Citrus Sinensis ID: 010647

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----
MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRKWTQFDIEQPTSPSDTRQESHSAVSEMYPGVDEASVSLLSDLSSTTQPDQEACVSENEELLKTE
cccccccccccccccccccccccccHHHEEEEEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccHcEEcccHHEEEEEEHHccccccEccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEccccccEEEHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHEHcccccEEEEEccccccccccccccccHHHHHHccccHHHHHHHHcccccccccccccccccHHHHccc
mgeegmtsdvqqkaaktspkltvlPLIALIFYEvsggpfgvedsvkagggpllSLLGFLIFPLIWSIPEALITAELatsfpenggYVIWISsafgpfwgfqEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPfvvmgilsiprikprrwlvvdfkkvdwrgyFNSMFWNLNYWDKASTlagevenpsktfpKALLGAVVLVVSSYLIPllagtggltslssewsdgyFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFAsrskygtptlsiLCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRikkpdlhrpykvplqtfgVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLvhakdrkwtqfdieqptspsdtrqeshsavsemypgvdEASVSLLsdlssttqpdqeaCVSENEELLKTE
mgeegmtsdvqqkaaktspkltvLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIlsiprikprrwlVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDrkwtqfdieqptspsdtrqeshSAVSEMYPGVDEASVSLLSDLSsttqpdqeacvseneellkte
MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAgggpllsllgflifpliWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKallgavvlvvssylIPllagtggltslssEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTmlcllpavllvlvmclaslRTFIVSGGVIIVGFLLYPVLVHAKDRKWTQFDIEQPTSPSDTRQESHSAVSEMYPGVDEAsvsllsdlssTTQPDQEACVSENEELLKTE
********************LTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRKWTQFD**********************************************************
***********************LPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKD*****************************************************************
*****************SPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRKWTQFDIE*****************EMYPGVDEASVSLLSD***********************
***************KTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRKWTQFDIEQ*******************************************************
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRKWTQFDIEQPTSPSDTRQESHSAVSEMYPGVDEASVSLLSDLSSTTQPDQEACVSENEELLKTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query505 2.2.26 [Sep-21-2011]
Q9LH39479 Probable polyamine transp yes no 0.938 0.989 0.745 0.0
Q9C6S5495 Probable polyamine transp no no 0.895 0.913 0.573 1e-154
Q9FFL1490 Polyamine transporter RMV no no 0.871 0.897 0.580 1e-150
Q6Z8D0531 Polyamine transporter PUT no no 0.887 0.843 0.556 1e-148
A2X8M8531 Polyamine transporter PUT N/A no 0.887 0.843 0.556 1e-148
Q9C6S4482 Probable polyamine transp no no 0.865 0.906 0.561 1e-138
Q9LHN7478 Probable polyamine transp no no 0.902 0.953 0.471 1e-114
P37034464 Uncharacterized transport yes no 0.657 0.715 0.269 1e-16
Q5RKI7479 Solute carrier family 7 m yes no 0.605 0.638 0.255 6e-11
Q91WN3478 Solute carrier family 7 m yes no 0.625 0.661 0.258 2e-09
>sp|Q9LH39|PHSD_ARATH Probable polyamine transporter At3g19553 OS=Arabidopsis thaliana GN=At3g19553 PE=3 SV=1 Back     alignment and function desciption
 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/479 (74%), Positives = 414/479 (86%), Gaps = 5/479 (1%)

Query: 3   EEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFP 62
           EE + +D      K SPKLT+LPL+ LIFYEVSGGPFGVEDSVK+GGGPLL+LLGFLIFP
Sbjct: 4   EETIVNDENSSKPKPSPKLTLLPLVFLIFYEVSGGPFGVEDSVKSGGGPLLALLGFLIFP 63

Query: 63  LIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFL 122
           LIWSIPEAL+TAELATSFPENGGYV+WISSAFGPFWGFQEGFWKW SGV+DNALYPVLFL
Sbjct: 64  LIWSIPEALVTAELATSFPENGGYVVWISSAFGPFWGFQEGFWKWFSGVMDNALYPVLFL 123

Query: 123 DYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILS 182
           DYLKHS P+ + + AR+PALL IT +LTYLNYRGLHIVGFSAV L VFSLCPFVVM +L+
Sbjct: 124 DYLKHSFPVLDHVAARVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFSLCPFVVMALLA 183

Query: 183 IPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVL 242
           +P I+P+RWL VD +K++WRGYFN+MFWNLNYWDKASTLAGEV+ P KTFPKAL GAV+L
Sbjct: 184 VPNIRPKRWLFVDTQKINWRGYFNTMFWNLNYWDKASTLAGEVDRPGKTFPKALFGAVLL 243

Query: 243 VVSSYLIPLLAGTGGLTSLSS-EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAE 301
           V+ SYLIPL+AGTG L+S +S EWSDGYFAEVGMLIGG WLK WIQAA+AMSNLGLFEAE
Sbjct: 244 VMGSYLIPLMAGTGALSSSTSGEWSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLFEAE 303

Query: 302 MSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFLY 361
           MS DAFQLLGMSE+GMLPA FA RSKYGTPT+SILCSATGVIFLSWMSFQEI+EFLNFLY
Sbjct: 304 MSSDAFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLY 363

Query: 362 AIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVS 421
           A+GMLLEFAAF+KLRIKKPDLHRPY+VPL TFGV+MLCL P++L++LVM LA+ +TF++S
Sbjct: 364 ALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLIS 423

Query: 422 GGVIIVGFLLYPVLVHAKDRKWTQFDIEQPTSPSDTRQESHSAVSEMYPGVDEASVSLL 480
           G +I++GF LYP L   K+++W +F  E+    S    ES   + E +   DE++ SLL
Sbjct: 424 GVIIVLGFCLYPFLTLVKEKQWARFIPEETRPVSGVSSESQ--LDEEHG--DESAASLL 478
Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C6S5|PHSB_ARATH Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana GN=At1g31830 PE=2 SV=1 Back     alignment and function description
>sp|Q9FFL1|RMV1_ARATH Polyamine transporter RMV1 OS=Arabidopsis thaliana GN=RMV1 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z8D0|PUT1_ORYSJ Polyamine transporter PUT1 OS=Oryza sativa subsp. japonica GN=PUT1 PE=1 SV=1 Back     alignment and function description
>sp|A2X8M8|PUT1_ORYSI Polyamine transporter PUT1 OS=Oryza sativa subsp. indica GN=PUT1 PE=3 SV=1 Back     alignment and function description
>sp|Q9C6S4|PHSA_ARATH Probable polyamine transporter At1g31820 OS=Arabidopsis thaliana GN=At1g31820 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHN7|PHSC_ARATH Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1 Back     alignment and function description
>sp|P37034|Y1691_LEGPH Uncharacterized transporter lpg1691 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg1691 PE=3 SV=2 Back     alignment and function description
>sp|Q5RKI7|S7A13_RAT Solute carrier family 7 member 13 OS=Rattus norvegicus GN=Slc7a13 PE=2 SV=1 Back     alignment and function description
>sp|Q91WN3|S7A13_MOUSE Solute carrier family 7 member 13 OS=Mus musculus GN=Slc7a13 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
255573129493 amino acid transporter, putative [Ricinu 0.976 1.0 0.826 0.0
225428955504 PREDICTED: uncharacterized transporter l 0.962 0.964 0.843 0.0
296083070506 unnamed protein product [Vitis vinifera] 0.960 0.958 0.837 0.0
224105695457 neutral amino acid transport protein [Po 0.904 1.0 0.876 0.0
224060729461 neutral amino acid transport protein [Po 0.877 0.960 0.882 0.0
224084370429 neutral amino acid transport protein [Po 0.847 0.997 0.892 0.0
449438333486 PREDICTED: probable polyamine transporte 0.956 0.993 0.770 0.0
297834866479 amino acid permease family protein [Arab 0.932 0.983 0.747 0.0
15230886479 Amino acid permease family protein [Arab 0.938 0.989 0.745 0.0
357480679487 Neutral amino acid transport protein [Me 0.893 0.926 0.781 0.0
>gi|255573129|ref|XP_002527494.1| amino acid transporter, putative [Ricinus communis] gi|223533134|gb|EEF34892.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/497 (82%), Positives = 448/497 (90%), Gaps = 4/497 (0%)

Query: 1   MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLI 60
           MGEEG+  DV+ +  KT+PKLT+LPLIALIFY+VSGGPFGVED+VKAGGGPLLSLLGFLI
Sbjct: 1   MGEEGLPGDVKNRV-KTAPKLTLLPLIALIFYDVSGGPFGVEDTVKAGGGPLLSLLGFLI 59

Query: 61  FPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVL 120
           FPLIWS+PEAL+TAELATSFPENGGYVIWISSAFG FWGFQEGFWKW SGV+DNALYPVL
Sbjct: 60  FPLIWSVPEALVTAELATSFPENGGYVIWISSAFGSFWGFQEGFWKWFSGVMDNALYPVL 119

Query: 121 FLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGI 180
           FLDYLKHS PIFN LIARIPALLGIT +LTYLNYRGLHIVGFSAVSL  FSL PFVVMG+
Sbjct: 120 FLDYLKHSFPIFNRLIARIPALLGITASLTYLNYRGLHIVGFSAVSLAAFSLFPFVVMGM 179

Query: 181 LSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240
           LSIP+I+P++WLVVDF KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKAL GAV
Sbjct: 180 LSIPQIRPKQWLVVDFSKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALFGAV 239

Query: 241 VLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEA 300
           +LVVSSYL+PLLAGTG L + SSEWSDGYFAEVGMLIGG WLKWWIQAASAMSNLGLFEA
Sbjct: 240 ILVVSSYLVPLLAGTGALRTSSSEWSDGYFAEVGMLIGGVWLKWWIQAASAMSNLGLFEA 299

Query: 301 EMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFL 360
           EMSGDAFQLLGMSEMGMLPAIFA RSKYGTPT+SILCSATGV+FLSWMSFQEILEFLNFL
Sbjct: 300 EMSGDAFQLLGMSEMGMLPAIFAKRSKYGTPTISILCSATGVVFLSWMSFQEILEFLNFL 359

Query: 361 YAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIV 420
           YAIGMLLEFAAFIKLR+KKP+LHRPYKVPL+TFG T+LCL P++LLVLVMCLASLRTF+V
Sbjct: 360 YAIGMLLEFAAFIKLRVKKPELHRPYKVPLETFGATLLCLPPSILLVLVMCLASLRTFLV 419

Query: 421 SGGVIIVGFLLYPVLVHAKDRKWTQFDIEQPTSPSDTRQESHSAVSEMYPGVDEASVSLL 480
           SG VI +GF+LYP LV AKDR W +FD EQP  PS +   +    S+    VDEASV LL
Sbjct: 420 SGAVIFLGFILYPTLVQAKDRNWIKFDAEQPEVPSSSTVAADG--SQEVAVVDEASVMLL 477

Query: 481 SDLSSTTQPDQEACVSE 497
           SDL STT+ DQE   ++
Sbjct: 478 SDL-STTETDQEGHETQ 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428955|ref|XP_002263556.1| PREDICTED: uncharacterized transporter lpg1691 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083070|emb|CBI22474.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224105695|ref|XP_002313902.1| neutral amino acid transport protein [Populus trichocarpa] gi|222850310|gb|EEE87857.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224060729|ref|XP_002300260.1| neutral amino acid transport protein [Populus trichocarpa] gi|222847518|gb|EEE85065.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224084370|ref|XP_002335345.1| neutral amino acid transport protein [Populus trichocarpa] gi|222832591|gb|EEE71068.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449438333|ref|XP_004136943.1| PREDICTED: probable polyamine transporter At3g19553-like [Cucumis sativus] gi|449520126|ref|XP_004167085.1| PREDICTED: probable polyamine transporter At3g19553-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834866|ref|XP_002885315.1| amino acid permease family protein [Arabidopsis lyrata subsp. lyrata] gi|297331155|gb|EFH61574.1| amino acid permease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15230886|ref|NP_188589.1| Amino acid permease family protein [Arabidopsis thaliana] gi|75311166|sp|Q9LH39.1|PHSD_ARATH RecName: Full=Probable polyamine transporter At3g19553 gi|9294126|dbj|BAB01977.1| unnamed protein product [Arabidopsis thaliana] gi|332642736|gb|AEE76257.1| Amino acid permease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357480679|ref|XP_003610625.1| Neutral amino acid transport protein [Medicago truncatula] gi|355511960|gb|AES93583.1| Neutral amino acid transport protein [Medicago truncatula] gi|388517159|gb|AFK46641.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
TAIR|locus:2101520479 PUT5 "POLYAMINE UPTAKE TRANSPO 0.910 0.960 0.668 7.6e-167
TAIR|locus:2034451495 PUT2 "POLYAMINE UPTAKE TRANSPO 0.895 0.913 0.505 1.7e-123
TAIR|locus:2166354490 RMV1 "resistant to methyl viol 0.869 0.895 0.521 3.6e-121
UNIPROTKB|Q6Z8D0531 PUT1 "Polyamine transporter PU 0.855 0.813 0.511 9.5e-121
TAIR|locus:2034461482 PUT1 "POLYAMINE UPTAKE TRANSPO 0.881 0.923 0.488 9.4e-114
TAIR|locus:2086794478 PUT4 "POLYAMINE UPTAKE TRANSPO 0.766 0.809 0.464 3.2e-88
DICTYBASE|DDB_G0267504488 DDB_G0267504 "putative amino a 0.471 0.487 0.293 1.1e-23
TIGR_CMR|CBU_2020476 CBU_2020 "amino acid antiporte 0.544 0.577 0.255 1.8e-16
UNIPROTKB|F1PEX1503 SLC7A11 "Uncharacterized prote 0.609 0.612 0.266 2.5e-09
UNIPROTKB|P63235511 gadC "glutamic acid:4-aminobut 0.330 0.326 0.302 8.7e-09
TAIR|locus:2101520 PUT5 "POLYAMINE UPTAKE TRANSPORTER 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1623 (576.4 bits), Expect = 7.6e-167, P = 7.6e-167
 Identities = 310/464 (66%), Positives = 352/464 (75%)

Query:     1 MGEEG-MTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAXXXXXXXXXXXX 59
             MGEE  + +D      K SPKLT+LPL+ LIFYEVSGGPFGVEDSVK+            
Sbjct:     1 MGEEETIVNDENSSKPKPSPKLTLLPLVFLIFYEVSGGPFGVEDSVKSGGGPLLALLGFL 60

Query:    60 XXXXXWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPV 119
                  WSIPEAL+TAELATSFPENGGYV+WISSAFGPFWGFQEGFWKW SGV+DNALYPV
Sbjct:    61 IFPLIWSIPEALVTAELATSFPENGGYVVWISSAFGPFWGFQEGFWKWFSGVMDNALYPV 120

Query:   120 LFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179
             LFLDYLKHS P+ + + AR+PALL IT +LTYLNYRGLHIVGFSAV L VFSLCPFVVM 
Sbjct:   121 LFLDYLKHSFPVLDHVAARVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFSLCPFVVMA 180

Query:   180 ILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKXXXXX 239
             +L++P I+P+RWL VD +K++WRGYFN+MFWNLNYWDKASTLAGEV+ P KTFPK     
Sbjct:   181 LLAVPNIRPKRWLFVDTQKINWRGYFNTMFWNLNYWDKASTLAGEVDRPGKTFPKALFGA 240

Query:   240 XXXXXXXXXIPXXXXXXXXXXXXX-EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLF 298
                      IP              EWSDGYFAEVGMLIGG WLK WIQAA+AMSNLGLF
Sbjct:   241 VLLVMGSYLIPLMAGTGALSSSTSGEWSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLF 300

Query:   299 EAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLN 358
             EAEMS DAFQLLGMSE+GMLPA FA RSKYGTPT+SILCSATGVIFLSWMSFQEI+EFLN
Sbjct:   301 EAEMSSDAFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLN 360

Query:   359 FLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTXXXXXXXXXXXXXXXXXXXRTF 418
             FLYA+GMLLEFAAF+KLRIKKPDLHRPY+VPL TFGV+                   +TF
Sbjct:   361 FLYALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTF 420

Query:   419 IVSGGVIIVGFLLYPVLVHAKDRKWTQFDIEQPTSP-SDTRQES 461
             ++SG +I++GF LYP L   K+++W +F I + T P S    ES
Sbjct:   421 LISGVIIVLGFCLYPFLTLVKEKQWARF-IPEETRPVSGVSSES 463
GO:0005886 "plasma membrane" evidence=ISM
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
GO:0015203 "polyamine transmembrane transporter activity" evidence=IGI;IDA
GO:0015846 "polyamine transport" evidence=IDA
TAIR|locus:2034451 PUT2 "POLYAMINE UPTAKE TRANSPORTER 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166354 RMV1 "resistant to methyl viologen 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z8D0 PUT1 "Polyamine transporter PUT1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2034461 PUT1 "POLYAMINE UPTAKE TRANSPORTER 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086794 PUT4 "POLYAMINE UPTAKE TRANSPORTER 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267504 DDB_G0267504 "putative amino acid permease" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_2020 CBU_2020 "amino acid antiporter" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEX1 SLC7A11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P63235 gadC "glutamic acid:4-aminobutyrate antiporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2X8M8PUT1_ORYSINo assigned EC number0.55600.88710.8436N/Ano
Q9LH39PHSD_ARATHNo assigned EC number0.74530.93860.9895yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 2e-32
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 1e-28
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 1e-22
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 4e-18
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 5e-17
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 2e-16
TIGR00910507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 8e-16
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 9e-16
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 9e-16
pfam00324473 pfam00324, AA_permease, Amino acid permease 1e-10
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 6e-09
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 4e-08
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 8e-07
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 3e-04
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 4e-04
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 4e-04
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
 Score =  128 bits (324), Expect = 2e-32
 Identities = 103/410 (25%), Positives = 177/410 (43%), Gaps = 26/410 (6%)

Query: 47  AGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWK 106
           A    L  L+  +I   +     AL  AEL+++ P  GG   +   A GP  GF  G+  
Sbjct: 44  APAAILAWLIAGIIILFL-----ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLY 98

Query: 107 WLSGVLDNALYPVLFLDYLKHSLPIFNLLIAR----IPALLGITGALTYLNYRGLHIVGF 162
            L+ V+  A   +    YL +  P   LL       I   L +   LT LN RG+     
Sbjct: 99  LLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAK 158

Query: 163 SAVSLLVFSLCPFVVMGILSIPRIKPRRW-LVVDFKKVDW-----RGYFNSMFWNLNYWD 216
               + +  +   ++  IL +         L   F                 F+    ++
Sbjct: 159 INSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFE 218

Query: 217 KASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGL--TSLSSEWSDGYFAEVG 274
             +TLA EV+NP +T P+A++ ++++V+  Y++  L   G L    L++       A   
Sbjct: 219 AIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAA 278

Query: 275 MLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRS-KYGTPTL 333
           +  GG W    I   + +S  G   A +   +  L  M+  G+LP  FA  + K  TP +
Sbjct: 279 LFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVI 338

Query: 334 SILCSA------TGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYK 387
           +++ +         +  LS ++F  ++   +  + I  LL   A + LR KKPDL RP++
Sbjct: 339 ALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFR 398

Query: 388 VPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVH 437
           +PL    +  +  + AVLL+L    AS    ++ G ++I G ++  +LV+
Sbjct: 399 LPL--APLIPILGIVAVLLLLYALYASGLPPLLLGVILIAGGIIIYLLVY 446

Length = 466
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 505
PRK15049499 L-asparagine permease; Provisional 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.97
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.93
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.89
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.89
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.88
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.87
PHA02764399 hypothetical protein; Provisional 99.86
PRK10483414 tryptophan permease; Provisional 99.86
PRK09664415 tryptophan permease TnaB; Provisional 99.85
PRK15132403 tyrosine transporter TyrP; Provisional 99.85
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.82
TIGR00814397 stp serine transporter. The HAAAP family includes 99.81
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.79
PRK13629443 threonine/serine transporter TdcC; Provisional 99.78
PF03845320 Spore_permease: Spore germination protein; InterPr 99.51
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.35
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.23
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.23
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.19
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.15
PLN03074473 auxin influx permease; Provisional 99.12
COG3949349 Uncharacterized membrane protein [Function unknown 99.07
PTZ00206467 amino acid transporter; Provisional 99.07
COG1457442 CodB Purine-cytosine permease and related proteins 99.05
PRK11375484 allantoin permease; Provisional 99.04
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.95
PRK11017404 codB cytosine permease; Provisional 98.84
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.84
PRK15433439 branched-chain amino acid transport system 2 carri 98.48
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.43
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.39
KOG1305411 consensus Amino acid transporter protein [Amino ac 98.39
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.35
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.3
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 98.3
TIGR00813407 sss transporter, SSS family. have different number 98.3
PRK15419502 proline:sodium symporter PutP; Provisional 98.28
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.17
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.04
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.03
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.03
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.96
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.9
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.84
PRK00701439 manganese transport protein MntH; Reviewed 97.8
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 97.74
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.44
PRK12488549 acetate permease; Provisional 97.39
PRK10745 622 trkD potassium transport protein Kup; Provisional 97.1
PRK10484523 putative transporter; Provisional 97.05
PLN00148 785 potassium transporter; Provisional 96.95
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 96.86
KOG2466572 consensus Uridine permease/thiamine transporter/al 96.75
PLN00149 779 potassium transporter; Provisional 96.73
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.67
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 96.63
PRK09395551 actP acetate permease; Provisional 96.57
PLN00151 852 potassium transporter; Provisional 96.4
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 96.31
PLN00150 779 potassium ion transporter family protein; Provisio 96.06
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 95.66
PF1390651 AA_permease_C: C-terminus of AA_permease 95.01
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 94.97
KOG4303524 consensus Vesicular inhibitory amino acid transpor 94.87
PRK09950506 putative transporter; Provisional 93.44
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 92.6
COG4147529 DhlC Predicted symporter [General function predict 92.29
PRK09928679 choline transport protein BetT; Provisional 88.29
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 87.46
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 87.1
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 87.08
COG1292537 BetT Choline-glycine betaine transporter [Cell env 85.16
PF12794340 MscS_TM: Mechanosensitive ion channel inner membra 84.28
COG4858226 Uncharacterized membrane-bound protein conserved i 84.2
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-56  Score=455.52  Aligned_cols=392  Identities=15%  Similarity=0.162  Sum_probs=317.3

Q ss_pred             ccCCCccchhhHHHHHHHHhcc-CCcCchh-hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHh
Q 010647           15 AKTSPKLTVLPLIALIFYEVSG-GPFGVED-SVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS   92 (505)
Q Consensus        15 ~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~-~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~   92 (505)
                      +++||+++.+++.++++|.++| |+|..++ .+.. +||.. +++|++++++ .++.+++++||++++|++||.|+|+++
T Consensus        24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~-il~~li~~i~-~~~v~~slaELas~~P~aGg~y~y~~~  100 (499)
T PRK15049         24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPAL-ALVYLICGLF-SFFILRALGELVLHRPSSGSFVSYARE  100 (499)
T ss_pred             hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHH-HHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            3599999999999999999999 6775555 4555 89954 7899999995 999999999999999999999999999


Q ss_pred             hhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010647           93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL  172 (505)
Q Consensus        93 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i  172 (505)
                      .+||.+||++||.+|+.|....+......+.+..++ +.++ ..+.+.+.++++++++.+|++|+|..++++.++..+++
T Consensus       101 ~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki  178 (499)
T PRK15049        101 FLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-GVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKV  178 (499)
T ss_pred             HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998876666666666666543 2111 23455667778888999999999999999999999998


Q ss_pred             HHHHHHHHHHhcc---ccCC--c---ccc----cccCCcChhHHH---HHHHHHhcchHhhhhhhccccCcCcchhHHHH
Q 010647          173 CPFVVMGILSIPR---IKPR--R---WLV----VDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALL  237 (505)
Q Consensus       173 ~~~~~~~i~~~~~---~~~~--~---~~~----~~~~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~  237 (505)
                      +.++++++.++..   .++.  +   +..    ....+.++.+.+   ..++|+|.|+|.+++++||+|||+|++|||+.
T Consensus       179 ~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~  258 (499)
T PRK15049        179 LAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAIN  258 (499)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHH
Confidence            7766655544321   1111  1   110    011123443333   34689999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 010647          238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM  317 (505)
Q Consensus       238 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~  317 (505)
                      .++..++++|++..++....+|+++.....+|+.+++++.+.+....++.+.++++.+++.++.+++.||++|+|||||.
T Consensus       259 ~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~  338 (499)
T PRK15049        259 SVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGS  338 (499)
T ss_pred             HHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999887767789999999999888889999999999999999999999999999999999


Q ss_pred             ChhhhhccCCCCCChHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCCCcc
Q 010647          318 LPAIFASRSKYGTPTLSILCSATGVIFLSW-------MSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPD---LHRPYK  387 (505)
Q Consensus       318 lP~~~~~~~k~~~P~~ai~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~  387 (505)
                      +|++|+|+||+++|++|++++.+++++..+       ..++.+.++.++...+.|++++++.+++|++.++   .+||||
T Consensus       339 lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~  418 (499)
T PRK15049        339 APSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFK  418 (499)
T ss_pred             cCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCc
Confidence            999999999999999999998887654321       2378899999999999999999999999876433   357999


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHH
Q 010647          388 VPLQTFGVTMLCLLPAVLLVLVMCL  412 (505)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~  412 (505)
                      .|.+++.. +++++..++......+
T Consensus       419 ~~~~p~~~-~~~l~~~~~~~~~~~~  442 (499)
T PRK15049        419 LPGAPFTS-WLTLLFLLSVLVLMAF  442 (499)
T ss_pred             ccCccHHH-HHHHHHHHHHHHHHHH
Confidence            99876444 4444444444444443

>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1 Back     alignment and domain information
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
4dji_A511 Structure Of Glutamate-Gaba Antiporter Gadc Length 4e-08
3ncy_A445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 1e-04
3lrb_A445 Structure Of E. Coli Adic Length = 445 4e-04
>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc Length = 511 Back     alignment and structure 
Iteration: 1

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 142/357 (39%), Gaps = 35/357 (9%)
Query: 65  WSIPEALITAELATSFP-ENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLF-- 121
           W IP  L  AE+AT    E GG   W+S+  GP WGF    + +L   +     P+L+  
Sbjct: 53  WFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQ--IAIGFIPMLYFV 110
Query: 122 LDYLKHSL--PIFNL-LIARIPALLGITGALTYLNYRG------LHIVGFSAVSLL-VFS 171
           L  L + L  P  N   I +  A L I  AL    + G      +  VGF A  LL  F 
Sbjct: 111 LGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFI 170
Query: 172 LCPFVVMGILSIPRIK---PRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENP 228
           L     + + S   +      +    DF KV     F +   +    + ++T   E+ NP
Sbjct: 171 LIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNP 230
Query: 229 SKTFPKXXXXXXXXXXXXXXIPXXXXXXXXXXXXXEWSDGYFAEVGMLIGGFW--LKWWI 286
            + +P               +                S G      +L+      ++W +
Sbjct: 231 GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTV 290
Query: 287 QAASAMSNLGLFEAEMS----GDAFQLLGMSEMGMLPAIFASRSKYGTP-TLSI---LCS 338
           +  SA+  LG+  AE++    G +  +   ++  +LPA FA  +K G P TL I   + +
Sbjct: 291 RVISALLLLGVL-AEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVIT 349
Query: 339 ATGVIFLS------WMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVP 389
           +  +I L+       MSF   L     +Y     + F  +I L +K PDL R + +P
Sbjct: 350 SIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIP 406
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 5e-67
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 4e-41
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 2e-27
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
 Score =  223 bits (570), Expect = 5e-67
 Identities = 94/494 (19%), Positives = 176/494 (35%), Gaps = 46/494 (9%)

Query: 6   MTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIW 65
           M + VQ   AK   +LT+L   A+           V +           +   L+  ++W
Sbjct: 1   MATSVQTGKAK---QLTLLGFFAITA----SMVMAVYEYPTFATSGFSLVFFLLLGGILW 53

Query: 66  SIPEALITAELATSFP-ENGGYVIWISSAFGPFWGFQEGFWKWLS---GVLDNALYPVLF 121
            IP  L  AE+AT    E GG   W+S+  GP WGF    + +L    G +    + +  
Sbjct: 54  FIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGA 113

Query: 122 LDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVG-FSAVSLLVFSLCPFVVMGI 180
           L Y+     +    I +  A L I  AL    + G       + V      L P  ++  
Sbjct: 114 LSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIA 173

Query: 181 LSIPRIKPRRWLVV---------DFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKT 231
           L+   +     + +         DF KV     F +   +    + ++T   E+ NP + 
Sbjct: 174 LAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRD 233

Query: 232 FPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGF-----WLKWWI 286
           +P A+L  +V  +    +  L+    +       S G      +L+        W    I
Sbjct: 234 YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVI 293

Query: 287 QAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLS 346
            A   +  L    + + G +  +   ++  +LPA FA  +K G P   ++          
Sbjct: 294 SALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIAL 353

Query: 347 ----------WMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVT 396
                      MSF   L     +Y     + F  +I L +K PDL R + +P       
Sbjct: 354 IILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKL 413

Query: 397 MLCLLPAVLLVLVMCLA----------SLRTFIVSGGVIIVGFLLYPVLVHAKDRKWTQF 446
           ++ ++  +  ++   ++          S   ++    V  +  L  P +++A   +  + 
Sbjct: 414 VVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKA 473

Query: 447 DIEQPTSPSDTRQE 460
           +      P +++  
Sbjct: 474 NTGVTLEPINSQNA 487
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query505
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.35
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 98.1
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 97.75
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.48
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 84.39
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=1.2e-53  Score=436.42  Aligned_cols=414  Identities=18%  Similarity=0.255  Sum_probs=352.2

Q ss_pred             ccCCCccchhhHHHHHHHHhcc-CCcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhh
Q 010647           15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA   93 (505)
Q Consensus        15 ~~~~r~l~~~~~~~~~~~~i~g-~~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~   93 (505)
                      ++.||+++.++++++.+++++| |++..+..+.. +||. .+++|++++++ .++.+++++|+++++|++||.|+|+++.
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~-~G~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~   80 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLAS-TGGI-AIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRC   80 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHH-HCTH-HHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHH-hhhH-HHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence            3568999999999999999999 67777777776 7885 57999999985 8999999999999999999999999999


Q ss_pred             hCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010647           94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC  173 (505)
Q Consensus        94 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~  173 (505)
                      +||.+||+.||.+++++....+......+++++.++|....+++..+++++++++++.+|++|+|..++++.+.+.++++
T Consensus        81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~  160 (445)
T 3l1l_A           81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI  160 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            99999999999999999998899999999999988887666677888889999999999999999999999999999998


Q ss_pred             HHHHHHHHHhccccCCcccccccCCc------ChhHHHHHHHHHhcchHhhhhhhccccCcCcchhHHHHHHHHHHHHHH
Q 010647          174 PFVVMGILSIPRIKPRRWLVVDFKKV------DWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSY  247 (505)
Q Consensus       174 ~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~~~ip~ai~~~~~~~~~~y  247 (505)
                      .++++++.++.+.+++++.+. +.+.      ++...+...+|+|.|+|.+++++||+|||+|++||+++.+..+++++|
T Consensus       161 ~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y  239 (445)
T 3l1l_A          161 PIVGIAVFGWFWFRGETYMAA-WNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCY  239 (445)
T ss_dssp             HHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhcccc-cCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHH
Confidence            888887777766555443221 1111      223334556899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCcCccccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhccCC
Q 010647          248 LIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSK  327 (505)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~k  327 (505)
                      ++..++.....|+++....++|+.+++++..+++...++.+..+++.+++.++.+.+.+|++++|||||.+|++|+|+||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~  319 (445)
T 3l1l_A          240 VLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNK  319 (445)
T ss_dssp             HHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCT
T ss_pred             HHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCC
Confidence            99999999999988877778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccCchhHHHHHH
Q 010647          328 YGTPTLSILCSATGVIFLSWM--------SFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLC  399 (505)
Q Consensus       328 ~~~P~~ai~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  399 (505)
                      +++|+++++++.+++.++.+.        .++.+.++.++...+.|.+.+++.+++|+|+| .+   |.|..+    ++.
T Consensus       320 ~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~---r~~~~~----~~~  391 (445)
T 3l1l_A          320 AGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK---ARPAYL----AVT  391 (445)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG---GCTTTH----HHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc---ccchhH----HHH
Confidence            999999999999877665532        36889999999999999999999999988776 22   333333    445


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010647          400 LLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKD  440 (505)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  440 (505)
                      .++.+++.+..+..++....++..++++|+++|...+++++
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~  432 (445)
T 3l1l_A          392 TIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH  432 (445)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            55666666667777788888889999999998887665544
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query505
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 96.66
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.66  E-value=0.32  Score=46.94  Aligned_cols=53  Identities=26%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             chhhHHHHHHHHhcc-C-CcCchhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010647           22 TVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELA   77 (505)
Q Consensus        22 ~~~~~~~~~~~~i~g-~-~~~~~~~~~~~~G~~~~i~~~ii~~~~~~~~~a~~~~el~   77 (505)
                      +..+.+.-++|..+| | +.-.|....+.+|. ..++-+++..+++.+|..  +.|++
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGg-aFlipY~~~l~l~gvPll--~lE~~   60 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGG-AFMIPYIIAFLLVGIPLM--WIEWA   60 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTH-HHHHHHHHHHHHTHHHHH--HHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCc-hhHHHHHHHHHHHHHHHH--HHHHH
Confidence            344555557777767 3 45667777663554 456677766655455544  35554