Citrus Sinensis ID: 010607

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500------
MAEASRTFHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHCSVSTTNDASRTKTTVTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFVNLFK
ccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEccccEEEEEccccccccEEEEcccccccccccccccccHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccEEEccccccccccccccEEEEEcccccEEEEEEccccccccEEEcccccccHHHHHHHccccccccccccccEEcccccccccHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccHHccc
ccHHHHHHHHccccccccccccccccccccccHHHcccccccccccHHHcccHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccEEEEEccccccEEEEEEccccccEEEEccHHHEEcHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHcccccccccEccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEHHHHHccccccEEEEEEcccccEEEEEEEcccccccEEEEEcccccHHHHHHHcccccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHcc
maeasrtfhtillpsfshlhkaqspagftdfprkrcghrivvhcsvsttndasrtkttvtqnmipwgceidslENASTLQKWlsdsglppqkmaiqkvdVGERGLVALKNIrkgekllfvppslvitadskwscpeagevlkqcsvpdwpLLATYLISEAsfekssrwsnyisalprqpyslLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIfskypdlfpeevfnmetFKWSFGILFSRLvrlpsmdgrvalvpwadmlnhscevetfldydkssqgvvfttdrqyqpgeQVFISYgkksngelllsygfvpregtnpsdsvelplslkksdKCYKEKLEALRKYGlsasecfpiqitgwPLELMAYAYLVvsppsmkgkFEEMAAAASNkmtskkdikcpeiDEQALQFILDSCESSISKYSRFLqasgsmdldttspkqlNRRVFLKQLAVDLCTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFVNLFK
MAEASRTFHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHcsvsttndasrtkttvtqnmiPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKnirkgekllfvppSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWsnyisalprqpySLLYWTRAELDRYLEASQIRERAIEritnvigtyndLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVpregtnpsdsvelplslkksdkCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAvdlctserriLFRAQYIlrrrlrdirsgelralrlfdnfvnlfk
MAEASRTFHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHCSVSTTNDASRTKTTVTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFVNLFK
*******FHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHCSVSTTNDASRTKTTVTQNMIPWGCEIDSLENASTLQKWLSDS*****KMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVP********************KCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVS*****************************IDEQALQFILDSCESSISKYSRFL***************LNRRVFLKQLAVDLCTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFVNLF*
****************************************************************************STLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMT***DIKCPEIDEQALQFILDSCESSISKYSRFL*******************VFLKQLAVDLCTSERRILFRAQYILR******************N***LF*
MAEASRTFHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHCSVSTTNDASRTKTTVTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEM************DIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFVNLFK
*************PSFS******************CG**********************************SLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFVNLFK
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEASRTFHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHCSVSTTNDASRTKTTVTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFVNLFK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query506 2.2.26 [Sep-21-2011]
P94026491 Ribulose-1,5 bisphosphate N/A no 0.743 0.765 0.272 2e-24
Q43088489 Ribulose-1,5 bisphosphate N/A no 0.545 0.564 0.327 5e-24
Q9XI84482 [Fructose-bisphosphate al no no 0.760 0.798 0.268 1e-22
B2KI88594 Histone-lysine N-methyltr N/A no 0.579 0.493 0.277 1e-21
B5FW36595 Histone-lysine N-methyltr N/A no 0.579 0.492 0.274 3e-21
B0VX69595 Histone-lysine N-methyltr yes no 0.579 0.492 0.274 4e-21
A9X1D0595 Histone-lysine N-methyltr N/A no 0.579 0.492 0.274 4e-21
Q86TU7594 Histone-lysine N-methyltr yes no 0.579 0.493 0.274 5e-21
E2RBS6588 Histone-lysine N-methyltr yes no 0.579 0.498 0.274 6e-21
B1MTJ4595 Histone-lysine N-methyltr N/A no 0.579 0.492 0.274 6e-21
>sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1 Back     alignment and function desciption
 Score =  114 bits (285), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 196/414 (47%), Gaps = 38/414 (9%)

Query: 76  ASTLQKWLSDSGLPPQKMAIQKVDVGER-GLVALKNIRKGEKLLFVPPSLVITADSKWSC 134
             T  +WL   G+   K  ++   V E  GLVA ++I KGE +L VP    I  D+  + 
Sbjct: 57  VQTFWQWLCKEGVVTTKTPVKPGIVPEGLGLVAKRDIAKGETVLQVPKRFWINPDAV-AE 115

Query: 135 PEAGEVLKQCS-VPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRY 193
            E G V   CS +  W  +A +L+ E  +   S+W  Y+  LP+   S +YW+  EL   
Sbjct: 116 SEIGNV---CSGLKPWISVALFLLRE-KWRDDSKWKYYMDVLPKSTDSTIYWSEEELSE- 170

Query: 194 LEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSR-LVR 252
           ++ +Q+    +     V   +  +   +  +   LFP  +  ++ F W+FGIL SR   R
Sbjct: 171 IQGTQLLSTTMSVKDYVQNEFQKVEEEVILRNKQLFPFPI-TLDDFFWAFGILRSRAFSR 229

Query: 253 LPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQG--VVFTTDRQY--------QPGEQV 302
           L + +  + LVP+AD+ NH+  V T  D+    +G   +F+ D  +        + G+Q+
Sbjct: 230 LRNQN--LILVPFADLTNHNARVTT-EDHAHEVRGPAGLFSWDLLFSLRSPLKLKAGDQL 286

Query: 303 FISYG-KKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASE 361
           FI Y   KSN ++ L YGF+  E ++  D+  L L + +SD+ Y +KL+     G+  + 
Sbjct: 287 FIQYDLNKSNADMALDYGFI--EPSSARDAFTLTLEISESDEFYGDKLDIAETNGIGETA 344

Query: 362 CFPIQI-TGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQAL-Q 419
            F I+I    P  ++ Y  LV    +     E +     N +     +     +E+ + +
Sbjct: 345 YFDIKIGQSLPPTMIPYLRLVALGGTDAFLLESI---FRNSVWGHLGLPVSRANEELICK 401

Query: 420 FILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRIL 473
            + D+C+S++S Y   ++     D        L+ R+   Q+AV +   E+R+L
Sbjct: 402 VVRDACKSALSGYHTTIEE----DEKLMEEGNLSTRL---QIAVGIRLGEKRVL 448
Methylates 'Lys-14' of the large subunit of RuBisCO.
Nicotiana tabacum (taxid: 4097)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 7
>sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1 Back     alignment and function description
>sp|Q9XI84|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1 Back     alignment and function description
>sp|B2KI88|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|B5FW36|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|B0VX69|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2 Back     alignment and function description
>sp|A9X1D0|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|Q86TU7|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1 Back     alignment and function description
>sp|E2RBS6|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|B1MTJ4|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
224129218503 predicted protein [Populus trichocarpa] 0.990 0.996 0.814 0.0
255582876508 Ribulose-1,5 bisphosphate carboxylase/ox 0.994 0.990 0.808 0.0
356547583499 PREDICTED: ribulose-1,5 bisphosphate car 0.958 0.971 0.782 0.0
225447500497 PREDICTED: ribulose-1,5 bisphosphate car 0.972 0.989 0.819 0.0
449453618497 PREDICTED: ribulose-1,5 bisphosphate car 0.982 1.0 0.796 0.0
357469947494 SET domain-containing protein [Medicago 0.954 0.977 0.770 0.0
357462493497 SET domain-containing protein [Medicago 0.954 0.971 0.770 0.0
297829320504 SET domain-containing protein [Arabidops 0.990 0.994 0.766 0.0
15231493504 rubisco methyltransferase-like protein [ 0.980 0.984 0.758 0.0
21537309504 putative ribulose-1,5-bisphosphate carbo 0.980 0.984 0.754 0.0
>gi|224129218|ref|XP_002320530.1| predicted protein [Populus trichocarpa] gi|222861303|gb|EEE98845.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/508 (81%), Positives = 450/508 (88%), Gaps = 7/508 (1%)

Query: 1   MAEASRT-FHTILLPSFSHLHKAQSPAGFTD-FPRKRCGHRIVVHCSVSTTNDASRTKTT 58
           MAEA R   +T  LPS   LHK      ++  F  KR      + CS+ST++D ++    
Sbjct: 1   MAEACRIILNTTFLPSLHSLHKTHKKVSYSQPFLHKR---HPAIQCSISTSSD-TKAAAK 56

Query: 59  VTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLL 118
           V++  +PWGC+IDSLENA  LQKWLSDSGLPPQKMAIQKV+VGERGLVALKNIRKGE LL
Sbjct: 57  VSET-VPWGCDIDSLENAEALQKWLSDSGLPPQKMAIQKVEVGERGLVALKNIRKGEMLL 115

Query: 119 FVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQ 178
           FVPPSLVI ADS+WSCPEAGEVLK+ SVPDWPLLATYLISEASFEKSSRWSNYISALPRQ
Sbjct: 116 FVPPSLVIAADSEWSCPEAGEVLKKYSVPDWPLLATYLISEASFEKSSRWSNYISALPRQ 175

Query: 179 PYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMET 238
           PYSLLYWTRAELD YLEASQIRERAIERITNV GTYNDLRLRIFSKYP LFPEEVFNMET
Sbjct: 176 PYSLLYWTRAELDTYLEASQIRERAIERITNVTGTYNDLRLRIFSKYPHLFPEEVFNMET 235

Query: 239 FKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQP 298
           FKWSFGILFSRLVRLPSMDGRVALVPWADMLNHS EVETFLDYDKSS+GVVFTTDR YQP
Sbjct: 236 FKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSSEVETFLDYDKSSKGVVFTTDRPYQP 295

Query: 299 GEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLS 358
           GEQVFISYG+KSNGELLLSYGFVPREGTNPSDSVEL LSLKKSDKCYKEKLEAL+K+GLS
Sbjct: 296 GEQVFISYGRKSNGELLLSYGFVPREGTNPSDSVELSLSLKKSDKCYKEKLEALKKHGLS 355

Query: 359 ASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQAL 418
            S+CFP+Q+TGWPLELMAYAYL VSPPSM  +FEEMAAAASNK T+ K I  P+I+EQAL
Sbjct: 356 VSQCFPLQVTGWPLELMAYAYLAVSPPSMSRQFEEMAAAASNKTTTNKKITYPDIEEQAL 415

Query: 419 QFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRILFRAQY 478
           QFILDSCE SISKY++FLQASGSMDLD TSPKQLNRR+FLKQLAVDLC+SERRILFRAQY
Sbjct: 416 QFILDSCELSISKYTKFLQASGSMDLDVTSPKQLNRRLFLKQLAVDLCSSERRILFRAQY 475

Query: 479 ILRRRLRDIRSGELRALRLFDNFVNLFK 506
           +LRRRLRDIRSGELR L++F+ F NLF+
Sbjct: 476 VLRRRLRDIRSGELRGLKIFNGFRNLFR 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582876|ref|XP_002532210.1| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] gi|223528106|gb|EEF30179.1| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356547583|ref|XP_003542190.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|225447500|ref|XP_002267469.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Vitis vinifera] gi|296085051|emb|CBI28466.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453618|ref|XP_004144553.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449511789|ref|XP_004164054.1| PREDICTED: LOW QUALITY PROTEIN: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357469947|ref|XP_003605258.1| SET domain-containing protein [Medicago truncatula] gi|355506313|gb|AES87455.1| SET domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357462493|ref|XP_003601528.1| SET domain-containing protein [Medicago truncatula] gi|355490576|gb|AES71779.1| SET domain-containing protein [Medicago truncatula] gi|388500078|gb|AFK38105.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297829320|ref|XP_002882542.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328382|gb|EFH58801.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15231493|ref|NP_187424.1| rubisco methyltransferase-like protein [Arabidopsis thaliana] gi|6466950|gb|AAF13085.1|AC009176_12 putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|6648179|gb|AAF21177.1|AC013483_1 putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|15028205|gb|AAK76599.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|19310671|gb|AAL85066.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|332641064|gb|AEE74585.1| rubisco methyltransferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21537309|gb|AAM61650.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
TAIR|locus:2077342504 AT3G07670 [Arabidopsis thalian 0.990 0.994 0.760 6e-206
TAIR|locus:2014764482 LSMT-L "lysine methyltransfera 0.826 0.867 0.266 5.2e-27
TAIR|locus:2145663514 AT5G14260 "AT5G14260" [Arabido 0.569 0.560 0.290 1.9e-23
UNIPROTKB|B2KI88594 SETD3 "Histone-lysine N-methyl 0.586 0.5 0.281 2e-22
UNIPROTKB|F6R2J7594 SETD3 "Uncharacterized protein 0.583 0.496 0.282 2.7e-22
UNIPROTKB|F1SAQ4595 SETD3 "Uncharacterized protein 0.790 0.672 0.262 2.7e-22
UNIPROTKB|B0VX69595 SETD3 "Histone-lysine N-methyl 0.583 0.495 0.282 4.5e-22
UNIPROTKB|B5FW36595 SETD3 "Histone-lysine N-methyl 0.583 0.495 0.282 4.5e-22
UNIPROTKB|Q86TU7594 SETD3 "Histone-lysine N-methyl 0.583 0.496 0.282 5.8e-22
UNIPROTKB|A9X1D0595 SETD3 "Histone-lysine N-methyl 0.583 0.495 0.282 5.8e-22
TAIR|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1992 (706.3 bits), Expect = 6.0e-206, P = 6.0e-206
 Identities = 387/509 (76%), Positives = 435/509 (85%)

Query:     1 MAEASRTFHTILLPSFSHLHKAQSP---AGFTDFPRKRCGHRIVVHCSVSTTNDASRTKT 57
             MA+A     + LLP++S LHK ++      F+  P  RC  R  +HCSVS      ++  
Sbjct:     1 MAKAC-LLQSTLLPAYSPLHKLRNQNITLSFSPLPLSRC--RPGIHCSVSAGETTIQSME 57

Query:    58 TVTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKL 117
                +  I WGCEIDSLENA++LQ WLSDSGLPPQKMAI +VD+GERGLVA +N+RKGEKL
Sbjct:    58 EAPK--ISWGCEIDSLENATSLQNWLSDSGLPPQKMAIDRVDIGERGLVASQNLRKGEKL 115

Query:   118 LFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPR 177
             LFVPPSLVI+ADS+W+  EAGEV+K+  VPDWPLLATYLISEAS +KSSRW NYISALPR
Sbjct:   116 LFVPPSLVISADSEWTNAEAGEVMKRYDVPDWPLLATYLISEASLQKSSRWFNYISALPR 175

Query:   178 QPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNME 237
             QPYSLLYWTR ELD YLEASQIRERAIERITNV+GTY DLR RIFSK+P LFP+EVFN E
Sbjct:   176 QPYSLLYWTRTELDMYLEASQIRERAIERITNVVGTYEDLRSRIFSKHPQLFPKEVFNDE 235

Query:   238 TFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQ 297
             TFKWSFGILFSRLVRLPSMDGR ALVPWADMLNH+CEVETFLDYDKSS+GVVFTTDR YQ
Sbjct:   236 TFKWSFGILFSRLVRLPSMDGRFALVPWADMLNHNCEVETFLDYDKSSKGVVFTTDRPYQ 295

Query:   298 PGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGL 357
             PGEQVFISYG KSNGELLLSYGFVPREGTNPSDSVEL LSL+K+DKCY+EKL+AL+K+GL
Sbjct:   296 PGEQVFISYGNKSNGELLLSYGFVPREGTNPSDSVELALSLRKNDKCYEEKLDALKKHGL 355

Query:   358 SASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQA 417
             S  +CFP++ITGWP+ELMAYAYLVVSPP M+  FEEMA AASNK ++K D+K PEI+E A
Sbjct:   356 STPQCFPVRITGWPMELMAYAYLVVSPPDMRNNFEEMAKAASNKTSTKNDLKYPEIEEDA 415

Query:   418 LQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRILFRAQ 477
             LQFILDSCE+SISKYSRFL+ SGSMDLD TSPKQLNR+ FLKQLAVDL TSERRIL+RAQ
Sbjct:   416 LQFILDSCETSISKYSRFLKESGSMDLDITSPKQLNRKAFLKQLAVDLSTSERRILYRAQ 475

Query:   478 YILRRRLRDIRSGELRALRLFDNFVNLFK 506
             YILRRRLRDIRSGEL+ALRLF    N FK
Sbjct:   476 YILRRRLRDIRSGELKALRLFSGLRNFFK 504
GO:0009507 "chloroplast" evidence=ISM
GO:0030785 "[ribulose-bisphosphate carboxylase
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
TAIR|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B2KI88 SETD3 "Histone-lysine N-methyltransferase setd3" [Rhinolophus ferrumequinum (taxid:59479)] Back     alignment and assigned GO terms
UNIPROTKB|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)] Back     alignment and assigned GO terms
UNIPROTKB|B5FW36 SETD3 "Histone-lysine N-methyltransferase setd3" [Otolemur garnettii (taxid:30611)] Back     alignment and assigned GO terms
UNIPROTKB|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
pfam09273128 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate 2e-14
pfam00856113 pfam00856, SET, SET domain 4e-10
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 3e-08
>gnl|CDD|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding Back     alignment and domain information 
 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 18/141 (12%)

Query: 338 LKKSDKCYKEKLEALRKYGLSASECFPIQITGW-PLELMAYAYLVVSPPSMKGKFEEMAA 396
           L  SD  Y++KL+ L + GL  +  F + I G    EL+AY  L+          EE+ A
Sbjct: 1   LSPSDPLYEDKLQLLERNGLLENGNFTLGIDGPPSWELLAYLRLLCLSD------EELTA 54

Query: 397 AASNKM----TSKKDIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQL 452
             S  +      K+    PE +E+ALQF+   C+  +S+Y   L+      L   +  + 
Sbjct: 55  WKSVLLGAVIGHKEAPLSPENEEKALQFLEKLCKLLLSEYPTTLEED-EALLKKGNLSEQ 113

Query: 453 NRRVFLKQLAVDLCTSERRIL 473
            R      LAV L   E+RIL
Sbjct: 114 LR------LAVRLRLGEKRIL 128

Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex. Length = 128
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 506
KOG1337472 consensus N-methyltransferase [General function pr 100.0
KOG1338466 consensus Uncharacterized conserved protein [Funct 100.0
PF09273128 Rubis-subs-bind: Rubisco LSMT substrate-binding; I 99.76
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.71
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 98.81
KOG2589453 consensus Histone tail methylase [Chromatin struct 95.41
KOG1085392 consensus Predicted methyltransferase (contains a 94.13
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 90.86
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 88.86
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 88.27
COG2940480 Proteins containing SET domain [General function p 85.04
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-36  Score=322.31  Aligned_cols=406  Identities=33%  Similarity=0.483  Sum_probs=297.8

Q ss_pred             hcHHHHHHHHHhCCCCCCCcEEEeeCCCcceEEEcccCCCCCEEEEcCCCCccccccccCCchhhhhhccCCCCChHHHH
Q 010607           74 ENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLA  153 (506)
Q Consensus        74 ~~~~~l~~Wl~~~G~~~~~v~i~~~~~~GrGlvA~~~I~~ge~ll~IP~~l~it~~~~~~~~~~~~~l~~~~l~~~~~La  153 (506)
                      ++...+.-|.+..|....+..+......++++.+..++..++.+..+|....+..........         .  ...++
T Consensus        47 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~l~  115 (472)
T KOG1337|consen   47 ENIKSLKFWLTGNGLSSSKSSLPGNDIDEWPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYNDL---------L--PIALA  115 (472)
T ss_pred             cccccceeccccCCcchhhhccccccccccchhhhhhhhhhhhhccCCchhhhccccccCccc---------c--HHHHH
Confidence            345566677777777653333222234456666666666676666666666555544322110         1  16799


Q ss_pred             HHHHHhhhcCCCCCcHHHHHhcCCCCCCccccCHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC---
Q 010607          154 TYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFP---  230 (506)
Q Consensus       154 l~Ll~E~~~g~~S~W~pYl~~LP~~~~~pl~w~~~el~~lL~gs~l~~~~~~~~~~~~~~y~~l~~~l~~~~p~~f~---  230 (506)
                      +++++|...+..|.|.+|+..||.++++|++|..+++. .|.+++....+..+...++..|..+.. +...+|..++   
T Consensus       116 ~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  193 (472)
T KOG1337|consen  116 LFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVK-SLLSTPLFEIVASRRQNLVNKSAELLE-VLQSHPSLFGSDL  193 (472)
T ss_pred             HHHHHhhhccccccchhhhhhchhhcCCccccCHHHHH-HhhcchhhHHHHHHHHHhhhhHHHHHH-HHHhccccccccc
Confidence            99999998888899999999999999999999999998 589999888887777666665555543 4455555443   


Q ss_pred             chhccHHHHHHHHhhhhccceecCCC--------CCceEeeeecccCCCCCCCcceEEeeCCCCeEEEEeccccCCCCee
Q 010607          231 EEVFNMETFKWSFGILFSRLVRLPSM--------DGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQV  302 (506)
Q Consensus       231 ~~~~t~~~f~WA~s~V~SRaf~~~~~--------~~~~~LVP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i~~GeEV  302 (506)
                      .+.++++.|.||+++|.||+|+.+..        ....+|+|++||+||+++. ....|+..++.+.+++.++|++||||
T Consensus       194 ~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~~~l~~~~~v~~geev  272 (472)
T KOG1337|consen  194 FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEAVELVAERDVSAGEEV  272 (472)
T ss_pred             cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCcEEEEEeeeecCCCeE
Confidence            23489999999999999999987653        2367999999999999988 45567766779999999999999999


Q ss_pred             ecccCCCChHHHHHhcCcccCCCCCCCCeEEEecccCCCcccHHHHHHHHHHCCCCCcceeeeecCCCcH-HHHHHHHHH
Q 010607          303 FISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPL-ELMAYAYLV  381 (506)
Q Consensus       303 fisYG~~sN~eLL~~YGFv~~~~~Np~D~v~l~l~l~~~d~~~~~k~~~L~~~gl~~~~~f~l~~~~~p~-~Ll~~lRl~  381 (506)
                      ||+||+++|++||++||||.+  +||+|.|.|.+.+...|..+..+...+..+++.....|.+...+.|. +++...+++
T Consensus       273 fi~YG~~~N~eLL~~YGFv~~--~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (472)
T KOG1337|consen  273 FINYGPKSNAELLLHYGFVEE--DNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPVSEMLLLFLLL  350 (472)
T ss_pred             EEecCCCchHHHHHhcCCCCC--CCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCchhhhhhhhhhh
Confidence            999999999999999999988  99999999999999999999999999999999998999888777653 333333333


Q ss_pred             cCCcchh--hhHHHHHHHHhccc-cccCCCCCchHHHHHHHHHHHH-HHHHHHhhhhhHhhcCCCCCCCCChhhhhhHHH
Q 010607          382 VSPPSMK--GKFEEMAAAASNKM-TSKKDIKCPEIDEQALQFILDS-CESSISKYSRFLQASGSMDLDTTSPKQLNRRVF  457 (506)
Q Consensus       382 ~~~~~~~--~~~~~l~~~~~~~~-~~~~~~~~~~~E~~~l~~L~~~-~~~~L~~y~Ttleed~~~l~d~~~~~~~~~~~~  457 (506)
                      .+..+..  ..+........... +......+.++|...+..+.+. |...+..+.++++++...+.+.-    ++   .
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~----l~---~  423 (472)
T KOG1337|consen  351 DALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNI----LS---K  423 (472)
T ss_pred             ccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhcccc----cc---h
Confidence            3332221  11111110001111 1122233478999999999999 88899999999977766665321    11   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhhh
Q 010607          458 LKQLAVDLCTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFV  502 (506)
Q Consensus       458 ~~rlA~~~R~~EKrIL~~~~~~l~~rl~~l~~~~~~~~~~~~~~~  502 (506)
                      +..++..++..+||||.+.+..++.+...+++..---......++
T Consensus       424 ~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~s~~~~~~~~~~~~~  468 (472)
T KOG1337|consen  424 LLELLEKLRTLEKRILEKSLKLLRSRLKLLHSLEYNQARLLQSLK  468 (472)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhhhhcccccccchhhhhhhh
Confidence            367899999999999999999999999999887744333333333

>KOG1338 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
2h21_A440 Structure Of Rubisco Lsmt Bound To Adomet Length = 4e-25
1mlv_A444 Structure And Catalytic Mechanism Of A Set Domain P 5e-25
3smt_A497 Crystal Structure Of Human Set Domain-Containing Pr 4e-21
3qxy_A449 Human Setd6 In Complex With Rela Lys310 Length = 44 2e-10
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 148/302 (49%), Gaps = 26/302 (8%)
Query: 78  TLQKWLSDSGLPPQKMAIQKVDVGER-GLVALKNIRKGEKLLFVPPSLVITADSKWSCPE 136
           T  KWL + G+   K  ++   V E  GLVALK+I + + +L VP  L I  D+      
Sbjct: 8   TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDA----VA 63
Query: 137 AGEVLKQCS-VPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLE 195
           A E+ + CS +  W  +  +LI E S E S  W +Y   LP++  S +YW+  EL   L+
Sbjct: 64  ASEIGRVCSELKPWLSVILFLIRERSREDSV-WKHYFGILPQETDSTIYWSEEELQE-LQ 121
Query: 196 ASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSR-LVRLP 254
            SQ+ +  +     V      L   I      LFP+ V  ++ F W+FGIL SR   RL 
Sbjct: 122 GSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPV-TLDDFFWAFGILRSRAFSRLR 180
Query: 255 SMDGRVALVPWADMLNHSCEVETF-LDYDKSSQGVVFTTDRQY--------QPGEQVFIS 305
           + +  + +VP AD++NHS  V T    Y+      +F+ D  +        + GEQV+I 
Sbjct: 181 NEN--LVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 238
Query: 306 YG-KKSNGELLLSYGFV-PREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECF 363
           Y   KSN EL L YGF+ P E  +   +  L L + +SD  + +KL+     G + +  F
Sbjct: 239 YDLNKSNAELALDYGFIEPNENRH---AYTLTLEISESDPFFDDKLDVAESNGFAQTAYF 295
Query: 364 PI 365
            I
Sbjct: 296 DI 297
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444 Back     alignment and structure
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497 Back     alignment and structure
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310 Length = 449 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 5e-76
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 8e-75
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 4e-73
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 1e-09
3qww_A433 SET and MYND domain-containing protein 2; methyltr 6e-08
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497 Back     alignment and structure
 Score =  246 bits (629), Expect = 5e-76
 Identities = 94/423 (22%), Positives = 172/423 (40%), Gaps = 23/423 (5%)

Query: 77  STLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCP- 135
             L KW S++G   +   +        GL A ++I+  E  L+VP  L++T +S  +   
Sbjct: 79  PDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVL 138

Query: 136 -EAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYL 194
                  +         LA +L+ E +   +S W  YI  LP +  + LY+   E+  YL
Sbjct: 139 GPLYSQDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTLPSEYDTPLYFEEDEVR-YL 196

Query: 195 EASQIRERAIERITNVIGTYNDLR--LRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVR 252
           +++Q       +  N    Y      ++       L  ++ F  E ++W+   + +R  +
Sbjct: 197 QSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQ 256

Query: 253 LPSMDG---RVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKK 309
           +P+ DG    +AL+P  DM NH+  + T   Y+           + ++ GEQ++I YG +
Sbjct: 257 IPTEDGSRVTLALIPLWDMCNHTNGLITT-GYNLEDDRCECVALQDFRAGEQIYIFYGTR 315

Query: 310 SNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITG 369
           SN E ++  GF      N  D V++ L + KSD+ Y  K E L + G+  S  F +  T 
Sbjct: 316 SNAEFVIHSGFFFDN--NSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTE 373

Query: 370 --WPLELMAYAY-LVVSPPSMKGKFEEMAAAASNKMTSKKDIK-CPEIDEQALQFILDSC 425
                +L+A+     ++   +K      +A          +     + + +   F+ D  
Sbjct: 374 PPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRA 433

Query: 426 ESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRILFRAQYILRRRLR 485
              +  Y   ++     D        L+ R    ++A+ L   E+ IL +A         
Sbjct: 434 SLLLKTYKTTIE----EDKSVLKNHDLSVR---AKMAIKLRLGEKEILEKAVKSAAVNRE 486

Query: 486 DIR 488
             R
Sbjct: 487 YYR 489
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440 Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 100.0
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 100.0
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 100.0
3qww_A433 SET and MYND domain-containing protein 2; methyltr 99.4
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 99.37
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 99.34
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 98.82
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 97.46
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 97.37
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 97.27
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 97.04
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 96.84
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 96.77
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 96.75
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 96.45
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 96.43
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 96.43
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 96.37
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 96.3
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 96.18
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 96.03
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 95.96
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 93.18
3db5_A151 PR domain zinc finger protein 4; methyltransferase 90.84
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 90.14
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 89.41
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 87.26
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 86.51
3dal_A196 PR domain zinc finger protein 1; methyltransferase 85.91
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 83.31
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 83.05
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 82.18
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 80.82
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.1e-68  Score=574.04  Aligned_cols=403  Identities=24%  Similarity=0.374  Sum_probs=336.3

Q ss_pred             cchhcHHHHHHHHHhCCCCCCCcEEEeeCCCcceEEEcccCCCCCEEEEcCCCCccccccccCCchhhhhhccCC---CC
Q 010607           71 DSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCS---VP  147 (506)
Q Consensus        71 ~~~~~~~~l~~Wl~~~G~~~~~v~i~~~~~~GrGlvA~~~I~~ge~ll~IP~~l~it~~~~~~~~~~~~~l~~~~---l~  147 (506)
                      .+.+.+.+|++|++++|+.+++|++..++++||||+|+++|++||+|++||.+++||.+++..+ .++.++....   ..
T Consensus        73 ~r~~~~~~ll~W~~~~G~~~~~v~i~~~~~~GrGl~A~~dI~~ge~ll~IP~~lllt~~~a~~s-~l~~~~~~~~~l~~~  151 (497)
T 3smt_A           73 KREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNS-VLGPLYSQDRILQAM  151 (497)
T ss_dssp             CGGGGHHHHHHHHHHTTCCCTTEEEEEETTTEEEEEESSCBCTTCEEEEEEGGGCEEHHHHHTS-TTHHHHHHCHHHHHC
T ss_pred             ccHHHHHHHHHHHHHCCCCccceEEEEcCCCccEEEEcccCCCCCEEEEcCHHHhCcHHhhhhh-hcccccccccccccc
Confidence            3456789999999999999999999999999999999999999999999999999999887532 2344433211   12


Q ss_pred             ChHHHHHHHHHhhhcCCCCCcHHHHHhcCCCCCCccccCHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 010607          148 DWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPD  227 (506)
Q Consensus       148 ~~~~Lal~Ll~E~~~g~~S~W~pYl~~LP~~~~~pl~w~~~el~~lL~gs~l~~~~~~~~~~~~~~y~~l~~~l~~~~p~  227 (506)
                      ++..|+++|++|+. ++.|+|+|||++||+.+++|++|+++|++ +|+||++...+.++.+.+.++|..+.. +++.+|+
T Consensus       152 ~~~~Lal~Ll~E~~-~~~S~w~pYl~~LP~~~~~pl~w~~eel~-~L~gt~l~~~v~~~~~~~~~~~~~~~~-~~~~~p~  228 (497)
T 3smt_A          152 GNIALAFHLLCERA-SPNSFWQPYIQTLPSEYDTPLYFEEDEVR-YLQSTQAIHDVFSQYKNTARQYAYFYK-VIQTHPH  228 (497)
T ss_dssp             HHHHHHHHHHHHHT-CTTCTTHHHHTTSCSCCCSGGGCCHHHHH-TTSSSSHHHHHHHHHHHHHHHHHHHHH-HC----C
T ss_pred             cHHHHHHHHHHHhc-CCCCchHHHHHhCCCCCCCCCcCCHHHHh-hccCCcHHHHHHHHHHHHHHHHHHHHH-HHHhCcc
Confidence            46689999999996 78999999999999999999999999998 699999999888877888889987654 6667777


Q ss_pred             CC--C-chhccHHHHHHHHhhhhccceecCCCCC---ceEeeeecccCCCCCCCcceEEeeCCCCeEEEEeccccCCCCe
Q 010607          228 LF--P-EEVFNMETFKWSFGILFSRLVRLPSMDG---RVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQ  301 (506)
Q Consensus       228 ~f--~-~~~~t~~~f~WA~s~V~SRaf~~~~~~~---~~~LVP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i~~GeE  301 (506)
                      .+  + ...+|++.|.||+++|+||+|.++..+|   ..+|||++||+||++.++. ..|+.+++.+++++.++|++|||
T Consensus       229 ~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~-~~~~~~~~~~~~~a~~~i~~Gee  307 (497)
T 3smt_A          229 ANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLIT-TGYNLEDDRCECVALQDFRAGEQ  307 (497)
T ss_dssp             CCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEE-EEEETTTTEEEEEESSCBCTTCE
T ss_pred             cccCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccc-eeeeccCCeEEEEeCCccCCCCE
Confidence            53  2 3568999999999999999999986544   4699999999999998743 45666788999999999999999


Q ss_pred             eecccCCCChHHHHHhcCcccCCCCCCCCeEEEecccCCCcccHHHHHHHHHHCCCCCcceeeeecC--CCcHHHHHHHH
Q 010607          302 VFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQIT--GWPLELMAYAY  379 (506)
Q Consensus       302 VfisYG~~sN~eLL~~YGFv~~~~~Np~D~v~l~l~l~~~d~~~~~k~~~L~~~gl~~~~~f~l~~~--~~p~~Ll~~lR  379 (506)
                      |||+||+++|++||++|||+++  +||+|.|.|.+.++.+|+++..|.++|+.+|+.....|.++.+  ++|.+|++++|
T Consensus       308 i~isYG~~~n~~Ll~~YGFv~~--~Np~D~v~l~l~~~~~d~l~~~K~~~L~~~gl~~~~~f~l~~~~~~~~~~Ll~~LR  385 (497)
T 3smt_A          308 IYIFYGTRSNAEFVIHSGFFFD--NNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLR  385 (497)
T ss_dssp             EEECCCSCCHHHHHHHHSCCCT--TCTTCEEEEEEECCTTSTTHHHHHHHHHHTTCCSEEEEEEESSSSCSCHHHHHHHH
T ss_pred             EEEeCCCCChHHHHHHCCCCCC--CCCCceEEEEecCCCcchhHHHHHHHHHHcCCCccceeeeecCCCCCCHHHHHHHH
Confidence            9999999999999999999998  9999999999999999999999999999999998888988764  57899999999


Q ss_pred             HHcCCcchhhhHHHHHHHHhccc--cc-cCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCCCCCCChhhhhhHH
Q 010607          380 LVVSPPSMKGKFEEMAAAASNKM--TS-KKDIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRV  456 (506)
Q Consensus       380 l~~~~~~~~~~~~~l~~~~~~~~--~~-~~~~~~~~~E~~~l~~L~~~~~~~L~~y~Ttleed~~~l~d~~~~~~~~~~~  456 (506)
                      +++++++++..+..- +...++.  ++ ...+++.+||.+++++|.+.|+.+|++|+||+++|+++|.+..    ++.  
T Consensus       386 vl~~~~~el~~~~~~-~~~~~~~~~l~~~~~piS~~nE~~v~~~L~~~~~~~L~~Y~TtieeDe~lL~~~~----ls~--  458 (497)
T 3smt_A          386 VFCMTEEELKEHLLG-DSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHD----LSV--  458 (497)
T ss_dssp             HHTCCHHHHHHHHHT-CSSSCTTTTTTCTTSCSCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHTTCTT----SCH--
T ss_pred             HHhCCHHHHHHHhcc-cchhhhhhhcccccCCCChhhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHhcCC----CCH--
Confidence            999999877554210 0000111  11 1235678999999999999999999999999999999886432    222  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010607          457 FLKQLAVDLCTSERRILFRAQYILRRRLRDIR  488 (506)
Q Consensus       457 ~~~rlA~~~R~~EKrIL~~~~~~l~~rl~~l~  488 (506)
                       ++++|+++|++||+||+++++.++.+..-++
T Consensus       459 -r~r~Av~vR~gEK~IL~~~l~~~~~~~~~~~  489 (497)
T 3smt_A          459 -RAKMAIKLRLGEKEILEKAVKSAAVNREYYR  489 (497)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4899999999999999999999998876544
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 506
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 7e-47
d2h2ja1176 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub 2e-18
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 3e-04
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  161 bits (408), Expect = 7e-47
 Identities = 81/262 (30%), Positives = 117/262 (44%), Gaps = 19/262 (7%)

Query: 78  TLQKWLSDSGLPPQKMAIQKVDVGE-RGLVALKNIRKGEKLLFVPPSLVITADSKWSCPE 136
           T  KWL + G+   K  ++   V E  GLVALK+I + + +L VP  L I  D+  +  E
Sbjct: 7   TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAV-AASE 65

Query: 137 AGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEA 196
            G V  +     W  +  +LI E S  + S W +Y   LP++  S +YW+  EL   L+ 
Sbjct: 66  IGRVCSEL--KPWLSVILFLIRERS-REDSVWKHYFGILPQETDSTIYWSEEELQ-ELQG 121

Query: 197 SQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSM 256
           SQ+ +  +     V      L   I      LFP+    ++ F W+FGIL SR       
Sbjct: 122 SQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDP-VTLDDFFWAFGILRSRAFSRLRN 180

Query: 257 DGRVALVPWADMLNHSC---------EVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYG 307
           +    +VP AD++NHS          EV+               +    + GEQV+I Y 
Sbjct: 181 ENL-VVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYD 239

Query: 308 -KKSNGELLLSYGFVPREGTNP 328
             KSN EL L YGF+     N 
Sbjct: 240 LNKSNAELALDYGFIE-PNENR 260
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 100.0
d2h2ja1176 RuBisCo LSMT C-terminal, substrate-binding domain 99.85
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 98.11
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 97.29
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 96.55
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 96.43
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 93.78
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 85.79
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 84.89
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 83.04
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=1.2e-43  Score=347.07  Aligned_cols=248  Identities=32%  Similarity=0.516  Sum_probs=207.7

Q ss_pred             hcHHHHHHHHHhCCCCCCCcEEEe-eCCCcceEEEcccCCCCCEEEEcCCCCccccccccCCchhhhhhccCCCCChHHH
Q 010607           74 ENASTLQKWLSDSGLPPQKMAIQK-VDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLL  152 (506)
Q Consensus        74 ~~~~~l~~Wl~~~G~~~~~v~i~~-~~~~GrGlvA~~~I~~ge~ll~IP~~l~it~~~~~~~~~~~~~l~~~~l~~~~~L  152 (506)
                      .+.+.|++|++++|+..+++.+.. ..+.||||||+++|++||+|++||.+++||.+++..+ ..++.+.  ...++..|
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~~~GrGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~-~~~~~~~--~~~~~~~l   79 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAAS-EIGRVCS--ELKPWLSV   79 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEETTEEEEECSSCCCTTCEEEEEEGGGCCSHHHHHTS-GGGTTTT--TSCHHHHH
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCCCceeEEEECCcCCCCCEEEEeChHHhccHHHhhhh-HHHHHHh--hcCcHHHH
Confidence            457889999999999988877654 4577999999999999999999999999998876432 2333332  35678899


Q ss_pred             HHHHHHhhhcCCCCCcHHHHHhcCCCCCCccccCHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCch
Q 010607          153 ATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEE  232 (506)
Q Consensus       153 al~Ll~E~~~g~~S~W~pYl~~LP~~~~~pl~w~~~el~~lL~gs~l~~~~~~~~~~~~~~y~~l~~~l~~~~p~~f~~~  232 (506)
                      +++|++|+. +..|.|++|+++||+...+|++|+.++++ .|+++.+...+....+.+..+|..+...+....++.++ .
T Consensus        80 ~~~l~~e~~-~~~s~~~~y~~~lp~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  156 (261)
T d2h2ja2          80 ILFLIRERS-REDSVWKHYFGILPQETDSTIYWSEEELQ-ELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFP-D  156 (261)
T ss_dssp             HHHHHHHHH-CTTCTTHHHHTTSCSCCSCGGGCCHHHHH-TTTTCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCC-S
T ss_pred             HHHHHHHHh-CCCCchhhhhhccccccCCcccCCHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-C
Confidence            999999985 88999999999999999999999999998 59999999998888888999999887766665555554 3


Q ss_pred             hccHHHHHHHHhhhhccceecCCCCCceEeeeecccCCCCCCCcceEEeeC---------CCCeEEEEeccccCCCCeee
Q 010607          233 VFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDK---------SSQGVVFTTDRQYQPGEQVF  303 (506)
Q Consensus       233 ~~t~~~f~WA~s~V~SRaf~~~~~~~~~~LVP~~Dm~NH~~~~~~~~~~d~---------~~~~~~l~a~r~i~~GeEVf  303 (506)
                      .++++.|.||+++|.||+|..+... ..+|+|++||+||++.+|+.+.++.         .++.++|+|.|+|++|||||
T Consensus       157 ~~~~~~~~~a~~~v~sr~~~~~~~~-~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~  235 (261)
T d2h2ja2         157 PVTLDDFFWAFGILRSRAFSRLRNE-NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVY  235 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHSBCCC----CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCE
T ss_pred             ccCHHHHHHHHHHhhcccccccccc-cccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEE
Confidence            5799999999999999999887543 5799999999999999998765542         34678999999999999999


Q ss_pred             cccCC-CChHHHHHhcCcccCCCCCCC
Q 010607          304 ISYGK-KSNGELLLSYGFVPREGTNPS  329 (506)
Q Consensus       304 isYG~-~sN~eLL~~YGFv~~~~~Np~  329 (506)
                      |+||+ ++|++||.+||||++ ++|||
T Consensus       236 isYG~~~~n~~ll~~yGFv~~-~~n~~  261 (261)
T d2h2ja2         236 IQYDLNKSNAELALDYGFIEP-NENRH  261 (261)
T ss_dssp             ECSCSSCCHHHHHHHSSCCCS-CGGGC
T ss_pred             EecCCCCCHHHHHHhCCCCCC-CCCCC
Confidence            99995 799999999999987 35886
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure