Citrus Sinensis ID: 010650

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----
MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYESVSSKFHAK
cccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEEccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHccccccccccccccccccccEEEEcccccccEEEEEEcccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccEEEEEEcccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHccc
cHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccEEEEcccccEEEEEcccccEEEEEEEEcccHHHcccccccHHHHHHccccccEccEcHHHHHHHHHHcccEEEEEEccccEEEEEEEEHHHHHHHHHHHHHHHHcEcccHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHEccHHHccccccHHHcccccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHccccccccccccccccEccccEEEcccccccEEEEEEEccccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEEEEccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccc
MYRATVSRLGSLKGRLGNFQAMRYAtsgaaavrpsspgffswltgeqssslpsldtplegvsfppslpdfvepgkvkvttlengiriasetsvspaasIGLYLdfgsvyetpsscgasnLLEKMAFkstknrshLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELgelhnnpqGLLLEAIHSTgyagalgnpllapesalnrldgTILEEIVAENFTAPRMVLAAsgvdldellpiaepllsdlprlppptepksvyiggdyrqqadspeTHIALAFevpggwlkdkEAIILTVLQVLmggggsfsaggpgkgmhTRLYLRVLNEYQQIQSFSAFNSIFNNTGLfgiyactgsdfvSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIisspltmasygdvinvpgyesvsskfhak
myratvsrlgslkgrlGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGiriasetsvspaaSIGLYLDFGSVYETPSSCGASNLLEKMAFkstknrshlriVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEpllsdlprlppPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILiatpkqvtqvQLNRAkeatksavlmnlesrvivsediGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYESVSSKFHAK
MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEpllsdlprlpppTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMggggsfsaggpgkgMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYESVSSKFHAK
*****************NFQAMRYA*************FFSWL***************************V*PGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLL***************YIGGDY*******ETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGY**********
**************************************************************************KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLL*****************GGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAG****GMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYESVSSKFH**
MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYES********
MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYESVSSK*H**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYESVSSKFHAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query505 2.2.26 [Sep-21-2011]
P29677504 Mitochondrial-processing N/A no 0.998 1.0 0.655 0.0
Q9ZU25503 Probable mitochondrial-pr yes no 0.992 0.996 0.635 1e-178
O04308499 Probable mitochondrial-pr no no 0.984 0.995 0.656 1e-173
P97997474 Mitochondrial-processing N/A no 0.803 0.856 0.332 3e-53
O75439489 Mitochondrial-processing yes no 0.817 0.844 0.313 1e-50
Q3SZ71490 Mitochondrial-processing yes no 0.817 0.842 0.320 2e-50
Q5REK3489 Mitochondrial-processing yes no 0.817 0.844 0.311 5e-50
Q9CXT8489 Mitochondrial-processing yes no 0.817 0.844 0.311 2e-49
Q9DC61524 Mitochondrial-processing no no 0.934 0.900 0.318 3e-49
Q03346489 Mitochondrial-processing no no 0.817 0.844 0.311 6e-49
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/505 (65%), Positives = 412/505 (81%), Gaps = 1/505 (0%)

Query: 1   MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEG 60
           MYR   SRL SLK R GN    R+++S A A +PS  G FSW+TG+ SSS+  LD PL  
Sbjct: 1   MYRCASSRLSSLKARQGNRVLTRFSSSAAVATKPSG-GLFSWITGDTSSSVTPLDFPLND 59

Query: 61  VSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNL 120
           V   P LPD+VEP K ++TTL NG+++ASE SV+PAASIGLY+D GS+YETP+S GA++L
Sbjct: 60  VKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHL 119

Query: 121 LEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVR 180
           LE+MAFKST NRSHLRIVRE+EAIGG++ ASASRE M Y++DALKTYVP+MVE+L DCVR
Sbjct: 120 LERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVR 179

Query: 181 NPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDG 240
           NP FLDWEV E+L K+K+E+ E   NPQ LLLEA+HS GYAG  GN L+A E+ +NRL+ 
Sbjct: 180 NPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINRLNS 239

Query: 241 TILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQ 300
           T+LEE VAEN+TAPRMVLAASGV+ +E L +AEPLLSDLP++    EPK VY+GGDYR Q
Sbjct: 240 TVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDYRCQ 299

Query: 301 ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNE 360
           AD+  TH ALAFEVPGGW+ +KE++ LTVLQ+LMGGGGSFSAGGPGKGM++RLYLRVLN+
Sbjct: 300 ADAEMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYLRVLNQ 359

Query: 361 YQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAK 420
           Y QI +FSAF+SI+NNTGLFGI   T SDF  +AVD+ V+ELI +A P +V QVQLNRAK
Sbjct: 360 YPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAK 419

Query: 421 EATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSP 480
           +ATKSA+LMNLESR++ SEDIGRQ+LTYGER  V+ FL  ++ ++  DI ++ QK+ISSP
Sbjct: 420 QATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLISSP 479

Query: 481 LTMASYGDVINVPGYESVSSKFHAK 505
           LTMASYGDV+++P Y++VSS+F +K
Sbjct: 480 LTMASYGDVLSLPSYDAVSSRFRSK 504
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|P97997|MPPA_BLAEM Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1 Back     alignment and function description
>sp|O75439|MPPB_HUMAN Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2 Back     alignment and function description
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|Q5REK3|MPPB_PONAB Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1 Back     alignment and function description
>sp|Q9DC61|MPPA_MOUSE Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1 Back     alignment and function description
>sp|Q03346|MPPB_RAT Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
449462912505 PREDICTED: mitochondrial-processing pept 1.0 1.0 0.772 0.0
225442426506 PREDICTED: mitochondrial-processing pept 1.0 0.998 0.760 0.0
356526071505 PREDICTED: mitochondrial-processing pept 0.998 0.998 0.760 0.0
255549792492 mitochondrial processing peptidase alpha 0.974 1.0 0.740 0.0
356522822505 PREDICTED: mitochondrial-processing pept 0.998 0.998 0.754 0.0
357513541507 Mitochondrial-processing peptidase subun 1.0 0.996 0.745 0.0
224059160507 predicted protein [Populus trichocarpa] 1.0 0.996 0.726 0.0
356556561491 PREDICTED: mitochondrial-processing pept 0.972 1.0 0.734 0.0
356547368491 PREDICTED: mitochondrial-processing pept 0.972 1.0 0.732 0.0
225445041506 PREDICTED: mitochondrial-processing pept 1.0 0.998 0.721 0.0
>gi|449462912|ref|XP_004149179.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] gi|449489994|ref|XP_004158479.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/505 (77%), Positives = 442/505 (87%)

Query: 1   MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEG 60
           M+R   SRL SLK    N  A R+ATS A A RP+S GFFSWLTGE+SSSLP ++ PL G
Sbjct: 1   MHRIAGSRLRSLKNHAANLGASRFATSSAVAARPTSGGFFSWLTGERSSSLPPMEIPLSG 60

Query: 61  VSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNL 120
           ++ PP LPD VE  K K+TTL NG+RIASETS +PAASIG+YLD GS+YETP S GAS+L
Sbjct: 61  ITLPPPLPDQVETSKTKITTLPNGVRIASETSSNPAASIGIYLDCGSIYETPLSSGASHL 120

Query: 121 LEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVR 180
           LE++AFKST NRSHLRIVREVEAIGG+  ASASREQMGY+FDALKTYVPEMVELLVDCVR
Sbjct: 121 LERLAFKSTTNRSHLRIVREVEAIGGNTGASASREQMGYTFDALKTYVPEMVELLVDCVR 180

Query: 181 NPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDG 240
           NPVFLDWE+NEEL+KLK+E+GEL NNPQGLLLEA+HS GY+GAL NPL+APE AL+RLDG
Sbjct: 181 NPVFLDWEINEELQKLKAEIGELANNPQGLLLEAVHSAGYSGALANPLVAPEFALSRLDG 240

Query: 241 TILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQ 300
           TILEE +AEN+TA RMVLAASGVD +ELL I+EPLLSDLP +P    P+SVY+GGDYR+Q
Sbjct: 241 TILEEFIAENYTASRMVLAASGVDHEELLSISEPLLSDLPNVPGVKVPESVYVGGDYRRQ 300

Query: 301 ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNE 360
           AD   TH+ALAFEVPGGW K+K+AI+LTVLQ+LMGGGGSFSAGGPGKGMH+RLYLRVLNE
Sbjct: 301 ADCGSTHVALAFEVPGGWHKEKDAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNE 360

Query: 361 YQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAK 420
           YQQIQSFSAFNSIFNNTGLFGIYA TGS+FV+KAVD+   ELI IATP QV+QVQLNRAK
Sbjct: 361 YQQIQSFSAFNSIFNNTGLFGIYASTGSNFVAKAVDIAASELISIATPGQVSQVQLNRAK 420

Query: 421 EATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSP 480
           E+TKSAVLMNLESR+IVSEDIGRQILTYGERK V+ FL  ++ ITL+DITNIAQK+ISSP
Sbjct: 421 ESTKSAVLMNLESRMIVSEDIGRQILTYGERKPVEHFLKAVDSITLNDITNIAQKVISSP 480

Query: 481 LTMASYGDVINVPGYESVSSKFHAK 505
           LTMASYGDVINVP YESV+S FH K
Sbjct: 481 LTMASYGDVINVPTYESVNSLFHRK 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442426|ref|XP_002283426.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297743169|emb|CBI36036.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356526071|ref|XP_003531643.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|255549792|ref|XP_002515947.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223544852|gb|EEF46367.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356522822|ref|XP_003530042.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|357513541|ref|XP_003627059.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355521081|gb|AET01535.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|224059160|ref|XP_002299745.1| predicted protein [Populus trichocarpa] gi|222847003|gb|EEE84550.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356556561|ref|XP_003546593.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356547368|ref|XP_003542085.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
TAIR|locus:2088309499 MPPalpha "mitochondrial proces 0.984 0.995 0.610 4.9e-156
TAIR|locus:2034096503 AT1G51980 [Arabidopsis thalian 0.990 0.994 0.595 2.5e-152
GENEDB_PFALCIPARUM|PFE1155c534 PFE1155c "mitochondrial proces 0.869 0.822 0.320 3.8e-53
UNIPROTKB|Q8I3N3534 PFE1155c "Mitochondrial proces 0.869 0.822 0.320 3.8e-53
ASPGD|ASPL0000062345570 AN1104 [Emericella nidulans (t 0.4 0.354 0.348 7.6e-52
UNIPROTKB|F1SB55489 PMPCB "Uncharacterized protein 0.835 0.862 0.302 3.3e-47
UNIPROTKB|I3LHS1489 LOC100624058 "Uncharacterized 0.835 0.862 0.302 3.3e-47
UNIPROTKB|F1PUK2513 PMPCB "Uncharacterized protein 0.920 0.906 0.295 4.2e-47
ZFIN|ZDB-GENE-030131-1269454 uqcrc2b "ubiquinol-cytochrome 0.833 0.927 0.298 4.2e-47
UNIPROTKB|F1P582457 UQCRC2 "Uncharacterized protei 0.819 0.905 0.297 5.4e-47
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
 Identities = 307/503 (61%), Positives = 368/503 (73%)

Query:     1 MYRATVSRLGSLKGRLG-NFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLE 59
             MYR   SR  +LKG L  NF+A RYA+S A A   SS    SWL+G  SSSLPS++ PL 
Sbjct:     1 MYRTAASRAKALKGILNHNFRASRYASSSAVATSSSSS---SWLSGGYSSSLPSMNIPLA 57

Query:    60 GVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASN 119
             GVS PP L D VEP K+K TTL NG+ IA+E S +PAASIGLY+D GS+YETP   GA++
Sbjct:    58 GVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATH 117

Query:   120 LLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCV 179
             LLE+MAFKST NRSH R+VRE+EAIGG+  ASASREQMGY+ DALKTYVPEMVE+L+D V
Sbjct:   118 LLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSV 177

Query:   180 RNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLD 239
             RNP FLDWEVNEELRK+K E+GE   NP G LLEA+HS GY+GAL NPL APESA+  L 
Sbjct:   178 RNPAFLDWEVNEELRKVKVEIGEFATNPMGFLLEAVHSAGYSGALANPLYAPESAITGLT 237

Query:   240 GTILEEIVAENFTAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQ 299
             G +LE  V EN+TA RMVLAASGVD +ELL + E             EPKS Y+GGD+RQ
Sbjct:   238 GEVLENFVFENYTASRMVLAASGVDHEELLKVVEPLLSDLPNVPRPAEPKSQYVGGDFRQ 297

Query:   300 QADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLN 359
                   TH ALAFEVPG W  +KEAII TVLQ+LM              MH+ LYLR+LN
Sbjct:   298 HTGGEATHFALAFEVPG-WNNEKEAIIATVLQMLMGGGGSFSAGGPGKGMHSWLYLRLLN 356

Query:   360 EYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRA 419
             ++QQ QS +AF S+FNNTGLFGIY CT  +F S+ ++LV  E+  +A  K V Q  L+RA
Sbjct:   357 QHQQFQSCTAFTSVFNNTGLFGIYGCTSPEFASQGIELVASEMNAVADGK-VNQKHLDRA 415

Query:   420 KEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISS 479
             K ATKSA+LMNLESR+I +EDIGRQILTYGERK VDQFL  ++ +TL DI +   K+I+ 
Sbjct:   416 KAATKSAILMNLESRMIAAEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSKVITK 475

Query:   480 PLTMASYGDVINVPGYESVSSKF 502
             PLTMA++GDV+NVP Y+SVS +F
Sbjct:   476 PLTMATFGDVLNVPSYDSVSKRF 498
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005741 "mitochondrial outer membrane" evidence=IDA
GO:0005743 "mitochondrial inner membrane" evidence=IDA
GO:0005758 "mitochondrial intermembrane space" evidence=IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE1155c PFE1155c "mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I3N3 PFE1155c "Mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062345 AN1104 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1SB55 PMPCB "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LHS1 LOC100624058 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUK2 PMPCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1269 uqcrc2b "ubiquinol-cytochrome c reductase core protein IIb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P582 UQCRC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3SZ71MPPB_BOVIN3, ., 4, ., 2, 4, ., 6, 40.32050.81780.8428yesno
P29677MPPA_SOLTU1, ., 1, 0, ., 2, ., 20.65540.99801.0N/Ano
Q5REK3MPPB_PONAB3, ., 4, ., 2, 4, ., 6, 40.31150.81780.8445yesno
Q4W6B5MPPB_DICDI3, ., 4, ., 2, 4, ., 6, 40.30500.82170.8848yesno
P11914MPPA_YEAST3, ., 4, ., 2, 4, ., 6, 40.31670.81980.8589yesno
O75439MPPB_HUMAN3, ., 4, ., 2, 4, ., 6, 40.31370.81780.8445yesno
Q9CXT8MPPB_MOUSE3, ., 4, ., 2, 4, ., 6, 40.31150.81780.8445yesno
Q9ZU25MPPA1_ARATH3, ., 4, ., 2, 4, ., 6, 40.63560.99200.9960yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.640.991
3rd Layer3.4.240.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 2e-55
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 1e-40
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 1e-31
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  191 bits (486), Expect = 2e-55
 Identities = 104/417 (24%), Positives = 191/417 (45%), Gaps = 26/417 (6%)

Query: 75  KVKVTTLENGIRIAS-ETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS 133
            ++V TL NG+R+ +     +P  S+ +++  GS  E     G ++ LE MAFK T    
Sbjct: 16  GLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLP 75

Query: 134 HLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEEL 193
              +    E +GG + A  S +   Y    L   + + ++LL D + NP F + EV  E 
Sbjct: 76  SAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREK 135

Query: 194 RKLKSELGELHNNPQGLLLEAIHSTGYAG-ALGNPLLAPESALNRLDGTILEEIVAENFT 252
             +  E+    ++P  L  E +    Y    LG P+L  E ++  +    L++   + + 
Sbjct: 136 GVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQ 195

Query: 253 APRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPKSV-YIGG------DYRQQADSP 304
              MVL   G VD +E++ + E    DLP   PP +      +G       +  +Q D  
Sbjct: 196 PDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLE 255

Query: 305 ETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQI 364
           +  +AL +  P       +     +L   + GGG  S          RL+  +  +    
Sbjct: 256 QAWLALGYPGPD--YDSPDDYAALLLLNGLLGGGFSS----------RLFQELREKRGLA 303

Query: 365 QSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLV---VRELILIATPKQVTQVQLNRAKE 421
            S S+F+   +++GLF IYA T  +   K  +LV   ++ L         T+ +L+ AK+
Sbjct: 304 YSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLK-GPFTEEELDAAKQ 362

Query: 422 ATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIIS 478
                +L++L+S   ++E +G+ +L  G   ++++ L  +E +TL+D+  +A+K+++
Sbjct: 363 LLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLA 419

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 505
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
PRK15101961 protease3; Provisional 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.97
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.93
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.91
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 99.9
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.89
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.88
PTZ004321119 falcilysin; Provisional 99.88
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.87
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.85
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.84
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 99.82
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 99.31
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.64
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 98.33
PHA03081 595 putative metalloprotease; Provisional 98.16
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 97.93
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 97.72
KOG0960 467 consensus Mitochondrial processing peptidase, beta 96.23
KOG2067472 consensus Mitochondrial processing peptidase, alph 95.75
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 95.58
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 87.69
KOG2583 429 consensus Ubiquinol cytochrome c reductase, subuni 86.87
PF0985131 SHOCT: Short C-terminal domain; InterPro: IPR01864 83.5
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-83  Score=595.13  Aligned_cols=445  Identities=45%  Similarity=0.700  Sum_probs=418.0

Q ss_pred             CCCCccCCCCCCCCCCCCCCCCCceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCC
Q 010650           52 PSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKN  131 (505)
Q Consensus        52 ~~l~~pl~~~~~p~~~~~~~~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~  131 (505)
                      .|+.+++|    |+...+. ++..+++++|+||+||++++++++.++++++|++|+++|.+...|++||+|+|+|++|.+
T Consensus         6 ~~l~e~lP----p~~~~d~-~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~   80 (472)
T KOG2067|consen    6 MPLIEVLP----PKSTADP-EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTER   80 (472)
T ss_pred             CccccCCC----CcccCCc-ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccC
Confidence            45556655    2212233 556889999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHH
Q 010650          132 RSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLL  211 (505)
Q Consensus       132 ~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~  211 (505)
                      ++..++..+||.+||+++|+++||.+.|.+++.+++++.++++|+|.+.+|.|++|+++.++..+.-|+.+...+|+.++
T Consensus        81 ~~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL  160 (472)
T KOG2067|consen   81 FSSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLL  160 (472)
T ss_pred             CcHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc-CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcCCCHHhHHHHHHhhcCCCCCCCCCC--CC
Q 010650          212 LEAIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPT--EP  288 (505)
Q Consensus       212 ~~~~~~~~~-~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G~~~~~~~~~i~~~~~~l~~~~~~~--~~  288 (505)
                      .+++|.++| +++++.+.+++.+.+++|+.+.|.+|.+.+|+|.+|++..||++||++++.+++||+.||+...++  .+
T Consensus       161 ~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~  240 (472)
T KOG2067|consen  161 TEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDES  240 (472)
T ss_pred             HHHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccc
Confidence            999999999 889999999999999999999999999999999999999999999999999999999999854444  35


Q ss_pred             CCccCCCceEecCC-------CCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhc
Q 010650          289 KSVYIGGDYRQQAD-------SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEY  361 (505)
Q Consensus       289 ~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~  361 (505)
                      +.+|+|+...++.|       .+-+||.++|++++  ++++|.+++.+|+.+||||+|||||||||||+||||.++.+++
T Consensus       241 ~aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry  318 (472)
T KOG2067|consen  241 KAQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRY  318 (472)
T ss_pred             hhhccccccccCCCCccccCccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhh
Confidence            67899997665543       36799999999997  6889999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeecccCCcceeEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHH
Q 010650          362 QQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDI  441 (505)
Q Consensus       362 g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~  441 (505)
                      +|+|++.|++..|.++|+|+|+.+++|+.+.++++.+.+++..+.. | ++++|++|||+++++.+++++|++...++++
T Consensus       319 ~wv~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDv  396 (472)
T KOG2067|consen  319 HWVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDV  396 (472)
T ss_pred             HHHHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHH
Confidence            9999999999999999999999999999999999999999999876 4 9999999999999999999999999999999


Q ss_pred             HHHHHHhCCcCCHHHHHHHHccCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCCHHHHHhHhhcC
Q 010650          442 GRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYESVSSKFHAK  505 (505)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~~~~p~~~~~~~~~~~~  505 (505)
                      +||++.+|.++.++++++.|+++|++||.+++++++..+++++..||...+|+|+.|..+++++
T Consensus       397 GRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~~  460 (472)
T KOG2067|consen  397 GRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSSG  460 (472)
T ss_pred             hHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcCCceeccCCcccCCcchhhhhhhcccC
Confidence            9999999999999999999999999999999999999999999999999999999999998864

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 2e-47
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 6e-45
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 4e-44
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 8e-43
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 1e-42
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 4e-42
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-41
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-41
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 2e-41
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 9e-40
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 1e-39
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 1e-39
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 2e-34
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 5e-34
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 5e-29
1ezv_B352 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 4e-07
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 7e-07
1kb9_A431 Yeast Cytochrome Bc1 Complex Length = 431 7e-06
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 3e-05
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 3e-05
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 211/423 (49%), Gaps = 9/423 (2%)
Query: 73  PG--KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTK 130
           PG   +++T L NG+ IAS  + SPA+ IG+++  GS YET ++ G ++LL   +  +TK
Sbjct: 21  PGAEDLEITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTK 80
Query: 131 NRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVN 190
             S  RI R +EA+GGS+   ++RE+M Y  + L+ +V  ++E L++    P F  WEV 
Sbjct: 81  GASSFRITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVT 140
Query: 191 EELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAEN 250
           +   +LK +      +PQ  +LE +H+  Y  AL NPL  P+  + ++    L   V  N
Sbjct: 141 DLQPQLKVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNN 200
Query: 251 FTAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADSPETHIAL 310
           FT+ RM L   GV   +L  +AE            +  K+ Y GG+ R+Q      H A+
Sbjct: 201 FTSARMALVGIGVKHSDLKQVAE-QFLNIRSGAGTSSAKATYWGGEIREQNGHSLVHAAV 259
Query: 311 AFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSFSAF 370
             E  G  +   EA   +VLQ ++              + ++LY  V     Q    SAF
Sbjct: 260 VTE--GAAVGSAEANAFSVLQHVL---GAGPLIKRGSSVTSKLYQGVAKATTQPFDASAF 314
Query: 371 NSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN 430
           N  ++++GLFG Y  + +    + +   + +L   A    VT+  + +AK   K+  LM+
Sbjct: 315 NVNYSDSGLFGFYTISQAAHAGEVIRAAMNQL-KAAAQGGVTEEDVTKAKNQLKATYLMS 373
Query: 431 LESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVI 490
           +E+   +  +IG + L  G   +       ++ +T  D+ N A+K +S   +MA+ GD+ 
Sbjct: 374 VETAQGLLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAASGDLG 433
Query: 491 NVP 493
           + P
Sbjct: 434 STP 436
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 352 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-170
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-166
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 1e-154
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 1e-153
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-138
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-106
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-101
3eoq_A406 Putative zinc protease; two similar domains of bet 6e-90
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 3e-55
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 3e-52
3gwb_A434 Peptidase M16 inactive domain family protein; pept 2e-48
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 5e-35
3go9_A492 Insulinase family protease; IDP00573, structural g 1e-28
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 3e-18
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 1e-04
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 7e-16
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 3e-07
3ih6_A197 Putative zinc protease; bordetella pertussis toham 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 4e-07
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  486 bits (1253), Expect = e-170
 Identities = 124/442 (28%), Positives = 211/442 (47%), Gaps = 9/442 (2%)

Query: 57  PLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCG 116
            ++    P  +P    P  ++ T L NG+ IAS  + +PA+ IGL++  GS YE  ++ G
Sbjct: 7   KVKATEAPAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLG 64

Query: 117 ASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLV 176
            S+LL   +  +TK  S  +I R +EA+GG +  +++RE M Y+ + L+  V  ++E L+
Sbjct: 65  TSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLL 124

Query: 177 DCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALN 236
           +    P F  WEV     +L+ +      NPQ  ++E +H+  Y  AL N L  P+  + 
Sbjct: 125 NVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIG 184

Query: 237 RLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGD 296
           ++    L + V  +FT+ RM L   GV    L  +AE  L+        +  K+ Y GG+
Sbjct: 185 KVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGG-LGLSGAKAKYHGGE 243

Query: 297 YRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLR 356
            R+Q      H AL  E     +   EA   +VLQ ++G G        G    + LY  
Sbjct: 244 IREQNGDSLVHAALVAESAA--IGSAEANAFSVLQHVLGAG---PHVKRGSNATSSLYQA 298

Query: 357 VLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQL 416
           V     Q    SAFN+ ++++GLFG Y  + +      +     ++  IA    ++   +
Sbjct: 299 VAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDV 357

Query: 417 NRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKI 476
             AK   K+  LM++ES     +++G Q L  G        L  ++ +   D+ N A+K 
Sbjct: 358 QAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKF 417

Query: 477 ISSPLTMASYGDVINVPGYESV 498
           +S   +MA+ G++ + P  + +
Sbjct: 418 VSGRKSMAASGNLGHTPFIDEL 439
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query505
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.97
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.91
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.26
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 97.98
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 97.9
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 97.88
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 97.84
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 97.82
3eoq_A406 Putative zinc protease; two similar domains of bet 97.82
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 97.8
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 97.79
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 97.76
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 97.75
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 97.68
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.65
3go9_A492 Insulinase family protease; IDP00573, structural g 96.41
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=5.8e-64  Score=520.48  Aligned_cols=427  Identities=31%  Similarity=0.524  Sum_probs=394.6

Q ss_pred             CceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeec
Q 010650           74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS  153 (505)
Q Consensus        74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~  153 (505)
                      |.++.++|+||++|++.+.+.+.+++++++++|+++|++...|++||++||+|+||++++..++.+.++..|+.++++|+
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~   83 (475)
T 1hr6_A            4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (475)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence            57899999999999988877899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCCh
Q 010650          154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE  232 (505)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~  232 (505)
                      ++++.|.+++++++++.+|+++.+++.+|.|++++|+++|..+.+|+++..++|...+.+.++..+| +++|+++.+|+.
T Consensus        84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~  163 (475)
T 1hr6_A           84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (475)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence            9999999999999999999999999999999999999999999999999889999999999999999 999999999999


Q ss_pred             hhhcCCCHHHHHHHHHhhcCCCCeEEEEcCCCHHhHHHHHHhhcCCCCCCCCC-CCCCCccCCCceEec------CCCCc
Q 010650          233 SALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPP-TEPKSVYIGGDYRQQ------ADSPE  305 (505)
Q Consensus       233 ~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G~~~~~~~~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~~~------~~~~~  305 (505)
                      +.|++++.++|++||+++|+|+||+++|+|++++++.++++++|+.||....+ ..+.+.+.++..++.      .+.++
T Consensus       164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (475)
T 1hr6_A          164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL  243 (475)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred             HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence            99999999999999999999999999999999999999999999999865543 212334444444444      46788


Q ss_pred             eEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEE
Q 010650          306 THIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYAC  385 (505)
Q Consensus       306 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~  385 (505)
                      +++.++|++++  .++++..++.||+.||+++++||||||||||.++||++||++.|++|+++++...+.+.|.|.+++.
T Consensus       244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~  321 (475)
T 1hr6_A          244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS  321 (475)
T ss_dssp             EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred             eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence            99999999775  5778999999999999999999999999999999999999999999999998887778899999999


Q ss_pred             eCcchHHHHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHc
Q 010650          386 TGSDFVSKAVDLVVRELILIAT---PKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLE  462 (505)
Q Consensus       386 ~~p~~~~~~~~~~~~~l~~~~~---~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  462 (505)
                      ++|++..++++.+.+++.++.+   .| +|++||+++|+.++.++....+++..+++.++++++.+|.+.+.+++.+.|+
T Consensus       322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~  400 (475)
T 1hr6_A          322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIE  400 (475)
T ss_dssp             ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            9999999999999999999987   66 9999999999999999999999999999999987766787767888999999


Q ss_pred             cCCHHHHHHHHHHHhcC----------CcEEEEEcCCCCCCCHHHHHhHhh
Q 010650          463 HITLDDITNIAQKIISS----------PLTMASYGDVINVPGYESVSSKFH  503 (505)
Q Consensus       463 ~vT~~di~~~a~~~l~~----------~~~~~v~G~~~~~p~~~~~~~~~~  503 (505)
                      +||++||++++++|+..          +++++++|+...+|+++++.+.+.
T Consensus       401 ~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~  451 (475)
T 1hr6_A          401 DLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG  451 (475)
T ss_dssp             TCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence            99999999999999975          799999999999999999998875
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 505
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 1e-38
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 5e-37
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 1e-36
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 5e-35
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 3e-34
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 5e-32
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 4e-28
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 3e-27
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 1e-23
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 2e-22
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 1e-21
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2e-17
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 2e-17
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 4e-14
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  137 bits (346), Expect = 1e-38
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 6/210 (2%)

Query: 289 KSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKG 348
           K+ Y GG+ R+Q      H AL  E     +   EA   +VLQ ++G G     G     
Sbjct: 1   KAKYHGGEIREQNGDSLVHAALVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---N 55

Query: 349 MHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATP 408
             + LY  V     Q    SAFN+ ++++GLFG Y  + +      +     ++  IA  
Sbjct: 56  ATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIA-Q 114

Query: 409 KQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDD 468
             ++   +  AK   K+  LM++ES     +++G Q L  G        L  ++ +   D
Sbjct: 115 GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADAD 174

Query: 469 ITNIAQKIISSPLTMASYGDVINVPGYESV 498
           + N A+K +S   +MA+ G++ + P  + +
Sbjct: 175 VINAAKKFVSGRKSMAASGNLGHTPFIDEL 204
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query505
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.97
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.96
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.96
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.94
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.88
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.81
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.6
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 99.35
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.17
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.65
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.54
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 98.51
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 98.43
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.37
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.33
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.32
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.25
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.2
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 98.08
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 98.05
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.01
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 97.93
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 97.92
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 97.66
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.47
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 96.92
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 95.42
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 93.42
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 81.8
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-36  Score=278.38  Aligned_cols=209  Identities=32%  Similarity=0.536  Sum_probs=200.3

Q ss_pred             CceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeec
Q 010650           74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS  153 (505)
Q Consensus        74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~  153 (505)
                      +.++..+|+||++|++.++.+|.++|++++++|+++|++...|++||++||+|+|+++++..++.+.++..|+.++++++
T Consensus         6 ~~~~~~~L~NGl~v~~~~~~~p~v~i~~~v~~Gs~~e~~~~~G~ahlle~l~~~gt~~~s~~~i~~~~~~~G~~~n~~t~   85 (219)
T d1ppjb1           6 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTST   85 (219)
T ss_dssp             CCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHCTTSCBSSSCHHHHHHHHHHTTCEEEEEEC
T ss_pred             CceeEEECCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCccHHHHHHHHHhhccccchhHHHHHHHHHhccchhhhhh
Confidence            46799999999999988888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhcCCCCCCCCCCChh
Q 010650          154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPES  233 (505)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (505)
                      ++++.|++++++++++.+++++.+++.+|.|++++++++++.+..++.....+|..++.+.++..+|.++++++..|+.+
T Consensus        86 ~d~t~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~~~~~i~~e~~~~~~~p~~~~~~~l~~~~f~~~~~~~~~g~~~  165 (219)
T d1ppjb1          86 RENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDY  165 (219)
T ss_dssp             SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHTHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCCGG
T ss_pred             hheeeeeeeeecchhHHHHHHHHHhccCCcchhhhhhhhhHHHHHHHHHHhhccchHHHHHHHhhcccccccCCCcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999996689999999999


Q ss_pred             hhcCCCHHHHHHHHHhhcCCCCeEEEEcCCCHHhHHHHHHhhcCCCCCCC
Q 010650          234 ALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLP  283 (505)
Q Consensus       234 ~l~~lt~~~l~~f~~~~~~~~~~~l~i~G~~~~~~~~~i~~~~~~l~~~~  283 (505)
                      .+++++.++|++||+++|.|+||+|+++|++++++.++++++|+ ++.+.
T Consensus       166 ~l~~it~~~l~~f~~~~y~p~n~~lv~~Gv~~~~l~~l~e~~~~-~~~g~  214 (219)
T d1ppjb1         166 RIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGL  214 (219)
T ss_dssp             GTTTCCHHHHHHHHHHHSCGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC
T ss_pred             HHhcCCHHHHHHHHHHhCCcccEEEEEEcCCHHHHHHHHHHhcC-CCCCC
Confidence            99999999999999999999999999999999999999999985 65554
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure