHHHHHHhh
Q 010604          431 KYPMYLSLSLDQRIRPRHRFLVSLK  455 (506)
Q Consensus       431 k~P~lL~ySLEkRI~PR~~fL~~L~  455 (506)
                      -+|..++-.++.-++|=|.-++.++
T Consensus       776 ~~Pe~vAp~l~~f~~pWc~sl~~i~  800 (885)
T KOG2023|consen  776 ICPEEVAPHLDSFMRPWCTSLRNID  800 (885)
T ss_pred             cCHHhcchhHHHHHHHHHHHhcccc
Confidence            4577777788888999999888885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	506
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		3e-08
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		5e-08

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)
Query: 231 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 290
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66
Query: 291 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 347
           ++FS  +EN LK  V YL  +   ++  + ++V+ +P +L   V+R+D     R  F  K
Sbjct: 67  AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 120
Query: 348 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 407
           EL         +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + 
Sbjct: 121 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 179
Query: 408 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 460
               K K T   + +HN +      + K+P   +  L  +++ RH FL  L +A   P  
Sbjct: 180 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAK 234
Query: 461 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 493
           P  +SL     IP DE FC++ A  +V  +  F + L
Sbjct: 235 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 270

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)
Query: 231 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 290
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 35  ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 94
Query: 291 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 347
           ++FS  +EN LK  V YL  +   ++  + ++V+ +P +L   V+R+D     R  F  K
Sbjct: 95  AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 148
Query: 348 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 407
           EL         +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + 
Sbjct: 149 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 207
Query: 408 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 460
               K K T   + +HN +      + K+P   +  L  +++ RH FL  L +A   P  
Sbjct: 208 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAK 262
Query: 461 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 493
           P  +SL     IP DE FC++ A  +V  +  F + L
Sbjct: 263 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 298

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	506
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-65
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  211 bits (540), Expect = 2e-65
 Identities = 59/269 (21%), Positives = 124/269 (46%), Gaps = 11/269 (4%)

Query: 231 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 290
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66

Query: 291 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG 350
           ++FS  +EN LK  V YL      ++  + ++V+ +P +L   ++   + R  F  KEL 
Sbjct: 67  AIFSEDLEN-LKTRVAYL-HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELE 123

Query: 351 APRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDN 410
                   +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + +  
Sbjct: 124 LSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMK 182

Query: 411 LKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP-----FPL- 464
           L   + ++ N +      + K+P   +  L  +++ RH FL  L +A   P       L 
Sbjct: 183 LTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLD 241

Query: 465 SLFIPTDECFCQKWAGTTVDKYLAFRQKL 493
            L    DE FC++ A  +V  +  F + L
Sbjct: 242 KLVSIPDEIFCEEIAKASVQDFEKFLKTL 270

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  170 bits (431), Expect = 1e-48
 Identities = 52/298 (17%), Positives = 114/298 (38%), Gaps = 16/298 (5%)

Query: 192 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILL 251
                L  +L + G  +     +  R+  ++     +  +R +    +     ++  IL 
Sbjct: 49  TNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILE 108

Query: 252 RQPQILEYTVEN-NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVE 310
           R P+    +  N NLE+++ FL S+G+    + +++   P  FS S++   K  V +L  
Sbjct: 109 RSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQA 167

Query: 311 -----EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-P 364
                        + K++  +P +L+Q           FL        ++++ ++     
Sbjct: 168 AGLSLGHNDPADFVRKIIFKNPFILIQSTK-RVKANIEFLRSTFNLNSEELLVLICGPGA 226

Query: 365 QLLHYSIDD---GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 421
           ++L  S D            L S+G    ++ K + S   V+ L+ E     K   L+ E
Sbjct: 227 EILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLMEE 285

Query: 422 LHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWA 479
            +  +  + + P  L  S+   ++ R + LV+          ++L   + + +  K  
Sbjct: 286 -NISISQIIENPRVLDSSI-STLKSRIKELVNAGCNLSTL-NITLLSWSKKRYEAKLK 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 77/513 (15%), Positives = 150/513 (29%), Gaps = 150/513 (29%)

Query: 34  VLSTHSNAKILKTNRKSRYGQTLSLYD--DDSEEEGEDDDDDDDEGKEDDWLAD------ 85
           +LS      I+ +  K     TL L+      +EE      ++       +L        
Sbjct: 45  ILSKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 86  ------DDDFAEIEEYDVNG----SKY---RSQKGVNKSKSKGSRRSPVKGCGV-GSFRS 131
                    + E  +   N     +KY   R Q    K +       P K   + G   S
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGS 161

Query: 132 GRS-LQGAQEQLDIRNRRNTIKNSFDDTYY--NSKDVDQRGKVMTRNATENRYQRLSEEI 188
           G++ +  A +          ++   D   +  N K+ +    V+         Q+L  +I
Sbjct: 162 GKTWV--ALDVC----LSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQI 209

Query: 189 ELDEKWLPLLDYLSTFGLK------ESHFIQMYERHMPSLQI--NVCSARERLEYLLSVG 240
             D  W    D+ S   L+      E   +   + +   L +  NV +A+          
Sbjct: 210 --DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--------- 258

Query: 241 VKQRDVR-RILL--RQPQILEYTVENNLESHVA----------------FLISLGIPNSK 281
               ++  +ILL  R  Q+ ++ +     +H++                 L  L      
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 282 ---------------IGQIIAATPSLFSY---------------SVENSLKPT-VRYLVE 310
                          I + I    + +                 S+   L+P   R + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFD 376

Query: 311 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVK-----MVTKHPQ 365
            + +   S      +   +L     + W      + K        V K     +V K P+
Sbjct: 377 RLSVFPPS----AHIPTILLS----LIWFD----VIKSD--VMVVVNKLHKYSLVEKQPK 422

Query: 366 LLHYSIDDGLLPRINFLRSIGMRNSDIL--KVLRSLTQVLSLSLEDNLKPK-----YTYL 418
               SI       I     + + N   L   ++       +   +D + P      Y+++
Sbjct: 423 ESTISIPS-----IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 419 -----INELHNEVQSLTKYPMYLSLS-LDQRIR 445
                  E    +       ++L    L+Q+IR
Sbjct: 478 GHHLKNIEHPERMTLFRM--VFLDFRFLEQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 59/349 (16%), Positives = 111/349 (31%), Gaps = 89/349 (25%)

Query: 187 EIELDEKWLPLLDYLSTFGLKESHFIQMYE-RHMPSLQINVCSARERLEYLLSVGVKQRD 245
           + E  E      D LS F   E  F+  ++ + +  +  ++ S  E +++++        
Sbjct: 8   DFETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSG 63

Query: 246 VRR---ILLRQP-QILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL----FSYSV 297
             R    LL +  ++++  VE  L  +  FL+S       I +     PS+    +    
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS------PI-KTEQRQPSMMTRMYIEQR 116

Query: 298 E---NSLKPTVRYLV---EEVGINEKSL-----------------GKVVQLSPQVL---- 330
           +   N  +   +Y V   +      ++L                 GK   ++  V     
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYK 175

Query: 331 VQRI---DISWNTRCIFLSKELGAPR--DDVVKMVTKHPQLLHYSIDDGLLPRINFLRSI 385
           VQ      I W          L      + V++M+    Q L Y ID     R +   +I
Sbjct: 176 VQCKMDFKIFWLN--------LKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNI 223

Query: 386 GMRNSDILKVLRSLTQ----VLSLSLEDNLKPKYTYLINELHNEVQSL--TKYPMYLSLS 439
            +R   I   LR L +       L +  N++       N  +   + L  T++       
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFK-----Q 276

Query: 440 LDQRIRPRHRFLVSLKKAPKGPFP---LSLFIPTDECFCQKWAGTTVDK 485
           +   +       +SL        P    SL +        K+       
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--------KYLDCRPQD 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	506
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.91
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.51
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	91.73
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	83.13
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	80.73
3hou_D	221	DNA-directed RNA polymerase II subunit RPB4; RNA p	80.34

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=3e-49  Score=408.13  Aligned_cols=315  Identities=17%  Similarity=0.235  Sum_probs=275.7

Q ss_pred             cCCCccceeeeecCcCccchhhhhHhhhhhhhhccCcCCChHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHH
Q 010604          154 SFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERL  233 (506)
Q Consensus       154 ~~~~~f~vsyl~~~~g~~~~~~~~~s~~pkl~~~~~~~~~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL  233 (506)
                      +.....||+|| ++||+.  .+.+.+.+|++.  .....+|++|++||+++|+++++|++|+.++|.+|.++++++.|++
T Consensus        16 ~~~~~~~v~~L-~s~Gl~--~~~~~~~~p~l~--~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l   90 (343)
T 3mva_O           16 PLKNEDLLKNL-LTMGVD--IDMARKRQPGVF--HRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRW   90 (343)
T ss_dssp             ----CCHHHHH-HHHTCC--HHHHHHHCGGGG--GCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHH
T ss_pred             ccccHHHHHHH-HHcCCC--HHHHHHhCchhh--ccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHH
Confidence            34567999999 999995  666788899997  4456799999999999999999999999999999999988999999


Q ss_pred             HHHHHCCCChHhHHHHHhhCCcccccCcc-cchHHHHHHHHHcCCCCccccccccccccccccccccchhhhHHHHHHhh
Q 010604          234 EYLLSVGVKQRDVRRILLRQPQILEYTVE-NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEV  312 (506)
Q Consensus       234 ~fL~slGvs~~~l~~iv~~~P~IL~~s~e-~~L~p~v~fL~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~l  312 (506)
                      +||+++|++.+++.+++.++|++|..+.+ +++.|+++||+++|++.++|++++.++|++|++++++ +++++.+|. ++
T Consensus        91 ~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~-~l  168 (343)
T 3mva_O           91 DLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQ-AA  168 (343)
T ss_dssp             HHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHH-HH
T ss_pred             HHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHH-Hh
Confidence            99999999999999999999995545544 4899999999999999999999999999999999987 599999996 77


Q ss_pred             CCC------hhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHHhhhcc-ccceecccccchHHHHHHHH--
Q 010604          313 GIN------EKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-PQLLHYSIDDGLLPRINFLR--  383 (506)
Q Consensus       313 Gv~------~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml~k~-P~lL~~sie~~L~~kvefL~--  383 (506)
                      |++      ...|.++++++|.+|+.+ +.+++++++||++.+|++++++..++.+. |.++..+ .+.|++++.++.  
T Consensus       169 gv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~  246 (343)
T 3mva_O          169 GLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEK  246 (343)
T ss_dssp             HHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHH
T ss_pred             CCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHH
Confidence            774      678999999999999999 56799999999657999999999998875 5788888 468999887765  


Q ss_pred             --HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCceeecCccCchHHHHHHHHHhhcCCCCC
Q 010604          384 --SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP  461 (506)
Q Consensus       384 --~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~~l~k~~  461 (506)
                        ++||+++|+..||.++|+||++| +++|++|++||++ ||+++++|+++|++|+||+| ||+|||++|+..+.... .
T Consensus       247 ~~~lG~s~~ev~~~v~~~P~il~~s-~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~-~  322 (343)
T 3mva_O          247 LFSLGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLS-T  322 (343)
T ss_dssp             HHTTTCCHHHHHHHHHTCGGGGGSC-HHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSS-S
T ss_pred             HHHcCCCHHHHHHHHHhCCchhccc-HHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCC-C
Confidence              79999999999999999999999 5789999999999 99999999999999999999 99999988887653111 1


Q ss_pred             CCccccccCHHHHHHHhcCC
Q 010604          462 FPLSLFIPTDECFCQKWAGT  481 (506)
Q Consensus       462 ~~Ls~L~~sdk~F~~r~~~~  481 (506)
                      ..+..|.+||++|+++|.+.
T Consensus       323 ~~~~~l~~s~~~F~~~~~~~  342 (343)
T 3mva_O          323 LNITLLSWSKKRYEAKLKKL  342 (343)
T ss_dssp             SCGGGGGSCHHHHHHHHHHT
T ss_pred             CcchhhcCCHHHHHHHHhcc
Confidence            12344579999999999654

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=2.1e-46  Score=374.28  Aligned_cols=257  Identities=21%  Similarity=0.409  Sum_probs=211.6

Q ss_pred             HHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCCccccccccccccccccccccchhhhHHHHH
Q 010604          230 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLV  309 (506)
Q Consensus       230 ~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~  309 (506)
                      .+.++||.++|++.++|.+....+|.+|..++++++.|+++||+++|++.++|++++.++|.+|++++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            3667777777777777766666666667777777777777777777777777777777777777777776 777777775


Q ss_pred             HhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHHhhhccccceecccccchHHHHHHH-HHhcCC
Q 010604          310 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL-RSIGMR  388 (506)
Q Consensus       310 ~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml~k~P~lL~~sie~~L~~kvefL-~~lGfs  388 (506)
                       ++|++..++.+++.++|++|+.+++. ++++++||++++|++.+++.+++.++|.+++.+. +.++++++++ .++||+
T Consensus        85 -~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~s  161 (270)
T 3m66_A           85 -SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGFK  161 (270)
T ss_dssp             -HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCCC
T ss_pred             -HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCCC
Confidence             67777777777777777777777763 7777777755788888888888888888888884 5789999986 589999


Q ss_pred             hHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCceeecCccCchHHHHHHHHHhhc--CCCCC---CC
Q 010604          389 NSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKK--APKGP---FP  463 (506)
Q Consensus       389 ~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~~--l~k~~---~~  463 (506)
                      .+++..||.++|+||++| +++|++|++||+++||+++++|+++|++|+||+| ||+|||+|+++|+.  +.+..   ++
T Consensus       162 ~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~  239 (270)
T 3m66_A          162 HNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS  239 (270)
T ss_dssp             HHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC
T ss_pred             HHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC
Confidence            999999999999999999 5899999999999999999999999999999999 99999999999974  33322   35


Q ss_pred             cccc-ccCHHHHHHHhcCCChHHHHHHHHH
Q 010604          464 LSLF-IPTDECFCQKWAGTTVDKYLAFRQK  492 (506)
Q Consensus       464 Ls~L-~~sdk~F~~r~~~~sve~y~~f~~~  492 (506)
                      |+++ .+||+.|+++|+++++|+|+.|++.
T Consensus       240 L~~~l~~sd~~F~~~~~~~~~eey~~f~k~  269 (270)
T 3m66_A          240 LDKLVSIPDEIFCEEIAKASVQDFEKFLKT  269 (270)
T ss_dssp             HHHHHHSCHHHHHHHTTCSCHHHHHHHHTT
T ss_pred             HHHHhcCCHHHHHHHHhcCCHHHHHHHHhc
Confidence            5555 5999999999999999999999974

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=317.59  Aligned_cols=226  Identities=21%  Similarity=0.330  Sum_probs=188.5

Q ss_pred             chHHHHHHHHHcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhh
Q 010604          264 NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCI  343 (506)
Q Consensus       264 ~L~p~v~fL~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~  343 (506)
                      .+...+.+|.++|+++.+|+++++.+|.++..    ++.++|.||. .+|++.+.|++||.++|++|.++++ .+++++.
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~  118 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS  118 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence            35566677777777777777777777777653    3566777775 6788888888888888888877776 4778888


Q ss_pred             hhhhhcCCChhhHHHhhhccccceecccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 010604          344 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL  422 (506)
Q Consensus       344 fL~k~LG~s~~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~m  422 (506)
                      || +++|++.+++.+++.++|++|+++. +.+..++.+|. ++||+.++|..||.++|+||++| +++|++|++||+++|
T Consensus       119 fL-~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~M  195 (335)
T 4fp9_B          119 YL-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRM  195 (335)
T ss_dssp             HH-HHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTT
T ss_pred             HH-HHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHh
Confidence            88 5789998889999999999999885 57888899886 79999999999999999999999 689999999999999


Q ss_pred             CCchHHHhhcCceeecCccCchHHHHHHHHHhhcCCCC----C-----CCcccc-ccCHHHHHHHhcCCChHHHHHHHHH
Q 010604          423 HNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKG----P-----FPLSLF-IPTDECFCQKWAGTTVDKYLAFRQK  492 (506)
Q Consensus       423 g~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~~l~k~----~-----~~Ls~L-~~sdk~F~~r~~~~sve~y~~f~~~  492 (506)
                      |+++.+|++ |.+|+||++ ||+|||.||+.||..+..    .     .+|..| ..||+.||.++|++|+++|+.|++ 
T Consensus       196 gl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k-  272 (335)
T 4fp9_B          196 GIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKK-  272 (335)
T ss_dssp             CCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHH-
T ss_pred             CCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHH-
Confidence            999999997 999999999 999999999999875321    1     235555 489999999999999999999986 


Q ss_pred             HhhHHHHHH
Q 010604          493 LLLKDFAKK  501 (506)
Q Consensus       493 ll~~~~~~~  501 (506)
                      +++++..++
T Consensus       273 ~~~~e~~~~  281 (335)
T 4fp9_B          273 LLAREEEES  281 (335)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHhhhhcc
Confidence            888877543

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=4.1e-34  Score=295.01  Aligned_cols=254  Identities=21%  Similarity=0.340  Sum_probs=226.3

Q ss_pred             CChHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHH
Q 010604          192 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAF  271 (506)
Q Consensus       192 ~~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~f  271 (506)
                      ..++.+++||.++|++.+++   ++++|.++..+++++.+.++||.++|++.++|++++.++|.+|..+. ++|.|+++|
T Consensus        17 ~~~~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f   92 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVDIDMA---RKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL   92 (343)
T ss_dssp             ---CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred             cccHHHHHHHHHcCCCHHHH---HHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence            35779999999999997665   56789998888899999999999999999999999999999999996 689999999


Q ss_pred             HHHcCCCCccccccccccccc-cccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcC
Q 010604          272 LISLGIPNSKIGQIIAATPSL-FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG  350 (506)
Q Consensus       272 L~~lGls~~~I~kll~~~P~i-L~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG  350 (506)
                      |+++|+++++|+++|.++|++ ++.+.++++.|++.||+ ++|++.+++.+++..+|++|+.+++.. ++++.+| +++|
T Consensus        93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L-~~lg  169 (343)
T 3mva_O           93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFL-QAAG  169 (343)
T ss_dssp             HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHH-HHHH
T ss_pred             HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHH-HhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHH-HHhC
Confidence            999999999999999999995 44444347999999997 899999999999999999999999864 8889998 5655


Q ss_pred             CC------hhhHHHhhhccccceecccccchHHHHHHHH-HhcCChHHHHHHHHhcc-chhccCccccHHHHHHHHHH--
Q 010604          351 AP------RDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLT-QVLSLSLEDNLKPKYTYLIN--  420 (506)
Q Consensus       351 ~s------~~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~eev~~mv~r~P-~iL~~Sle~~Lk~K~efLv~--  420 (506)
                      ++      .+.+.+|+.++|.+++.+ +++++++++||+ .+|++.+++..+|.+.| .++.++ .+.+++++.|+++  
T Consensus       170 v~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~  247 (343)
T 3mva_O          170 LSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKL  247 (343)
T ss_dssp             HHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHH
T ss_pred             CCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHH
Confidence            53      678999999999999999 899999999999 59999999999999865 799999 5899999999998  


Q ss_pred             -HhCCchH----HHhhcCceeecCccCchHHHHHHHHHhhc
Q 010604          421 -ELHNEVQ----SLTKYPMYLSLSLDQRIRPRHRFLVSLKK  456 (506)
Q Consensus       421 -~mg~~~~----~I~k~P~lL~ySLEkRI~PR~~fL~~L~~  456 (506)
                       .+|++.+    .+.++|.+|++|.|+ |+|+++|+.. ++
T Consensus       248 ~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~-mg  286 (343)
T 3mva_O          248 FSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLME-EN  286 (343)
T ss_dssp             HTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHT-TT
T ss_pred             HHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHHHH-cC
Confidence             6899865    469999999999985 9999999998 54

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=3.3e-33  Score=278.77  Aligned_cols=218  Identities=21%  Similarity=0.342  Sum_probs=202.9

Q ss_pred             HHHHHHHHhCCCChHHHHHHHhhcCcccccccc-CHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHH
Q 010604          195 LPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI  273 (506)
Q Consensus       195 ~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e-~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~  273 (506)
                      .+++++|.++|++.++|.+.....|.+|.++++ ++.|+++||.++|++.++|++++.++|.+|.+++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            478999999999999997776666777999986 899999999999999999999999999999999976 999999999


Q ss_pred             HcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCCh
Q 010604          274 SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPR  353 (506)
Q Consensus       274 ~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~  353 (506)
                      ++|++.++|++++.++|++|+.++++ +++++.||++++|++.+++.+++.++|.+|+.+++ .+.+++.++.+++|++.
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~  162 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKH  162 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCH
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCH
Confidence            99999999999999999999999985 99999999668999999999999999999999988 48889998768999999


Q ss_pred             hhHHHhhhccccceecccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 010604          354 DDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE  421 (506)
Q Consensus       354 ~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~  421 (506)
                      +++..|+.++|+++++|. ++++++++||. +||++.++|    .++|.+|++|++ +|+||+.||..-
T Consensus       163 ~ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~L  225 (270)
T 3m66_A          163 NEIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTYL  225 (270)
T ss_dssp             HHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHHh
Confidence            999999999999999995 79999999996 799999876    589999999986 999999999863

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=222.48  Aligned_cols=181  Identities=18%  Similarity=0.346  Sum_probs=118.5

Q ss_pred             hHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHH
Q 010604          194 WLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI  273 (506)
Q Consensus       194 ~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~  273 (506)
                      +..++.+|.++||++++|++++..+|.++   ..++.+++.||.++|++..+|.+||.++|.||..++ ++|.++++||+
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il---~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~fL~  121 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGAS---LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQ  121 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCC---HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccc---hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCH-HHHHHHHHHHH
Confidence            44455555555555555555555555443   233445555555555555555555555555555555 34555555555


Q ss_pred             HcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCCh
Q 010604          274 SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPR  353 (506)
Q Consensus       274 ~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~  353 (506)
                      ++|++..+|.+++.++|++|+++.++                                      +..++.+|..++||+.
T Consensus       122 ~lGl~~~~i~~ll~~~P~lL~~s~e~--------------------------------------i~~~v~~L~~~lGfS~  163 (335)
T 4fp9_B          122 KLGLGEGKLKRVLYCCPEIFTMRQQD--------------------------------------INDTVRLLKEKCLFTV  163 (335)
T ss_dssp             HTTCTTTTHHHHHHHCGGGGTSCHHH--------------------------------------HHHHHHHHHHTSCCCH
T ss_pred             HcCCCHHHHHHHHHhCchhhccChHH--------------------------------------HHHHHHHHHHHcCCCH
Confidence            55555555555555555555554432                                      3344445546789999


Q ss_pred             hhHHHhhhccccceecccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCC
Q 010604          354 DDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN  424 (506)
Q Consensus       354 ~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~  424 (506)
                      +++..||.++|++|.++ .++|++|++||. .||++.++|.    + |++|+||++ +|++|+.||.. +|.
T Consensus       164 ~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          164 QQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR  227 (335)
T ss_dssp             HHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred             HHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence            99999999999999998 568999999997 7999999875    3 999999984 89999999986 443

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.51  E-value=3.6e-13  Score=120.62  Aligned_cols=183  Identities=25%  Similarity=0.407  Sum_probs=154.4

Q ss_pred             hhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHHhhhccccceecccccchHHHHHHHH-HhcCCh
Q 010604          311 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRN  389 (506)
Q Consensus       311 ~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~  389 (506)
                      -+|+.++-+.-++.+.|++|...+. .++.+-.+| ..+|+.+..+..++--+|.++++. ...+...+..|+ +.-|+.
T Consensus        42 llglnpepvcvvlkkspqllklpim-qmrkrssyl-qklglgegklkrvlyccpeiftmr-qqdindtvrllkekclftv  118 (239)
T 4fzv_B           42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEKCLFTV  118 (239)
T ss_dssp             HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHHSCCCH
T ss_pred             hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHH-HHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHhHHhhH
Confidence            5799999999999999999877664 366667788 479999988888888899999877 567888888887 578999


Q ss_pred             HHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCceeecCccCchHHHHHHHHHhhcCC----CC----C
Q 010604          390 SDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP----KG----P  461 (506)
Q Consensus       390 eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~~l~----k~----~  461 (506)
                      .++-+++..||.+|.-++ ..+.-|+.|-.-.||+.+-+|++ ..+|.||+. .|+.||-+++.|++.+    ++    |
T Consensus       119 qqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqip  195 (239)
T 4fzv_B          119 QQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP  195 (239)
T ss_dssp             HHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSC
T ss_pred             HHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCC
Confidence            999999999999999997 68999999999999999999988 578999997 6999999999998643    22    2


Q ss_pred             CCc-cc-cccCHHHHHHHhcCCChHHHHHHHHHHhhHHHHH
Q 010604          462 FPL-SL-FIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAK  500 (506)
Q Consensus       462 ~~L-s~-L~~sdk~F~~r~~~~sve~y~~f~~~ll~~~~~~  500 (506)
                      .|+ .. +..++.+|+++-+.+++|+|+.|++ +++++..|
T Consensus       196 npllkdilrvseaeflartactsveefqvfkk-llareeee  235 (239)
T 4fzv_B          196 NPLLKDILRVSEAEFLARTACTSVEEFQVFKK-LLAREEEE  235 (239)
T ss_dssp             CCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHH-HHHHHHHH
T ss_pred             ChHHHHHHHHhHHHHHHHHhcccHHHHHHHHH-HHhhhhhh
Confidence            344 33 4689999999999999999999996 88887665

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.21  E-value=3.1e-06  Score=75.91  Aligned_cols=139  Identities=22%  Similarity=0.423  Sum_probs=94.0

Q ss_pred             HHHcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCC
Q 010604          272 LISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA  351 (506)
Q Consensus       272 L~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~  351 (506)
                      +.-+|+.++-+.-++.+.|++|...+.. ++.+-.||+ .+|+.+..+.+++--||.+++++-. .++..+..|...+-|
T Consensus        40 fillglnpepvcvvlkkspqllklpimq-mrkrssylq-klglgegklkrvlyccpeiftmrqq-dindtvrllkekclf  116 (239)
T 4fzv_B           40 FILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLF  116 (239)
T ss_dssp             HHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHH-HHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHHHHSCC
T ss_pred             HHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHH-HhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHHHhHHh
Confidence            3345666666666666666666655542 555666664 5666666666666666666665544 355556666556677


Q ss_pred             ChhhHHHhhhccccceecccccchHHHHHHH-HHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604          352 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFL-RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN  420 (506)
Q Consensus       352 s~~ev~~ml~k~P~lL~~sie~~L~~kvefL-~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~  420 (506)
                      +..++.+++..+|.++.... ..+.-|+.|- -+||+...+|.+     ...|.||+ .+|+.+.-||..
T Consensus       117 tvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiyler  179 (239)
T 4fzv_B          117 TVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLER  179 (239)
T ss_dssp             CHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHHH
Confidence            77778888888888887765 4677777775 478888887642     45788996 789999998876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=91.73  E-value=0.041  Score=55.76  Aligned_cols=9  Identities=22%  Similarity=0.453  Sum_probs=4.3

Q ss_pred             eEEEeeccc
Q 010604           32 FVVLSTHSN   40 (506)
Q Consensus        32 ~~~~~~~~~   40 (506)
                      ...+.+..|
T Consensus       305 L~~L~l~~N  313 (386)
T 2ca6_A          305 LLFLELNGN  313 (386)
T ss_dssp             CCEEECTTS
T ss_pred             ceEEEccCC
Confidence            344555544

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=83.13  E-value=6  Score=33.97  Aligned_cols=102  Identities=15%  Similarity=0.099  Sum_probs=64.2

Q ss_pred             hhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhh-----hhcCCChhhHHHhhhccccceecccccchHH
Q 010604          303 PTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLS-----KELGAPRDDVVKMVTKHPQLLHYSIDDGLLP  377 (506)
Q Consensus       303 p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~-----k~LG~s~~ev~~ml~k~P~lL~~sie~~L~~  377 (506)
                      ..|..|. ++||+...+.+.+...-.        ..+..++||.     .+.|++...+-..+..+..--  .....-..
T Consensus        10 ~~v~~l~-~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~--~~~~~~~~   78 (118)
T 4ae4_A           10 QCVETVV-NMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSE--EKMMEFLQ   78 (118)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCH--HHHHHHHH
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCc--cccccCHH
Confidence            4677775 899999888888765421        2334455553     245777665544443221100  00012345


Q ss_pred             HHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604          378 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH  423 (506)
Q Consensus       378 kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg  423 (506)
                      .+.-|.+|||+.+.+..+++.+        ...+..-+++|....|
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~~  116 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARAG  116 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhcc
Confidence            6888899999999999998876        5678888888876543

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=80.73  E-value=1.2  Score=45.78  Aligned_cols=46  Identities=26%  Similarity=0.396  Sum_probs=36.1

Q ss_pred             cccCHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCC
Q 010604          225 NVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN  279 (506)
Q Consensus       225 ~~e~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lGls~  279 (506)
                      ........++.|.++|++...+.+.+..       .. +++..-++||-+ |++.
T Consensus       164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a-------~~-nn~~~A~e~L~~-gip~  209 (368)
T 1oqy_A          164 TGSEYETMLTEIMSMGYERERVVAALRA-------SY-NNPHRAVEYLLT-GIPG  209 (368)
T ss_dssp             CTTTHHHHHHHHHTTTCCSHHHHHHHHH-------SC-SSTTHHHHTTTT-SSTT
T ss_pred             CCcchHHHHHHHHHcCCCHHHHHHHHHH-------cC-CCHHHHHHHHHh-CCCc
Confidence            3457889999999999999999987764       33 578888999964 5654

>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...

Probab=80.34  E-value=1.2  Score=42.06  Aligned_cols=51  Identities=20%  Similarity=0.217  Sum_probs=33.6

Q ss_pred             hHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCC--CChHhHHHHHh
Q 010604          194 WLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVG--VKQRDVRRILL  251 (506)
Q Consensus       194 ~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slG--vs~~~l~~iv~  251 (506)
                      ...|-.+|...|+.+..++.|..-.|       +++.+.-..+-++.  ++..+|..|+.
T Consensus       160 v~aVrELL~~~gLheFEiAqLANLcP-------eTaDEARALIPSL~~k~sDEeLqeILd  212 (221)
T 3hou_D          160 VGAVIQLLKSTGLHPFEVAQLGSLAC-------DTADEAKTLIPSLNNKISDDELERILK  212 (221)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHSCC-------CSHHHHHHHCTTCTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCChHHhheecccCC-------CCHHHHHHHHHhhcccCCHHHHHHHHH
Confidence            34566777889999999988876444       55555555555554  56666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00