Citrus Sinensis ID: 010652
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 505 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SH69 | 487 | 6-phosphogluconate dehydr | yes | no | 0.954 | 0.989 | 0.883 | 0.0 | |
| Q9FFR3 | 487 | 6-phosphogluconate dehydr | no | no | 0.954 | 0.989 | 0.883 | 0.0 | |
| Q94KU2 | 537 | 6-phosphogluconate dehydr | N/A | no | 0.958 | 0.901 | 0.847 | 0.0 | |
| Q94KU1 | 483 | 6-phosphogluconate dehydr | N/A | no | 0.938 | 0.981 | 0.771 | 0.0 | |
| Q9LI00 | 480 | 6-phosphogluconate dehydr | yes | no | 0.934 | 0.983 | 0.766 | 0.0 | |
| Q9FWA3 | 486 | 6-phosphogluconate dehydr | no | no | 0.938 | 0.975 | 0.756 | 0.0 | |
| Q2R480 | 508 | 6-phosphogluconate dehydr | no | no | 0.938 | 0.933 | 0.761 | 0.0 | |
| P21577 | 471 | 6-phosphogluconate dehydr | yes | no | 0.922 | 0.989 | 0.566 | 1e-154 | |
| P80859 | 469 | 6-phosphogluconate dehydr | yes | no | 0.920 | 0.991 | 0.525 | 1e-145 | |
| P52208 | 482 | 6-phosphogluconate dehydr | N/A | no | 0.914 | 0.958 | 0.536 | 1e-139 |
| >sp|Q9SH69|6PGD1_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64190 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 SWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|Q9FFR3|6PGD2_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana GN=At5g41670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 461/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME+ ALSRIGLAGLAVMGQNLALN+A+KGFPISVYNRTTSKVDETLDRA EG+LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRSVIILVKAG+PVDQTI+ALSE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A +KGLLYLGMGVSGGEEGAR+GPSLMPGGSF AYNN++DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN+GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKD+YG+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+++ + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GW+LN GE+ARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP+FA+EMVQRQAAWRRV
Sbjct: 361 GWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q94KU2|6PGD2_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia oleracea GN=pgdP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/484 (84%), Positives = 443/484 (91%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A S+IGL GLAVMGQNLALN+AEKGFPISVYNRT SKVDETLDRA EG LPL+GHYTPR
Sbjct: 47 AASQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPR 106
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
DFVLSI+RPRS++ILVKAGSPVDQTIA+L+ M PGD IIDGGNEWY NTERR+ +A
Sbjct: 107 DFVLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSN 166
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184
GLLYLGMGVSGGEEGAR GPSLMPGG F+AY+NI+ IL+KVAAQVDDGPCVTYIGEGGSG
Sbjct: 167 GLLYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQVDDGPCVTYIGEGGSG 226
Query: 185 NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244
NFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN EL +IFDEWNK ELESFLVEITADIF
Sbjct: 227 NFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIF 286
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
KVKD+ +G LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE
Sbjct: 287 KVKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREN 346
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AAK+L+ AG+K+EV + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS E GW+L
Sbjct: 347 AAKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDL 406
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N GELARIWKGGCIIRAVFLD IK+AYQRNPNLASLVVDPEFA+EMVQRQAAWRRVVGLA
Sbjct: 407 NLGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLA 466
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLPA 484
+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRD FGAHTYER+D PGS+HTEW+KL
Sbjct: 467 VSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLAR 526
Query: 485 RLVP 488
+ P
Sbjct: 527 KSDP 530
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q94KU1|6PGD1_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea GN=pgdC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/476 (77%), Positives = 419/476 (88%), Gaps = 2/476 (0%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G + P F
Sbjct: 5 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 64
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V SIQ+PR +I+LVKAG+PVD TI LS ++ GDCIIDGGNEWY NTERR +KGL
Sbjct: 65 VNSIQKPRVIIMLVKAGAPVDATIKTLSAYLEKGDCIIDGGNEWYENTERREKAMEEKGL 124
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
LYLGMGVSGGEEGAR+GPS+MPGGSF+AY NI DIL KVAAQVD GPCVTYIG+GGSGNF
Sbjct: 125 LYLGMGVSGGEEGARNGPSMMPGGSFDAYKNIEDILTKVAAQVDSGPCVTYIGKGGSGNF 184
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKM+HNGIEYGDMQLI+EAYDVLK VG LSN EL E+F EWN+GEL SFL+EITADIF +
Sbjct: 185 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELKEVFAEWNRGELLSFLIEITADIFGI 244
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KD+ GEG LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTIA+SLD R+LSGLK+ER +AA
Sbjct: 245 KDDKGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDSRFLSGLKDERVEAA 304
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
KV K G++D + + VDKK+LIDDVRQALYA+KICSYAQGMNL+R+KS EK W+L
Sbjct: 305 KVFKAGGVEDTLSD--QVVDKKKLIDDVRQALYAAKICSYAQGMNLIRAKSVEKEWDLKL 362
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GELARIWKGGCIIRA+FLDRIKKAY RNPNL++L++DPEF++EM++RQ+AWRRVV LAI
Sbjct: 363 GELARIWKGGCIIRAMFLDRIKKAYDRNPNLSNLLIDPEFSKEMIERQSAWRRVVCLAIG 422
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
AGISTPGM +SL+YFD+YRR RLPANLVQAQRD FGAHTYERID PG+FHTEW KL
Sbjct: 423 AGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDIPGAFHTEWFKL 478
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9LI00|6PGD1_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japonica GN=G6PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/479 (76%), Positives = 415/479 (86%), Gaps = 7/479 (1%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A++RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+ RA EG LP+ G + P
Sbjct: 2 AVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPA 61
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
FV SIQ+PR VI+LVKAG+PVDQTIA L+ H+ GDCIIDGGNEWY NTERR ++
Sbjct: 62 SFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEER 121
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGS 183
GLLYLGMGVSGGEEGAR+GPSLMPGGSFEAY I DIL KVAAQV D GPCVTYIG+GGS
Sbjct: 122 GLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGS 181
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
GNFVKMVHNGIEYGDMQLISEAYDVLK VG L+N+EL ++F EWNKGEL SFL+EITADI
Sbjct: 182 GNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADI 241
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
F +KD+ G G LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTI ASLD R+LSGLK+ER
Sbjct: 242 FSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERV 301
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+AAKV + D N+ VDK +LI+DVRQALYASKICSYAQGMN++++KS EKGW+
Sbjct: 302 EAAKVFQ----GDFSSNL--PVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWS 355
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN GELARIWKGGCIIRA+FLDRIKKAY RN +LA+L+VDPEFA+E++ RQAAWRRVV L
Sbjct: 356 LNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCL 415
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
AI+ G+STPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER+D PGSFHTEW K+
Sbjct: 416 AINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKI 474
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9FWA3|6GPD3_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 3 OS=Arabidopsis thaliana GN=At3g02360 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/477 (75%), Positives = 412/477 (86%), Gaps = 3/477 (0%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G + P F
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESF 65
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V SIQ+PR +I+LVKAGSPVDQTI LS ++ GDCI+DGGNEWY NTERR ++ G
Sbjct: 66 VKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGF 125
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGSGN 185
LYLGMGVSGGEEGAR+GPS+MPGGS+EAY NI DI+ KVAAQV D GPCVTYIG+GGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGN 185
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245
FVKMVHNGIEYGDMQLI+EAYDVLK VG LSN EL +F +WNKGELESFLVEITADIF
Sbjct: 186 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADIFG 245
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
+KD+ G+G LVDK+LDKTGMKGTGKWTVQQAAELSV APTI +SLD R+LSGLK+ER +A
Sbjct: 246 IKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERVQA 305
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 365
AKV K G D + + VDKK+L+DDVR+ALYASKICSYAQGMNL+R+KS EKGW L
Sbjct: 306 AKVFKAGGFGDILTDQ--KVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAI 425
GELARIWKGGCIIRA+FLDRIK+AY RN LA+L+VDPEFA+E+++RQ+AWRRVV LAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 426 SAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
++GISTPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER D GSFHTEW K+
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKI 480
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q2R480|6PGD2_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sativa subsp. japonica GN=G6PGH2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/478 (76%), Positives = 408/478 (85%), Gaps = 4/478 (0%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
RIGLAGLA MGQNLALN+AEKGFPISVYNRT +KVD T+ RA EG LP+ GH PR FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
LS+ RPR+V++LV+AG VD TI AL ++ GD I+DGGNEWY NTERRI EA+ +G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
YLGMGVSGGEEGAR+GPSLMPGG +AYNNIRDIL+K AAQ +DG CVT++G GG+GNFV
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGNFV 202
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLI+EAYDVL+ VGGLSN+E+A++F EWN+GELESFLVEITADIF V
Sbjct: 203 KMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTVA 262
Query: 248 DEY---GEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
D G G LVDKILDKTGMKGTGKWTVQQAAEL++AAPTIAASLD RYLSGLK+ER
Sbjct: 263 DPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERVA 322
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AA VL+ G+ + ++VDKK L+D VRQALYASKICSYAQGMNLLR+KS EKGWNL
Sbjct: 323 AAGVLEAEGMPSGLLET-INVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N ELARIWKGGCIIRA FLDRIKKAY RNP LA+L+VD EFAREMVQRQ AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+ AGISTPGM ASLSYFDTYR +RLPANL+QAQRDLFGAHTYERIDRPGSFHTEWTKL
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKL 499
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P21577|6PGD_SYNE7 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4 | Back alignment and function description |
|---|
Score = 543 bits (1400), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/478 (56%), Positives = 343/478 (71%), Gaps = 12/478 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTGHYTP 63
AL + GL GLAVMG+NLALN+ GF ++VYNRT K + + DRA + +P Y+
Sbjct: 2 ALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVP---AYSL 58
Query: 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123
DFV S++RPR ++++VKAG PVD + L + PGD IIDGGN + +TERR+ +
Sbjct: 59 EDFVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEA 118
Query: 124 KGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGS 183
GL ++GMGVSGGEEGA +GPSLMPGG+ AY + I++ +AAQVDDGPCVTYIG GGS
Sbjct: 119 LGLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQVDDGPCVTYIGPGGS 178
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKG-ELESFLVEITAD 242
G++VKMVHNGIEYGDMQLI+EAYD+LK V GL+ +EL ++F WNK EL+SFL+EITAD
Sbjct: 179 GHYVKMVHNGIEYGDMQLIAEAYDLLKSVAGLNASELHDVFAAWNKTPELDSFLIEITAD 238
Query: 243 IFKVKDEYGEGE-LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301
IF D+ G G+ LV+ ILD G KGTG+WTV+ A E+ VA PTI A+++ R LS +K E
Sbjct: 239 IFTKVDDLGTGQPLVELILDAAGQKGTGRWTVETALEIGVAIPTIIAAVNARILSSIKAE 298
Query: 302 REKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 361
R+ A+++L +G E D++ ID VR ALY SKICSYAQGM LL S
Sbjct: 299 RQAASEIL--SGPITEP----FSGDRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYN 352
Query: 362 WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421
+ LN GELARIWKGGCIIRA FL++IK+AY +P LA+L++ PEF + ++ RQ AWRRV+
Sbjct: 353 YGLNLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVI 412
Query: 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
+A GI P ASL YFD+YRR RLP NL QAQRD FGAHTYER DR GSFH +W
Sbjct: 413 AIAAERGIPVPAFSASLDYFDSYRRDRLPQNLTQAQRDYFGAHTYERTDRSGSFHAQW 470
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P80859|6PGD2_BACSU 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis (strain 168) GN=yqjI PE=1 SV=4 | Back alignment and function description |
|---|
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/474 (52%), Positives = 336/474 (70%), Gaps = 9/474 (1%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ GLAVMG+NLALN+ +GF +SVYNR++SK +E L A + + G Y+ +FV
Sbjct: 5 QIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSIEEFV 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++VKAG+ D TI +L H+ D +IDGGN +Y +T+RR E ++ G+
Sbjct: 62 QSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIH 121
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
++G GVSGGEEGA GPS+MPGG EA+ ++ IL+ ++A+VD PC TYIG G+G++V
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGHYV 181
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLISE+Y +LK V GLS EL E+F EWNKGEL+S+L+EITADIF K
Sbjct: 182 KMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKK 241
Query: 248 DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK 307
DE LVD ILDK G KGTGKWT Q A +L V P I S+ R++S +KEER KA+
Sbjct: 242 DEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASG 301
Query: 308 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG 367
+L +K +N K+ LI+ VR+AL+ SKICSYAQG +++ S E W+L +G
Sbjct: 302 LLSGPEVKPVTEN------KEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYG 355
Query: 368 ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA 427
E+A I++GGCIIRA FL +IK+AY R P L +L++D F + Q A R+V+ LA++
Sbjct: 356 EIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQ 415
Query: 428 GISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
G+ P ++L+Y+D+YR A LPANL+QAQRD FGAHTYER D+ G FHTEW K
Sbjct: 416 GVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK 469
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P52208|6PGD_SYNY3 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gnd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/477 (53%), Positives = 325/477 (68%), Gaps = 15/477 (3%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
G+ GLAVMG+NLALNV +GFPI+V+NR+ +K ++ + A R + YT +FV
Sbjct: 13 FGVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFM--AERAVGKDIKAAYTVEEFVQ 70
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++RPR ++++VKAG PVD I L + GD IIDGGN Y +TERR + GL +
Sbjct: 71 LLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLGF 130
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV---DDGPCVTYIGEGGSGN 185
+GMGVSGGEEGA GPSLMPGG+ AY + IL K+AAQV D+ CVT+IG GG+G+
Sbjct: 131 VGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDPDNPACVTFIGPGGAGH 190
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNK-GELESFLVEITADIF 244
+VKMVHNGIEYGDMQLI+EAYD+LK+ GLSN +L E+F +WN+ EL SFL+EI+ DIF
Sbjct: 191 YVKMVHNGIEYGDMQLIAEAYDILKNGLGLSNEQLHEVFGQWNQTDELNSFLIEISTDIF 250
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
KD G L+D ILD G KGTG+WTV EL V PTI A+++ R +S LKEER
Sbjct: 251 AKKDPETGGHLIDYILDAAGQKGTGRWTVMSGLELGVPIPTIYAAVNARVMSSLKEERVA 310
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
A+ L +G D + I VR ALY SK+CSYAQGM L+ S E G+++
Sbjct: 311 ASGQL--SGPSKTFSG-----DVEAWIPKVRDALYCSKMCSYAQGMALIAKASQEFGYDV 363
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N E+ARIWKGGCIIRA FLD+IKKA++ NP L +L++ PEF + ++ RQ WR V+ LA
Sbjct: 364 NLPEIARIWKGGCIIRAGFLDKIKKAFKDNPQLPNLLLAPEFKQSILDRQGPWREVLMLA 423
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS--FHTEW 479
GI+ P +SL YFD+YRRA LP NL QAQRD FGAHTYER D+P FHTEW
Sbjct: 424 NEMGIAVPAFSSSLDYFDSYRRAVLPQNLTQAQRDYFGAHTYERTDKPRGEFFHTEW 480
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 505 | ||||||
| 255553267 | 495 | 6-phosphogluconate dehydrogenase, putati | 0.954 | 0.973 | 0.921 | 0.0 | |
| 225426063 | 494 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.975 | 0.912 | 0.0 | |
| 147798262 | 494 | hypothetical protein VITISV_008240 [Viti | 0.954 | 0.975 | 0.912 | 0.0 | |
| 255537671 | 495 | 6-phosphogluconate dehydrogenase, putati | 0.954 | 0.973 | 0.913 | 0.0 | |
| 449522891 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.973 | 0.888 | 0.0 | |
| 356528974 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.973 | 0.888 | 0.0 | |
| 15222639 | 487 | 6-phosphogluconate dehydrogenase [Arabid | 0.954 | 0.989 | 0.883 | 0.0 | |
| 297836953 | 487 | 6-phosphogluconate dehydrogenase family | 0.954 | 0.989 | 0.883 | 0.0 | |
| 449464086 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.973 | 0.886 | 0.0 | |
| 356513305 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.973 | 0.888 | 0.0 |
| >gi|255553267|ref|XP_002517676.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223543308|gb|EEF44840.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/483 (92%), Positives = 465/483 (96%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNR+TSKVDET+ RA EG PLTG
Sbjct: 1 MEASVALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDETIHRAQNEGPFPLTG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
HYTPRDFVLS+QRPRSVIILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI
Sbjct: 61 HYTPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYQNTERRID 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
EA+QKGLLYLGMGVSGGEEGAR GPSLMPGGSFEAYNNI+DILQKVAAQV+DGPCVTYIG
Sbjct: 121 EANQKGLLYLGMGVSGGEEGARFGPSLMPGGSFEAYNNIKDILQKVAAQVEDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSNAELAEIF EWNKGELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNAELAEIFTEWNKGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
T+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK
Sbjct: 241 TSDIFRVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
EERE AA+VLKEAGLK+EV+ V +DKKRLIDDVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 EERESAAQVLKEAGLKEEVEAVKSGIDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426063|ref|XP_002275970.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/482 (91%), Positives = 462/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
MEAS LSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRAHREG LPL+GH
Sbjct: 1 MEASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAHREGHLPLSGH 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS++ILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSIVILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYENTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
AS KG+LYLGMGVSGGEEGARHGPSLMPGGS++AY NI DI++KVAAQVDDGPCVTYIGE
Sbjct: 121 ASGKGILYLGMGVSGGEEGARHGPSLMPGGSYQAYQNIEDIVKKVAAQVDDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN+EL++IF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNSELSDIFGEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AA VL EAGLKDEV VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 EREAAAGVLSEAGLKDEVGFARSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRRV
Sbjct: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147798262|emb|CAN63456.1| hypothetical protein VITISV_008240 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/482 (91%), Positives = 461/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
MEAS LSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRAHREG LPL+GH
Sbjct: 1 MEASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAHREGHLPLSGH 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y PRDFVLSIQRPRS++ILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI E
Sbjct: 61 YXPRDFVLSIQRPRSIVILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYENTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
AS KG+LYLGMGVSGGEEGARHGPSLMPGGS++AY NI DI++KVAAQVDDGPCVTYIGE
Sbjct: 121 ASGKGILYLGMGVSGGEEGARHGPSLMPGGSYQAYQNIEDIVKKVAAQVDDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN+EL++IF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNSELSDIFGEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AA VL EAGLKDEV VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 EREAAAGVLSEAGLKDEVGFARSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRRV
Sbjct: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537671|ref|XP_002509902.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223549801|gb|EEF51289.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/483 (91%), Positives = 463/483 (95%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNR+TSKVD+T+ RA EG PLTG
Sbjct: 1 MEASVALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDDTIHRAQNEGPFPLTG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
HYTPRDFVLS+QRPRSVIILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI
Sbjct: 61 HYTPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYQNTERRID 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
EA+QKG+LYLGMGVSGGEEGAR GPSLMPGGSFEAYNNI+DILQKVAAQV+DGPCVTYIG
Sbjct: 121 EANQKGILYLGMGVSGGEEGARFGPSLMPGGSFEAYNNIKDILQKVAAQVEDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSNAELA+IF EWNKGELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNAELADIFTEWNKGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
T+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK
Sbjct: 241 TSDIFRVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
EERE AA+VLKEAGLK+EV V +DKKRLIDDVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 EERESAAEVLKEAGLKEEVGTVKSGIDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
K WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR
Sbjct: 361 KRWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522891|ref|XP_004168459.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/483 (88%), Positives = 462/483 (95%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+DRAH EG LPL G
Sbjct: 1 MEASTALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAHNEGNLPLFG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
Y PRDFVLSIQRPRSVIILVKAG PVDQTIAALS+H+ PGD IIDGGNEWY NTERRI
Sbjct: 61 QYNPRDFVLSIQRPRSVIILVKAGLPVDQTIAALSDHLEPGDAIIDGGNEWYENTERRIE 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
+AS++GLLYLGMGVSGGE+GARHGPSLMPGGSF+AY+N++DIL+KVAAQVDDGPCVTYIG
Sbjct: 121 QASERGLLYLGMGVSGGEDGARHGPSLMPGGSFQAYSNVQDILKKVAAQVDDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELA+IF EWN+GELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFSEWNRGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
+ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLK
Sbjct: 241 SADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
+ERE AA+VLKEAG+ D V +V +DKK+LI+DVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 DERESAAEVLKEAGMTDSVGSVRSGIDKKKLIEDVRQALYASKICSYAQGMNLLRAKSLE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLLVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DR GS+HTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528974|ref|XP_003533072.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/483 (88%), Positives = 458/483 (94%), Gaps = 1/483 (0%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRT SKVDET+DRA EG LPLTG
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVDRARNEGSLPLTGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
YTPRDFVLS+QRPRSVIILVKAG+PVDQTIAALS+H+ PGDCIIDGGNEWY NTERR+
Sbjct: 61 YTPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSDHLDPGDCIIDGGNEWYENTERRMSL 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
+ KGLLYLGMGVSGGE+GARHGPSLMPGGS +AY+N++DIL K+AAQV+DGPCVTYIGE
Sbjct: 121 VADKGLLYLGMGVSGGEDGARHGPSLMPGGSHQAYSNVQDILHKIAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELA+IF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFAEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE GEG LVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEDGEGFLVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVH-VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
ERE AA VLKEAGL DE+ V V VDKKRLIDDVRQALYASKICSYAQGMNLLR+KSNE
Sbjct: 301 ERESAAAVLKEAGLSDELGRVSVSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSNE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLN GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNLGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DRPG+FHTEW
Sbjct: 421 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGAFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222639|ref|NP_176601.1| 6-phosphogluconate dehydrogenase [Arabidopsis thaliana] gi|75313449|sp|Q9SH69.1|6PGD1_ARATH RecName: Full=6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic gi|6692095|gb|AAF24560.1|AC007764_2 F22C12.5 [Arabidopsis thaliana] gi|28416567|gb|AAO42814.1| At1g64190 [Arabidopsis thaliana] gi|110743402|dbj|BAE99587.1| putative 6-phosphogluconate dehydrogenase [Arabidopsis thaliana] gi|332196086|gb|AEE34207.1| 6-phosphogluconate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 SWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836953|ref|XP_002886358.1| 6-phosphogluconate dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297332199|gb|EFH62617.1| 6-phosphogluconate dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILGKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGG SN ELAEIF EWN+GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGFSNEELAEIFTEWNRGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464086|ref|XP_004149760.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/483 (88%), Positives = 462/483 (95%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+DRAH EG LPL G
Sbjct: 1 MEASTALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAHNEGNLPLFG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
Y PRDFVLSIQRPRSVIILVKAG PVDQTIAALS+H+ PGD IIDGGNEWY NTERRI
Sbjct: 61 QYNPRDFVLSIQRPRSVIILVKAGLPVDQTIAALSDHLEPGDAIIDGGNEWYENTERRIA 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
+AS++G+LYLGMGVSGGE+GARHGPSLMPGGSF+AY+N++DIL+KVAAQVDDGPCVTYIG
Sbjct: 121 QASERGILYLGMGVSGGEDGARHGPSLMPGGSFQAYSNVQDILKKVAAQVDDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELA+IF EWN+GELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFSEWNRGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
+ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLK
Sbjct: 241 SADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
+ERE AA+VLKEAG+ D V +V +DKK+LI+DVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 DERESAAEVLKEAGMTDSVGSVRSGIDKKKLIEDVRQALYASKICSYAQGMNLLRAKSLE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLLVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DR GS+HTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513305|ref|XP_003525354.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/483 (88%), Positives = 457/483 (94%), Gaps = 1/483 (0%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRT SKVD+T+DRA EG LPLTG
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDQTVDRARNEGSLPLTGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
YTPRDFVLS+QRPRSVIILVKAGSPVD TIAALS+H+ PGDCIIDGGNEWY NTERR++
Sbjct: 61 YTPRDFVLSLQRPRSVIILVKAGSPVDHTIAALSDHLDPGDCIIDGGNEWYENTERRMNL 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
+ KGLLYLGMGVSGGE+GARHGPSLMPGGS AY+N++DIL K+AAQV+DGPCVTYIGE
Sbjct: 121 VADKGLLYLGMGVSGGEDGARHGPSLMPGGSHHAYSNVQDILHKIAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELAEIF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELAEIFVEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE GEG LVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEDGEGFLVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVH-VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
ERE AA VLKEAGL DE+ V V VDKKRLIDDVRQALYASKICSYAQGMNLLR+KSNE
Sbjct: 301 ERESAAAVLKEAGLSDELGRVNVSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSNE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLN GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNLGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DRPG+FHTEW
Sbjct: 421 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGAFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 505 | ||||||
| TAIR|locus:2024542 | 487 | AT1G64190 [Arabidopsis thalian | 0.954 | 0.989 | 0.883 | 6.6e-232 | |
| TAIR|locus:2160422 | 487 | AT5G41670 [Arabidopsis thalian | 0.954 | 0.989 | 0.883 | 1.1e-231 | |
| UNIPROTKB|Q94KU2 | 537 | pgdP "6-phosphogluconate dehyd | 0.958 | 0.901 | 0.847 | 6e-222 | |
| UNIPROTKB|Q9LI00 | 480 | G6PGH1 "6-phosphogluconate deh | 0.934 | 0.983 | 0.768 | 3.9e-195 | |
| TAIR|locus:2074577 | 486 | AT3G02360 [Arabidopsis thalian | 0.938 | 0.975 | 0.756 | 8.1e-195 | |
| UNIPROTKB|Q2R480 | 508 | G6PGH2 "6-phosphogluconate deh | 0.938 | 0.933 | 0.761 | 2.1e-194 | |
| TIGR_CMR|BA_0164 | 469 | BA_0164 "6-phosphogluconate de | 0.916 | 0.987 | 0.507 | 4.2e-127 | |
| GENEDB_PFALCIPARUM|PF14_0520 | 468 | PF14_0520 "6-phosphogluconate | 0.920 | 0.993 | 0.515 | 9.9e-126 | |
| UNIPROTKB|Q8IKT2 | 468 | PF14_0520 "6-phosphogluconate | 0.920 | 0.993 | 0.515 | 9.9e-126 | |
| UNIPROTKB|P37756 | 468 | gnd "6-phosphogluconate dehydr | 0.912 | 0.985 | 0.515 | 1.2e-122 |
| TAIR|locus:2024542 AT1G64190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2237 (792.5 bits), Expect = 6.6e-232, P = 6.6e-232
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 SWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
|
| TAIR|locus:2160422 AT5G41670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2235 (791.8 bits), Expect = 1.1e-231, P = 1.1e-231
Identities = 426/482 (88%), Positives = 461/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME+ ALSRIGLAGLAVMGQNLALN+A+KGFPISVYNRTTSKVDETLDRA EG+LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRSVIILVKAG+PVDQTI+ALSE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A +KGLLYLGMGVSGGEEGAR+GPSLMPGGSF AYNN++DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN+GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKD+YG+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+++ + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GW+LN GE+ARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP+FA+EMVQRQAAWRRV
Sbjct: 361 GWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
|
| UNIPROTKB|Q94KU2 pgdP "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 2143 (759.4 bits), Expect = 6.0e-222, P = 6.0e-222
Identities = 410/484 (84%), Positives = 443/484 (91%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A S+IGL GLAVMGQNLALN+AEKGFPISVYNRT SKVDETLDRA EG LPL+GHYTPR
Sbjct: 47 AASQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPR 106
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
DFVLSI+RPRS++ILVKAGSPVDQTIA+L+ M PGD IIDGGNEWY NTERR+ +A
Sbjct: 107 DFVLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSN 166
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184
GLLYLGMGVSGGEEGAR GPSLMPGG F+AY+NI+ IL+KVAAQVDDGPCVTYIGEGGSG
Sbjct: 167 GLLYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQVDDGPCVTYIGEGGSG 226
Query: 185 NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244
NFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN EL +IFDEWNK ELESFLVEITADIF
Sbjct: 227 NFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIF 286
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
KVKD+ +G LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE
Sbjct: 287 KVKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREN 346
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AAK+L+ AG+K+EV + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS E GW+L
Sbjct: 347 AAKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDL 406
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N GELARIWKGGCIIRAVFLD IK+AYQRNPNLASLVVDPEFA+EMVQRQAAWRRVVGLA
Sbjct: 407 NLGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLA 466
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLPA 484
+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRD FGAHTYER+D PGS+HTEW+KL
Sbjct: 467 VSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLAR 526
Query: 485 RLVP 488
+ P
Sbjct: 527 KSDP 530
|
|
| UNIPROTKB|Q9LI00 G6PGH1 "6-phosphogluconate dehydrogenase, decarboxylating 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1890 (670.4 bits), Expect = 3.9e-195, P = 3.9e-195
Identities = 368/479 (76%), Positives = 416/479 (86%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A++RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+ RA EG LP+ G + P
Sbjct: 2 AVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPA 61
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
FV SIQ+PR VI+LVKAG+PVDQTIA L+ H+ GDCIIDGGNEWY NTERR ++
Sbjct: 62 SFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEER 121
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGS 183
GLLYLGMGVSGGEEGAR+GPSLMPGGSFEAY I DIL KVAAQV D GPCVTYIG+GGS
Sbjct: 122 GLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGS 181
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
GNFVKMVHNGIEYGDMQLISEAYDVLK VG L+N+EL ++F EWNKGEL SFL+EITADI
Sbjct: 182 GNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADI 241
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
F +KD+ G G LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTI ASLD R+LSGLK+ER
Sbjct: 242 FSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERV 301
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+AAKV + G D N+ V DK +LI+DVRQALYASKICSYAQGMN++++KS EKGW+
Sbjct: 302 EAAKVFQ--G--DFSSNLPV--DKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWS 355
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN GELARIWKGGCIIRA+FLDRIKKAY RN +LA+L+VDPEFA+E++ RQAAWRRVV L
Sbjct: 356 LNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCL 415
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
AI+ G+STPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER+D PGSFHTEW K+
Sbjct: 416 AINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKI 474
|
|
| TAIR|locus:2074577 AT3G02360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1887 (669.3 bits), Expect = 8.1e-195, P = 8.1e-195
Identities = 361/477 (75%), Positives = 412/477 (86%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G + P F
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESF 65
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V SIQ+PR +I+LVKAGSPVDQTI LS ++ GDCI+DGGNEWY NTERR ++ G
Sbjct: 66 VKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGF 125
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGSGN 185
LYLGMGVSGGEEGAR+GPS+MPGGS+EAY NI DI+ KVAAQV D GPCVTYIG+GGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGN 185
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245
FVKMVHNGIEYGDMQLI+EAYDVLK VG LSN EL +F +WNKGELESFLVEITADIF
Sbjct: 186 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADIFG 245
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
+KD+ G+G LVDK+LDKTGMKGTGKWTVQQAAELSV APTI +SLD R+LSGLK+ER +A
Sbjct: 246 IKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERVQA 305
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 365
AKV K G D + + VDKK+L+DDVR+ALYASKICSYAQGMNL+R+KS EKGW L
Sbjct: 306 AKVFKAGGFGDILTDQ--KVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAI 425
GELARIWKGGCIIRA+FLDRIK+AY RN LA+L+VDPEFA+E+++RQ+AWRRVV LAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 426 SAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
++GISTPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER D GSFHTEW K+
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKI 480
|
|
| UNIPROTKB|Q2R480 G6PGH2 "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1883 (667.9 bits), Expect = 2.1e-194, P = 2.1e-194
Identities = 364/478 (76%), Positives = 408/478 (85%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
RIGLAGLA MGQNLALN+AEKGFPISVYNRT +KVD T+ RA EG LP+ GH PR FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
LS+ RPR+V++LV+AG VD TI AL ++ GD I+DGGNEWY NTERRI EA+ +G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
YLGMGVSGGEEGAR+GPSLMPGG +AYNNIRDIL+K AAQ +DG CVT++G GG+GNFV
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGNFV 202
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLI+EAYDVL+ VGGLSN+E+A++F EWN+GELESFLVEITADIF V
Sbjct: 203 KMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTVA 262
Query: 248 DEY---GEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
D G G LVDKILDKTGMKGTGKWTVQQAAEL++AAPTIAASLD RYLSGLK+ER
Sbjct: 263 DPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERVA 322
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AA VL+ G+ + ++VDKK L+D VRQALYASKICSYAQGMNLLR+KS EKGWNL
Sbjct: 323 AAGVLEAEGMPSGLLET-INVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N ELARIWKGGCIIRA FLDRIKKAY RNP LA+L+VD EFAREMVQRQ AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+ AGISTPGM ASLSYFDTYR +RLPANL+QAQRDLFGAHTYERIDRPGSFHTEWTKL
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKL 499
|
|
| TIGR_CMR|BA_0164 BA_0164 "6-phosphogluconate dehydrogenase, decarboxylating" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
Identities = 240/473 (50%), Positives = 337/473 (71%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ G+ VMG++LALN KG+ +++Y+ + KVDET++ G+ L G + +FV
Sbjct: 5 QIGVVGVGVMGKSLALNFESKGYSVALYDISKEKVDETIEE--NRGK-NLVGTHIVEEFV 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++V AG D+ I +L H+ GD +IDGGN ++++T RR +++G+
Sbjct: 62 NSLESPRKILLMVNAGEITDKAIDSLVPHLDKGDILIDGGNTYFVDTIRRNKRLAEEGIN 121
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
++G GVSGGEEGA GPS+MPGG +AY ++D+L+ ++A+V++ PC +YIG G+G++V
Sbjct: 122 FIGAGVSGGEEGALKGPSIMPGGQKDAYEKVKDMLENISAKVNNEPCCSYIGPNGAGHYV 181
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLI EAY LK L+ E EIF EWNKGEL S+L+EITADIFK K
Sbjct: 182 KMVHNGIEYGDMQLICEAYFFLKQTLDLTAEEFHEIFAEWNKGELNSYLIEITADIFKKK 241
Query: 248 DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK 307
DE LVD ILD G KGTGKWT Q A +L ++ P I S+ R +S LKEER A+K
Sbjct: 242 DEETGKPLVDVILDTAGQKGTGKWTSQSALDLGISLPIITESVFARCISALKEERVNASK 301
Query: 308 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG 367
VL +G KD+ +GV +K LI+ VRQALY SKICSYAQG L++ S E WNL+FG
Sbjct: 302 VL--SGPKDKTA-IGV--EKAELIEAVRQALYMSKICSYAQGFTQLKAASEEYNWNLDFG 356
Query: 368 ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR-QAAWRRVVGLAIS 426
++ +W+GGCIIRA FL IK+AY+ N +L +L++DP F +E+V+ Q R+++ +A+
Sbjct: 357 SISMLWRGGCIIRAAFLQNIKEAYETNTDLPNLLLDPYF-KEIVESYQGGLRQIISMAVQ 415
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
GI P A++SY+D+YR A+LPANL+QAQRD FGAHTY+R+D+ G+FHT+W
Sbjct: 416 QGIPIPAFSAAISYYDSYRTAKLPANLLQAQRDYFGAHTYKRVDKEGTFHTKW 468
|
|
| GENEDB_PFALCIPARUM|PF14_0520 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 243/471 (51%), Positives = 320/471 (67%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IGL GLAVMGQNL+LN++ KGF I VYNRT + +ET+ RA +E L + G+ T + +
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRA-KEENLVVYGYKTVEELIN 62
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++++PR VI+L+KAG VD+ I+ + +H GD IIDGGNEWY+N+ERRI +K + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
L MGVSGGE GAR+G S MPGGS AY+ +++IL+K +AQV + PCVTYIG G SGN+VK
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNSPCVTYIGPGSSGNYVK 182
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLISE+Y ++KH+ N +L+E+F++WN+G L S+L+EITA+I KD
Sbjct: 183 MVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKKD 242
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
+ LVD ILD G KGTGKWT+ +A E + PT+ A+LD R +S KE R KA
Sbjct: 243 DLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAESN 302
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
KD + + + D +D+ ALY KI SY QG+ LL+ S E W LN GE
Sbjct: 303 FN----KDNIL-IDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGE 357
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+ARIW+GGCIIRAVFLDRI AY+ N L L +D EF+ ++ + + R++V +A
Sbjct: 358 IARIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYS 417
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
I P ASL+YF LP NLVQAQRD FG+HTY R DR G++HT W
Sbjct: 418 IPIPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|Q8IKT2 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 243/471 (51%), Positives = 320/471 (67%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IGL GLAVMGQNL+LN++ KGF I VYNRT + +ET+ RA +E L + G+ T + +
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRA-KEENLVVYGYKTVEELIN 62
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++++PR VI+L+KAG VD+ I+ + +H GD IIDGGNEWY+N+ERRI +K + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
L MGVSGGE GAR+G S MPGGS AY+ +++IL+K +AQV + PCVTYIG G SGN+VK
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNSPCVTYIGPGSSGNYVK 182
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLISE+Y ++KH+ N +L+E+F++WN+G L S+L+EITA+I KD
Sbjct: 183 MVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKKD 242
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
+ LVD ILD G KGTGKWT+ +A E + PT+ A+LD R +S KE R KA
Sbjct: 243 DLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAESN 302
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
KD + + + D +D+ ALY KI SY QG+ LL+ S E W LN GE
Sbjct: 303 FN----KDNIL-IDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGE 357
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+ARIW+GGCIIRAVFLDRI AY+ N L L +D EF+ ++ + + R++V +A
Sbjct: 358 IARIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYS 417
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
I P ASL+YF LP NLVQAQRD FG+HTY R DR G++HT W
Sbjct: 418 IPIPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|P37756 gnd "6-phosphogluconate dehydrogenase, decarboxylating" [Shigella flexneri (taxid:623)] | Back alignment and assigned GO terms |
|---|
Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
Identities = 244/473 (51%), Positives = 324/473 (68%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ G+AVMG+NLALN+ +G+ +S++NR+ K +E + A G+ L +YT ++FV
Sbjct: 5 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLAPYYTVKEFV 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++VKAG+ D I +L ++ GD IIDGGN ++ +T RR E S +G
Sbjct: 62 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 121
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 186
++G GVSGGEEGA GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+G++
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 181
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKMVHNGIEYGDMQLI+EAY +LK LSN ELA+ F EWN GEL S+L++IT DIF
Sbjct: 182 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELAQTFTEWNNGELSSYLIDITKDIFTK 241
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KDE G LVD ILD+ KGTGKWT Q A +L I S+ RY+S LK++R A+
Sbjct: 242 KDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS 300
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
KVL +G + Q+ G DK I+ VR ALY KI SYAQG + LR+ S E W+LN+
Sbjct: 301 KVL--SG--PQAQSAG---DKAEFIEKVRSALYLGKIVSYAQGFSQLRAASEEYNWDLNY 353
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GE+A+I++ GCIIRA FL +I AY NP +A+L++ P F + Q A R VV A+
Sbjct: 354 GEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQ 413
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
GI P A+++Y+D+YR A LPANL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 414 NGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 466
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7VMX4 | 6PGD_HAEDU | 1, ., 1, ., 1, ., 4, 4 | 0.4821 | 0.9148 | 0.9545 | yes | no |
| P96789 | 6PGD_LACLM | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9207 | 0.9851 | yes | no |
| Q8TA03 | 6PGD_DICDI | 1, ., 1, ., 1, ., 4, 4 | 0.4905 | 0.9267 | 0.9492 | yes | no |
| P41580 | 6PGD_SHISO | 1, ., 1, ., 1, ., 4, 4 | 0.5109 | 0.8792 | 0.9977 | yes | no |
| Q6GGI7 | 6PGD_STAAR | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
| P41582 | 6PGD_CITDI | 1, ., 1, ., 1, ., 4, 4 | 0.5142 | 0.8772 | 0.9955 | yes | no |
| Q9LI00 | 6PGD1_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.7661 | 0.9346 | 0.9833 | yes | no |
| P53319 | 6PGD2_YEAST | 1, ., 1, ., 1, ., 4, 4 | 0.4873 | 0.9227 | 0.9471 | yes | no |
| P70718 | 6PGD_AGGAC | 1, ., 1, ., 1, ., 4, 4 | 0.4905 | 0.9148 | 0.9545 | yes | no |
| P57208 | 6PGD_BUCAI | 1, ., 1, ., 1, ., 4, 4 | 0.4556 | 0.9188 | 0.9914 | yes | no |
| P85968 | 6PGD_RAT | 1, ., 1, ., 1, ., 4, 4 | 0.5062 | 0.9247 | 0.9668 | yes | no |
| Q9FFR3 | 6PGD2_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.8838 | 0.9544 | 0.9897 | no | no |
| P00350 | 6PGD_ECOLI | 1, ., 1, ., 1, ., 4, 4 | 0.5116 | 0.9128 | 0.9850 | N/A | no |
| Q931R3 | 6PGD_STAAM | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
| Q94KU1 | 6PGD1_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.7710 | 0.9386 | 0.9813 | N/A | no |
| Q94KU2 | 6PGD2_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.8471 | 0.9584 | 0.9013 | N/A | no |
| P63335 | 6PGD_STAAW | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
| P63334 | 6PGD_STAAN | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
| Q5HP42 | 6PGD_STAEQ | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9168 | 0.9893 | yes | no |
| P41575 | 6PGD_RAOPL | 1, ., 1, ., 1, ., 4, 4 | 0.5032 | 0.8772 | 0.9955 | N/A | no |
| P52209 | 6PGD_HUMAN | 1, ., 1, ., 1, ., 4, 4 | 0.5041 | 0.9247 | 0.9668 | yes | no |
| P52208 | 6PGD_SYNY3 | 1, ., 1, ., 1, ., 4, 4 | 0.5366 | 0.9148 | 0.9585 | N/A | no |
| P37754 | 6PGD9_ECOLX | 1, ., 1, ., 1, ., 4, 4 | 0.5073 | 0.9128 | 0.9850 | yes | no |
| P37756 | 6PGD_SHIFL | 1, ., 1, ., 1, ., 4, 4 | 0.5137 | 0.9128 | 0.9850 | yes | no |
| P41574 | 6PGD_ESCVU | 1, ., 1, ., 1, ., 4, 4 | 0.5098 | 0.8772 | 0.9955 | N/A | no |
| Q9SH69 | 6PGD1_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.8838 | 0.9544 | 0.9897 | yes | no |
| P41581 | 6PGD_CITAM | 1, ., 1, ., 1, ., 4, 4 | 0.5098 | 0.8772 | 0.9955 | N/A | no |
| Q9DCD0 | 6PGD_MOUSE | 1, ., 1, ., 1, ., 4, 4 | 0.5104 | 0.9247 | 0.9668 | yes | no |
| P80859 | 6PGD2_BACSU | 1, ., 1, ., 1, ., 4, 4 | 0.5253 | 0.9207 | 0.9914 | yes | no |
| Q9FWA3 | 6GPD3_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7568 | 0.9386 | 0.9753 | no | no |
| P41577 | 6PGD_RAOTE | 1, ., 1, ., 1, ., 4, 4 | 0.5054 | 0.8772 | 0.9955 | N/A | no |
| P41576 | 6PGD_KLEPN | 1, ., 1, ., 1, ., 4, 4 | 0.5095 | 0.9128 | 0.9850 | yes | no |
| P21577 | 6PGD_SYNE7 | 1, ., 1, ., 1, ., 4, 4 | 0.5669 | 0.9227 | 0.9893 | yes | no |
| P41573 | 6PGD_DROSI | 1, ., 1, ., 1, ., 4, 4 | 0.5020 | 0.9227 | 0.9688 | N/A | no |
| Q9ZHD9 | 6PGD_BUCAP | 1, ., 1, ., 1, ., 4, 4 | 0.4566 | 0.9148 | 0.9767 | yes | no |
| Q9CHU6 | 6PGD_LACLA | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9207 | 0.9851 | yes | no |
| P41572 | 6PGD_DROME | 1, ., 1, ., 1, ., 4, 4 | 0.5020 | 0.9227 | 0.9688 | yes | no |
| P41579 | 6PGD_SHIDY | 1, ., 1, ., 1, ., 4, 4 | 0.5109 | 0.8792 | 0.9977 | yes | no |
| P41578 | 6PGD_SHIBO | 1, ., 1, ., 1, ., 4, 4 | 0.5087 | 0.8792 | 0.9977 | yes | no |
| P14062 | 6PGD_SALTY | 1, ., 1, ., 1, ., 4, 4 | 0.5137 | 0.9128 | 0.9850 | yes | no |
| Q6G954 | 6PGD_STAAS | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
| Q2R480 | 6PGD2_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.7615 | 0.9386 | 0.9330 | no | no |
| Q8CP47 | 6PGD_STAES | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9168 | 0.9893 | yes | no |
| P00349 | 6PGD_SHEEP | 1, ., 1, ., 1, ., 4, 4 | 0.5104 | 0.9247 | 0.9668 | N/A | no |
| Q17761 | 6PGD_CAEEL | 1, ., 1, ., 1, ., 4, 4 | 0.4772 | 0.9425 | 0.9834 | yes | no |
| Q5HFR2 | 6PGD_STAAC | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 505 | |||
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 0.0 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 0.0 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 0.0 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 0.0 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 0.0 | |
| pfam00393 | 290 | pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, | 0.0 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 1e-75 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 6e-61 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-57 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 6e-57 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 3e-49 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 2e-19 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 4e-11 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 3e-10 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 2e-05 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 7e-05 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 2e-04 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 0.001 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 0.001 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 0.002 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 0.002 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 1030 bits (2665), Expect = 0.0
Identities = 414/482 (85%), Positives = 444/482 (92%), Gaps = 1/482 (0%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
M ++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G
Sbjct: 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGF 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
P DFVLSIQ+PRSVIILVKAG+PVDQTI ALSE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A++KGLLYLGMGVSGGEEGAR+GPSLMPGGSFEAY NI DIL+KVAAQVDDGPCVTYIG
Sbjct: 121 AAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGP 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GG+GNFVKMVHNGIEYGDMQLISEAYDVLK VGGLSN ELAE+F EWNKGELESFL+EIT
Sbjct: 181 GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIF VKD+ G+G LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLD RYLSGLKE
Sbjct: 241 ADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ER AAKV KEAGL+D + VDKK+LIDDVRQALYASKICSYAQGMNL+R+KS EK
Sbjct: 301 ERVAAAKVFKEAGLEDILSADSG-VDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEK 359
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLN GELARIWKGGCIIRAVFLDRIKKAY RNP+LASL+VDPEFA+EMV+RQAAWRRV
Sbjct: 360 GWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRV 419
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
V LAI+AGISTPGM ASL+YFDTYRRARLPANLVQAQRD FGAHTYER+DRPGSFHTEWT
Sbjct: 420 VSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWT 479
Query: 481 KL 482
KL
Sbjct: 480 KL 481
|
Length = 493 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 788 bits (2037), Expect = 0.0
Identities = 265/466 (56%), Positives = 335/466 (71%), Gaps = 10/466 (2%)
Query: 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76
MG+NLALN+A G+ ++VYNRT K DE L + ++ YT +FV S+++PR +
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKI--VPAYTLEEFVASLEKPRKI 58
Query: 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136
+++VKAG+PVD I L + GD IIDGGN Y +T RR E ++KG+ ++GMGVSGG
Sbjct: 59 LLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG 118
Query: 137 EEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNFVKMVHNGIE 195
EEGA HGPS+MPGG EAY + IL+K+AA+V+DG PCVTYIG G+G++VKMVHNGIE
Sbjct: 119 EEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIE 178
Query: 196 YGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGEL 255
YGDMQLI+EAYD+LK GLS E+A++F EWNKGEL S+L+EITADI + KDE L
Sbjct: 179 YGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPL 238
Query: 256 VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLK 315
VD ILDK G KGTGKWT Q A +L V I ++ RYLS LK++R A+KVL K
Sbjct: 239 VDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAAK 298
Query: 316 DEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKG 375
E DK I+DVRQALYASKI SYAQG LLR+ S E GW+L+ GE+ARIW+G
Sbjct: 299 FEG-------DKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRG 351
Query: 376 GCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMC 435
GCIIRA FL +I AY+ NP+LA+L++DP F + + Q A RRVV LA+ AGI P
Sbjct: 352 GCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFS 411
Query: 436 ASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
++LSY+D+YR ARLPANL+QAQRD FGAHTYER D+ G FHTEW++
Sbjct: 412 SALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457
|
Length = 459 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 743 bits (1921), Expect = 0.0
Identities = 271/472 (57%), Positives = 340/472 (72%), Gaps = 9/472 (1%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IG+ GLAVMG NLALN+A+ G+ ++VYNRTT K DE L + + Y+ +FV
Sbjct: 6 IGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNI--VPAYSIEEFVA 63
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
S+++PR ++++VKAG+PVD I L + GD IIDGGN Y +T RR E S+KG+L+
Sbjct: 64 SLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILF 123
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
+GMGVSGGEEGARHGPS+MPGG EAY + IL K+AA+VD PC T+IG G+G+FVK
Sbjct: 124 VGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVK 183
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLI+EAYD+LK GLS E+AE+F+EWNKGEL+S+L+EITADI + KD
Sbjct: 184 MVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKKD 243
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
E G LVDKILDK G KGTGKWTV A +L V I ++ RYLS LK+ER A+KV
Sbjct: 244 EEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKV 303
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
L ++ G DK+ I+DVRQALYASKI SYAQG LLR+ S E GW+LN GE
Sbjct: 304 LA----GPKLGEPG---DKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGE 356
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+A IW+GGCIIR+ FLD+I A+ NP LA+L++ P F + + Q + RRVV A+ AG
Sbjct: 357 IALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAG 416
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
I P ++LSY+D+YR ARLPANL+QAQRD FGAHTYER D+ G FHT WT
Sbjct: 417 IPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWT 468
|
Length = 473 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 698 bits (1803), Expect = 0.0
Identities = 283/474 (59%), Positives = 357/474 (75%), Gaps = 5/474 (1%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
S IGL GLAVMGQNLALN+A +GF ISVYNRT K +E + +A +EG + G++T +
Sbjct: 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-KEGNTRVKGYHTLEEL 60
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V S+++PR VI+L+KAG VD+TI L + GD IIDGGNEWYLNTERRI +KG+
Sbjct: 61 VNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGI 120
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
LYLGMGVSGGEEGAR+GPSLMPGG+ EAY++++DIL+K +A+V D PCVTY+G G SG++
Sbjct: 121 LYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHY 180
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKMVHNGIEYGDMQLISE+Y ++KH+ G+SN EL+E+F++WN+G L S+L+EITA I
Sbjct: 181 VKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAK 240
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KD+ GE LVDKILD G KGTGKWTVQ+A E + PT+AAS+D R +S LKEER KA+
Sbjct: 241 KDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKAS 300
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
L ++ + DKK IDD++ ALY SKI SY QG L++ S E GWNLN
Sbjct: 301 SHLAGPNPANKTET----EDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNL 356
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GE+ARIW+GGCIIRAVFLDRIK A+++NP L L +DP+F E+ +Q +WR+VV +A
Sbjct: 357 GEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATK 416
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
GI TP ASL+Y+ YR LPANLVQAQRD FGAHTY+R+DRPG+FHT W
Sbjct: 417 NGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470
|
Length = 470 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 682 bits (1761), Expect = 0.0
Identities = 277/474 (58%), Positives = 337/474 (71%), Gaps = 11/474 (2%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IG+ GLAVMG NLALN+A+ GF +SVYNRT K DE L H +G+ + G Y+ +FV
Sbjct: 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL-AEHAKGK-KIVGAYSIEEFVQ 59
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
S++RPR ++++VKAG+PVD I L + GD IIDGGN Y +TERR E KG+L+
Sbjct: 60 SLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
+G GVSGGEEGAR GPS+MPGGS EA+ + I QK+AA+VD PC T+IG G+G++VK
Sbjct: 120 VGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVK 179
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLI EAYD+LK GLSN E+AE+F EWN GEL+S+L+EITADI K KD
Sbjct: 180 MVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKD 239
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
E G+ LVDKILD G KGTGKWT A +L V I S+ RYLS LKEER A+KV
Sbjct: 240 EDGK-PLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKV 298
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
L + VDK+ I+DVRQALYASKI SYAQG LLR S E GW+LN GE
Sbjct: 299 LSGPLAPEP------AVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGE 352
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+A IW+GGCIIR+ FLD+I KA+ NP+LA+L++ P F + Q+ WRRVV LAI G
Sbjct: 353 IALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYG 412
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS--FHTEWT 480
I P A+LS++D YR ARLPANL+QAQRD FGAHTYER D+P FHT WT
Sbjct: 413 IPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 532 bits (1374), Expect = 0.0
Identities = 189/297 (63%), Positives = 228/297 (76%), Gaps = 7/297 (2%)
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G++VKMVHNGIEYGDMQLI+EAYD+LK V GLSN E+A++F+EWNKGEL+S+L+EITADI
Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
+ KDE G+ LVDKILDK G KGTGKWTVQ A EL V P I ++ RYLS LKEER
Sbjct: 61 LRKKDEDGKP-LVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERV 119
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
A+KVL G K DK I+DVRQALYASKI SYAQG LLR+ S E GWN
Sbjct: 120 AASKVLS--GPKAAKD----KGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWN 173
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN GE+ARIW+GGCIIRA FLD+IK AY++NP+L +L++DP F +E+ + Q +WRRVV +
Sbjct: 174 LNLGEIARIWRGGCIIRAQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAI 233
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
A+ AGI P ++LSY+D+YR RLPANL+QAQRD FGAHTYER D+ G FHT WT
Sbjct: 234 AVEAGIPVPAFSSALSYYDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFFHTNWT 290
|
This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 1e-75
Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 20/303 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G+ GL MG N+A + G + Y+R V+ EG TG + + V
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEA----LAEEG---ATGADSLEELV 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ PR V ++V AG D TI L+ +SPGD +IDGGN +Y + RR ++KG+
Sbjct: 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
++ +G SGG G G LM GG EA + I + +A + +DG + G G+G+FV
Sbjct: 115 FVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDG--YLHAGPVGAGHFV 172
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKV 246
KMVHNGIEYG MQ +E +++L+ + +LA + + W +G + S+L+++TAD
Sbjct: 173 KMVHNGIEYGMMQAYAEGFELLEASR--FDLDLAAVAEVWRRGSVIRSWLLDLTADALA- 229
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
+D +L D+I G G+WTV++A +L+V AP IAA+L R+ S ++E A
Sbjct: 230 ED----PKL-DEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRS--RQEDSFAD 282
Query: 307 KVL 309
KV+
Sbjct: 283 KVV 285
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 6e-61
Identities = 118/321 (36%), Positives = 175/321 (54%), Gaps = 26/321 (8%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IG+ GL MG NL + + G + Y+ + V+E D EG + + V
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD----EGATGAA---SLDELVA 55
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
+ PR V ++V AG D I L+ +S GD +IDGGN Y ++ RR ++KG+ +
Sbjct: 56 KLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHF 115
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
L +G SGG GA G LM GG EA + I + +A +DG Y G GSG+FVK
Sbjct: 116 LDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPG-EDG--YLYCGPSGSGHFVK 172
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVK 247
MVHNGIEYG MQ I+E +++LK+ + +L + + WN G + S+L+++TA+ FK
Sbjct: 173 MVHNGIEYGMMQAIAEGFELLKN--SPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFK-- 228
Query: 248 DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK 307
+ +L D+I + G G+WTV++A +L V AP IA +L R+ S +++ A K
Sbjct: 229 ---KDPDL-DQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRS--RQDDTFAGK 282
Query: 308 VLKEAGLKDEVQNVGVHVDKK 328
VL A L++E G H KK
Sbjct: 283 VL--AALRNE---FGGHAVKK 298
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 2e-57
Identities = 102/303 (33%), Positives = 161/303 (53%), Gaps = 21/303 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++GL GL MG N+A + E G + Y+ VD G+L +T ++ + V
Sbjct: 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVA-------GKLGITARHSLEELV 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
++ PR++ ++V AG + I L +SPGD ++DGGN Y + RR E +++G+
Sbjct: 55 SKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH 114
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
Y+ G SGG G R+G LM GG E Y+ + + + +A +GP + G GSG+F+
Sbjct: 115 YVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAP---EGPGYVHAGPVGSGHFL 171
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKV 246
KMVHNGIEYG MQ +E ++L + ++ ++ W G + S+L+++T
Sbjct: 172 KMVHNGIEYGMMQAYAEGLELLDKSD--FDFDVEDVARLWRNGSVIRSWLLDLTVKALA- 228
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
E + I G G+WTV++A EL+VAAP IAASL R+ S +E+
Sbjct: 229 -----EDPKLAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFAS--QEDDSFHM 281
Query: 307 KVL 309
KV+
Sbjct: 282 KVV 284
|
Length = 299 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 6e-57
Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 19/178 (10%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
++IG GL VMG +ALN+ + G+ ++VYNRT KV+E + G +P +F
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEG-------AVGAASPAEF 53
Query: 67 VLSIQRPRSVIILVKAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123
V S VI +V AG+ VD I L + PGD IIDG +T RR E ++
Sbjct: 54 VASA---DVVITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAE 110
Query: 124 KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
KG+ +L VSGGEEGA G S+M GG EA+ ++ IL+ + A YIG
Sbjct: 111 KGIHFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGAC-----VTHYIGP 163
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 3e-49
Identities = 108/324 (33%), Positives = 162/324 (50%), Gaps = 29/324 (8%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-TLDRAHREGQLPLTGHYTPRDF 66
++GL GL MG N+ +A++G Y+ V DR TG R+
Sbjct: 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRT--------TGVANLREL 53
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
+ PR V ++V G VD + L+ + GD +IDGGN +Y ++ RR +KG+
Sbjct: 54 SQRLSAPRVVWVMVPHGI-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGI 112
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
L G SGG G G M GG EA+ + VA + + G Y G GSG+F
Sbjct: 113 HLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPE-EQG--YLYCGPCGSGHF 169
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFK 245
VKMVHNGIEYG M I+E +++L++ + ++ E+ W +G + S+L+++TA F+
Sbjct: 170 VKMVHNGIEYGMMAAIAEGFEILRN--SQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFR 227
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
E + + + G G+WTV A +L V AP IA SL R+ S ++ + A
Sbjct: 228 ---ESPDLAEFSGRVSDS---GEGRWTVIAAIDLGVPAPVIATSLQSRFAS--RDLDDFA 279
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKR 329
KVL A L+ E G H +KK+
Sbjct: 280 NKVL--AALRKE---FGGHAEKKK 298
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+I GL +MG +A N+ + G ++VYNRT K E L T +P +
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA------AAGATVAASPAEA 54
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT-----ERRI 118
VI ++ + V + L E + PG +ID ++T R +
Sbjct: 55 A---AEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID------MSTISPETAREL 105
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ KGL +L VSGG GA G ++M GG EA+ + +L+ + +
Sbjct: 106 AAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKN------IV 159
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206
++G G+G K+ +N + G++ ++EA
Sbjct: 160 HVGPVGAGQAAKLANNILLAGNIAALAEAL 189
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 24/204 (11%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG+ ++ N+ + G+ + VY+R V E + T +
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-------AAGAETASTAKA-- 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA----ALSEHMSPGDCIIDGGNEWYLNTERRIHEA-S 122
+ VII + SP + +A + E PG +ID + L R I A
Sbjct: 55 --VAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPL-ASREIAAALK 111
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
KG+ L VSGGE A G S+M GG ++ D+++ +A V + G+
Sbjct: 112 AKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV------VHTGDI 165
Query: 182 GSGNFVKMVHNGIEYGDMQLISEA 205
G+GN K+ + I ++ +SEA
Sbjct: 166 GAGNVTKLANQVIVALNIAAMSEA 189
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 3e-10
Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 26/242 (10%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG +++N+A+ G+ + V DE L + T R
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAE-------TAR--- 50
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA----ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123
+ VI + SP + +A + E PG ++D + + ++R +
Sbjct: 51 -QVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKE 109
Query: 124 KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGG 182
KG+ YL VSGGE GA G S+M GG ++ ++ + + + G + +G G
Sbjct: 110 KGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL------GKNIVLVGGNG 163
Query: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242
G K+ + I +++ +SEA G + + G S ++E+ +
Sbjct: 164 DGQTCKVANQIIVALNIEAVSEALVFASKAG----VDPVRVRQALRGGLAGSTVLEVKGE 219
Query: 243 IF 244
Sbjct: 220 RV 221
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 25/204 (12%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG +A+N+A G + V + + D G + + T R
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV-----TTIGPVADELLSLGAVSVE---TARQVT 53
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEH-----MSPGDCIIDGGNEWYLNTERRIHEAS 122
+ + I+V V++ + E+ G I+D + + T+R + +
Sbjct: 54 ---EASDIIFIMVPDTPQVEEVL--FGENGCTKASLKGKTIVDMSSISPIETKRFARQVN 108
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
+ G YL VSGGE GAR G S+M GG + ++ + + + G +T +G
Sbjct: 109 ELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL------GKNITLVGGN 162
Query: 182 GSGNFVKMVHNGIEYGDMQLISEA 205
G G K+ + I +++ +SEA
Sbjct: 163 GDGQTCKVANQIIVALNIEAVSEA 186
|
Length = 292 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 35/222 (15%)
Query: 13 GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQR 72
GL MG +A N+ + G P+ V++ V+E + +P + R
Sbjct: 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEGADR 55
Query: 73 PRSVIILVKAGSPVDQTIAALSEHMSPG--------DC-IIDGGNEWYLNTERRIHE-AS 122
VI ++ AG V + E + P DC ID ++ R++ E A+
Sbjct: 56 ---VITMLPAGQHVISVYSG-DEGILPKVAKGSLLIDCSTID------PDSARKLAELAA 105
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
G +++ VSGG GAR G + M GG E + +L + + + G+
Sbjct: 106 AHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN------IVHCGDH 159
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G+G K+ +N + M +EA L GL L EI
Sbjct: 160 GAGQAAKICNNMLLGISMIGTAEAM-ALGEKLGLDPKVLFEI 200
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404
+ A+G LL+ ++ + +A +W G +IR+ LD +A++++P+L +
Sbjct: 185 AIAEGFELLK----NSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI---- 236
Query: 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQAQRDLFGA 463
V R V A+ G+ P + +L F + + ++ A R+ FG
Sbjct: 237 ---SGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGG 293
Query: 464 HTYERID 470
H ++ +
Sbjct: 294 HAVKKKN 300
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404
+YA+G+ LL ++ + ++AR+W+ G +IR+ LD KA +P LA +
Sbjct: 185 AYAEGLELLDKSD----FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGI---- 236
Query: 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPA-NLVQAQRDLFGA 463
+ V R V AI ++ P + ASL + +V A R+ FG
Sbjct: 237 ---KGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG 293
Query: 464 HTYER 468
H +
Sbjct: 294 HAVKT 298
|
Length = 299 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 21/215 (9%)
Query: 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD 65
++ I GL MG +A N+ ++G + V++ VD +D+ +P
Sbjct: 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAA-------SPAQ 53
Query: 66 FVLSIQRPRSVIILVKAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS 122
+ VI ++ G V + + E +S +ID L T++ I +
Sbjct: 54 ---AAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQ 110
Query: 123 QKGLLYLGMGVSGGEEGARHGPSL-MPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
KG + + V + A G L + GG+ E IL + ++ + G
Sbjct: 111 AKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA------GGP 164
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216
G G VK+++N + L +EA VL GLS
Sbjct: 165 GMGIRVKLINNYMSIALNALSAEAA-VLCEALGLS 198
|
Length = 296 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 28/135 (20%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL---V 401
+YA+G LL ++L+ +A +W+ G +IR+ LD A +P L + V
Sbjct: 186 AYAEGFELLE----ASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYV 241
Query: 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRAR-----LPAN-LVQ 455
D R V+ AI + P + A+L + R R A+ +V
Sbjct: 242 EDSGEGRWTVE----------EAIDLAVPAPVIAAAL-----FMRFRSRQEDSFADKVVA 286
Query: 456 AQRDLFGAHTYERID 470
A R+ FG H ++ +
Sbjct: 287 ALRNGFGGHAVKKKE 301
|
Length = 301 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404
+ A+G +LR+ ++ + E+AR+W+ G +IR+ LD A++ +P+LA
Sbjct: 184 AIAEGFEILRNSQ----FDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF---- 235
Query: 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASL-SYFDTYRRARLPANLVQAQRDLFGA 463
V R V AI G+ P + SL S F + ++ A R FG
Sbjct: 236 ---SGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGG 292
Query: 464 HTYER 468
H ++
Sbjct: 293 HAEKK 297
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 505 | |||
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 100.0 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.93 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.92 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.91 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.91 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.91 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.89 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 99.88 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.88 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.85 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.84 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.84 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.83 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.82 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.82 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.82 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.81 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.8 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.79 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.77 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.77 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.77 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.77 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.75 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.74 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.72 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.72 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.7 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.69 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.69 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.67 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.66 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.65 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.65 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.64 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.64 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.64 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.63 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.63 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.61 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.61 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.61 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.6 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.59 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.59 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.59 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.58 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.57 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.56 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.56 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.54 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.52 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.5 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.5 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.43 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.43 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.4 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.39 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.39 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.38 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.38 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.37 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.37 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.37 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.37 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.36 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.36 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.35 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.35 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.34 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.34 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.33 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.32 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.31 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.3 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.27 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.26 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.26 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.26 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.24 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.14 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.09 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.09 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.06 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.05 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 99.02 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.0 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.99 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.98 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.98 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.95 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.95 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.95 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.94 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.93 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.93 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.89 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.84 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.78 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.77 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.75 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.75 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.71 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.69 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.69 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.66 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.66 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.64 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.63 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.61 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.61 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.61 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.59 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.59 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.58 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.56 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.53 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.5 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.46 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.4 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.36 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.35 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.34 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.32 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.26 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.25 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.25 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.24 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.19 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.18 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.12 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.09 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.05 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.05 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.05 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.97 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.96 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.96 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.95 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.93 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.89 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.86 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.86 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.86 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.86 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.85 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.84 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.84 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.82 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.82 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.81 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.8 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.8 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.79 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.76 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.76 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.76 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.75 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.7 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.69 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.68 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.68 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.67 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.66 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.66 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.65 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.64 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.64 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.63 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.63 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.62 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.61 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.61 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.61 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.6 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.6 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.6 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.55 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.55 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.54 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.53 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.52 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.51 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.51 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.49 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.48 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.47 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.46 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.42 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.42 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.39 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.39 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.38 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.38 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.38 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.37 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.33 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.32 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.32 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.29 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.28 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.25 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.24 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.24 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 97.23 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.22 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.2 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.2 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.18 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.16 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.15 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.14 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.13 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.11 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 97.09 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.06 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.06 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.05 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.01 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.99 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 96.99 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 96.98 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.97 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 96.93 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.9 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.9 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 96.87 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.85 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.83 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.81 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.81 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.76 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.76 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.73 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.72 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.72 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.72 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.69 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.68 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.68 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.65 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.64 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.63 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 96.62 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.62 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.6 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.6 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.6 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.59 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.58 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.57 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.56 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.55 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.53 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.52 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.5 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.44 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.43 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.42 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.38 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.37 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.36 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.36 | |
| PLN00106 | 323 | malate dehydrogenase | 96.36 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.33 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.32 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.32 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.32 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.29 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.21 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.21 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.18 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.17 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.17 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.16 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.16 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.15 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.13 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.13 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.08 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.06 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.04 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.03 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.99 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 95.98 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 95.98 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.98 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 95.97 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.96 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 95.94 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.93 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.91 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.91 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.91 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.9 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.88 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.88 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.83 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.82 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.81 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.79 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.75 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 95.73 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.69 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 95.66 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.65 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 95.6 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.59 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.57 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.54 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.49 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 95.49 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.49 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.47 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.47 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.46 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.42 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.41 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.41 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.4 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.37 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.37 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.37 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.37 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.31 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 95.3 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.28 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.28 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.27 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.27 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.24 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.17 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 95.14 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.12 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.09 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.08 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.06 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 95.06 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.05 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.03 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.02 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 95.01 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 95.0 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.0 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.99 | |
| PRK08223 | 287 | hypothetical protein; Validated | 94.99 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 94.96 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.95 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.94 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.91 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 94.91 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.89 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 94.89 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 94.88 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 94.87 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 94.85 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.85 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.84 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.84 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.83 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.81 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.8 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.78 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.76 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 94.76 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.74 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 94.74 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.7 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.7 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.69 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.68 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.67 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.65 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.64 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.64 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.63 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.62 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.61 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 94.61 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 94.59 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.58 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 94.57 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 94.55 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.54 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.53 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.51 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 94.5 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.47 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.47 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.46 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.45 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 94.44 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 94.44 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.42 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 94.39 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.38 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.36 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 94.35 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 94.32 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.32 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.29 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 94.27 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 94.24 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 94.23 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 94.22 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.22 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.22 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.21 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 94.2 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 94.19 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 94.18 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.16 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 94.15 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.12 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 94.12 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.1 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 94.08 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 94.07 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.06 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 94.06 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 94.05 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.01 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.01 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 93.99 | |
| PRK08643 | 256 | acetoin reductase; Validated | 93.99 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 93.99 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.97 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 93.96 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 93.92 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.9 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 93.88 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.86 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 93.83 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.83 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 93.81 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 93.8 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.8 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 93.8 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.78 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 93.77 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 93.76 | |
| PRK05868 | 372 | hypothetical protein; Validated | 93.72 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.71 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 93.71 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.67 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 93.64 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 93.64 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 93.62 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 93.61 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 93.59 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.57 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 93.57 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 93.56 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 93.52 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.51 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 93.43 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.42 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 93.42 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 93.39 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 93.37 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.32 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 93.3 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.3 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 93.28 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 93.27 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 93.26 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 93.25 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 93.21 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 93.2 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 93.19 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 93.19 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.19 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 93.16 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 93.15 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 93.14 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 93.1 |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-140 Score=1033.71 Aligned_cols=470 Identities=58% Similarity=0.952 Sum_probs=454.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+.+.||+||||+||++||+|++++||+|.+|||++++++++.++....+ ++.++.|++|++++|++|+.|++||.++.
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k--~i~~~~sieefV~~Le~PRkI~lMVkAG~ 79 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGK--NIVPAYSIEEFVASLEKPRKILLMVKAGT 79 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCC--CccccCcHHHHHHHhcCCceEEEEEecCC
Confidence 3578999999999999999999999999999999999999998765432 68999999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQK 164 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ 164 (505)
+||.++++|+|+|++||||||.+|+++.||.|+.+.|.++|++|++++||||++||++||+|||||++++|+.++|+|++
T Consensus 80 ~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~ 159 (473)
T COG0362 80 PVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTK 159 (473)
T ss_pred cHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhc
Q 010652 165 VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244 (505)
Q Consensus 165 iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l 244 (505)
|+||.+++|||.|+|+.|+|||||||||+|||+.||+|+|+|.+++...|++.++|.++|.+||+|.++|||++|+.++|
T Consensus 160 IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 160 IAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred HHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999777999999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccc
Q 010652 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVH 324 (505)
Q Consensus 245 ~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 324 (505)
+.+|+.++.+++|.|+|.++|||||+|+++.|.++|+|+|+|.+||++|++|+.|++|+.+++.|++|... .+
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~~-------~~ 312 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKLG-------EP 312 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCC-------CC
Confidence 99887777799999999999999999999999999999999999999999999999999999999988542 36
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchh
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.++..|+++|++|||+++|++|||||.+|++||++|+|+|++.+|++|||+||||||.||+.|+++|+++|++.|||++|
T Consensus 313 ~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~p 392 (473)
T COG0362 313 GDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAP 392 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCcccccccCCC
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLP 483 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~~~~ 483 (505)
+|.+.+.+.+.+||++|.+|++.|+|+|++|+||+|||+||++++|+|||||||||||||||+|+|++|.||++|++..
T Consensus 393 yF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 393 YFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998643
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-130 Score=946.93 Aligned_cols=477 Identities=61% Similarity=1.004 Sum_probs=453.4
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|+.-..++||+|||++||++|++|++++||.|++|||+..+++++.+...+. .++....|++|++..+++|++|++.|
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~--~~i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKG--TKIIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcC--CcccCCCCHHHHHHhcCCCcEEEEEe
Confidence 4433457899999999999999999999999999999999999999876542 36888999999999999999999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ 160 (505)
+++.+|+..+++|.|+|.+||+|||.+|+.+.+|.|+.+.+.++|+.|++++||||+++|+.||++||||++++|..+++
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ 158 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKD 158 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccc-CCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhh
Q 010652 161 ILQKVAAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~ 239 (505)
+|+.+++|+ +++|||.|+|+.|+|||||||||+|||+.||+|+|+|.++++.+|++.+++.++|..||++.+.|||++|
T Consensus 159 ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieI 238 (487)
T KOG2653|consen 159 IFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEI 238 (487)
T ss_pred HHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHH
Confidence 999999997 7899999999999999999999999999999999999999997779999999999999999999999999
Q ss_pred hhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccc
Q 010652 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (505)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (505)
+.+||+-+|+ .+.++++.|+|.++|||||+||++.|.++|+|+|+|.+||++|++|++|++|+.+++.+++|..+.
T Consensus 239 T~dIlk~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~--- 314 (487)
T KOG2653|consen 239 TADILKFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR--- 314 (487)
T ss_pred hHHHhheecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch---
Confidence 9999998765 455899999999999999999999999999999999999999999999999999999999986532
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCC
Q 010652 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (505)
Q Consensus 320 ~~~~~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ 399 (505)
....++..|++++++|+|+++|++|+|||+||++++++|+|+||+.+|+++||+||||||.||+.|.++|+++|+|.|
T Consensus 315 --~~~~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~n 392 (487)
T KOG2653|consen 315 --DMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLAN 392 (487)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhh
Confidence 233357899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCC-ccccc
Q 010652 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTE 478 (505)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~-~~h~~ 478 (505)
||+|+.|.+++.+.+.+||++|..|+++|||+|++|+||+|||+||++++|+||+||||||||||||++++++| .+|++
T Consensus 393 ll~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~Htn 472 (487)
T KOG2653|consen 393 LLLDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTN 472 (487)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred ccCCCCc
Q 010652 479 WTKLPAR 485 (505)
Q Consensus 479 w~~~~~~ 485 (505)
|++....
T Consensus 473 Wtg~gg~ 479 (487)
T KOG2653|consen 473 WTGHGGN 479 (487)
T ss_pred ecccCCc
Confidence 9975443
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-118 Score=943.21 Aligned_cols=468 Identities=60% Similarity=1.018 Sum_probs=440.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.+||++|+++||+|++|||++++++++.+...+.| ..+..+.+++|++++++++|+|++|||++.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGN-TRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcC-CcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 58999999999999999999999999999999999999887533211 13567889999999887899999999999999
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.++
T Consensus 81 ~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ia 160 (470)
T PTZ00142 81 DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCS 160 (470)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcc
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 245 (505)
++.+++||++|+|+.|+||++|||||+++|++|++++|++.+++ +.| ++++++.++|+.|+.|.+.||+++++.+++.
T Consensus 161 ~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~ 239 (470)
T PTZ00142 161 AKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKILA 239 (470)
T ss_pred hhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHHhh
Confidence 98778899999999999999999999999999999999999998 577 9999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccccccccc
Q 010652 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHV 325 (505)
Q Consensus 246 ~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 325 (505)
++|+.++.+.+|.|+|.++|||||+||+++|.++|||+|+|.+||++|++|.+|++|..+++.|++|..... ....
T Consensus 240 ~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~----~~~~ 315 (470)
T PTZ00142 240 KKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPANK----TETE 315 (470)
T ss_pred cccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccccc----cccc
Confidence 876533368999999999999999999999999999999999999999999999999999999987741100 1123
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+++||+|||||||||++|++|+|||+||++||++|+|++|+++|++|||+||||||+||+.|.++|+++|++.|||+++.
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~ 395 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPD 395 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCccccccc
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~ 480 (505)
|...+++..++|||+|..|++.|+|+|++|+||+||++|+++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 396 ~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 396 FNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-117 Score=932.38 Aligned_cols=483 Identities=86% Similarity=1.308 Sum_probs=447.1
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|....+++|||||||.||.+||+||+++||+|++|||++++++++.+.....|...+..+.|++|+++++++||+||+||
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 55556679999999999999999999999999999999999999887421111002446889999999988999999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ 160 (505)
|+++++++|++++++.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~p 160 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIED 160 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhccCCcchhhHhh
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~-g~l~~~~i~~~~~~~~~g~~~s~l~~~ 239 (505)
+|+.++++.++++|++|+|+.|+||++||+||++++++|++++|++.++++. | ++++++.++|+.|+.+.+.||++++
T Consensus 161 vL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 161 ILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHH
Confidence 9999999888888999999999999999999999999999999999999995 7 9999999999999999999999999
Q ss_pred hhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccc
Q 010652 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (505)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (505)
+.+++..+++++++|.++.++||++|||||+|++++|.++|+|+|+|.+++.+|+.|++|++|..+++.+++|..... .
T Consensus 240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~-~ 318 (493)
T PLN02350 240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDI-L 318 (493)
T ss_pred HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCcccc-c
Confidence 999988766687789999999999999999999999999999999999999999999999999999999987621100 0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCC
Q 010652 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (505)
Q Consensus 320 ~~~~~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ 399 (505)
......+...|+++|++|+|+++|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||+.|.++|+++|+++|
T Consensus 319 ~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~ 398 (493)
T PLN02350 319 SADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLAS 398 (493)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhh
Confidence 00012356789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCcccccc
Q 010652 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479 (505)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w 479 (505)
||+++.|.+.+.+..++|||+|..|++.|+|+|+||+||+||++|+++++|+|||||||||||+|||+|+|++|.||++|
T Consensus 399 l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w 478 (493)
T PLN02350 399 LLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEW 478 (493)
T ss_pred hcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 010652 480 TKLPAR 485 (505)
Q Consensus 480 ~~~~~~ 485 (505)
++.+..
T Consensus 479 ~~~~~~ 484 (493)
T PLN02350 479 TKLARK 484 (493)
T ss_pred hhhcCc
Confidence 865543
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-116 Score=925.91 Aligned_cols=454 Identities=58% Similarity=0.970 Sum_probs=432.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhh
Q 010652 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSE 95 (505)
Q Consensus 17 mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~ 95 (505)
||.+||+||+++||+|++|||++++++++.+. +... +++.+.|++|+++++++||+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3211 3688999999999888899999999999999999999999
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhhccc-CCCCc
Q 010652 96 HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPC 174 (505)
Q Consensus 96 ~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~iga~~-~~~~~ 174 (505)
.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++++ ++++|
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 88899
Q ss_pred EEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCc
Q 010652 175 VTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEG 253 (505)
Q Consensus 175 v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~ 253 (505)
++|+|+.|+||++|||||+|+|++|++++|++.++++ .| ++++++.++|+.||.|.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 67 999999999999999999999999999999875532566
Q ss_pred hhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccchhhHHHH
Q 010652 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDD 333 (505)
Q Consensus 254 ~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 333 (505)
+++|.|+|.++|||||+||+++|.++|||+|+|.+|+++|+.|.++++|..+++.|.+|.. ....+++||+||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-------~~~~~~~~~i~~ 309 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-------KFEGDKAEFIED 309 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-------cccccHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987742 112356899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhHhHHHHhh
Q 010652 334 VRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR 413 (505)
Q Consensus 334 v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~ 413 (505)
||||||||+|++|+|||+||++||++|+|++|+.+|++|||+||||||+||+.|.++|+++|+++|||+++.|...+++.
T Consensus 310 v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~ 389 (459)
T PRK09287 310 VRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEY 389 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCcccccccC
Q 010652 414 QAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 414 ~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
.++|||+|..|++.|+|+|+||+||+||++|+++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 390 ~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 390 QDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-115 Score=921.03 Aligned_cols=463 Identities=59% Similarity=0.977 Sum_probs=437.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.+++||+|++|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 599999999999999999999999999999999999988752110 025677899999988888999999999999999
Q ss_pred HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhhc
Q 010652 88 QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAA 167 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~iga 167 (505)
++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhccc
Q 010652 168 QVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 168 ~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (505)
++++++|++|+|+.|+||++|||||+++|++|++++|++.|++ +.| ++++++.++|+.||.+.+.||+++++.+++.+
T Consensus 159 ~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~ 237 (467)
T TIGR00873 159 KVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILKK 237 (467)
T ss_pred hcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHhc
Confidence 8877899999999999999999999999999999999999997 577 99999999999999999999999999999998
Q ss_pred ccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccc
Q 010652 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+|+ .+.+++|.|+|.++|||||+||+++|.++|||+|+|.+|+++|+.|..|++|..+++.|.+|... ....+
T Consensus 238 ~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~------~~~~~ 310 (467)
T TIGR00873 238 KDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP------EPAVD 310 (467)
T ss_pred cCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc------ccccc
Confidence 765 45689999999999999999999999999999999999999999999999999999999876421 12235
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhH
Q 010652 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
++||+||||||||||+|++|+|||+||++||++|+|++|+++|++|||+||||||+||++|.++|+++|+++|||+|+.|
T Consensus 311 ~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~ 390 (467)
T TIGR00873 311 KEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYF 390 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCC--ccccccc
Q 010652 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG--SFHTEWT 480 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~--~~h~~w~ 480 (505)
...+++..++|||+|..|++.|+|+|+||+||+||++||++++|+|||||||||||+|||+|+|++| .||++|+
T Consensus 391 ~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~ 466 (467)
T TIGR00873 391 KDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466 (467)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999996
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-90 Score=675.30 Aligned_cols=291 Identities=62% Similarity=1.029 Sum_probs=249.0
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhh
Q 010652 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKT 263 (505)
Q Consensus 184 g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~ 263 (505)
|||||||||+|||++||+++|+|.++++..|++++++.++|+.||+|.++|||++++.+++++++ .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976569999999999999999999999999999999876 56789999999999
Q ss_pred CCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccchhhHHHHHHHHHHHHHH
Q 010652 264 GMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKI 343 (505)
Q Consensus 264 ~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ai~~~~i 343 (505)
+|||||+|++++|.++|||+|+|++||++|++|+.|++|..+++.+++|.... ....+...|+++|++|+|+|+|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~~-----~~~~~~~~~i~~l~~Aly~~~i 154 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKFD-----ESKEDKEEFIEDLRKALYAAKI 154 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-ST-----TS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhcccccccc-----cccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998874110 2345678999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhHhHHHHhhhhHHHHHHHH
Q 010652 344 CSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423 (505)
Q Consensus 344 ~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v~~ 423 (505)
++|+|||+||++||++|+|++|+++|++|||+||||||.||++|.++|+++|+++|||++|.|.+.+++..++|||+|..
T Consensus 155 ~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ 234 (291)
T PF00393_consen 155 ISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSL 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCccccccc
Q 010652 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (505)
Q Consensus 424 a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~ 480 (505)
|++.|+|+|++++||+|||+++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 235 ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 235 AIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999995
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=441.42 Aligned_cols=298 Identities=28% Similarity=0.506 Sum_probs=269.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+||+||||.||.+|+++|.+.||+|++||+|++.++++...+ ++..+|+++++..|..|++|.+|||++..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5899999999999999999999999999999999999998775 466889999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.|++||+|||.+|+++.++.++.+.++++|++|+|++.|||..+++.|-++|+|||+++++++.|+|++++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhccc
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (505)
+. .
T Consensus 154 ------~g-----------------------------------------------------------------------e 156 (300)
T COG1023 154 ------PG-----------------------------------------------------------------------E 156 (300)
T ss_pred ------cC-----------------------------------------------------------------------c
Confidence 32 0
Q ss_pred ccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccc
Q 010652 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+.| .+-+| .+
T Consensus 157 -~Gy---------------------------------------------------------l~~Gp------------~G 166 (300)
T COG1023 157 -DGY---------------------------------------------------------LYCGP------------SG 166 (300)
T ss_pred -Ccc---------------------------------------------------------ccccC------------CC
Confidence 000 01123 26
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhH
Q 010652 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
+|||+|||||+|||++|++|+|||+||+++ .+++|+++|+++||.|+.|||+||+.+.++|+++|+|+.+- ..+
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v 240 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRV 240 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Cee
Confidence 899999999999999999999999999965 58899999999999999999999999999999988764322 223
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH-HHHhhccCChhhhHHHHHhhhhcCcccccc
Q 010652 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLS-YFDTYRRARLPANLVQAQRDLFGAHTYERI 469 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~-y~~~~~~~~~~a~liqaqRd~FG~H~~~r~ 469 (505)
. .++++ ||+|++|++.|+|+|+|+.||. .|.|.+......+++.|+|..||.|..++.
T Consensus 241 ~---dSGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 241 S---DSGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred c---cCCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 3 37889 9999999999999999999999 788888888999999999999999998775
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-56 Score=447.62 Aligned_cols=295 Identities=28% Similarity=0.495 Sum_probs=257.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|+++||+|.+|||++++++++.+.+ .....+++++++.+..+|+|++|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 4799999999999999999999999999999999999888754 244578888887777799999999998 89
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhccc
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (505)
.+. +.++|+|+.
T Consensus 153 ~~~---~~~~~~G~~----------------------------------------------------------------- 164 (298)
T TIGR00872 153 PEE---QGYLYCGPC----------------------------------------------------------------- 164 (298)
T ss_pred CcC---CCEEEECCc-----------------------------------------------------------------
Confidence 210 012222221
Q ss_pred ccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccc
Q 010652 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+
T Consensus 165 -------------------------------------------------------------------------------G 165 (298)
T TIGR00872 165 -------------------------------------------------------------------------------G 165 (298)
T ss_pred -------------------------------------------------------------------------------c
Confidence 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhH
Q 010652 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
+++++|++||++++++|++|+|||.|++++ +|++|+++++++|++||+|||++|+.+.++|++++.++ .|
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~------~~ 235 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLA------EF 235 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHH------HH
Confidence 345678888888888888888888888865 89999999999999999999999999999999887543 35
Q ss_pred hHHH-HhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccC-ChhhhHHHHHhhhhcCccccc
Q 010652 407 AREM-VQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRA-RLPANLVQAQRDLFGAHTYER 468 (505)
Q Consensus 407 ~~~~-~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~-~~~a~liqaqRd~FG~H~~~r 468 (505)
...+ +++++ ||+|.+|++.|+|+|++++||.|++.+++. ++|+|||||||||||+|+|++
T Consensus 236 ~~~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 236 SGRVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCC
Confidence 5554 44445 999999999999999999999999999988 999999999999999999987
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=390.71 Aligned_cols=299 Identities=31% Similarity=0.540 Sum_probs=249.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||++|+++|++|++|||++++++++.+.+ ...+.+++|+++.++.+|+|++++|++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4899999999999999999999999999999999998886643 467789999988655579999999998789
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|+++||+||+.|..++++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhccc
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (505)
.+.+ ..++|+|+.|+|+++|+++
T Consensus 154 ~~~~--~~~~~~G~~G~g~~~Kl~~------------------------------------------------------- 176 (301)
T PRK09599 154 PRAE--DGYLHAGPVGAGHFVKMVH------------------------------------------------------- 176 (301)
T ss_pred cccc--CCeEeECCCcHHHHHHHHH-------------------------------------------------------
Confidence 2100 1688888766555544444
Q ss_pred ccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccc
Q 010652 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
T Consensus 177 -------------------------------------------------------------------------------- 176 (301)
T PRK09599 177 -------------------------------------------------------------------------------- 176 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhH
Q 010652 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
|+++++.+++|+|+|.|+++ ++|++|+++++++|++||+++|++|+....++.+++.. +.+
T Consensus 177 ---------n~l~~~~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~ 237 (301)
T PRK09599 177 ---------NGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEI 237 (301)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHH
Confidence 44444555555666666654 56778888888888888888888888888888665432 112
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHH-HHhhccCChhhhHHHHHhhhhcCcccccc
Q 010652 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQAQRDLFGAHTYERI 469 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y-~~~~~~~~~~a~liqaqRd~FG~H~~~r~ 469 (505)
...++. ...+||++..|.+.|+|+|++++++.| |.++....+|.|++||||||||+|+|+|.
T Consensus 238 ~~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 238 SGYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 222222 333499999999999999999999998 99999999999999999999999999995
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=369.94 Aligned_cols=256 Identities=26% Similarity=0.412 Sum_probs=239.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+||||||+|.||.+||.||.++||+|++|||++++ .+.+.+.+ .....++.|+++. +|+||+|||++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 48999999999999999999999999999999999 44444444 4678899999998 9999999999999
Q ss_pred HHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
+++|+ +++.+.+++|.++||+||..|..++++.+.++++|++|+|+|||||+.++..|+ +||+||+++.|++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 579999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhh
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (505)
|+.+| ++++|+|+.|+|+.+||+||.+..+.+++++|++.++++.| +|++.+.+++ +.+..+||.++.+.
T Consensus 151 l~~~g------~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~~ 220 (286)
T COG2084 151 LEAMG------KNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENYG 220 (286)
T ss_pred HHHhc------CceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhhc
Confidence 99999 88999999999999999999999999999999999999999 9999999997 67788999999998
Q ss_pred hhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 242 ~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+.+.. ++|+++|.++++.||++ ++.++|+++|+|+|+.+.+
T Consensus 221 ~~m~~-~~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~ 261 (286)
T COG2084 221 PRMLE-GDFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA 261 (286)
T ss_pred chhhc-CCCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH
Confidence 76665 45999999999999997 9999999999999998865
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=368.16 Aligned_cols=207 Identities=34% Similarity=0.605 Sum_probs=182.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|+++|++|++|||++++.+.+.+.+ ...+.+++++++..+.+|+|++|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4799999999999999999999999999999999988876543 466789999987644469999999998889
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++||+|++.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEI 223 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~~ 223 (505)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| |+|++++.++
T Consensus 154 ~~~---~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 154 PEG---PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred CcC---CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 311 27999999999999999999999999999999888777654 2444444443
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=337.41 Aligned_cols=263 Identities=23% Similarity=0.350 Sum_probs=244.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||.+|+.||.++||+|+||||+.+++++|.+.|+ ..+++|.|+++. +|+||.|||++.+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPKD 104 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChHh
Confidence 568999999999999999999999999999999999999998764 568999999998 9999999999999
Q ss_pred HHHHH---HHHhhccCCCCEE-EeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010652 86 VDQTI---AALSEHMSPGDCI-IDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~ii-Id~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ 160 (505)
+++++ .+++..+++|... ||.||+.|..++++.+.+..++..|+|+|||||..+|+.|. +||+|||++.++++.+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 99998 4566777788877 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhh
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (505)
+|+.+| ++++|+|..|.|..+|+++|.+....|..++|++.++.+.| +|+..+.+++ |.|...|+.+...
T Consensus 185 ~~~~mG------k~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~~~ 254 (327)
T KOG0409|consen 185 VFKLMG------KNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFYNP 254 (327)
T ss_pred HHHHhc------ceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHhCc
Confidence 999999 89999999999999999999999999999999999999999 9999999998 6788899999998
Q ss_pred hhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
.+.+.+ ++|.|+|.++++.||++ ++..+|.+.++|+|+.+.| .+-|.+
T Consensus 255 ~p~m~k-~dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA-~qly~~ 302 (327)
T KOG0409|consen 255 VPGMLK-GDYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA-HQLYKS 302 (327)
T ss_pred Cchhhc-CCCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH-HHHHHH
Confidence 877765 45999999999999997 8999999999999999887 445444
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=333.13 Aligned_cols=261 Identities=22% Similarity=0.340 Sum_probs=234.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||++|.++||+|.+|||++. .+++.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 46555432 4567899998887 99999999999889
Q ss_pred HHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
++++ +++.+.+.+|++|||+||+.|.+++++.+.+.++|+.|+++||+|++.+++.|. .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 9988 346777889999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ ++++|+|+.|+|+.+|+++|.+..+.+++++|++.++++.| +|++++.+++ +.+.+.|++++.+.+
T Consensus 150 ~~~g------~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~~ 219 (292)
T PRK15059 150 ELLG------KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHGE 219 (292)
T ss_pred HHHc------CCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhch
Confidence 9999 78999999999999999999999999999999999999999 9999999987 567788999998887
Q ss_pred hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
.+.. ++|+++|.++.+.||+. ++++.|++.|+|+|+...+ .+.|-.
T Consensus 220 ~~~~-~~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 265 (292)
T PRK15059 220 RMIK-RTFNPGFKIALHQKDLN------LALQSAKALALNLPNTATC-QELFNT 265 (292)
T ss_pred hhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 6654 56889999999999996 9999999999999988754 444433
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=325.93 Aligned_cols=263 Identities=22% Similarity=0.275 Sum_probs=232.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ ...+.++.++++. +|+||+|+|+..++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHHH
Confidence 4899999999999999999999999999999999998887653 3567789888887 99999999998778
Q ss_pred HHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
+.++ +++.+.+++|.++||+||..|.+++++.+.+.++|+.|+|+||+|++..+..|. .+|+||+++++++++|+|
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l 151 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPIL 151 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHH
Confidence 8887 357778889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ +.++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++ +.+...++.+....+
T Consensus 152 ~~~g------~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l---~~~~~~~~~~~~~~~ 221 (296)
T PRK15461 152 MAMG------NELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVM---SGTAAGKGHFTTTWP 221 (296)
T ss_pred HHHc------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccChHHHcccc
Confidence 9999 78999999999999999999999999999999999999999 9999999987 444445555554432
Q ss_pred -hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcc
Q 010652 243 -IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 243 -~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~ 297 (505)
.+.. ++|+++|.++.+.||++ ++.++|.++|+|+|+...+ .++|..+
T Consensus 222 ~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 269 (296)
T PRK15461 222 NKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQA 269 (296)
T ss_pred chhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 4443 56889999999999997 9999999999999998765 4555443
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=316.98 Aligned_cols=259 Identities=22% Similarity=0.296 Sum_probs=232.0
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHH
Q 010652 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTI 90 (505)
Q Consensus 11 iIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl 90 (505)
|||+|.||.+||.+|+++||+|++|||++++++.+.+.+ ...+.++.+++++ +|+||+|||++.++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999998887653 4567899999887 999999999988889998
Q ss_pred ---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHhh
Q 010652 91 ---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 91 ---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|+ .+|+||+++.+++++|+|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 788888999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhh---
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI--- 243 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~--- 243 (505)
+.++|+|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.||..+.+.+.
T Consensus 151 ------~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~~ 220 (288)
T TIGR01692 151 ------RNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPGV 220 (288)
T ss_pred ------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCccc
Confidence 78999999999999999999999999999999999999999 9999999987 5667778877765432
Q ss_pred ---cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 244 ---FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 244 ---l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
....++|+++|.++.+.||++ ++.+.|.+.|+|+|+...+ .+.|..
T Consensus 221 ~~~~~~~~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 269 (288)
T TIGR01692 221 MPQAPASNGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSL 269 (288)
T ss_pred cccccccCCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 112256889999999999997 9999999999999998765 445443
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=361.02 Aligned_cols=263 Identities=17% Similarity=0.279 Sum_probs=241.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
..+|||||+|.||.+||.||+++||+|++|||++++++++.+.+ ...++|+.|+++. +|+||+|||++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHH
Confidence 45899999999999999999999999999999999999998764 3678999999998 9999999999999
Q ss_pred HHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcC--CeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010652 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~g--i~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~ 159 (505)
+++|+ +++++.+.+|++|||+||..|.+++++.+.+.++| +.|+|+||+||+.+|+.|. ++|+||+++++++++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~ 153 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQ 153 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHH
Confidence 99998 57888899999999999999999999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHhhcccCCCCcEEEe-CCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHh
Q 010652 160 DILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~-G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~ 238 (505)
|+|+.+| +.++++ |+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++.+.+++ +.+.+.|+.++
T Consensus 154 p~l~~~g------~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~~ 223 (1378)
T PLN02858 154 PFLSAMC------QKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIFK 223 (1378)
T ss_pred HHHHHhc------CceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHHH
Confidence 9999999 677764 99999999999999999999999999999999999 9999999998 67788899999
Q ss_pred hhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 239 ITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 239 ~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
.+.+.+.. ++|.++|.++.+.||++ +++++|.++|+|+|+...+ .++|..
T Consensus 224 ~~~~~~~~-~d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~~~ 273 (1378)
T PLN02858 224 NHVPLLLK-DDYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQLIS 273 (1378)
T ss_pred hhhhHhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 88876655 56889999999999997 9999999999999998765 455533
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=306.38 Aligned_cols=263 Identities=21% Similarity=0.316 Sum_probs=235.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||.++|.+|+++|++|.+|||++++.+++.+.+ ...++++++++++ +|+||+|+|+...
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 46899999999999999999999999999999999988776543 4567789998877 9999999999888
Q ss_pred HHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
++.++ +++.+.+.+|++|+|+||..|.+++++.+.+.++|++|+++|++|++..+..|. .+|+||+++++++++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 568888899999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhh
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ ..++++|+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+.+.|++++.+.
T Consensus 152 l~~~~------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~~ 221 (296)
T PRK11559 152 MKAMA------GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKA 221 (296)
T ss_pred HHHhc------CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhc
Confidence 99999 78899999999999999999999999999999999999998 9999998886 56777888888877
Q ss_pred hhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 242 ~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
+.+.. ++|.++|.++...||++ .+++.|++.|+|+|+...+ .++|..
T Consensus 222 ~~~~~-~d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 268 (296)
T PRK11559 222 PMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQA 268 (296)
T ss_pred hHhhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 66544 45888899999999986 8999999999999998875 455544
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=303.75 Aligned_cols=262 Identities=21% Similarity=0.354 Sum_probs=235.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++++++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999988887653 3456788888887 999999999988888
Q ss_pred HHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHH
Q 010652 88 QTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 88 ~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~ 163 (505)
.++ +.+.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+|+||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 457778889999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhh
Q 010652 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 164 ~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (505)
.++ +.++++|+.|+|+.+|+++|.+....+++++|++.++++.| ++++++.+++ +.+.+.|++++.+.+.
T Consensus 151 ~lg------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~~ 220 (291)
T TIGR01505 151 ALG------KNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGER 220 (291)
T ss_pred Hhc------CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhChh
Confidence 999 78999999999999999999999999999999999999998 9999999998 5566789999888766
Q ss_pred cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcc
Q 010652 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~ 297 (505)
+.. ++|.++|.++.+.||+. ++.+.|.+.|+|+|+..++ .++|..+
T Consensus 221 ~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 221 VID-RTFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 654 56888999999999997 8999999999999998876 4454443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=346.25 Aligned_cols=266 Identities=18% Similarity=0.247 Sum_probs=239.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+.++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ .....+++++++. +|+||+|||++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~~~~ 392 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVANEV 392 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecCChH
Confidence 447899999999999999999999999999999999999887654 3457899999987 999999999999
Q ss_pred hHHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--cCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHH
Q 010652 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNI 158 (505)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v 158 (505)
++++++ .++++.+.+|++|||+||+.|..++++.+.+.+ +|++|+++||+||+.++..|. ++|+||++++++++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~ 472 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSA 472 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHH
Confidence 999998 467888889999999999999999999999998 899999999999999999999 99999999999999
Q ss_pred HHHHHHhhcccCCCCcEEEe-CCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhH
Q 010652 159 RDILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLV 237 (505)
Q Consensus 159 ~~ll~~iga~~~~~~~v~~~-G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~ 237 (505)
+|+|+.++ +.++++ |+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++++.+++ +.+.+.||.+
T Consensus 473 ~plL~~lg------~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~s~~~ 542 (1378)
T PLN02858 473 GSVLSALS------EKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGTSWMF 542 (1378)
T ss_pred HHHHHHHh------CcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccChhh
Confidence 99999999 677774 67999999999999999999999999999999999 9999999998 5667788988
Q ss_pred hhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHccc
Q 010652 238 EITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGL 298 (505)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~ 298 (505)
+.+.+.+.. ++|+++|.++.+.||++ ++.+.|.++|+|+|+...+ .++|..+.
T Consensus 543 ~~~~~~~l~-~d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a~ 595 (1378)
T PLN02858 543 ENRVPHMLD-NDYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTVA-HQLFLAGS 595 (1378)
T ss_pred hhccchhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 877766554 56889999999999997 8999999999999998765 55665543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=245.51 Aligned_cols=159 Identities=28% Similarity=0.489 Sum_probs=142.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ .+.++|++|++++ +|+|++|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 46899999999999999999999999999999999999998764 5789999999998 9999999999999
Q ss_pred HHHHHHH--HhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 86 VDQTIAA--LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 86 v~~vl~~--l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
+++++.+ +.+.+.+|++|||+||..|.+++++.+.+.++|++|+|+||+||+.+++.|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHhhcccCCCCcEE-EeCC
Q 010652 163 QKVAAQVDDGPCVT-YIGE 180 (505)
Q Consensus 163 ~~iga~~~~~~~v~-~~G~ 180 (505)
+.++ .+++ ++||
T Consensus 151 ~~~~------~~v~~~~G~ 163 (163)
T PF03446_consen 151 EAMG------KNVYHYVGP 163 (163)
T ss_dssp HHHE------EEEEEE-ES
T ss_pred HHHh------CCceeeeCc
Confidence 9999 6788 4575
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=255.21 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=205.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~---------------~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+.. ...| +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 4799999999999999999999999999999999988776421 0011 36777888888776
Q ss_pred CCcEEEEecCCCc---------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--CCe-EEcCCCCCChhh
Q 010652 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLL-YLGMGVSGGEEG 139 (505)
Q Consensus 72 ~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--gi~-~v~~pvsgg~~~ 139 (505)
+|+||+|||++. .+..+++++.+.+.+|++||++||..|.+++++...+.++ |.. +.++|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 999999999874 3778888999999999999999999999999987666544 443 567888888888
Q ss_pred hhcCC---------cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 010652 140 ARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 140 a~~G~---------~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
+..|. .+++|+++++.++++++|+.++. ..++++++.++|+++|+++|.+.+..+++++|+..+++
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~ 230 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIE-----DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 230 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcc-----CCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776 57899999999999999999971 25788999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCch--hHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 211 HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~--~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| +|++++.+++ +.+. .+.. ..+.|+| ....+.||+. +....|.++|+++|++.+
T Consensus 231 ~~G-iD~~~v~~~~---~~~~----------~i~~--~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 288 (411)
T TIGR03026 231 ALG-IDVYEVIEAA---GTDP----------RIGF--NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELIEA 288 (411)
T ss_pred HhC-CCHHHHHHHh---CCCC----------CCCC--CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHHHH
Confidence 999 9999999886 2221 1111 2244443 3445778875 788999999999999987
Q ss_pred H
Q 010652 289 S 289 (505)
Q Consensus 289 A 289 (505)
+
T Consensus 289 ~ 289 (411)
T TIGR03026 289 A 289 (411)
T ss_pred H
Confidence 6
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=227.42 Aligned_cols=206 Identities=13% Similarity=0.077 Sum_probs=169.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh------------hcCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL------------SIQRP 73 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~------------~l~~a 73 (505)
+++|+|||+|.||.++|.+|+++||+|++||+++++++.+..... .+ ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 478999999999999999999999999999999999987542210 00 1122222221 01249
Q ss_pred cEEEEecCCC---------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCC--------------eEEc
Q 010652 74 RSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL--------------LYLG 130 (505)
Q Consensus 74 dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi--------------~~v~ 130 (505)
|+||+|||++ ..+.++++++.+.+++|++||+.||+.|.+++++...+.+++. +++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999997 5788888999999999999999999999999999888876543 3455
Q ss_pred CC--CCCChhhhhcCC-cccCCC-CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHH
Q 010652 131 MG--VSGGEEGARHGP-SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (505)
Q Consensus 131 ~p--vsgg~~~a~~G~-~i~~gg-~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~ 206 (505)
+| +.+|...+..+. ..++|| +++++++++++|+.++ +.++++++.++|+++|+++|.+.+..+++++|+.
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~------~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFL------EGECVVTNSRTAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhc------CCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 666655555554 567788 9999999999999999 6678899999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 010652 207 DVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~~~ 224 (505)
.+|++.| +|++++.+.+
T Consensus 231 ~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 231 LICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHhC-CCHHHHHHHh
Confidence 9999999 9999998886
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-24 Score=222.30 Aligned_cols=249 Identities=12% Similarity=0.131 Sum_probs=184.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc------------cCCCCeeeeCCHHHHHhhcCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR------------EGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~------------~g~~~i~~~~s~~e~v~~l~~ 72 (505)
..|+|||||+|.||.+||.+|++ ||+|++||+++++++.+. .+.. .| ++..+++. +.++.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~~-~~~~~--- 76 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSEI-EKIKE--- 76 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeCH-HHHcC---
Confidence 45799999999999999999887 699999999999999987 3321 01 23444444 45555
Q ss_pred CcEEEEecCCC---------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--cCCeEEc--------CCC
Q 010652 73 PRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLG--------MGV 133 (505)
Q Consensus 73 advIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~gi~~v~--------~pv 133 (505)
+|++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+.+.+ .|..+.+ .++
T Consensus 77 advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v 156 (425)
T PRK15182 77 CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERI 156 (425)
T ss_pred CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcC
Confidence 99999999988 3445555789999999999999999999999986554433 3555443 456
Q ss_pred CCChhhhhcCC--cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 010652 134 SGGEEGARHGP--SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH 211 (505)
Q Consensus 134 sgg~~~a~~G~--~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~ 211 (505)
.+|......+. .++.|++++..+.++++++.+.. ..++++++.++|+++|+++|.+.+..+++++|+..++++
T Consensus 157 ~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~ 231 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIIS-----AGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNR 231 (425)
T ss_pred CCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhh-----cCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554443 57778888888999999999872 236788999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 212 VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 212 ~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
.| +|.+++.++. +.. |.+.. ... +.+++.++ -+|. ++.+..+.++|++.+++.+|
T Consensus 232 ~G-iD~~~v~~a~---~~~----~~~~~----~~p-G~vGG~Cl----pkD~------~~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 232 LN-IDTEAVLRAA---GSK----WNFLP----FRP-GLVGGHCI----GVDP------YYLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred hC-cCHHHHHHHh---cCC----CCccc----CCC-Cccccccc----cccH------HHHHHHHHhcCCCcHHHHHH
Confidence 99 9999998885 221 21111 111 11334332 2232 14456788999998888876
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-24 Score=218.21 Aligned_cols=282 Identities=13% Similarity=0.044 Sum_probs=203.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----C-CC--CeeeeCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-QL--PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g-~~--~i~~~~s~~e~v~~l~~advIil 78 (505)
+|+|+|||+|.||..+|.+|+++||+|++|+|++++.+.+...+.+. | .. ++..+++++++++. +|+||+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADFAVV 80 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCEEEE
Confidence 46899999999999999999999999999999999888777542110 0 00 24567788887776 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCC-Chhh--HHHHHHHHHH---cCCeEEcCCCCCChhhhhcCC-cccCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLN--TERRIHEASQ---KGLLYLGMGVSGGEEGARHGP-SLMPGGS 151 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~--t~~~~~~l~~---~gi~~v~~pvsgg~~~a~~G~-~i~~gg~ 151 (505)
++|+. ++++++ +.+.++.++|+++|+ .+.+ .+.+.+.+.+ +++.+++.|....+.+...+. .++.|++
T Consensus 81 ~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 81 AVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred ECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 99996 566655 445678899999995 4443 5566666655 566666666543333333345 7789999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEE--------EeCC---------CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCC
Q 010652 152 FEAYNNIRDILQKVAAQVDDGPCVT--------YIGE---------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~~~~~~v~--------~~G~---------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
++.+++++++|+..+. .++ ++|. .|++..+|+.+|......++.++|+..++++.|
T Consensus 156 ~~~~~~v~~ll~~~~~------~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G- 228 (328)
T PRK14618 156 PGLARRVQAAFSGPSF------RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG- 228 (328)
T ss_pred HHHHHHHHHHhCCCcE------EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhC-
Confidence 9999999999998884 333 3443 589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcc-CCcchhhHhhhhh--hcccc---cccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 215 LSNAELAEIFDEWNK-GELESFLVEITAD--IFKVK---DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 215 l~~~~i~~~~~~~~~-g~~~s~l~~~~~~--~l~~~---~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
++++.+.++....+- +...|+..+.+.. .+.++ +++.++|.+....+|+. .+.+.+.++|+++|++.+
T Consensus 229 ~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~Pl~~~ 302 (328)
T PRK14618 229 AEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDLPIVEA 302 (328)
T ss_pred CCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCCCHHHH
Confidence 999999887521000 2345666665532 33322 12344566666667765 888999999999999886
Q ss_pred HHHHHHHcccchHHHHHHHHhc
Q 010652 289 SLDCRYLSGLKEEREKAAKVLK 310 (505)
Q Consensus 289 A~~~r~~s~~~~~r~~~~~~~~ 310 (505)
+ .+.+...++.......++.
T Consensus 303 ~--~~~~~~~~~~~~~~~~~~~ 322 (328)
T PRK14618 303 V--ARVARGGWDPLAGLRSLMG 322 (328)
T ss_pred H--HHHHhCCCCHHHHHHHHhc
Confidence 4 4555555565565555543
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=212.91 Aligned_cols=282 Identities=12% Similarity=0.067 Sum_probs=191.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC---C----CCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG---Q----LPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g---~----~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+|+|||+|.||..+|.+|+++|++|++|||++++++.+.+.+.... . .++..+.+++++++. +|+||+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEEe
Confidence 68999999999999999999999999999999999888776531100 0 025567788887776 9999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCC-ChhhHHHHHHHHHHc-----CCeEEcCCCCCChhhhhcCC-cccCCCCH
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQK-----GLLYLGMGVSGGEEGARHGP-SLMPGGSF 152 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~t~~~~~~l~~~-----gi~~v~~pvsgg~~~a~~G~-~i~~gg~~ 152 (505)
||+ ..++++++++.+.+.++++||+++|+ .+...++..+.+.+. ...++..|..+.+..+..+. .++.|++.
T Consensus 79 v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 79 VPS-QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred CCH-HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 999 58999999999998899999999844 443444445555443 33455566554443333334 56677899
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEeCC-----------------CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCC
Q 010652 153 EAYNNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGL 215 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l 215 (505)
+.++++.++|+..+. .+.+..+ .|.+..+|+.+|.+....++.++|++.++++.| +
T Consensus 158 ~~~~~~~~~l~~~~~------~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~ 230 (325)
T PRK00094 158 ELAERVQELFHSPYF------RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG-A 230 (325)
T ss_pred HHHHHHHHHhCCCCE------EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-C
Confidence 999999999998873 3333222 378888999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhcc-CCcchhhHhhhh--hhcccccccC-----CchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhH
Q 010652 216 SNAELAEIFDEWNK-GELESFLVEITA--DIFKVKDEYG-----EGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 216 ~~~~i~~~~~~~~~-g~~~s~l~~~~~--~~l~~~~~~~-----~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
+++.+.++...-+. ....|+..+.+. ..+.....+. .+ .+....+|++ .+.+.|.++|+|+|+..
T Consensus 231 d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~P~~~ 303 (325)
T PRK00094 231 NPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEMPITE 303 (325)
T ss_pred ChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCCCHHH
Confidence 99998776321000 011122221111 1111111000 00 1122334443 68889999999999988
Q ss_pred HHHHHHHHcccchHHHHHHHH
Q 010652 288 ASLDCRYLSGLKEEREKAAKV 308 (505)
Q Consensus 288 ~A~~~r~~s~~~~~r~~~~~~ 308 (505)
++ . +.+...++.+..+..+
T Consensus 304 ~~-~-~~~~~~~~~~~~~~~~ 322 (325)
T PRK00094 304 AV-Y-AVLYEGKDPREAVEDL 322 (325)
T ss_pred HH-H-HHHcCCCCHHHHHHHH
Confidence 64 3 4455555555554443
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=214.44 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=163.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----------cCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----------EGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~-----------~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+.+.... ....++..+.+++++++. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 489999999999999987775 99999999999999888752100 000134555567777776 999
Q ss_pred EEEecCCC----------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-
Q 010652 76 VIILVKAG----------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP- 144 (505)
Q Consensus 76 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~- 144 (505)
||+|||++ ..++++++++.+ +.+|++||+.||++|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888887 68999999999999999999998887766555 345555553
Q ss_pred --------cccCCCCHHHHHHHHHHHHH--hhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCC
Q 010652 145 --------SLMPGGSFEAYNNIRDILQK--VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 145 --------~i~~gg~~e~~~~v~~ll~~--iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.++.|++++..+++.++|.. ++. ...+++++.++|+++|++.|.+.+..+++++|+..+|++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G- 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQ-----NIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG- 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcC-----CCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 57889988888999998854 441 23347899999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 010652 215 LSNAELAEIF 224 (505)
Q Consensus 215 l~~~~i~~~~ 224 (505)
+|.+++.+++
T Consensus 223 iD~~eV~~a~ 232 (388)
T PRK15057 223 LNTRQIIEGV 232 (388)
T ss_pred cCHHHHHHHh
Confidence 9999999887
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=201.10 Aligned_cols=250 Identities=11% Similarity=0.082 Sum_probs=184.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccC------CCCeeeeCCHHHHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREG------QLPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~-----------~~~~~g------~~~i~~~~s~~e~v~~ 69 (505)
++|+|||+|.||.+||.+|+++|++|++||+++++.+...+ .+...+ ..++..+.++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 58999999999999999999999999999999987765432 111000 0024677888888776
Q ss_pred cCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccC
Q 010652 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMP 148 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~ 148 (505)
+|+|++++|+..+++..+ ..+.+.. ++++++.+||+ .....++.+.+...+..+.++|+++.... ....++
T Consensus 83 ---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lveiv 154 (308)
T PRK06129 83 ---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI---PVVEVV 154 (308)
T ss_pred ---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC---ceEEEe
Confidence 999999999976665554 5555544 55666665555 44566777777767778888999753211 123355
Q ss_pred ---CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 149 ---GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 149 ---gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
+++++++++++++++.+| +.++++|+.+.|+. + |.+ .+++++|++.++++.| +|++++++++
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG------~~~v~v~~~~~G~i---~-nrl---~~a~~~EA~~l~~~g~-~~~~~id~~~- 219 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAG------QSPVRLRREIDGFV---L-NRL---QGALLREAFRLVADGV-ASVDDIDAVI- 219 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEecCCCccHH---H-HHH---HHHHHHHHHHHHHcCC-CCHHHHHHHH-
Confidence 489999999999999999 88999998899973 3 443 4478899999999988 9999999997
Q ss_pred HhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHH
Q 010652 226 EWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 226 ~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~ 290 (505)
..+.+.+|.+ ..+.... |.++++|....+.++.. +..+.+.+.+.|.|++..-+
T Consensus 220 --~~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~ 273 (308)
T PRK06129 220 --RDGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELV 273 (308)
T ss_pred --HhccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHH
Confidence 4555566555 3343332 44667788888888764 77788888999999887543
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-23 Score=202.79 Aligned_cols=118 Identities=14% Similarity=0.290 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhHh
Q 010652 328 KRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFA 407 (505)
Q Consensus 328 ~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~~ 407 (505)
||||||||||||||+||.++|+|++|+.+.+..+ .++.+|++.||.| .++|+||+++.+++++++..++.|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997643222 4677778889988 699999999999999876556789999999
Q ss_pred HHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 408 REMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 408 ~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
...++++| +|++++|++.|+|+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999999 78888877743
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-22 Score=200.60 Aligned_cols=261 Identities=15% Similarity=0.170 Sum_probs=185.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.|+|+|||+|.||.+||.+|+++||+|++|||++. .++++++++ +|+||+++|+ .+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~-~~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSM-KG 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECCh-HH
Confidence 46899999999999999999999999999999852 256677776 9999999999 48
Q ss_pred HHHHHHHHhhc-cCCCCEEEeCCC-CChhhHHHHHHHHHHcCCeEEcCCCC--CChhhhh---cC--C-cccCCCCHHHH
Q 010652 86 VDQTIAALSEH-MSPGDCIIDGGN-EWYLNTERRIHEASQKGLLYLGMGVS--GGEEGAR---HG--P-SLMPGGSFEAY 155 (505)
Q Consensus 86 v~~vl~~l~~~-l~~g~iiId~st-~~~~~t~~~~~~l~~~gi~~v~~pvs--gg~~~a~---~G--~-~i~~gg~~e~~ 155 (505)
++.+++++.+. +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. .+ . .+++|++.+.+
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999988774 788999999987 444444444444433 24556663 4443332 22 3 77889999999
Q ss_pred HHHHHHHHHhhcccCCCCcEEEeCC-----------------CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010652 156 NNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 156 ~~v~~ll~~iga~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
++++++|+..+ ..+++.++ .|.+...|+.+|......+++++|+..++++.| ++++
T Consensus 137 ~~v~~ll~~~~------~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~~ 209 (308)
T PRK14619 137 ETVQQIFSSER------FRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQTE 209 (308)
T ss_pred HHHHHHhCCCc------EEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 99999999887 45554443 233455669999999999999999999999999 9988
Q ss_pred HHHHHHHHhccCCcchhhHhhhhhhcccccccCCch------hHHHHHhhhCCCccHH----HHHHHHHHcCCCcchhHH
Q 010652 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE------LVDKILDKTGMKGTGK----WTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 219 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~------~ld~i~~~~~~kgtg~----~~~~~A~~~gvp~p~i~~ 288 (505)
.+.++ .|.+++++.. ..... ++|..+| .++.+.+...++.+|. .+.+.++++|+++|++.+
T Consensus 210 t~~~~-----~g~gd~~~t~---~~~~~-rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~ 280 (308)
T PRK14619 210 TFYGL-----SGLGDLLATC---TSPLS-RNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQ 280 (308)
T ss_pred ccccc-----cchhhhheee---cCCCC-ccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88663 2445544411 11111 2232223 3334444444444443 556789999999999986
Q ss_pred HHHHHHHcccchHHHHHHHHhcc
Q 010652 289 SLDCRYLSGLKEEREKAAKVLKE 311 (505)
Q Consensus 289 A~~~r~~s~~~~~r~~~~~~~~~ 311 (505)
+ .+.+....+.+.....++..
T Consensus 281 v--~~i~~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 281 V--YRLLQGEITPQQALEELMER 301 (308)
T ss_pred H--HHHHcCCCCHHHHHHHHHcC
Confidence 4 46666666777777776643
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-22 Score=196.70 Aligned_cols=121 Identities=11% Similarity=0.202 Sum_probs=107.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCC-CCCcc
Q 010652 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNL-ASLVV 402 (505)
Q Consensus 324 ~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~-~~ll~ 402 (505)
++++|||||||||||||++||.++|.|++||..-+..+ .++++|+.-||+| .+.|||++++.++|+++++. ...|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 45899999999999999999999999999997654333 4556666669999 99999999999999976543 45999
Q ss_pred hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010652 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~ 449 (505)
|.+.+.+.||+++ ||+++.|+++|+|+|.|++|++ |+++++.+|.
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~ 298 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERV 298 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999 9999999999999999999999 8999998884
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=175.53 Aligned_cols=199 Identities=32% Similarity=0.499 Sum_probs=143.5
Q ss_pred HHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcC
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G 143 (505)
+++...|..-|+||---.+ .-++.++.-.....+|--++|++|+--..- .++|..|+ .||++.+-.-
T Consensus 78 ~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~lM----iGG~~~a~~~ 144 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCLM----IGGDEEAVER 144 (300)
T ss_pred HHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceEE----ecCcHHHHHH
Confidence 4455555667888876544 245555554444567888999999853221 23455443 4555443321
Q ss_pred CcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHH
Q 010652 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAE 222 (505)
Q Consensus 144 ~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~ 222 (505)
- +..++.+.+ ..-| ..|+||.|+|||+|||||+|||++||+++|.+.++++.- .+|.+++.+
T Consensus 145 ~-------~pif~~lA~--ge~G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~ 207 (300)
T COG1023 145 L-------EPIFKALAP--GEDG--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAE 207 (300)
T ss_pred H-------HHHHHhhCc--CcCc--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 1 111222211 0334 789999999999999999999999999999999999764 144556655
Q ss_pred HHHHhccCC-cchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchH
Q 010652 223 IFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301 (505)
Q Consensus 223 ~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~ 301 (505)
+ ||.|+ ..|||++.+...+++ + .-++.+.+.+...|+|+||+++|.++|||+|+|+.|+..||.|...+.
T Consensus 208 v---W~hGSVIrSWLldLt~~Af~~-d-----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d~ 278 (300)
T COG1023 208 V---WNHGSVIRSWLLDLTAEAFKK-D-----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDT 278 (300)
T ss_pred H---HhCcchHHHHHHHHHHHHHhh-C-----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchhh
Confidence 5 88865 679999999988875 2 267899999999999999999999999999999999999999966543
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=183.02 Aligned_cols=197 Identities=12% Similarity=0.095 Sum_probs=158.9
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHH-----HHHHHhhcccCCCCeeeeC
Q 010652 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKV-----DETLDRAHREGQLPLTGHY 61 (505)
Q Consensus 7 ~~IgiIGlG~m--------------------G~~lA~~La~~G~~V~v~dr~~~~~-----~~~~~~~~~~g~~~i~~~~ 61 (505)
|||.|+|+|+- |.+||.+|+++||+|++|||++++. +.+.+. ++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 57888888864 8889999999999999999998743 333332 356778
Q ss_pred CHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhH-HHHHHHHH----HcCCeEEc-CCCCC
Q 010652 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEAS----QKGLLYLG-MGVSG 135 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t-~~~~~~l~----~~gi~~v~-~pvsg 135 (505)
++.+++++ +|+||+|+|.+..++++++++.+.++++.+|||+||+.+... +.+.+.+. ..|+++.+ +++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888876 999999999976689999999999999999999999988877 55555554 33665553 45555
Q ss_pred ChhhhhcCCcccCC--------CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHH
Q 010652 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 136 g~~~a~~G~~i~~g--------g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
++.+.. .+|.| ++++.+++++++|+.++ ..+++++ .|.++.+|+++|.+....++.++|++.
T Consensus 151 ae~g~l---~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G------~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~ 220 (342)
T PRK12557 151 TPQHGH---YVIAGKTTNGTELATEEQIEKCVELAESIG------KEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYS 220 (342)
T ss_pred cccchh---eEEeCCCcccccCCCHHHHHHHHHHHHHcC------CEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322 34444 49999999999999999 6787777 599999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH
Q 010652 208 VLKHVGGLSNAELAEIF 224 (505)
Q Consensus 208 l~~~~g~l~~~~i~~~~ 224 (505)
++++.| .+++++.+-+
T Consensus 221 l~~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 221 VGTKII-KAPKEMIEKQ 236 (342)
T ss_pred HHHHhC-CCHHHHHHHH
Confidence 999999 8888876654
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=180.31 Aligned_cols=207 Identities=19% Similarity=0.215 Sum_probs=167.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLS 69 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~---------------~~~~g~~~i~~~~s~~e~v~~ 69 (505)
+.++|||||||++|.++|..++++|++|.++|+++.+++.+... ....| +++.+++++++.+
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~- 84 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE- 84 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc-
Confidence 34789999999999999999999999999999999998776531 11112 4677777777653
Q ss_pred cCCCcEEEEecCCCc---------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--CCeE-EcCCCCCCh
Q 010652 70 IQRPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLY-LGMGVSGGE 137 (505)
Q Consensus 70 l~~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--gi~~-v~~pvsgg~ 137 (505)
||++++|||++- .+.+..+.+.+.|++|++||--||++|++|+++...+.+. |..| .|..+.-.|
T Consensus 85 ---~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 85 ---CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred ---CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 999999999862 4677778999999999999999999999999999988764 4444 233333344
Q ss_pred hhhhcCC---------cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHH
Q 010652 138 EGARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (505)
Q Consensus 138 ~~a~~G~---------~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l 208 (505)
+....|. .++.|-+++..+.+..+++.+- ..+..+.+.-.++++|+..|.++..++++++|...+
T Consensus 162 ERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv------~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIV------EGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHhe------EEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4444442 3444557788888999999998 567788888999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 010652 209 LKHVGGLSNAELAEIF 224 (505)
Q Consensus 209 ~~~~g~l~~~~i~~~~ 224 (505)
+.+.| +|..++.++.
T Consensus 236 ~~~~G-IdvwevIeaA 250 (436)
T COG0677 236 CNAMG-IDVWEVIEAA 250 (436)
T ss_pred HHHhC-CcHHHHHHHh
Confidence 99999 9999988875
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=184.63 Aligned_cols=122 Identities=10% Similarity=0.147 Sum_probs=111.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcch
Q 010652 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 324 ~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
++++|||||||||||||+.||.++|.|++|+.+.+..+ .++++++.-||.| ++.|+|+++++++|+-+++....|+|
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 46899999999999999999999999999998776555 6788888889999 99999999999999976666668999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
.+.+.+.+|+++ +|+++.|+++|+|+|+|.+|++ ++++++.+|..
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999 89998888754
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-18 Score=171.32 Aligned_cols=254 Identities=17% Similarity=0.149 Sum_probs=194.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~---------------~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||.|++|...+..|++.||+|+.+|++++|++.+.+. ....| +++++++.++.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 689999999999999999999999999999999998766532 11111 48899999999987
Q ss_pred CCcEEEEecCCCc---------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhc
Q 010652 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARH 142 (505)
Q Consensus 72 ~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~ 142 (505)
+|++|++||++. .++.+++.+.+.++..++||.-||+.++++++..+.+.+....= +..|...|+..++
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999998874 47888899999998889999999999999999988776542110 4455566777777
Q ss_pred CC---------cccCCCCH-HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 010652 143 GP---------SLMPGGSF-EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV 212 (505)
Q Consensus 143 G~---------~i~~gg~~-e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~ 212 (505)
|. .+++|... ++.+.++++++.+..+ .+.+.+-....++++|+..|++.+.-++.++|...+|++.
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 73 56677754 4577788888776431 3334444568899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHH
Q 010652 213 GGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 213 g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~ 290 (505)
| +|.+++.+.+. ++.. |-...+...-.|++.++-+.++ -.+..|.++|.+.+++.+.+
T Consensus 231 g-~D~~~V~~gIG------lD~R---IG~~fl~aG~GyGGsCfPKD~~----------AL~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 231 G-ADVKQVAEGIG------LDPR---IGNHFLNAGFGYGGSCFPKDTK----------ALIANAEELGYDPNLLEAVV 288 (414)
T ss_pred C-CCHHHHHHHcC------CCch---hhHhhCCCCCCCCCcCCcHhHH----------HHHHHHHhcCCchHHHHHHH
Confidence 9 99999988762 1211 1112233333466666555443 34678999999999988754
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=189.82 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=151.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~---------------~~~g~~~i~~~~s~~e~v~~l 70 (505)
.++|||||+|.||.+||.+|+++|++|++||+++++.+.+.+.. ...+ +++.++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~- 80 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG- 80 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC-
Confidence 46899999999999999999999999999999999876653210 0001 36778899888877
Q ss_pred CCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccC
Q 010652 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMP 148 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~ 148 (505)
+|+|++++|+..++++.+ .++.+.++++ .||++||+.+..+ .+.+.+..++..++++|+... ..++ ..++
T Consensus 81 --aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv 152 (495)
T PRK07531 81 --ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELV 152 (495)
T ss_pred --CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEc
Confidence 999999999987777754 6777766655 5667777776544 666677777888888887632 3446 6677
Q ss_pred CCC---HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHH
Q 010652 149 GGS---FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL-ISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 149 gg~---~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~-i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
+|+ ++++++++++++.+| +.++++++ .++|.+...+++. ++|++.|+++.| ++++++++++
T Consensus 153 ~g~~t~~e~~~~~~~~~~~lG------~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~~ 217 (495)
T PRK07531 153 GGGKTSPETIRRAKEILREIG------MKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDVI 217 (495)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 775 799999999999999 78888874 5555555556666 499999999988 9999999997
Q ss_pred H
Q 010652 225 D 225 (505)
Q Consensus 225 ~ 225 (505)
.
T Consensus 218 ~ 218 (495)
T PRK07531 218 R 218 (495)
T ss_pred h
Confidence 4
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-18 Score=178.79 Aligned_cols=254 Identities=12% Similarity=0.067 Sum_probs=182.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhccc---C---------CCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHRE---G---------QLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~---g---------~~~i~~~~s~~e~v~~l~ 71 (505)
+|+|+|||+|.+|..+|..|+++| ++|+++|+++++++.+.+....- + ..++.+++++++.+..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 368999999999999999999884 78999999999998876432100 0 0036777888877776
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--C--CeEEcCCC
Q 010652 72 RPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--G--LLYLGMGV 133 (505)
Q Consensus 72 ~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--g--i~~v~~pv 133 (505)
+|++|+|||++. .++++++.+.+.+++|++||..||..|.+++++...+.+. | +++.-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999997554 5778889999999999999999999999999998887763 4 33344553
Q ss_pred CCChhhh----hcCCcccCCCC-----HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHH
Q 010652 134 SGGEEGA----RHGPSLMPGGS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (505)
Q Consensus 134 sgg~~~a----~~G~~i~~gg~-----~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~E 204 (505)
.=-+..+ .+-+.+++||. +++.+.++.+++.+.. ..++.+.+..+++++|++.|.+.+..+++++|
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~-----~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NE 232 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVP-----EERIITTNLWSAELSKLAANAFLAQRISSVNA 232 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhc-----CCCEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 12225667873 3357788888888861 13455667799999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhccCC--cchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCC
Q 010652 205 AYDVLKHVGGLSNAELAEIFDEWNKGE--LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVA 282 (505)
Q Consensus 205 a~~l~~~~g~l~~~~i~~~~~~~~~g~--~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp 282 (505)
...+|++.| +|..++.+.+ +... +..| +...-.+++.++- +|.. ..+..|.++|++
T Consensus 233 la~lce~~g-iD~~eV~~~~---~~d~rig~~~--------l~PG~G~GG~Clp----kD~~------~L~~~a~~~g~~ 290 (473)
T PLN02353 233 MSALCEATG-ADVSQVSHAV---GKDSRIGPKF--------LNASVGFGGSCFQ----KDIL------NLVYICECNGLP 290 (473)
T ss_pred HHHHHHHhC-CCHHHHHHHh---CCCCcCCCCC--------CCCCCCCCCcchh----hhHH------HHHHHHHHcCCc
Confidence 999999998 9999998876 2211 1122 2222224444333 3331 445678889988
Q ss_pred --cchhHHH
Q 010652 283 --APTIAAS 289 (505)
Q Consensus 283 --~p~i~~A 289 (505)
.+++.++
T Consensus 291 ~~~~l~~~~ 299 (473)
T PLN02353 291 EVAEYWKQV 299 (473)
T ss_pred hHHHHHHHH
Confidence 6676654
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=173.84 Aligned_cols=193 Identities=13% Similarity=0.150 Sum_probs=146.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~----------~~i~~~~s~~e~v~~ 69 (505)
.+|+|||+|.||.++|.+|+++|++|++||+++++++++.+. +...|. .+++.+.++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 479999999999999999999999999999999988776431 111000 035667888888776
Q ss_pred cCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEE-EeCCCCChhhHHHHHHHHH-HcCCeEEcCCCCCChhhhhcCC-c
Q 010652 70 IQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCI-IDGGNEWYLNTERRIHEAS-QKGLLYLGMGVSGGEEGARHGP-S 145 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~ii-Id~st~~~~~t~~~~~~l~-~~gi~~v~~pvsgg~~~a~~G~-~ 145 (505)
+|+||+|+|++..++.. +.++.+.++++.++ +++||..+....+..+... ..|.||+ .|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 99999999998776654 47788888888866 7888877755443332211 1478888 787664 4 6
Q ss_pred ccCCC---CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 146 LMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 146 i~~gg---~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
.|++| +++++++++++++.++ +.++++++ ..|.. .|.+.+ .+++|++.++++.. .++++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg------~~~v~v~d-~~Gf~----~nRl~~---~~~~ea~~~~~~gv-~~~~~iD~ 215 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMG------KETVVVNE-FPGFV----TSRISA---LVGNEAFYMLQEGV-ATAEDIDK 215 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecC-cccHH----HHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 67777 9999999999999999 78899975 44544 455544 46699999999876 78999998
Q ss_pred HHH
Q 010652 223 IFD 225 (505)
Q Consensus 223 ~~~ 225 (505)
++.
T Consensus 216 ~~~ 218 (288)
T PRK09260 216 AIR 218 (288)
T ss_pred HHH
Confidence 863
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=164.14 Aligned_cols=236 Identities=16% Similarity=0.123 Sum_probs=165.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~----~V~v~-dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||||||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+. ++....++.+++++ +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~-------g~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL-------GVKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc-------CCEEeCChHHHHhc---CCEEEEEEC
Confidence 589999999999999999999998 89999 9999998777654 25667888888876 999999997
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~ 159 (505)
+ ..+++++.++.+.+.++++||+..++.... .+.+.+... +++. +|..+...+..... ....+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~--~l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLA--DLQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHH--HHHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 5 679999999988888899988775554333 223332221 5664 67666554433322 334556899999999
Q ss_pred HHHHHhhcccCCCCcEEEeC---------CCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Q 010652 160 DILQKVAAQVDDGPCVTYIG---------EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKG 230 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G---------~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g 230 (505)
++|+.+| . +++++ ..|+|... .+..++.++|+ +.+.| +++++..+++.. +
T Consensus 146 ~l~~~~G------~-~~~~~e~~~d~~~~~~g~g~a~-------~~~~~~a~~ea---~~~~G-l~~~~a~~~~~~---~ 204 (266)
T PLN02688 146 TLFGAVG------K-IWVVDEKLLDAVTGLSGSGPAY-------IFLAIEALADG---GVAAG-LPRDVALSLAAQ---T 204 (266)
T ss_pred HHHHhCC------C-EEEeCHHHcchhHhhhcCHHHH-------HHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---H
Confidence 9999999 6 77763 35666553 56677888888 67778 999999998743 2
Q ss_pred CcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 231 ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 231 ~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
...++. .+...+ .. .-+.+......-||..-.+....+.|++-.++.+
T Consensus 205 ~~gs~~------l~~~~~-~~---~~~l~~~v~spgG~t~~~l~~l~~~g~~~~~~~a 252 (266)
T PLN02688 205 VLGAAK------MVLETG-KH---PGQLKDMVTSPGGTTIAGVHELEKGGFRAALMNA 252 (266)
T ss_pred HHHHHH------HHHhcC-CC---HHHHHHhCCCCchHHHHHHHHHHHCChHHHHHHH
Confidence 222222 122111 11 2233344445556766667777788888666553
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=169.97 Aligned_cols=262 Identities=19% Similarity=0.167 Sum_probs=164.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC----------CCeeeeCCHHHHHhhcCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ----------LPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~----------~~i~~~~s~~e~v~~l~~ad 74 (505)
|+|+|+|||+|.||..+|..|+++||+|++|||++. .+.+.+.+..... .++....++ +.+. .+|
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D 75 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TAD 75 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCC
Confidence 357999999999999999999999999999999753 3555543321000 012233444 3333 399
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC--C---CCCChhhhh---cCCcc
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM--G---VSGGEEGAR---HGPSL 146 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~--p---vsgg~~~a~---~G~~i 146 (505)
+||++||+. ..+++++.+.+.+.++.+|++++|+. ...+.+.+.+.+. +++++ + +++++..+. .|+ +
T Consensus 76 ~vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~-~~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~-l 150 (341)
T PRK08229 76 LVLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGV-RNADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGA-L 150 (341)
T ss_pred EEEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCC-CcHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCc-e
Confidence 999999996 57888999999999999999998865 3344555555432 23332 2 343333333 333 2
Q ss_pred cCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHH--------------------HHHHHHHH
Q 010652 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD--------------------MQLISEAY 206 (505)
Q Consensus 147 ~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~--------------------~~~i~Ea~ 206 (505)
..+ +.+.++++.++|+..+ ..+.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 151 ~~~-~~~~~~~~~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 151 AIE-ASPALRPFAAAFARAG------LPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred Eec-CCchHHHHHHHHHhcC------CCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 222 2355788999999888 67889999999999999999743333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccC--CcchhhHhhhhhhcccccccCCchhHHHHHhhhCCC-------ccHHHHHHHHH
Q 010652 207 DVLKHVGGLSNAELAEIFDEWNKG--ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMK-------GTGKWTVQQAA 277 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~~~~~~~~g--~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~k-------gtg~~~~~~A~ 277 (505)
.++++.| ++++.+.++...+... .+.+++++.....+...+ +... ..+++|.... =.| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999998 9876543322111000 122333332222111111 1100 1122222100 012 6889999
Q ss_pred HcCCCcchhHHH
Q 010652 278 ELSVAAPTIAAS 289 (505)
Q Consensus 278 ~~gvp~p~i~~A 289 (505)
++|+|+|+...+
T Consensus 298 ~~gv~~P~~~~~ 309 (341)
T PRK08229 298 RLGAPAPVNARL 309 (341)
T ss_pred HcCCCCcHHHHH
Confidence 999999998865
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=165.66 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=149.7
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhcccCC------CCeeeeCCH
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREGQ------LPLTGHYTP 63 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~-----------~~~~~~~g~------~~i~~~~s~ 63 (505)
|+.++ .+|||||+|.||.+||.+++.+||+|++||++++.+++. .+.+..... .+++.++++
T Consensus 1 ~~~~~-~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 79 (286)
T PRK07819 1 MSDAI-QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL 79 (286)
T ss_pred CCCCc-cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH
Confidence 55433 589999999999999999999999999999999987662 222210000 045677888
Q ss_pred HHHHhhcCCCcEEEEecCCCchHHHHH-HHHhhcc-CCCCEEEeCCCCChhhHHHHHHHHHHc--CCeEEc-CCCCCChh
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLG-MGVSGGEE 138 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l-~~g~iiId~st~~~~~t~~~~~~l~~~--gi~~v~-~pvsgg~~ 138 (505)
++ +++ +|+||.|+|++.+++..+ ..+...+ +++.++++.|++.+.+........+++ |.||++ +|+++..+
T Consensus 80 ~~-~~~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvE 155 (286)
T PRK07819 80 GD-FAD---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVE 155 (286)
T ss_pred HH-hCC---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEE
Confidence 54 454 999999999999998877 4555555 789999999888877766655555556 889988 56666553
Q ss_pred hhhcCCcccCCCCHHHHHHHHHHHH-HhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 139 GARHGPSLMPGGSFEAYNNIRDILQ-KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 139 ~a~~G~~i~~gg~~e~~~~v~~ll~-~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
- ....++++++++++.+++. .++ +.++.+++ ..|..+ |.+ ....++|++.++++.. .++
T Consensus 156 l-----v~~~~T~~~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi~----nRi---~~~~~~Ea~~ll~eGv-~~~ 215 (286)
T PRK07819 156 L-----VPTLVTSEATVARAEEFASDVLG------KQVVRAQD-RSGFVV----NAL---LVPYLLSAIRMVESGF-ATA 215 (286)
T ss_pred E-----eCCCCCCHHHHHHHHHHHHHhCC------CCceEecC-CCChHH----HHH---HHHHHHHHHHHHHhCC-CCH
Confidence 1 3346689999999999988 589 77888864 455544 444 4456699999999876 789
Q ss_pred HHHHHHHH
Q 010652 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~~~~ 225 (505)
++++.++.
T Consensus 216 ~dID~~~~ 223 (286)
T PRK07819 216 EDIDKAMV 223 (286)
T ss_pred HHHHHHHH
Confidence 99999873
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=178.39 Aligned_cols=189 Identities=14% Similarity=0.163 Sum_probs=145.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhcccC------CCCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREG------QLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~-----------~~~~~~~g------~~~i~~~~s~~e~v~ 68 (505)
..+|||||+|.||.+||.+|+.+||+|++||++++++++. .+.+.-.. -.+++.+.+++++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~- 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA- 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-
Confidence 4679999999999999999999999999999999988764 22221000 00367888887754
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEE-eCCCCChhhHHHHHHHHH--H--cCCeEEc-CCCCCChhhhh
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHEAS--Q--KGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~t~~~~~~l~--~--~gi~~v~-~pvsgg~~~a~ 141 (505)
+ ||+||.|||++.++++.+ .++...++++.++. ++||..+. +++..+. + .|+||++ +|++.
T Consensus 86 ~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------ 153 (507)
T PRK08268 86 D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------ 153 (507)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe------
Confidence 4 999999999999999887 56767777888884 78877764 3444333 2 3899999 77772
Q ss_pred cCCcccCC---CCHHHHHHHHHHHHHhhcccCCCCcEEEeCC-CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 142 HGPSLMPG---GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 142 ~G~~i~~g---g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
...+++ +++++++++.++++.++ +.++++|+ +| .+.|.+.. ..++|++.++++.+ .++
T Consensus 154 --LvEvv~g~~Ts~~~~~~~~~l~~~lg------k~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~~~ 215 (507)
T PRK08268 154 --LVEVVSGLATDPAVADALYALARAWG------KTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-ADP 215 (507)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcC------CceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-CCH
Confidence 234454 59999999999999999 88999986 34 35666654 47799999999988 999
Q ss_pred HHHHHHHH
Q 010652 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~~~~ 225 (505)
+++++++.
T Consensus 216 ~~iD~al~ 223 (507)
T PRK08268 216 ATIDAILR 223 (507)
T ss_pred HHHHHHHH
Confidence 99999974
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=165.28 Aligned_cols=185 Identities=14% Similarity=0.201 Sum_probs=132.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G----~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.|+|+|||+|.||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++....++.++++. +|+||+||
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVilav 73 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLAM 73 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEEe
Confidence 368999999999999999999998 78999999864 556665431 24567788888776 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeC-CCCChhhHHHHHHHHHHcCCeEEcCCCCCC---hhhhh-cCCcccCCCC---H
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLYLGMGVSGG---EEGAR-HGPSLMPGGS---F 152 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~t~~~~~~l~~~gi~~v~~pvsgg---~~~a~-~G~~i~~gg~---~ 152 (505)
|+. .+.++++++.+.+.++++||++ ++..+.+.++ .+ ..+ +||+++ ...+. .|.+++++++ +
T Consensus 74 ~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~~~ 143 (279)
T PRK07679 74 KPK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKD-----VPIIRAMPNTSAAILKSATAISPSKHATA 143 (279)
T ss_pred CHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCC-----CeEEEECCCHHHHHhcccEEEeeCCCCCH
Confidence 985 6888889998888889999997 5555443433 22 222 333333 23444 3347776665 6
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEE------E--eCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 153 EAYNNIRDILQKVAAQVDDGPCVT------Y--IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~v~------~--~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
+.++.++++|+.+| .++. + ++..|+|... .+..+..+.|+ +.+.| ++.++..+++
T Consensus 144 ~~~~~v~~l~~~~G------~~~~v~e~~~~~~~a~~Gsgpa~-------~~~~~eal~e~---~~~~G-l~~~~a~~~~ 206 (279)
T PRK07679 144 EHIQTAKALFETIG------LVSVVEEEDMHAVTALSGSGPAY-------IYYVVEAMEKA---AKKIG-LKEDVAKSLI 206 (279)
T ss_pred HHHHHHHHHHHhCC------cEEEeCHHHhhhHHHhhcCHHHH-------HHHHHHHHHHH---HHHcC-CCHHHHHHHH
Confidence 78899999999999 5444 4 5666666652 33344444444 77888 9999999987
Q ss_pred HH
Q 010652 225 DE 226 (505)
Q Consensus 225 ~~ 226 (505)
..
T Consensus 207 ~~ 208 (279)
T PRK07679 207 LQ 208 (279)
T ss_pred HH
Confidence 53
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=175.33 Aligned_cols=191 Identities=16% Similarity=0.156 Sum_probs=141.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~~----------~i~~~~s~~e~v~ 68 (505)
..+|||||+|.||..||.+|+++||+|++||++++++++..+. ....|.. +++.+++++++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~- 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA- 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC-
Confidence 3589999999999999999999999999999999987654211 0111100 467788887654
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHH----HcCCeEEc-CCCCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLG-MGVSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~----~~gi~~v~-~pvsgg~~~a~~ 142 (505)
+ +|+||.|||++.++++.+ .++.+.++++.+|. ++|+....+ ++.+.+. ..|.||++ +|++.
T Consensus 84 ~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~Ila-snTStl~i~-~iA~~~~~p~r~~G~HFf~Papv~~------- 151 (503)
T TIGR02279 84 D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIA-SNTSSLSIT-AIAAGLARPERVAGLHFFNPAPVMA------- 151 (503)
T ss_pred C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE-ECCCCCCHH-HHHHhcCcccceEEEeccCccccCc-------
Confidence 4 999999999998998876 55666666655544 333333333 3444443 34899999 67773
Q ss_pred CCcccCCC---CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 143 GPSLMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 143 G~~i~~gg---~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
...+++| ++++++.+.++++.++ +.++++|+ ..|. +.|.+. ...++|++.++++.+ .++++
T Consensus 152 -LvEvv~g~~Ts~e~~~~~~~l~~~lg------k~pv~v~d-~pGf----i~Nrl~---~~~~~EA~~l~e~g~-a~~~~ 215 (503)
T TIGR02279 152 -LVEVVSGLATAAEVAEQLYETALAWG------KQPVHCHS-TPGF----IVNRVA---RPYYAEALRALEEQV-AAPAV 215 (503)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcC------CeeeEeCC-CCCc----HHHHHH---HHHHHHHHHHHHcCC-CCHHH
Confidence 2456777 9999999999999999 88999986 2233 556555 357899999999988 99999
Q ss_pred HHHHHH
Q 010652 220 LAEIFD 225 (505)
Q Consensus 220 i~~~~~ 225 (505)
++++++
T Consensus 216 ID~al~ 221 (503)
T TIGR02279 216 LDAALR 221 (503)
T ss_pred HHHHHH
Confidence 999985
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=164.92 Aligned_cols=177 Identities=16% Similarity=0.226 Sum_probs=135.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||.++|..|.++|++|++||++++..+++.+.+. +....+..+.+.. +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 47999999999999999999999999999999998888776542 1222233344554 99999999985 67
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCCh-hhhhcCC-cccC----------CCCHH
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGE-EGARHGP-SLMP----------GGSFE 153 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~-~~a~~G~-~i~~----------gg~~e 153 (505)
.++++++.+.+.++.+|+|+++........... ....|++ +|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~----~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEK----LHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHH----hhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 788899999999999999999887654433332 2335887 6998876 4444433 2222 36889
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHH
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~ 203 (505)
.++.++++++.+| ..++++++.+....++++.+...+....+++
T Consensus 147 ~~~~v~~l~~~lG------~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~ 190 (279)
T PRK07417 147 ALAIVEELAVSLG------SKIYTADPEEHDRAVALISHLPVMVSAALIQ 190 (279)
T ss_pred HHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHcchHHHHHHHHHH
Confidence 9999999999999 6788999999999999998887665544433
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=158.40 Aligned_cols=288 Identities=17% Similarity=0.176 Sum_probs=198.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-------CeeeeCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~-------~i~~~~s~~e~v~~l~~advIil 78 (505)
+++|+|||.|.||++||..|+++||+|.+|.|+++.++++.....+...+ ++.++++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 36899999999999999999999999999999999998887653322111 57778899999987 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHH-HHHHHc-CCeE---EcCCCCCChhhhhcCC-ccc-CCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRI-HEASQK-GLLY---LGMGVSGGEEGARHGP-SLM-PGGS 151 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~-~~l~~~-gi~~---v~~pvsgg~~~a~~G~-~i~-~gg~ 151 (505)
.||. ..++++++++.+.+.++.+++.++.+.-..+.++. +.+.+. +.+. +..| +-..+-++.-| .+. .+-|
T Consensus 78 avPs-~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGP-s~A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPS-QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGP-SFAKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECCh-HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECc-cHHHHHhcCCCcEEEEecCC
Confidence 9999 58999999998899999999999998776555544 444432 3222 2222 22345555556 444 4557
Q ss_pred HHHHHHHHHHHHHhhccc-----------CC-CCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 152 FEAYNNIRDILQKVAAQV-----------DD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~-----------~~-~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
.+..++++.+|..=.-.+ .| -|+++.++. |...-+.+-.|+-...+...++|+-++....| -.++.
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 788888888885422110 00 044444432 66666778889999999999999999999999 66775
Q ss_pred HHHHHHHhccCCcchhhHhhhhhhcccccc----cCCchhHHHHHhhhCCCccHHHHHH----HHHHcCCCcchhHHHHH
Q 010652 220 LAEIFDEWNKGELESFLVEITADIFKVKDE----YGEGELVDKILDKTGMKGTGKWTVQ----QAAELSVAAPTIAASLD 291 (505)
Q Consensus 220 i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~----~~~~~~ld~i~~~~~~kgtg~~~~~----~A~~~gvp~p~i~~A~~ 291 (505)
+..+ .|.++ |+-++.....++.. ...+..++..+...+|.-+|..++. .|+++|+++|+.++ |
T Consensus 234 ~~gL-----sGlGD--LilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~-V- 304 (329)
T COG0240 234 FMGL-----SGLGD--LILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEA-V- 304 (329)
T ss_pred hccc-----ccccc--eeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHH-H-
Confidence 5432 22222 11111111111111 1233466777778899999988774 67889999999875 4
Q ss_pred HHHHcccchHHHHHHHHh
Q 010652 292 CRYLSGLKEEREKAAKVL 309 (505)
Q Consensus 292 ~r~~s~~~~~r~~~~~~~ 309 (505)
.|.+-..++.+.....++
T Consensus 305 y~vl~~~~~~~~~~~~L~ 322 (329)
T COG0240 305 YRVLYEGLDPKEAIEELM 322 (329)
T ss_pred HHHHhCCCCHHHHHHHHh
Confidence 455555555555555554
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=157.26 Aligned_cols=190 Identities=13% Similarity=0.189 Sum_probs=141.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+|+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. ...+.+++++. . +|+||+|||+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 479999999999999999999996 78999999998887765432 12345677754 3 99999999995
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCC----hhhhh----cCC-cccCC---CC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 151 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg----~~~a~----~G~-~i~~g---g~ 151 (505)
.+.+++.++.+ +.++.+|+|.|++.........+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67788899999 889999999988765544433322 23568886 99875 44332 454 44543 57
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010652 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~ 223 (505)
++.++.++++|+.+| ..++++++.+....++++++.-. ....+++++.. .+ .+.+++.++
T Consensus 146 ~~~~~~v~~l~~~~G------~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLG------MRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhC------CEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hc-CChHHHHhh
Confidence 788999999999999 67999999999999999988854 44445555541 24 566655443
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=158.59 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=141.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------ccc----CC--CCeeeeCCHHHHHhhcCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HRE----GQ--LPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~----g~--~~i~~~~s~~e~v~~l~~ 72 (505)
..+|||||+|.||.+||.+|+.+|++|.+||++++..+.+.+.. ... +. .++..++++++++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~--- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD--- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---
Confidence 35799999999999999999999999999999998765543210 000 00 046777888888876
Q ss_pred CcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCC-CCChhhhhcCCcc
Q 010652 73 PRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGV-SGGEEGARHGPSL 146 (505)
Q Consensus 73 advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pv-sgg~~~a~~G~~i 146 (505)
||+|+.++|...+++..+ .++.+.++++. ||.+||+.. ...++.+.+... |.||+..|- ..-. -+
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLV-------EV 154 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLV-------EV 154 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceE-------EE
Confidence 999999999998888776 77888887776 666666643 444555555432 556665431 1111 24
Q ss_pred cCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 147 MPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 147 ~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
++| .++++++.+..+++.+| +.++.+...-.|+.+ |.+.. .++.|++.++++.. .++++|+.++
T Consensus 155 v~g~~T~~e~~~~~~~f~~~lG------k~pV~v~kd~pGFi~----NRl~~---a~~~EA~~lv~eGv-as~edID~a~ 220 (321)
T PRK07066 155 LGGERTAPEAVDAAMGIYRALG------MRPLHVRKEVPGFIA----DRLLE---ALWREALHLVNEGV-ATTGEIDDAI 220 (321)
T ss_pred eCCCCCCHHHHHHHHHHHHHcC------CEeEecCCCCccHHH----HHHHH---HHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 444 48899999999999999 778888655666654 55544 45699999999987 9999999997
Q ss_pred H
Q 010652 225 D 225 (505)
Q Consensus 225 ~ 225 (505)
+
T Consensus 221 ~ 221 (321)
T PRK07066 221 R 221 (321)
T ss_pred H
Confidence 4
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-16 Score=157.30 Aligned_cols=196 Identities=13% Similarity=0.100 Sum_probs=138.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-----hcc-cCC------CCeeeeCCHHHHHhhcCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----AHR-EGQ------LPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-----~~~-~g~------~~i~~~~s~~e~v~~l~~ 72 (505)
.+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+. +.. ... -++..++++++++++
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--- 79 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG--- 79 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc---
Confidence 35689999999999999999999999999999999988776542 100 000 024566778877766
Q ss_pred CcEEEEecCCCch-HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCCccc
Q 010652 73 PRSVIILVKAGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGPSLM 147 (505)
Q Consensus 73 advIil~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~~i~ 147 (505)
+|+||+|||+..+ ...++.++.+.++++.+|+..+++. . ..++.+.+... ++||.++|..+ ....++
T Consensus 80 aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~-~-~~~l~~~~~~~~~~ig~h~~~p~~~~------~l~~i~ 151 (311)
T PRK06130 80 ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL-P-ITAIAQAVTRPERFVGTHFFTPADVI------PLVEVV 151 (311)
T ss_pred CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC-C-HHHHHhhcCCcccEEEEccCCCCccC------ceEEEe
Confidence 9999999999754 4566778877776666655444433 2 33555555321 34444433221 111344
Q ss_pred CCC--CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 148 PGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 148 ~gg--~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
+|. ++++++.++++++.+| +.++++++...|. +++|.+ ...++|++.++++.+ ++++++++++.
T Consensus 152 ~g~~t~~~~~~~v~~l~~~~G------~~~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~-~~~~~id~~~~ 217 (311)
T PRK06130 152 RGDKTSPQTVATTMALLRSIG------KRPVLVKKDIPGF---IANRIQ----HALAREAISLLEKGV-ASAEDIDEVVK 217 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 443 7899999999999999 7888998766666 555553 467899999999988 99999999873
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-16 Score=155.56 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=137.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCC----------CCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~-------~~g~----------~~i~~~~s~~e~v~ 68 (505)
.++|+|||+|.||.+||.+|+++|++|++||+++++++.+.+... ..|. .+++..+++++ ++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hc
Confidence 468999999999999999999999999999999998776442100 0000 02566677754 44
Q ss_pred hcCCCcEEEEecCCCchHHH-HHHHHhhccCCCCEEE-eCCCCChhhHHHHHHHHHH----cCCeEEc-CCCCCChhhhh
Q 010652 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCII-DGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~-vl~~l~~~l~~g~iiI-d~st~~~~~t~~~~~~l~~----~gi~~v~-~pvsgg~~~a~ 141 (505)
+ +|+||+|+|+..+++. ++.++.+.+.++.+|+ ++|+..+ + ++++.+.. .|+||++ +|++++.+-
T Consensus 83 ~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~vei-- 154 (292)
T PRK07530 83 D---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVEL-- 154 (292)
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEEE--
Confidence 4 9999999999866654 4588888898998887 4444433 2 45554431 2778888 455544320
Q ss_pred cCCcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 010652 142 HGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 142 ~G~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
....++++++++.+.++++.+| +.++++++.+ | +++++. ...+++|++.++.+.- .++++++
T Consensus 155 ---~~g~~t~~~~~~~~~~~~~~~g------k~~v~~~d~p-g---~i~nRl----~~~~~~ea~~~~~~g~-~~~~~iD 216 (292)
T PRK07530 155 ---IRGIATDEATFEAAKEFVTKLG------KTITVAEDFP-A---FIVNRI----LLPMINEAIYTLYEGV-GSVEAID 216 (292)
T ss_pred ---eCCCCCCHHHHHHHHHHHHHcC------CeEEEecCcC-C---hHHHHH----HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 1124689999999999999999 7888887633 3 344333 3455799999999865 6899999
Q ss_pred HHH
Q 010652 222 EIF 224 (505)
Q Consensus 222 ~~~ 224 (505)
.++
T Consensus 217 ~~~ 219 (292)
T PRK07530 217 TAM 219 (292)
T ss_pred HHH
Confidence 886
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-16 Score=155.07 Aligned_cols=192 Identities=12% Similarity=0.183 Sum_probs=136.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhc--------ccCCCCeeeeCCHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAH--------REGQLPLTGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~-----------~~~~~--------~~g~~~i~~~~s~~e~ 66 (505)
+++|||||+|.||.+||.+|+.+|++|++||+++++++.. .+.+. ..+ .+...++. +.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~-~~ 80 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLG--RIRCTTNL-EE 80 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh--ceEeeCCH-HH
Confidence 4579999999999999999999999999999999887542 22110 000 23444455 44
Q ss_pred HhhcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEE-eCCCCChhhHHHHHHH-HHHcCCeEEcCCCCCChhhhhcC
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHE-ASQKGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~t~~~~~~-l~~~gi~~v~~pvsgg~~~a~~G 143 (505)
++. ||+||+|||++.+++..+ .++.+.++++.+|+ ++|+..+.+..+.... ..-.|+||+++|..+.-
T Consensus 81 ~~~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l------ 151 (295)
T PLN02545 81 LRD---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL------ 151 (295)
T ss_pred hCC---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce------
Confidence 555 999999999888877665 67888888888886 6666654433322211 11137788888765321
Q ss_pred CcccC--CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 010652 144 PSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 144 ~~i~~--gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
.-++. ++++++++.++++|+.+| ++++++++ ..|. +.|.+.. ..++|++.++++.. .++++++
T Consensus 152 veiv~g~~t~~e~~~~~~~ll~~lG------~~~~~~~d-~~g~----i~nri~~---~~~~ea~~~~~~gv-~~~~~iD 216 (295)
T PLN02545 152 VEIIRGADTSDEVFDATKALAERFG------KTVVCSQD-YPGF----IVNRILM---PMINEAFYALYTGV-ASKEDID 216 (295)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcC------CeeEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHH
Confidence 12333 468999999999999999 77888876 3343 4455544 45699999999977 8899998
Q ss_pred HHH
Q 010652 222 EIF 224 (505)
Q Consensus 222 ~~~ 224 (505)
.++
T Consensus 217 ~~~ 219 (295)
T PLN02545 217 TGM 219 (295)
T ss_pred HHH
Confidence 875
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=153.93 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=140.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh----------cccCC----------CCeeeeCCHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA----------HREGQ----------LPLTGHYTPRD 65 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~----------~~~g~----------~~i~~~~s~~e 65 (505)
..+|+|||+|.||.++|..|+.+|++|++||+++++++...+.. ...|. .++..+++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 35899999999999999999999999999999999876533210 00000 023445555 3
Q ss_pred HHhhcCCCcEEEEecCCCchH-HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEc-CCCCCChhh
Q 010652 66 FVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLG-MGVSGGEEG 139 (505)
Q Consensus 66 ~v~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~-~pvsgg~~~ 139 (505)
.+++ +|+||+++|+...+ +.++.++.+.++++.+|+..+++. ...++.+.+... |.||++ ++++++.+.
T Consensus 82 ~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv 156 (291)
T PRK06035 82 SLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIEV 156 (291)
T ss_pred HhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEEE
Confidence 4454 99999999997654 455578888888888887555543 444555555432 778887 677776552
Q ss_pred hhcCCcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 140 ARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 140 a~~G~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
..|+ ..++++++.+.++++.+| +.++++++.+.....|+++| +++|++.++++.. .++++
T Consensus 157 -~~g~----~T~~e~~~~~~~~~~~lg------k~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~~ 216 (291)
T PRK06035 157 -VRAA----LTSEETFNTTVELSKKIG------KIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIKD 216 (291)
T ss_pred -eCCC----CCCHHHHHHHHHHHHHcC------CeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHHH
Confidence 2333 138999999999999999 88999987666666666654 4589999998865 78999
Q ss_pred HHHHHH
Q 010652 220 LAEIFD 225 (505)
Q Consensus 220 i~~~~~ 225 (505)
|+.++.
T Consensus 217 iD~~~~ 222 (291)
T PRK06035 217 IDEMCK 222 (291)
T ss_pred HHHHHh
Confidence 999863
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-15 Score=147.47 Aligned_cols=196 Identities=13% Similarity=0.222 Sum_probs=139.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccC-----------CCCeeeeCCHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREG-----------QLPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g-----------~~~i~~~~s~~e~v 67 (505)
.++|+|||+|.||.++|..|+++|++|++||++++.+++..+.. ...+ ..+++.++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 46899999999999999999999999999999998766654320 0000 00456788888877
Q ss_pred hhcCCCcEEEEecCCCchH-HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC--
Q 010652 68 LSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-- 144 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-- 144 (505)
++ +|+||+|+|+..++ ..+++++.+.++++.+|++.+++.+.. ++.+.+. +.-+|+++.....+ ...+
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~--~~~~~~~-~~~r~vg~Hf~~p~---~~~~lv 153 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS--QFAEATG-RPEKFLALHFANEI---WKNNTA 153 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH--HHHhhcC-CcccEEEEcCCCCC---CcCCeE
Confidence 76 99999999987544 455688888888888886655544332 3333332 22345554332221 1223
Q ss_pred ccc--CCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 145 SLM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~i~--~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
-++ .+.++++++.+..+++.+| +.++.+.+...|..+ |.+ ...+++|++.++++.. .++++|+.
T Consensus 154 evv~~~~t~~~~~~~~~~~~~~~G------k~pv~v~~d~pgfi~----nRi---~~~~~~ea~~l~~~g~-a~~~~iD~ 219 (287)
T PRK08293 154 EIMGHPGTDPEVFDTVVAFAKAIG------MVPIVLKKEQPGYIL----NSL---LVPFLSAALALWAKGV-ADPETIDK 219 (287)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecCCCCCHhH----HHH---HHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 344 3578999999999999999 778888766777665 444 3456699999999876 89999998
Q ss_pred HH
Q 010652 223 IF 224 (505)
Q Consensus 223 ~~ 224 (505)
++
T Consensus 220 a~ 221 (287)
T PRK08293 220 TW 221 (287)
T ss_pred HH
Confidence 86
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-15 Score=147.91 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=136.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHH-----------HHHhhcccC------CCCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-----------TLDRAHREG------QLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~-----------~~~~~~~~g------~~~i~~~~s~~e~v~ 68 (505)
+++|+|||+|.||.++|..|+++|++|++||++++++++ +.+.+.... ..++..+++.++ ++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 358999999999999999999999999999999998753 222221000 003555667654 44
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEc-CCCCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLG-MGVSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~-~pvsgg~~~a~~ 142 (505)
+ ||+||+|+|+...++ +++.++.+.++++.+|+..+++.+ .+ .+.+.+..+ +.||.. +++..+.+
T Consensus 82 ~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~-~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve---- 152 (282)
T PRK05808 82 D---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS-IT-ELAAATKRPDKVIGMHFFNPVPVMKLVE---- 152 (282)
T ss_pred c---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCC-HH-HHHHhhCCCcceEEeeccCCcccCccEE----
Confidence 4 999999999876665 677889998988887754444432 22 555555322 455555 34444332
Q ss_pred CCccc--CCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~--~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
++ .+++++.++.+.++++.+| +.++++++ ..|.. .|.+. ..+++|+..++++.- .++++|
T Consensus 153 ---v~~g~~t~~e~~~~~~~l~~~lG------k~pv~~~d-~~g~i----~~Ri~---~~~~~ea~~~~~~gv-~~~~di 214 (282)
T PRK05808 153 ---IIRGLATSDATHEAVEALAKKIG------KTPVEVKN-APGFV----VNRIL---IPMINEAIFVLAEGV-ATAEDI 214 (282)
T ss_pred ---EeCCCCCCHHHHHHHHHHHHHcC------CeeEEecC-ccChH----HHHHH---HHHHHHHHHHHHhCC-CCHHHH
Confidence 33 4568999999999999999 88899864 55554 45554 455699999999876 789999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.++.
T Consensus 215 D~~~~ 219 (282)
T PRK05808 215 DEGMK 219 (282)
T ss_pred HHHHH
Confidence 98863
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=155.57 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=141.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+++|+||| +|.||.++|+.|.++||+|++||+++. .++++++.+ +|+||+|+|..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~- 153 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH- 153 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH-
Confidence 46899998 999999999999999999999998631 244556665 99999999996
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC-cccCCC-CHHHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPGG-SFEAYNNIRDI 161 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~-~i~~gg-~~e~~~~v~~l 161 (505)
....+++++.+ +++|.+|+|+|++.+.....+.+.+. ..|+ .+|+.|.+.....|. .+++++ ++++++.++++
T Consensus 154 ~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l 229 (374)
T PRK11199 154 LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQ 229 (374)
T ss_pred HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHH
Confidence 56788888988 89999999999987766655554332 2588 579999876666666 455555 67889999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
++.+| ..++++++.+....+++++ .+ ..+..++++..+++ .+ .+.+++.+
T Consensus 230 ~~~lG------~~v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 230 IQVWG------ARLHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHCC------CEEEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 99999 6899999999999999997 44 66777788888876 55 77776543
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-14 Score=141.15 Aligned_cols=194 Identities=17% Similarity=0.166 Sum_probs=132.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~----~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|+|||+|.||..++..|.++|+ +|.+|||++++.+.+.+... ++....+..+++.. +|+||+++|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 25667788888776 9999999987
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCC--CCHHHHHHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNNIR 159 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~g--g~~e~~~~v~ 159 (505)
..+.++++++.+.+.++++||++++.. ....+.+.+..+.++++. +.+..+..|. .++.| .+++.++.++
T Consensus 73 -~~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 -LDIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIP----SITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred -HHHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 578999999999998899999999865 344555554433344443 2334556777 44555 4667889999
Q ss_pred HHHHHhhcccCCCCcEEEeCCCCchhhhhhHh--HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH--NGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~--N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
++|+.+| . ++++.+.-.-...-+.+ -++.+..+..+.++. .++.| ++.++..++..
T Consensus 146 ~ll~~~G------~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~ 203 (273)
T PRK07680 146 RLFSNIS------T-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLAS 203 (273)
T ss_pred HHHHcCC------C-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHH
Confidence 9999999 2 44554320000000111 123333334344432 24467 99999888764
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=148.92 Aligned_cols=291 Identities=14% Similarity=0.105 Sum_probs=186.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC----CC----CeeeeCCHHHHHhhcCCCcEE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG----QL----PLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g----~~----~i~~~~s~~e~v~~l~~advI 76 (505)
.+|||+|||+|.||..+|..|+++| +|.+|.|+++.++.+.+.+.+.. .. ++...+++++.++. +|+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlV 81 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVV 81 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEE
Confidence 3579999999999999999999999 78999999999888876432100 01 34567788877766 9999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHH-HHHHHH----cCCeEEcCCCCCChhhhhcCC-cc-cCC
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR-IHEASQ----KGLLYLGMGVSGGEEGARHGP-SL-MPG 149 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~-~~~l~~----~gi~~v~~pvsgg~~~a~~G~-~i-~~g 149 (505)
|++||+ ..++++++++.+.+.++.++|.++++....+.++ .+.+.+ ..+..+..|-.- .+.+..-+ .+ +.+
T Consensus 82 ilavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a-~ev~~g~~t~~via~ 159 (341)
T PRK12439 82 VMGVPS-HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIA-REVAEGYAAAAVLAM 159 (341)
T ss_pred EEEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHH-HHHHcCCCeEEEEEe
Confidence 999998 5799999999999988888999888876542222 222322 111122222110 11122223 23 334
Q ss_pred CCHHHHHHHHHHHHHhhccc---CCC---------CcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 150 GSFEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 150 g~~e~~~~v~~ll~~iga~~---~~~---------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
.+++..+.++.+|+.-+-++ ++- ++++.++ .|...-+++..|.....+...+.|+..+++..| .++
T Consensus 160 ~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G-~~~ 237 (341)
T PRK12439 160 PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVAMG-GNP 237 (341)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 46677788888886544211 000 2222222 233333455566666677789999999999998 787
Q ss_pred HHHHHHHHHhccCCcchhhHhhhhhhccccc----ccCCchhHHHHHhhhCCCccHHHHHH----HHHHcCCCcchhHHH
Q 010652 218 AELAEIFDEWNKGELESFLVEITADIFKVKD----EYGEGELVDKILDKTGMKGTGKWTVQ----QAAELSVAAPTIAAS 289 (505)
Q Consensus 218 ~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~----~~~~~~~ld~i~~~~~~kgtg~~~~~----~A~~~gvp~p~i~~A 289 (505)
+.+... .|.++ |+-+......++. .+..+..++.+.+.++|+-+|..++. .++++++.+|++.+.
T Consensus 238 ~t~~gl-----~G~GD--l~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~ 310 (341)
T PRK12439 238 ETFAGL-----AGMGD--LIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREV 310 (341)
T ss_pred cccccc-----chhhh--hhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 766543 12222 1111111111111 12233567778888888888987774 778899999999863
Q ss_pred HHHHHHcccchHHHHHHHHhccC
Q 010652 290 LDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 290 ~~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
.+.+...++.+..+..++..+
T Consensus 311 --~~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 311 --DAVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred --HHHHhCCCCHHHHHHHHhcCC
Confidence 577787888888888887554
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=153.61 Aligned_cols=194 Identities=19% Similarity=0.199 Sum_probs=144.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+||| +|.||.++|..|.++|++|++|||++++..+..... ++..+.++++.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999988765554432 24556677777776 99999999994 6
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChhhhhcCC-cccC-C--CCHHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMP-G--GSFEAYNNIRD 160 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~~a~~G~-~i~~-g--g~~e~~~~v~~ 160 (505)
+.++++++.+.+.++.+|+|++++.......+.+.+. .+..|+++ |+.|.......|. .+++ + .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 7889999999999999999999988777766665543 47889986 8887655555666 4443 3 36788999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
+|+.+| ..++++++... -+++.+......+..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G------~~v~~~~~e~H---D~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEG------ARVIVTSPEEH---DRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcC------CEEEECCHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 999999 56778876533 3344343333444444555444 5556 88776543
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=165.92 Aligned_cols=118 Identities=17% Similarity=0.287 Sum_probs=101.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH---HHHHHhCCCcchhhHHHHHHHHHhcCCCCC-CC
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE---LARIWKGGCIIRAVFLDRIKKAYQRNPNLA-SL 400 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~---i~~iW~~GciIrs~lL~~i~~~~~~~~~~~-~l 400 (505)
.+++||+||+||+|+|+.|++++|+|.|+++.. + +|..+ +++.|+.| .++|+++++..++|+++++.. ..
T Consensus 175 ~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~ 248 (470)
T PTZ00142 175 GSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEH 248 (470)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCc
Confidence 479999999999999999999999999998433 3 55555 56669998 589999999999998765432 47
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
++|.+.+...+++++ ||+|++|+++|+|+|+|++||+ +.++++..|..
T Consensus 249 ~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 249 LVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred chhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 888899999999999 9999999999999999999999 67778877754
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=147.76 Aligned_cols=168 Identities=18% Similarity=0.242 Sum_probs=127.3
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|+.++.++|+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.+.. ...+.++++.++. +|+||+
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVii 72 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG-----DRVTTSAAEAVKG---ADLVIL 72 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC-----ceecCCHHHHhcC---CCEEEE
Confidence 676666899999999999999999999995 899999999988776654321 2345677777765 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChh-hhhcC-------C-c---
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARHG-------P-S--- 145 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~-~a~~G-------~-~--- 145 (505)
|+|.. ....+++++.+.+.++.+|+|.++......+...+.+ ..+++|++. |+.|++. +...+ . .
T Consensus 73 avp~~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~ 150 (307)
T PRK07502 73 CVPVG-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILT 150 (307)
T ss_pred CCCHH-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEe
Confidence 99995 5788888898889999999999888765554444433 347789986 8887642 22222 2 2
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCch
Q 010652 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184 (505)
Q Consensus 146 i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g 184 (505)
.+.+++++.++.++++++.+| ..++++++....
T Consensus 151 ~~~~~~~~~~~~~~~l~~~lG------~~~~~~~~~~hD 183 (307)
T PRK07502 151 PPEGTDPAAVARLTAFWRALG------ARVEEMDPEHHD 183 (307)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEcCHHHHh
Confidence 224678899999999999999 677788764433
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-15 Score=151.58 Aligned_cols=290 Identities=10% Similarity=0.014 Sum_probs=188.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHhhcccCCC-------CeeeeCCHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHREGQL-------PLTGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-------~~V~v~dr~~~-----~~~~~~~~~~~~g~~-------~i~~~~s~~e~ 66 (505)
.++|+|||.|.||.+||..|+++| ++|.+|.|+++ .++.+.+.+.+...+ ++..+++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 368999999999999999999998 89999999986 355555443221111 57778898888
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhh--ccCCCCEEEeCCCCChhhHH---HHHHHHHHc-C--CeEEcCCCCCChh
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSE--HMSPGDCIIDGGNEWYLNTE---RRIHEASQK-G--LLYLGMGVSGGEE 138 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~--~l~~g~iiId~st~~~~~t~---~~~~~l~~~-g--i~~v~~pvsgg~~ 138 (505)
+++ +|+|+++||+ ..++++++++.+ .+.++.++|.++.+...++. .+.+.+.+. + +.++..| +-..+
T Consensus 91 v~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGP-s~A~E 165 (365)
T PTZ00345 91 VED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGA-NVAND 165 (365)
T ss_pred Hhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECC-CHHHH
Confidence 887 9999999999 589999999998 78777789988777654432 233333332 2 2222222 22234
Q ss_pred hhhcCC--cccCCCCHHHHHHHHHHHHHhhccc---CCC---------CcEEEeCCCCchhhhhhHhHHHHHHHHHHHHH
Q 010652 139 GARHGP--SLMPGGSFEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (505)
Q Consensus 139 ~a~~G~--~i~~gg~~e~~~~v~~ll~~iga~~---~~~---------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~E 204 (505)
-++.-| ..+.+-+.+..+.++.+|..=.-++ ++- |+++-++. |...-+++-.|.-...+...++|
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHH
Confidence 455555 3445568888888888885322111 000 33333332 44444567789999999999999
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHhccCCcchhh----Hhhh--hhhcccccccCCchhHHHHHhhh--CCCccHHHHH--
Q 010652 205 AYDVLKHVGG-LSNAELAEIFDEWNKGELESFL----VEIT--ADIFKVKDEYGEGELVDKILDKT--GMKGTGKWTV-- 273 (505)
Q Consensus 205 a~~l~~~~g~-l~~~~i~~~~~~~~~g~~~s~l----~~~~--~~~l~~~~~~~~~~~ld~i~~~~--~~kgtg~~~~-- 273 (505)
+..++++.|+ .+++.+... .|.++-.+ .+++ ...+.+. .++..++.+.+.+ +|+-+|..++
T Consensus 245 m~~l~~a~g~~~~~~T~~gl-----aG~GDLi~Tc~sSRN~~~G~~l~~g---~~~~~~~~~~~~~~~~~~vEG~~t~~~ 316 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFES-----CGLADLITTCLGGRNVRCAAEFAKR---NGKKSWEEIEAELLNGQKLQGTVTLKE 316 (365)
T ss_pred HHHHHHHhCCCCCccchhcc-----chHhHhhhcccCCCcHHHHHHHhcc---CCCCCHHHHHHHhhCCcEechHHHHHH
Confidence 9999999972 467766543 12222111 1111 0111110 0113566777766 7889998888
Q ss_pred --HHHHHcCC--CcchhHHHHHHHHHcccchHHHHHHHHhcc
Q 010652 274 --QQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVLKE 311 (505)
Q Consensus 274 --~~A~~~gv--p~p~i~~A~~~r~~s~~~~~r~~~~~~~~~ 311 (505)
+.++++++ ++|++.+ + .|.+...++.......++..
T Consensus 317 v~~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~~~~~l~~r 356 (365)
T PTZ00345 317 VYEVLESHDLKKEFPLFTV-T-YKIAFEGADPSSLIDVLSTN 356 (365)
T ss_pred HHHHHHHcCCCCCCCHHHH-H-HHHHhCCCCHHHHHHHHHcC
Confidence 57889999 8999985 3 56776666666666666543
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-14 Score=143.16 Aligned_cols=255 Identities=18% Similarity=0.200 Sum_probs=163.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CC--CCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ--LPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g~--~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++.... +|+||+++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 77777776543210 00 011123455554444 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccCCC----C
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 151 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~gg----~ 151 (505)
|+. +++++++.+.+.+.++.+||...|+.. ....+.+.+.+. |+.++++...++..-...++ .+..|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 995 689999999998888888988888752 233444444332 34445554433211112233 344442 3
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHH---------------------HHHHHHHHHHHHHHH
Q 010652 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE---------------------YGDMQLISEAYDVLK 210 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~---------------------~~~~~~i~Ea~~l~~ 210 (505)
.+..+.+..+|...+ ..+....+.-...+.|++.|... .....++.|+..+++
T Consensus 155 ~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~ 228 (305)
T PRK12921 155 SERTRAVRDALAGAR------LEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVAR 228 (305)
T ss_pred CHHHHHHHHHHHhCC------CCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 455666777777666 34444445566678888777432 335567899999999
Q ss_pred HhCCCC--HHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 211 HVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g~l~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| ++ .+.+.+.+...... ......++..++..++. ..+|.+... .++.|+++|+|+|....
T Consensus 229 a~G-~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~-----tEid~i~G~---------vv~~a~~~gv~~P~~~~ 292 (305)
T PRK12921 229 AEG-APLRDDVVEEIVKIFAGA-PGDMKTSMLRDMEKGRP-----LEIDHLQGV---------LLRRARAHGIPTPILDT 292 (305)
T ss_pred HcC-CCCChhHHHHHHHHHhcc-CCCCCcHHHHHHHcCCc-----ccHHHHHHH---------HHHHHHHhCCCCcHHHH
Confidence 988 76 33444433321111 11222334456655432 367777654 68899999999999886
Q ss_pred H
Q 010652 289 S 289 (505)
Q Consensus 289 A 289 (505)
.
T Consensus 293 l 293 (305)
T PRK12921 293 V 293 (305)
T ss_pred H
Confidence 4
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-13 Score=134.27 Aligned_cols=234 Identities=12% Similarity=0.087 Sum_probs=151.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~---V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|+|||||+|.||.+|+++|.+.|+. |.+|||++++.+++.+... +...+.+..+++++ +|+||+++|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4799999999999999999999865 5799999999888776431 24567889988887 9999999996
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHH
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~ 163 (505)
..+.++++++ . +.++++||+...+. +...+.+.+......+..+|..... ...|.+.+.+++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 6788888776 2 56788999876553 4445555554433456677763222 233555555553 47899999
Q ss_pred HhhcccCCCCcEEEeCCCCchhhhhhHhHH-----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHh
Q 010652 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNG-----IEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 164 ~iga~~~~~~~v~~~G~~G~g~~vK~v~N~-----i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~ 238 (505)
.+| .++. ++++ |...+. .-...+.++.++..++.+.| +++++..+++.+ ++.
T Consensus 142 ~lG------~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~---------~~~ 198 (258)
T PRK06476 142 ALG------TAVE-CDSE------EEYDLLAAASALMATYFGILETATGWLEEQG-LKRQKARAYLAP---------LFA 198 (258)
T ss_pred hcC------CcEE-ECCh------HhccceeehhccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH---------HHH
Confidence 999 3333 4432 111111 22223346788888999998 999998888633 222
Q ss_pred hhhhh-cccccccCCchhHHHHHh-hhCCCccHHHHHHHHHHcCCCcchhH
Q 010652 239 ITADI-FKVKDEYGEGELVDKILD-KTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 239 ~~~~~-l~~~~~~~~~~~ld~i~~-~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
-+... +.. .+. ..+.+.| ....-||..-.+..-.+.|+.-.++.
T Consensus 199 G~~~l~~~~-~~~----~~~~l~~~v~spgGtT~~gl~~le~~~~~~~~~~ 244 (258)
T PRK06476 199 SLAQDAVRS-TKT----DFSALSREFSTKGGLNEQVLNDFSRQGGYAALTD 244 (258)
T ss_pred HHHHHHHhc-CCC----CHHHHHHhCCCCCchHHHHHHHHHHCChHHHHHH
Confidence 22333 222 111 2233333 34445666555566666777644443
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=162.17 Aligned_cols=120 Identities=12% Similarity=0.219 Sum_probs=99.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcch
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW-NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w-~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
.+++||+||+||+|+|++|++++|+|.|+++.. +. ..++.++++.|+.| .++|++++....+|+++++....|+|
T Consensus 172 ~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l~ 247 (467)
T TIGR00873 172 DGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---GLSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLVD 247 (467)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccHH
Confidence 478999999999999999999999999998533 32 12445556668997 78999999999999985444468889
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
.+.+...+++++ ||+|++|+++|+|+|+|+++++ +.+.++..|..
T Consensus 248 ~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~ 294 (467)
T TIGR00873 248 KILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEERVA 294 (467)
T ss_pred hhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHH
Confidence 899999999999 9999999999999999999999 45555655543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-13 Score=134.41 Aligned_cols=242 Identities=15% Similarity=0.145 Sum_probs=153.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G---~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
||+|+|||+|.||..++..|.++| ++|.+|||++++.+++.+.. ++....+.++++.. +|+||+|+|+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~~ 72 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVKP 72 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcCH
Confidence 578999999999999999999999 78999999999888776542 24556788887766 9999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-cccCCC--CHHHHHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGG--SFEAYNNI 158 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~~gg--~~e~~~~v 158 (505)
. .++++++.+.+.+ +++||..+++.+.. .+.+.+. .+.+++. +| ..+.....|. .++++. +++.++.+
T Consensus 73 ~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v 144 (267)
T PRK11880 73 Q-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELV 144 (267)
T ss_pred H-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHH
Confidence 4 7999999998877 57888888876533 3333332 3445554 34 2233334444 455554 88999999
Q ss_pred HHHHHHhhcccCCCCcEEEeCCCCchhhhh-hHhHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHhccCCcchhh
Q 010652 159 RDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEIFDEWNKGELESFL 236 (505)
Q Consensus 159 ~~ll~~iga~~~~~~~v~~~G~~G~g~~vK-~v~N~i~~~~~~~i~Ea~~l-~~~~g~l~~~~i~~~~~~~~~g~~~s~l 236 (505)
+.+|+.+| . ++++.++..=+.+- +..++- +....+.|++.- +.+.| +++++..+++.++-.|.
T Consensus 145 ~~l~~~lG------~-~~~~~~e~~~d~~~a~~~~~p--a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~g~----- 209 (267)
T PRK11880 145 ENLLSAFG------K-VVWVDDEKQMDAVTAVSGSGP--AYVFLFIEALADAGVKLG-LPREQARKLAAQTVLGA----- 209 (267)
T ss_pred HHHHHhCC------e-EEEECChHhcchHHHHhcChH--HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH-----
Confidence 99999999 4 55665322112211 111211 122223344433 45567 99999888764432222
Q ss_pred HhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhH
Q 010652 237 VEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
...+...+ .. .-+.+.+....-||-.-.+....+.|++-.++.
T Consensus 210 ----~~~~~~~~-~~---~~~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~ 252 (267)
T PRK11880 210 ----AKLLLESG-EH---PAELRDNVTSPGGTTIAALRVLEEKGLRAAVIE 252 (267)
T ss_pred ----HHHHHhcC-CC---HHHHHHhCCCCcHHHHHHHHHHHHCCHHHHHHH
Confidence 23332211 11 122333334445566566667777888865554
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=146.48 Aligned_cols=282 Identities=13% Similarity=0.055 Sum_probs=176.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCC--------CcEEEEeC-----ChhHHHHHHHhhcccCC-----C--CeeeeCCHHHHH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKG--------FPISVYNR-----TTSKVDETLDRAHREGQ-----L--PLTGHYTPRDFV 67 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G--------~~V~v~dr-----~~~~~~~~~~~~~~~g~-----~--~i~~~~s~~e~v 67 (505)
||+|||.|.||.+||..|+++| ++|.+|.| +++-.+.+.....+... + ++++++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 54544444433221100 0 466778999988
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhh--HHH-HHHHHHHc-C--CeEEcCCCCCChhhhh
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TER-RIHEASQK-G--LLYLGMGVSGGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--t~~-~~~~l~~~-g--i~~v~~pvsgg~~~a~ 141 (505)
+. +|+||++||+ ..++++++++.+.+.++.++|.++.+.... +.. +.+.+.+. + +.++..|-. ..+-++
T Consensus 81 ~~---ADiIIlAVPs-~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~-A~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPH-QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANL-ANEVAK 155 (342)
T ss_pred hc---CCEEEEECCh-HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcch-HHHHHc
Confidence 87 9999999999 589999999999998889999998877654 433 33333321 2 222222221 234445
Q ss_pred cCC-cc-cCCCC----HHHHHHHHHHHHHhhccc---CCC---------CcEEEeCCCCchhhhhhHhHHHHHHHHHHHH
Q 010652 142 HGP-SL-MPGGS----FEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (505)
Q Consensus 142 ~G~-~i-~~gg~----~e~~~~v~~ll~~iga~~---~~~---------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~ 203 (505)
.-| .+ +.+.+ .+..+.++.+|..=.-++ ++- |+++-++. |...-+.+-.|+-...+...+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 555 33 34456 788888888885221110 000 33333322 4444455678998899999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHHhccCCcchhhHhhhhhhcccccccCC-chhHHHHHhh--hCCCccHHHHHH----
Q 010652 204 EAYDVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDEYGE-GELVDKILDK--TGMKGTGKWTVQ---- 274 (505)
Q Consensus 204 Ea~~l~~~~g~l~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~-~~~ld~i~~~--~~~kgtg~~~~~---- 274 (505)
|+..+++..| -+++ .+... .|.++-.+.-..++..+-...+.. +..++.+.+. .+|+.+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~ 308 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHE 308 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHH
Confidence 9999999998 5554 44322 122221110000000000001122 3567777777 788899988885
Q ss_pred HHHHcCCC--cchhHHHHHHHHHcccchHHH
Q 010652 275 QAAELSVA--APTIAASLDCRYLSGLKEERE 303 (505)
Q Consensus 275 ~A~~~gvp--~p~i~~A~~~r~~s~~~~~r~ 303 (505)
.+++.++. +|++.+. .+.+...++.+.
T Consensus 309 l~~~~~i~~~~Pi~~~v--y~il~~~~~~~~ 337 (342)
T TIGR03376 309 LLKNKNKDDEFPLFEAV--YQILYEGLPPKK 337 (342)
T ss_pred HHHHcCCCcCCCHHHHH--HHHHhCCCCHHH
Confidence 57889999 9999863 355544444433
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=136.81 Aligned_cols=190 Identities=10% Similarity=0.098 Sum_probs=133.0
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHH-----HHHHhhcccCCCCeeeeC
Q 010652 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVD-----ETLDRAHREGQLPLTGHY 61 (505)
Q Consensus 7 ~~IgiIGlG~m--------------------G~~lA~~La~~G~~V~v~dr~~~~~~-----~~~~~~~~~g~~~i~~~~ 61 (505)
|||.|+|+|+- |.+||++|+++||+|++|||++++++ .+.+.| ...++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 57888888864 88999999999999999999987653 344433 46788
Q ss_pred CHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHH---HHHcCCeEEc---CCCCC
Q 010652 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE---ASQKGLLYLG---MGVSG 135 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~---l~~~gi~~v~---~pvsg 135 (505)
++.++++. +|+||+|+|++.+++++++++.+.+.+|++|||+||+.|.......+. +..+.+.... +.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999998887665 3334343333 23333
Q ss_pred ChhhhhcCCcccCC--------CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHH
Q 010652 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 136 g~~~a~~G~~i~~g--------g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
.+. ++-.++.| .++|..+++-++.+..+ +..+.+...-.+...-|. ....+...+.+.+=+.
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~------~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~ 220 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTG------KKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYY 220 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHH
Confidence 221 11122222 37888999999999998 566665443333333343 2233334455556666
Q ss_pred HHHHhCCCC
Q 010652 208 VLKHVGGLS 216 (505)
Q Consensus 208 l~~~~g~l~ 216 (505)
...+..|.+
T Consensus 221 ~~t~i~~ap 229 (341)
T TIGR01724 221 VGTQIINAP 229 (341)
T ss_pred HHHHHhcCc
Confidence 665554344
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-15 Score=159.33 Aligned_cols=118 Identities=12% Similarity=0.229 Sum_probs=99.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHH---HHHHHHhCCCcchhhHHHHHHHHHhcCCC-CCCC
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG---ELARIWKGGCIIRAVFLDRIKKAYQRNPN-LASL 400 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~---~i~~iW~~GciIrs~lL~~i~~~~~~~~~-~~~l 400 (505)
.+++||+||+||+|+|++|+.++|+|.|+++.. + +|.. +|++.|+.| .++|+++++...++.+++. ....
T Consensus 164 ~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~ 237 (459)
T PRK09287 164 DGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKP 237 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCc
Confidence 479999999999999999999999999999432 3 5554 456668999 5899999999999987442 3458
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
++|.+.+...+++++ ||++++|+++|+|+|+|++|++ +.+.++..|..
T Consensus 238 ~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~ 287 (459)
T PRK09287 238 LVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVA 287 (459)
T ss_pred chHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHH
Confidence 889999999999999 9999999999999999999999 45556666644
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=140.13 Aligned_cols=275 Identities=12% Similarity=0.098 Sum_probs=156.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----C-C--CCeeeeCCHHHHH-hhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-Q--LPLTGHYTPRDFV-LSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g-~--~~i~~~~s~~e~v-~~l~~advIil 78 (505)
|||+|||+|.||..+|..|+++|++|++|+|+++.++.+.+.+.+. + . .++....++++.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 4799999999999999999999999999999998888776542110 0 0 0344566777765 34 899999
Q ss_pred ecCCCchHHHHHHHHhh-ccCCCCEEEeCCCCChhh-----HHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cc-cCCC
Q 010652 79 LVKAGSPVDQTIAALSE-HMSPGDCIIDGGNEWYLN-----TERRIHEASQKGLLYLGMGVSGGEEGARHGP-SL-MPGG 150 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~-----t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i-~~gg 150 (505)
+||+ ..++++++++.+ .+.++..|+..+++.... .+.+.+.+....+..+..|- ...+.+...+ .+ +.|.
T Consensus 78 avks-~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~-~a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPT-QQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS-FAKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCH-HHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc-HHHHHHcCCCcEEEEecC
Confidence 9999 479999999998 888777777777776432 22222322222222222221 1113334344 33 3444
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH-----------------HHHHHHHHHHHHHHHHHHHhC
Q 010652 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN-----------------GIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 151 ~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N-----------------~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.+..+.+..+|+.-+ ..+....+.-.-.+.|++-| .......+++.|+..++++.|
T Consensus 156 ~~~~~~~l~~~l~~~~------~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G 229 (326)
T PRK14620 156 NETLGSSLISKLSNEN------LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKN 229 (326)
T ss_pred CHHHHHHHHHHHCCCC------eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 5555555555554333 22222222333334444433 334446778899999999987
Q ss_pred CC--CHHHHH------HHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccH----HHHHHHHHHcCC
Q 010652 214 GL--SNAELA------EIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTG----KWTVQQAAELSV 281 (505)
Q Consensus 214 ~l--~~~~i~------~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg----~~~~~~A~~~gv 281 (505)
. +++++. +.+..-......++-+.. .+ ..+..++.+.+...+.-+| ....+.++++|+
T Consensus 230 -~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~---~l------~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 230 -GSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGF---KI------GNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred -CCCCcchhhccchhhhhhheecCCCCCcHHHHH---HH------HCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCC
Confidence 5 677773 332111100111111110 00 0112333333322221222 256789999999
Q ss_pred CcchhHHHHHHHHHcccchHHHH
Q 010652 282 AAPTIAASLDCRYLSGLKEEREK 304 (505)
Q Consensus 282 p~p~i~~A~~~r~~s~~~~~r~~ 304 (505)
++|+... +. +.+...++....
T Consensus 300 ~~P~~~~-l~-~~~~~~~~~~~~ 320 (326)
T PRK14620 300 ELPICES-IY-NLLYENISLEKT 320 (326)
T ss_pred CCCHHHH-HH-HHHhCCCCHHHH
Confidence 9999885 33 444433333333
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=139.78 Aligned_cols=254 Identities=16% Similarity=0.194 Sum_probs=150.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc--cCCC--CeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR--EGQL--PLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~--~g~~--~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|+|||+|.||..+|..|+++|++|++++|++++.+.+.+.+.. .+.. .+....+++++ . .+|+||+++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 579999999999999999999999999999998888777654421 1100 01223445443 3 49999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcC----CeEEcCCCCCChhhhhcCC-cccCCC---CHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG----LLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 154 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~g----i~~v~~pvsgg~~~a~~G~-~i~~gg---~~e~ 154 (505)
. +++++++.+.+.+.++.+||...|+.. ..+.+.+.+.... +.+.++-..+.......+. .+.+|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 5 689999999999988888998888753 2233344343221 1222221221111111222 233332 2233
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH---------------------HHHHHHHHHHHHHHHHHHHhC
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~i~Ea~~l~~~~g 213 (505)
.+.+.++|+..+- .+....+.-...+.|++.| ........++.|+..++++.|
T Consensus 155 ~~~l~~~l~~~~~------~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G 228 (304)
T PRK06522 155 AEALADLLNAAGL------DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEG 228 (304)
T ss_pred HHHHHHHHHhcCC------CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcC
Confidence 5666677776552 2222222333334444333 233445677899999999987
Q ss_pred CCCH--HHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 214 GLSN--AELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 214 ~l~~--~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
++. +.+.+.+......... ...++..++...+. -.+|.+.. +.++.|+++|+|+|....
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 229 -VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred -CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 653 4444433322211111 12334445554322 35566553 578999999999998775
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-12 Score=129.48 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=129.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~----~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.++|||||+|.||.+|+.+|.++|+ +|++|||++++.+.+.+.. ++..+.+..++++. +|+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 4689999999999999999999885 6999999999988776521 24567788888876 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~-~i~~g--g~~e~~~~ 157 (505)
+ ..+.++++++.+.+.++.+||+.-.+.+ ...+.+.+... .+.+ -+|-. +.....|. .+.++ .+++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~~-~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKS--IKSTENEFDRK-LKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCCC-CcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHH
Confidence 7 6899999999998888889999877753 34445555321 2222 24532 23344565 34443 25667788
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCC---------CchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 158 IRDILQKVAAQVDDGPCVTYIGEG---------GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~G~~---------G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
++.+|+.+| . ++.+.+. |+|- ++.+..+..+.++ +.+.| ++.++..++..
T Consensus 147 v~~lf~~~G------~-~~~~~E~~~d~~talsgsgP-------Af~~~~~eal~~a---~v~~G-l~~~~A~~l~~ 205 (272)
T PRK12491 147 VLNIFNIFG------Q-TEVVNEKLMDVVTSISGSSP-------AYVYMFIEAMADA---AVLGG-MPRKQAYKFAA 205 (272)
T ss_pred HHHHHHcCC------C-EEEEcHHHhhhHHHhccCcH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999 3 3455331 3321 2223334444444 44566 99998887763
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=140.75 Aligned_cols=178 Identities=13% Similarity=0.110 Sum_probs=133.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhH-------HHHHHH-------hhcccCC----------CCeeeeCC--HHHHHhhc
Q 010652 17 MGQNLALNVAEKGFPISVYNRTTSK-------VDETLD-------RAHREGQ----------LPLTGHYT--PRDFVLSI 70 (505)
Q Consensus 17 mG~~lA~~La~~G~~V~v~dr~~~~-------~~~~~~-------~~~~~g~----------~~i~~~~s--~~e~v~~l 70 (505)
||..||..++.+|++|.+||++++. +++..+ .....|. .+++.+.+ +.+++++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 111110 0000010 04565544 6676666
Q ss_pred CCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHH----HcCCeEEcCC-------CCCChh
Q 010652 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLGMG-------VSGGEE 138 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~----~~gi~~v~~p-------vsgg~~ 138 (505)
+|+||.|||+..+++..+ .++.+.++++.|+ +||+++....++.+.+. ..|.||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999999998777 6788888888888 55555566667777663 2488999988 55554
Q ss_pred hhhcCCcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010652 139 GARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 139 ~a~~G~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
++++++++++.++++.+| +.++++|+.+ |++ -|. ..+..++|++.++++.+ ++++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lG------k~~v~v~d~~-Gfi----~nr---i~~~~l~EAl~l~e~g~-~~~e 209 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIG------KVPVVCGPSP-GYI----VPR---IQALAMNEAARMVEEGV-ASAE 209 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcC------CcEEEecCCC-Ccc----hHH---HHHHHHHHHHHHHHhCC-CCHH
Confidence 579999999999999999 8899998754 543 233 35677799999999988 9999
Q ss_pred HHHHHHH
Q 010652 219 ELAEIFD 225 (505)
Q Consensus 219 ~i~~~~~ 225 (505)
++++++.
T Consensus 210 ~iD~a~~ 216 (314)
T PRK08269 210 DIDKAIR 216 (314)
T ss_pred HHHHHHH
Confidence 9999873
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-14 Score=131.40 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=99.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~---------------~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+.. ...| ++.++++.++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 6899999999999999999999999999999999987765321 1111 68889999998887
Q ss_pred CCcEEEEecCCC---------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHH-HHcC-----CeEEcCCCC--
Q 010652 72 RPRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA-SQKG-----LLYLGMGVS-- 134 (505)
Q Consensus 72 ~advIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l-~~~g-----i~~v~~pvs-- 134 (505)
+|++|+|||++ ..++++++.+.+.+.++++||..||..|.+|+++...+ ++.+ +++.-+|-.
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999875 24788889999999999999999999999999766544 4332 344555522
Q ss_pred CC-h-hhhhcCCcccCCCCHHHHH-HHHH
Q 010652 135 GG-E-EGARHGPSLMPGGSFEAYN-NIRD 160 (505)
Q Consensus 135 gg-~-~~a~~G~~i~~gg~~e~~~-~v~~ 160 (505)
-| . ...++-+.++.|.+++..+ .+++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 11 1 1222223566666554333 5544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-13 Score=138.72 Aligned_cols=171 Identities=14% Similarity=0.172 Sum_probs=124.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+... .-...++++++++. +|+||+|+|.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3799999999999999999999999999999887654433322110 01234566777766 99999999995 78
Q ss_pred HHHHHHHhh-ccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChh-hh-------hcCC-ccc-C--CCCH
Q 010652 87 DQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-GA-------RHGP-SLM-P--GGSF 152 (505)
Q Consensus 87 ~~vl~~l~~-~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~-~a-------~~G~-~i~-~--gg~~ 152 (505)
.++++++.+ .+.++.+|.|.+++.........+. ...+..|++ .|+.|++. |. ..|. .++ + ++++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999887666555443 345678998 68888642 22 2333 333 3 2578
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHh
Q 010652 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH 191 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~ 191 (505)
+.++.++++++.+| ..++++.+......+-++.
T Consensus 153 ~~~~~v~~l~~~lG------a~~v~~~~~~HD~~~A~vs 185 (359)
T PRK06545 153 DAVAELKDLLSGTG------AKFVVLDAEEHDRAVALVS 185 (359)
T ss_pred HHHHHHHHHHHHcC------CEEEECCHHHHhHHHhHhc
Confidence 99999999999999 6777887755555554443
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=132.92 Aligned_cols=192 Identities=16% Similarity=0.230 Sum_probs=132.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
.++|||||.|.||..+|..++..||+|.++|++++.+++..... ...|.. +++...++.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~--- 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA--- 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH---
Confidence 57899999999999999999998899999999987654433211 011100 3444555553
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--Hc--CCeEEcCC-CCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~--gi~~v~~p-vsgg~~~a~~ 142 (505)
++.||+||.+|+....++.-+ .++-+.++++.|+-..+++.+.+ ++++.+. ++ |.||++.| ++--.
T Consensus 80 -l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV----- 151 (307)
T COG1250 80 -LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV----- 151 (307)
T ss_pred -hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE-----
Confidence 334999999999998887655 67777777777666554444433 3444332 22 67777653 22111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++++..+.+.++ +.+ .+...-.|+++..+ ....+.|++.++.+.. .+++++
T Consensus 152 --EvI~g~~T~~e~~~~~~~~~~~ig------K~~-vv~~D~pGFi~NRi-------l~~~~~eA~~l~~eGv-a~~e~I 214 (307)
T COG1250 152 --EVIRGEKTSDETVERVVEFAKKIG------KTP-VVVKDVPGFIVNRL-------LAALLNEAIRLLEEGV-ATPEEI 214 (307)
T ss_pred --EEecCCCCCHHHHHHHHHHHHHcC------CCC-EeecCCCceehHhH-------HHHHHHHHHHHHHhCC-CCHHHH
Confidence 13344 37899999999999999 555 44445667666444 4566699999999987 999999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.+++
T Consensus 215 D~~~~ 219 (307)
T COG1250 215 DAAMR 219 (307)
T ss_pred HHHHH
Confidence 99874
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=131.84 Aligned_cols=254 Identities=13% Similarity=0.123 Sum_probs=154.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhhcCCCcEEE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~----~g~~---~i~~~~s~~e~v~~l~~advIi 77 (505)
.+|+|+|||+|.||..+|..|+++|++|+++.|++. +.....+.. .++. ......++++ . ..+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-M---PPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-c---CCCCEEE
Confidence 457999999999999999999999999999999863 334433311 0100 0112223332 2 3489999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccC---C
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMP---G 149 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~---g 149 (505)
+|||.. ++.++++.+.+.+.++.+|+...|+.. ..+.+.+.+.+. |+.++++...+...-...|. .+.. .
T Consensus 78 lavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 78 VGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEecCC-ChHhHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999996 578888999999988888999888763 333444444332 33344433322111111222 2222 2
Q ss_pred C-C-----HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH---------------------HHHHHHHHHH
Q 010652 150 G-S-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLI 202 (505)
Q Consensus 150 g-~-----~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~i 202 (505)
| + .+..+.+..+|+..+. .+....+.-..-+.|++.| ........++
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag~------~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~ 229 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAGI------DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALM 229 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCCC------CceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHH
Confidence 2 3 4566677788887773 3333334444445555444 1334456778
Q ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcC
Q 010652 203 SEAYDVLKHVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELS 280 (505)
Q Consensus 203 ~Ea~~l~~~~g~l~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~g 280 (505)
.|++.++++.| ++ .+.+..+++...... ....++..++.+.+. ..+|.+.. +.++.|+++|
T Consensus 230 ~E~~~va~a~G-i~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~G 292 (313)
T PRK06249 230 AEVIQGAAACG-HTLPEGYADHMLAVTERMP--DYRPSMYHDFEEGRP-----LELEAIYA---------NPLAAARAAG 292 (313)
T ss_pred HHHHHHHHhcC-CCCChhHHHHHHHHhhcCC--CCCChHHHHHHCCCc-----ccHHHHhh---------HHHHHHHHhC
Confidence 99999999988 76 223333332222211 122444556655432 47888775 5799999999
Q ss_pred CCcchhHHH
Q 010652 281 VAAPTIAAS 289 (505)
Q Consensus 281 vp~p~i~~A 289 (505)
+|+|.....
T Consensus 293 i~~P~~~~l 301 (313)
T PRK06249 293 CAMPRVEML 301 (313)
T ss_pred CCCcHHHHH
Confidence 999998753
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=125.01 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=116.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|+|||+|.||..+|..|.+.|++|++||+++.. +..... ++..+.+.++++.. .+|+||+|+|.. .
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~~--~aDvVilavp~~-~ 104 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCEE--HPDVVLLCTSIL-S 104 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhhC--CCCEEEEecCHH-H
Confidence 468999999999999999999999999999999642 222222 24556788887631 289999999985 7
Q ss_pred HHHHHHHH-hhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhh--hhcCCcc-c-------CCCCHH
Q 010652 86 VDQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG--ARHGPSL-M-------PGGSFE 153 (505)
Q Consensus 86 v~~vl~~l-~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~--a~~G~~i-~-------~gg~~e 153 (505)
+.++++++ .+.+.++.+|+|.+++.......+.+.+. .+..|++ +|+.|.+.+ ...+..+ . .+.+++
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~ 183 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREA 183 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHH
Confidence 88999888 67788999999999976555555555443 3567887 488877643 2233322 2 133678
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
.++.++.+++.+| ..++.+.+.
T Consensus 184 ~~~~l~~l~~~lG------a~v~~~~~e 205 (304)
T PLN02256 184 RCERFLDIFEEEG------CRMVEMSCE 205 (304)
T ss_pred HHHHHHHHHHHCC------CEEEEeCHH
Confidence 8999999999999 567777654
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-12 Score=126.16 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=116.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeeeCCH-HHHHhhcCCCcEEEEecC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTP-RDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~--~~~~~~~~~~~~g~~~i~~~~s~-~e~v~~l~~advIil~vp 81 (505)
++++|+|+|+|.||.++|+.|.++|+.|.+++++.. ..+...+.+... ....+. .+.+. .+|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d-----~~~~~~~~~~~~---~aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVID-----ELTVAGLAEAAA---EADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCccc-----ccccchhhhhcc---cCCEEEEecc
Confidence 357899999999999999999999999877765554 333333222110 111222 33333 4899999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCCh--hhhhcCC--cccCCC--CHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE--EGARHGP--SLMPGG--SFEA 154 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~--~~a~~G~--~i~~gg--~~e~ 154 (505)
-. ++.++++++.|.+++|.+|+|.+++.....+...+...+.. +|++. |+.|++ .....+. .++++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 95 78999999999999999999999998877777776665545 89885 888873 3333444 344543 5678
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
++++..+|+++|+ .++++.+.
T Consensus 152 ~~~~~~~~~~~ga------~~v~~~~e 172 (279)
T COG0287 152 VEEVKRLWEALGA------RLVEMDAE 172 (279)
T ss_pred HHHHHHHHHHcCC------EEEEcChH
Confidence 9999999999994 56777654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=140.11 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=114.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||. .
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~-~ 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSI-L 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCCh-H
Confidence 4578999999999999999999999999999999653 333322 24556788887652 28999999997 5
Q ss_pred hHHHHHHHHhh-ccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC---c-----ccCCCCHHH
Q 010652 85 PVDQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP---S-----LMPGGSFEA 154 (505)
Q Consensus 85 ~v~~vl~~l~~-~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~---~-----i~~gg~~e~ 154 (505)
.+.++++++.+ .+++|.+|+|++++.. ...+..+.+...+..|+ .+|+.|.+.+ ..|. . .+++++.+.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~SvK~-~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~ 514 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSVKE-FPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRR 514 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCccH-HHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcch
Confidence 78899988876 6788999999999873 33344444444577888 5799988754 2331 1 334555544
Q ss_pred H---HHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 155 Y---NNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 155 ~---~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
. +.+..+++.+| ..++.+.+.
T Consensus 515 ~~~~~~l~~l~~~lG------a~vv~ms~e 538 (667)
T PLN02712 515 VSRCDSFLDIFAREG------CRMVEMSCA 538 (667)
T ss_pred HHHHHHHHHHHHHcC------CEEEEeCHH
Confidence 4 44558888888 567777653
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=139.35 Aligned_cols=191 Identities=14% Similarity=0.225 Sum_probs=135.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~----------~~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|++||++++.+++..+. ....|. .+++++++++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-E 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 3579999999999999999999999999999999876543211 011110 057777777553 4
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCC-CCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~p-vsgg~~~a~~ 142 (505)
+ +|+||.+||....++.-+ .++.+.++++.|+...|++.+.+ ++++.+... |.||+..| ...-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV----- 461 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE-----
Confidence 4 999999999998887554 78888888888776666655433 344444322 55555432 11111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..+++.++ +.++.+. ...|..+ |.+.. ..++|++.+.++ | .++++|
T Consensus 462 --Evv~g~~T~~~~~~~~~~~~~~lg------k~pv~v~-d~pGfv~----nRi~~---~~~~ea~~lv~~-G-a~~e~I 523 (715)
T PRK11730 462 --EVIRGEKTSDETIATVVAYASKMG------KTPIVVN-DCPGFFV----NRVLF---PYFAGFSQLLRD-G-ADFRQI 523 (715)
T ss_pred --EeeCCCCCCHHHHHHHHHHHHHhC------CceEEec-CcCchhH----HHHHH---HHHHHHHHHHHc-C-CCHHHH
Confidence 24444 48899999999999999 7888885 4666654 55543 456899999875 5 899999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.++.
T Consensus 524 D~a~~ 528 (715)
T PRK11730 524 DKVME 528 (715)
T ss_pred HHHHH
Confidence 99874
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-12 Score=140.41 Aligned_cols=193 Identities=15% Similarity=0.205 Sum_probs=136.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~----------~~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|+++|++++.+++..+. ....|. .+++++.+++++ +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-K 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-c
Confidence 3579999999999999999999999999999999876553321 111110 057777787654 4
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCC-CCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~p-vsgg~~~a~~ 142 (505)
+ ||+||.+||....++.-+ .++.+.++++.|+...|++.+.+ +++..+... |.||+..+ ++.-.
T Consensus 414 ~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~Lv----- 483 (737)
T TIGR02441 414 N---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQLL----- 483 (737)
T ss_pred c---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCceE-----
Confidence 3 999999999998887554 78888888888887655554433 444444322 55666532 11111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..+++.++ +.++.+++ ..|.++ |.+. ...++|++.++++ | +++++|
T Consensus 484 --Evv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGFi~----NRi~---~~~~~ea~~lv~e-G-v~~~~I 545 (737)
T TIGR02441 484 --EIITHDGTSKDTLASAVAVGLKQG------KVVIVVKD-GPGFYT----TRCL---GPMLAEVIRLLQE-G-VDPKKL 545 (737)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHCC------CeEEEECC-cCCchH----HHHH---HHHHHHHHHHHHc-C-CCHHHH
Confidence 23443 58899999999999999 78888854 566655 5544 4566999999876 5 899999
Q ss_pred HHHHHHh
Q 010652 221 AEIFDEW 227 (505)
Q Consensus 221 ~~~~~~~ 227 (505)
+.++..+
T Consensus 546 D~a~~~~ 552 (737)
T TIGR02441 546 DKLTTKF 552 (737)
T ss_pred HHHHHHc
Confidence 9986543
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=122.37 Aligned_cols=161 Identities=18% Similarity=0.165 Sum_probs=110.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cCCCCee-eeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQLPLT-GHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~----~g~~~i~-~~~s~~e~v~~l~~advIil~v 80 (505)
|||+||| +|.||..|+..|+++|++|.+++|++++.+.+...... .| .... ...+..+.++. +|+||+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g-~~~~~~~~~~~ea~~~---aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGG-SDIKVTGADNAEAAKR---ADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccC-CCceEEEeChHHHHhc---CCEEEEEC
Confidence 5899997 89999999999999999999999999988776653210 00 0011 22356666666 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhh---------------HHHHHHHHHHcCCeEEcC-C-----CCCChhh
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN---------------TERRIHEASQKGLLYLGM-G-----VSGGEEG 139 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---------------t~~~~~~l~~~gi~~v~~-p-----vsgg~~~ 139 (505)
|.. .+.++++++.+.+. +++|||++|....+ ++.+++.+.. +.+++.+ + +..+ ..
T Consensus 77 p~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~-~~ 152 (219)
T TIGR01915 77 PWD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQD-VD 152 (219)
T ss_pred CHH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcC-CC
Confidence 984 68888888877665 58999999886541 1334444332 1333332 2 2222 11
Q ss_pred hhcCC-cccCCCCHHHHHHHHHHHHHh-hcccCCCCcEEEeCCC
Q 010652 140 ARHGP-SLMPGGSFEAYNNIRDILQKV-AAQVDDGPCVTYIGEG 181 (505)
Q Consensus 140 a~~G~-~i~~gg~~e~~~~v~~ll~~i-ga~~~~~~~v~~~G~~ 181 (505)
...+. .+++|-++++.+.+..+.+.+ | -.++.+|+.
T Consensus 153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G------~~~vd~G~l 190 (219)
T TIGR01915 153 DEVDCDVLVCGDDEEAKEVVAELAGRIDG------LRALDAGPL 190 (219)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHhcCC------CCcccCCch
Confidence 11233 556666788889999999999 8 567788874
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=138.75 Aligned_cols=191 Identities=16% Similarity=0.242 Sum_probs=136.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCC----------CCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~----------~~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|+++|++++.+++..+.. ...|. .+++.+.+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-D 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765433211 11110 056777777553 4
Q ss_pred hcCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--c--CCeEEcCC-CCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--K--GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~--gi~~v~~p-vsgg~~~a~~ 142 (505)
+ +|+||.+||....++.- +.++.+.++++.|+...|++.+.+ +++..+.. + |.||+..| ++.-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv----- 461 (714)
T TIGR02437 392 N---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (714)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE-----
Confidence 4 99999999999888754 488888888888887666655443 44444432 2 56666532 22111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..+++.++ +.++.++ ...|+++ |.+.. ..+.|++.++++ | .++++|
T Consensus 462 --Evv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~-d~pGfi~----NRl~~---~~~~ea~~l~~e-G-~~~~~I 523 (714)
T TIGR02437 462 --EVIRGEKSSDETIATVVAYASKMG------KTPIVVN-DCPGFFV----NRVLF---PYFGGFSKLLRD-G-ADFVRI 523 (714)
T ss_pred --eecCCCCCCHHHHHHHHHHHHHcC------CEEEEeC-CcccchH----HHHHH---HHHHHHHHHHHC-C-CCHHHH
Confidence 24444 47899999999999999 8888886 4666655 55544 455999999875 5 899999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.++.
T Consensus 524 D~a~~ 528 (714)
T TIGR02437 524 DKVME 528 (714)
T ss_pred HHHHH
Confidence 99874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=137.15 Aligned_cols=191 Identities=17% Similarity=0.238 Sum_probs=133.8
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhh-------cccCC----------CCeeeeCCHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRA-------HREGQ----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~----------~~i~~~~s~~e~v 67 (505)
..+|+|||+|.||..+|..++ .+|++|++||++++.+++..... ...|. .+++.+++++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF- 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh-
Confidence 357999999999999999998 58999999999998655432210 00000 157777777543
Q ss_pred hhcCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCC-CCCChhhhh
Q 010652 68 LSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~p-vsgg~~~a~ 141 (505)
++ ||+||.+||....++.- +.++.+.++++.|+...|++.+.+ ++++.+... |.||+..| .+.-.
T Consensus 383 ~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV---- 453 (699)
T TIGR02440 383 KD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV---- 453 (699)
T ss_pred cc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE----
Confidence 44 99999999999888754 478888888887776655554433 444444322 55665533 11111
Q ss_pred cCCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 142 HGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 142 ~G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
-++.| .++++++.+..+++.++ +.++.+. ...|..+ |.+. ...++|++.++++ | +++++
T Consensus 454 ---Evv~g~~T~~~~~~~~~~~~~~~g------k~pv~v~-d~pGfi~----nRl~---~~~~~Ea~~l~~~-G-~~~~d 514 (699)
T TIGR02440 454 ---EVIPHAGTSEQTIATTVALAKKQG------KTPIVVA-DKAGFYV----NRIL---APYMNEAARLLLE-G-EPVEH 514 (699)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEEc-cccchHH----HHHH---HHHHHHHHHHHHC-C-CCHHH
Confidence 24443 58899999999999999 7888885 4566655 4443 4566999999885 5 79999
Q ss_pred HHHHHH
Q 010652 220 LAEIFD 225 (505)
Q Consensus 220 i~~~~~ 225 (505)
|+.++.
T Consensus 515 ID~a~~ 520 (699)
T TIGR02440 515 IDKALV 520 (699)
T ss_pred HHHHHH
Confidence 999874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-11 Score=115.89 Aligned_cols=193 Identities=15% Similarity=0.081 Sum_probs=125.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC---c-EEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF---P-ISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~---~-V~v~dr-~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+||+|||+|.||.+++..|+++|+ + |.+++| ++++.+++.+.. ++..+.+.++++++ +|+|++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiav 74 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAM 74 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEec
Confidence 4689999999999999999998873 3 778887 467777766532 24566788888876 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC-cc--cCCCCHHHHH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SL--MPGGSFEAYN 156 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~-~i--~~gg~~e~~~ 156 (505)
|+. ..+++++++.+.++ +++||+++.+..... +.+.+.. +..++ -+|-.. .....|. .+ -..++++..+
T Consensus 75 p~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~~-~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~ 147 (245)
T PRK07634 75 PPS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLPK-GTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKE 147 (245)
T ss_pred CHH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcCC-CCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHH
Confidence 985 78999999988775 679999888765443 3443332 22222 345222 2333443 22 2346889999
Q ss_pred HHHHHHHHhhcccCCCCcEEEeCCCC--chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 157 NIRDILQKVAAQVDDGPCVTYIGEGG--SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~~G~~G--~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
.++.+|+.+| .++ ++.+.- ..+.+--..-++.+..+..+.++ +.+.| ++.++..+++.
T Consensus 148 ~v~~lf~~~G------~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~ 207 (245)
T PRK07634 148 TLQLILKGIG------TSQ-LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVI 207 (245)
T ss_pred HHHHHHHhCC------CEE-EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 9999999999 333 454321 11111111112333333333443 56777 99999888764
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-12 Score=106.61 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=76.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCC---CcEEEE-eCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEecCC
Q 010652 8 RIGLAGLAVMGQNLALNVAEKG---FPISVY-NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G---~~V~v~-dr~~~~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp~ 82 (505)
||||||.|.||.+|+..|.++| ++|.++ +|++++.+++.++. ++.... +..|+++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~------~~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY------GVQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC------TTEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh------ccccccCChHHhhcc---CCEEEEEECH
Confidence 6999999999999999999999 999954 99999999987764 234455 89999998 9999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
..+.++++++ +...++++|||..+
T Consensus 72 -~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 -QQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp -GGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred -HHHHHHHHHH-hhccCCCEEEEeCC
Confidence 5789999999 77789999999865
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-10 Score=112.34 Aligned_cols=192 Identities=19% Similarity=0.185 Sum_probs=131.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G----~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++|||||.|+||.+|+..|.++| .+|.+.||++++.+.+.+.- ++..+++.+++++. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~------g~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY------GVVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc------CCcccCcHHHHHhh---CCEEEEEeC
Confidence 368999999999999999999999 68999999999988666543 23336777888887 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~~g--g~~e~~~~ 157 (505)
+ ..+.+++.++.+ ..++++||..-.+.+ ...+...+. +..++- +|-. +.....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 8 589999999998 788999998877653 344555554 344443 4532 23334555 44443 37778889
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHH
Q 010652 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIF 224 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~~~ 224 (505)
+..+|+.+| .++++.+.---.+.-+ .+---+.+..+.|++.-+- +.| ++.++..++.
T Consensus 144 v~~l~~~~G-------~v~~v~E~~~da~Tai--sGSgPAyv~~~iEal~~agv~~G-l~~~~A~~l~ 201 (266)
T COG0345 144 VEALLSAVG-------KVVEVEESLMDAVTAL--SGSGPAYVFLFIEALADAGVRLG-LPREEARELA 201 (266)
T ss_pred HHHHHHhcC-------CeEEechHHhhHHHHH--hcCCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 999999999 4566653210000000 1111123344455554444 566 9999887775
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-12 Score=119.34 Aligned_cols=152 Identities=19% Similarity=0.364 Sum_probs=100.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHhhc
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVLSI 70 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~-------~~g~~----------~i~~~~s~~e~v~~l 70 (505)
||+|||+|.||..+|..++.+|++|.+||++++.+++..+... ..|.. ++...+++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 6999999999999999999999999999999987654432110 01110 578889999888 5
Q ss_pred CCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--Hc--CCeEEcCCCCCChhhhhcCC-
Q 010652 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGVSGGEEGARHGP- 144 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~--gi~~v~~pvsgg~~~a~~G~- 144 (505)
+|+||.++|....++.-+ .+|.+.++++.++...|++.+.+ ++...+. ++ |.||+..|- .-+
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~--------~~~l 146 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPH--------LMPL 146 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTT--------T--E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccc--------cCce
Confidence 999999999988877544 78888888888887776665433 3443332 22 566665331 111
Q ss_pred -cccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeC
Q 010652 145 -SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179 (505)
Q Consensus 145 -~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G 179 (505)
-+++| .++++++.+..+++.++ +.++.+.
T Consensus 147 VEvv~~~~T~~~~~~~~~~~~~~~g------k~pv~v~ 178 (180)
T PF02737_consen 147 VEVVPGPKTSPETVDRVRALLRSLG------KTPVVVK 178 (180)
T ss_dssp EEEEE-TTS-HHHHHHHHHHHHHTT-------EEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCC------CEEEEec
Confidence 24443 58899999999999999 7777663
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-10 Score=113.66 Aligned_cols=146 Identities=12% Similarity=0.123 Sum_probs=104.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G----~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... ......+..++++. +|+||+|+|
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilavp 73 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICVP 73 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEecC
Confidence 58999999999999999999998 7899999875 44444443221 13456788888776 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~-~i~~g--g~~e~~~~ 157 (505)
+ ..+.++++++.+.+.++.+||...++.... ++.+.+.. ..++ -+|-. +.....|. .+..+ -+++..+.
T Consensus 74 p-~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~~--~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~~ 146 (277)
T PRK06928 74 P-LAVLPLLKDCAPVLTPDRHVVSIAAGVSLD--DLLEITPG--LQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKSR 146 (277)
T ss_pred H-HHHHHHHHHHHhhcCCCCEEEEECCCCCHH--HHHHHcCC--CCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHHH
Confidence 7 578999999999888888999888876443 45554432 1232 23432 23345566 34443 25677889
Q ss_pred HHHHHHHhhc
Q 010652 158 IRDILQKVAA 167 (505)
Q Consensus 158 v~~ll~~iga 167 (505)
++.+|+.+|.
T Consensus 147 v~~l~~~~G~ 156 (277)
T PRK06928 147 LEETLSHFSH 156 (277)
T ss_pred HHHHHHhCCC
Confidence 9999999993
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=122.93 Aligned_cols=256 Identities=14% Similarity=0.116 Sum_probs=148.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-cc---cCCC-Ceee-eCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-HR---EGQL-PLTG-HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-~~---~g~~-~i~~-~~s~~e~v~~l~~advIil~ 79 (505)
.|||+|+|+|.||.-+|..|++.|++|++++|+.++++.+.+.+ .. .|.. .... ..+.+ .+...|+||++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~----~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETAD----AAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcc----cccccCEEEEE
Confidence 46899999999999999999999999999999988888776542 11 0100 0000 11111 12347999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccCCC-CHH
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG-SFE 153 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~gg-~~e 153 (505)
++.. +++++++.+.+.+.++..|+-.-|+... .+.+.+.+... |+.++++..-+.-.-...|. .+..|. +.+
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP 155 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence 9996 6888999999999999999999888743 23344444322 22233221111000011122 122331 223
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHH------------------HHHHHHHHHHHHHHHHHhCCC
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI------------------EYGDMQLISEAYDVLKHVGGL 215 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i------------------~~~~~~~i~Ea~~l~~~~g~l 215 (505)
..+++.++|...+.+ +.+..+.-...+-|++-|.. .....+++.|++.++++.| +
T Consensus 156 ~~~~l~~~l~~ag~~------~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G-~ 228 (305)
T PRK05708 156 TAPAWLDDLREAGIP------HEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG-Q 228 (305)
T ss_pred chHHHHHHHHhcCCC------CccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC-C
Confidence 345555666654421 11222223333444443321 0134577899999999988 6
Q ss_pred C--HHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 216 S--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 216 ~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+ .+.+.+.+......... ...++..++.+.+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 229 PAAAANLHEEVQRVIQATAA-NYSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CccHHHHHHHHHHHHHhccC-CCcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 5 23333333211111111 12344456655432 36777765 4789999999999988764
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-12 Score=111.48 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=87.0
Q ss_pred CchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhh-cccccccCCchhHHHHH
Q 010652 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI-FKVKDEYGEGELVDKIL 260 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~-l~~~~~~~~~~~ld~i~ 260 (505)
|+|+.+|+++|.+..+.+++++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 6788899999988763 443 6688999999999
Q ss_pred hhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 261 ~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
||+. ++.+.|.+.|+|+|+.+.+ .+.|..
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 104 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQA 104 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHH
Confidence 9996 9999999999999999876 344433
|
... |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=135.93 Aligned_cols=192 Identities=18% Similarity=0.256 Sum_probs=134.1
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~----------~~i~~~~s~~e~v 67 (505)
..+|+|||+|.||..+|..++ .+|++|++||++++.+++..+. ....|. .+++.++++++ +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-F 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-h
Confidence 357999999999999999999 8899999999999865543211 000010 05777777754 3
Q ss_pred hhcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhc
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARH 142 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~ 142 (505)
++ ||+||.+||....++.-+ .++.+.++++.|+...|++.+.+ ++++.+... |.||...|-. ..
T Consensus 388 ~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~------~~ 456 (708)
T PRK11154 388 KH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEK------MP 456 (708)
T ss_pred cc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCcccc------Cc
Confidence 44 999999999998877544 78888888888887666655443 344444322 4555543210 00
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-.-+++| .++++++.+..+++.++ +.++.+. ...|..+ |.+ ...+++|++.++++ | +++++|
T Consensus 457 lVEvv~g~~Ts~~~~~~~~~~~~~~g------k~pv~v~-d~pGfi~----nRl---~~~~~~EA~~lv~e-G-v~~~dI 520 (708)
T PRK11154 457 LVEVIPHAKTSAETIATTVALAKKQG------KTPIVVR-DGAGFYV----NRI---LAPYINEAARLLLE-G-EPIEHI 520 (708)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcC------CceEEEe-ccCcHHH----HHH---HHHHHHHHHHHHHc-C-CCHHHH
Confidence 0124444 58899999999999999 7777785 4666655 444 44556999999987 6 899999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.++.
T Consensus 521 D~a~~ 525 (708)
T PRK11154 521 DAALV 525 (708)
T ss_pred HHHHH
Confidence 99864
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=137.09 Aligned_cols=161 Identities=15% Similarity=0.188 Sum_probs=121.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|.||.+++..|.++| ++|++||+++++.+.+.+.+.. .....+.+++++. +|+||+++|..
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 74 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL 74 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH
Confidence 468999999999999999999999 4799999999987776654321 1134566776665 99999999984
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChh-hh-------hcCC--cccC--CC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-GA-------RHGP--SLMP--GG 150 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~-~a-------~~G~--~i~~--gg 150 (505)
.+.++++.+.+.+.++.+|+|.+++.......+.+.+....++|+. .|++|++. +. ..+. .+.+ ++
T Consensus 75 -~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 75 -AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 7899999999998899999999998876666666665544667765 68887653 11 1222 2233 46
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 151 ~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
+++.++.++++|+.+| ..++++.+.
T Consensus 154 ~~~~~~~~~~l~~~~G------~~~~~~~~~ 178 (735)
T PRK14806 154 DPAALARVDRLWRAVG------ADVLHMDVA 178 (735)
T ss_pred CHHHHHHHHHHHHHcC------CEEEEcCHH
Confidence 7888999999999999 556676553
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=113.72 Aligned_cols=99 Identities=16% Similarity=0.301 Sum_probs=82.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-------CCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-------LPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~-------~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
||+|||.|.||.++|..|+++|++|++|.|+++.++.+.+.+.+... .++..++++++++++ +|+|+++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 69999999999999999999999999999999999988875542110 157788999999987 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|. ...+++++++.++++++.+||.++.+.
T Consensus 78 Ps-~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PS-QAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -G-GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cH-HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99 578999999999999999999998776
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-12 Score=134.19 Aligned_cols=119 Identities=17% Similarity=0.317 Sum_probs=101.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhHHHHHHHHHhcCC-CCCCC
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNP-NLASL 400 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~i---W~~GciIrs~lL~~i~~~~~~~~-~~~~l 400 (505)
.+++|++|++||+|+|+.|++++|+|.+++++. ++|.+++.++ |+.| ..+|++++....++..++ .-+..
T Consensus 181 ~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~-----Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~f 254 (493)
T PLN02350 181 GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVG-----GLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDGY 254 (493)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCCc
Confidence 478999999999999999999999999999642 3898888877 9998 789999999888876553 22356
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChhh
Q 010652 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLPA 451 (505)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~a 451 (505)
++|...++.-+|++| ||++++|.+.|+|+|.|++++. |.++++.+|..+
T Consensus 255 ~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~ 305 (493)
T PLN02350 255 LVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAA 305 (493)
T ss_pred hHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHH
Confidence 777777788889999 9999999999999999999998 788888877543
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=113.93 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=110.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
||+|+|+|.|.||.+||++|++.||+|.+-+|+.++..+........ .+ ...+.+++++. +|+||++||-. .
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~---~i-~~~~~~dA~~~---aDVVvLAVP~~-a 72 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP---LI-TGGSNEDAAAL---ADVVVLAVPFE-A 72 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc---cc-ccCChHHHHhc---CCEEEEeccHH-H
Confidence 47899999999999999999999999999966655433333322211 23 34577777777 99999999995 7
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCCh---------------hhHHHHHHHHHHc----CCeEEcCCCC-CChhhhhcCC-
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWY---------------LNTERRIHEASQK----GLLYLGMGVS-GGEEGARHGP- 144 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~---------------~~t~~~~~~l~~~----gi~~v~~pvs-gg~~~a~~G~- 144 (505)
+..++.++...+. |+||||.+|..+ ..++..++.+... .++-+.+... ...... ...
T Consensus 73 ~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~-~~~~ 150 (211)
T COG2085 73 IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPG-GRRD 150 (211)
T ss_pred HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcC-Ccee
Confidence 8889999988775 999999999621 1122233333221 1222222211 111111 222
Q ss_pred cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchh
Q 010652 145 SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGN 185 (505)
Q Consensus 145 ~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~ 185 (505)
.+++|.|.++.+.+..+.+.+| -..+-+|+...++
T Consensus 151 v~vagDD~~Ak~~v~~L~~~iG------~~~ld~G~L~~a~ 185 (211)
T COG2085 151 VLVAGDDAEAKAVVAELAEDIG------FRPLDAGPLENAR 185 (211)
T ss_pred EEEecCcHHHHHHHHHHHHhcC------cceeecccccccc
Confidence 5667778899999999999998 5677778754444
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=118.16 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=126.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||.++|.+|.+.|++|.+++++.++..+..... ++.. .+++++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~-~s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEV-LTVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCee-CCHHHHHhc---CCEEEEcCCHH-H
Confidence 36899999999999999999999999999988766544433221 2343 388888887 99999999986 4
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhh-----hhcCC-ccc-CCCC--HHH
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG-----ARHGP-SLM-PGGS--FEA 154 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~-----a~~G~-~i~-~gg~--~e~ 154 (505)
...++ +++.+.+++|.+|+.++...... .+.....++..+- +|-..+... ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~----~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF----GQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh----ceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999887665533221 1111223444433 454444311 12344 445 5555 788
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCCC-chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEGG-SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~G-~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
.+.+..++..+|+..-|--.. .+.++- +--|=- +..+..+...++..++.++...| .+|+..
T Consensus 162 ~~~a~~l~~aiG~~~~g~~~t-tf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 162 KDLALAYAKGIGGTRAGVIET-TFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHHcCCCccceeee-eecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 999999999999542110000 111110 111100 12233456678888999999999 999854
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-10 Score=114.73 Aligned_cols=254 Identities=16% Similarity=0.175 Sum_probs=156.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC-CCC----eeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG-QLP----LTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g-~~~----i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||.|+|+|.||+-++..|+++|++|+++.|++. ++++.+.+..-. ..+ .....+..+ .+..+|+||++|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~---~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE---ALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh---hcCCCCEEEEEec
Confidence 6899999999999999999999988999998876 777776543110 001 011111112 2234999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhh--cCC---cccCCCCH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGAR--HGP---SLMPGGSF 152 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~--~G~---~i~~gg~~ 152 (505)
+. +++++++.+.+.+.+.+.|+-.-|+....- ++.+..... |+.+.++--.+...-.. .|. ..+.|+.+
T Consensus 77 a~-q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 77 AY-QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cc-cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 96 799999999999999999998888874333 555544443 22222222111111111 233 23455666
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH---------------------HHHHHHHHHHHHHHHHHHH
Q 010652 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKH 211 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~i~Ea~~l~~~ 211 (505)
+.++.+.++|+..+.+ +.+..+.-...+.|++-| ........++.|...++.+
T Consensus 155 ~~~~~i~~~~~~a~~~------~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~ 228 (307)
T COG1893 155 ELVKALAELFKEAGLE------VELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARA 228 (307)
T ss_pred HHHHHHHHHHHhCCCC------eEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHh
Confidence 7888888888776633 333333334444444443 2344566788999999998
Q ss_pred hCCCC--HHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 212 VGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 212 ~g~l~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
.| +. .+.+.+++....+.. .....++..+..+.+. -.+|.|.. ..++.|+++|+++|+...
T Consensus 229 ~g-~~~~~~~~~~v~~~~~~~~-~~~~sSM~qDl~~gr~-----tEid~i~G---------~vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 229 EG-VELPEEVVERVLAVIRATD-AENYSSMLQDLEKGRP-----TEIDAING---------AVVRLAKKHGLATPVNDT 291 (307)
T ss_pred cc-CCCCHHHHHHHHHHHHhcc-cccCchHHHHHHcCCc-----ccHHHHhh---------HHHHHHHHhCCCCcHHHH
Confidence 87 54 433444433222221 1122333445544322 36777765 468999999999999875
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-09 Score=106.90 Aligned_cols=232 Identities=12% Similarity=0.083 Sum_probs=136.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~----~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|||+|||+|.||.+++..|.++|. +|+++||++++. ......++.++++. +|+||+|+|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~---~D~Vilavkp 67 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------PFVYLQSNEELAKT---CDIIVLAVKP 67 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------CeEEeCChHHHHHh---CCEEEEEeCH
Confidence 689999999999999999999873 499999987541 12345678888776 9999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--cCCeEEcCCCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~gi~~v~~pvsgg~~~a~~G~-~i~~g--g~~e~~~~ 157 (505)
..+++++.++.+.+.++.+|.++++......+ +.+.. +-++++. +-+.....|. .+.++ .+++..+.
T Consensus 68 -~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~---~~~~~~~~vvr~mP----n~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 68 -DLAGKVLLEIKPYLGSKLLISICGGLNLKTLE---EMVGVEAKIVRVMP----NTPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred -HHHHHHHHHHHhhccCCEEEEEeCCccHHHHH---HHcCCCCeEEEECC----CchhHhcceeEEEEeCCCCCHHHHHH
Confidence 57999999999988765566666665533332 22221 1122222 1223334555 34433 35677889
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCCC--chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchh
Q 010652 158 IRDILQKVAAQVDDGPCVTYIGEGG--SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESF 235 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~G~~G--~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~ 235 (505)
++.+|+.+| .++++.+.- ....+--.--++.+..+..+.++ +.+.| ++.++..++...
T Consensus 140 v~~l~~~~G-------~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~G-l~~~~a~~l~~~--------- 199 (260)
T PTZ00431 140 VIDIFSACG-------IIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNG-LNRDVSKNLVLQ--------- 199 (260)
T ss_pred HHHHHHhCC-------cEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---------
Confidence 999999999 344443210 00000001122333444444444 45567 999988877532
Q ss_pred hHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchh
Q 010652 236 LVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTI 286 (505)
Q Consensus 236 l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i 286 (505)
++.-+...+.+.+ ..+ -+...+....-||..-.+..-.+.|+.--++
T Consensus 200 ~~~G~a~ll~~~~-~~~---~~l~~~v~spgG~T~~gl~~le~~g~~~~~~ 246 (260)
T PTZ00431 200 TILGSVHMVKASD-QPV---QQLKDDVCSPGGITIVGLYTLEKHAFKYTVM 246 (260)
T ss_pred HHHHHHHHHHhcC-CCH---HHHHHhCCCCChHHHHHHHHHHHCChHHHHH
Confidence 2222233333211 122 2233333344456655555556677764433
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-11 Score=130.67 Aligned_cols=158 Identities=10% Similarity=0.144 Sum_probs=111.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+|++|||. ..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~-~~ 120 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSI-IS 120 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCH-HH
Confidence 468999999999999999999999999999998554 332222 34567788886532 28999999998 57
Q ss_pred HHHHHHHHh-hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhh--hhcCC-cccC----CCCH---H
Q 010652 86 VDQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG--ARHGP-SLMP----GGSF---E 153 (505)
Q Consensus 86 v~~vl~~l~-~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~--a~~G~-~i~~----gg~~---e 153 (505)
+.++++++. +.+.++.+|+|++++.....+.+...+ ..+..|++ .|+.|.+.. ...+. .++. +.+. +
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~ 199 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVS 199 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHH
Confidence 899998886 678899999999988754444344433 33677887 588877631 11222 2232 2222 3
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
.++.++.+++.+| ..++.+.+.
T Consensus 200 ~~~~l~~l~~~lG------a~v~~ms~e 221 (667)
T PLN02712 200 RCKSFLEVFEREG------CKMVEMSCT 221 (667)
T ss_pred HHHHHHHHHHHcC------CEEEEeCHH
Confidence 4566779999999 456666543
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=119.79 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=109.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++|+|||+ |.||.++|+.|.+. |++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 578999999 99999999999964 899999998511 13467777776 99999999995
Q ss_pred chHHHHHHHHhhc---cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChh-hhhcCC-cc-cCCCCHHHHH
Q 010652 84 SPVDQTIAALSEH---MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARHGP-SL-MPGGSFEAYN 156 (505)
Q Consensus 84 ~~v~~vl~~l~~~---l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~-~a~~G~-~i-~~gg~~e~~~ 156 (505)
.+.++++++.+. ++++.+|+|.+++........ ...+..|++. |+.|.+. +...|. .+ .++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899998875 789999999999875444333 2345679985 8888753 333454 33 4555566678
Q ss_pred HHHHHHHHhhcccCCCCcEEEeCCCC
Q 010652 157 NIRDILQKVAAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~~G~~G 182 (505)
.++.+++.+| ..++.+.+..
T Consensus 138 ~v~~l~~~~G------a~v~~~~aee 157 (370)
T PRK08818 138 WVQSLCSALQ------AECVYATPEH 157 (370)
T ss_pred HHHHHHHHcC------CEEEEcCHHH
Confidence 8999999999 4677776643
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.4e-12 Score=109.22 Aligned_cols=110 Identities=16% Similarity=0.266 Sum_probs=74.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v-~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+||+|||.|++|..|++.|.++||+|.. |+|+++..+++..... -..+.++.|+++. +|++|++||++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd- 79 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD- 79 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC-
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH-
Confidence 47999999999999999999999999875 5899887777665422 1344567777666 99999999996
Q ss_pred hHHHHHHHHhhc--cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 85 PVDQTIAALSEH--MSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 ~v~~vl~~l~~~--l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
++.++.++|... ..+|++|+++|.....+..+ -+.++|...
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~---p~~~~Ga~~ 122 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLA---PARERGAIV 122 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGH---HHHHTT-EE
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhh---hHHHCCCeE
Confidence 899999999987 78999999999987665543 345566543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-10 Score=106.56 Aligned_cols=195 Identities=14% Similarity=0.178 Sum_probs=132.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCC---------C------CeeeeCCH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ---------L------PLTGHYTP 63 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~---------~------~i~~~~s~ 63 (505)
+..|+|||.|.||+.+|..-+..|++|.++|++++.+.+..+.. .+++. + +++.+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 45799999999999999999999999999999998765543211 00000 0 34556667
Q ss_pred HHHHhhcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH----cCCeEEcC-CCCCCh
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGM-GVSGGE 137 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~----~gi~~v~~-pvsgg~ 137 (505)
.+++.+ +|+||.++-....++.-+ ..+-....+..+++. .|++..-+ ++...++. .|.||+.. ||+.-.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~t-NTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILAT-NTSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEee-cccceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 777766 899988887766665444 455554555555544 34433322 33333332 28899885 666555
Q ss_pred hhhhcCCcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 138 EGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 138 ~~a~~G~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
+..+. .-.+++.+..+..+-+++| +..+.+.+ -.|..| |.+ .+-.+.|+.++.+++. .+-
T Consensus 166 EVir~-----~~TS~eTf~~l~~f~k~~g------KttVackD-tpGFIV----NRl---LiPyl~ea~r~yerGd-Ask 225 (298)
T KOG2304|consen 166 EVIRT-----DDTSDETFNALVDFGKAVG------KTTVACKD-TPGFIV----NRL---LIPYLMEAIRMYERGD-ASK 225 (298)
T ss_pred hhhcC-----CCCCHHHHHHHHHHHHHhC------CCceeecC-CCchhh----hHH---HHHHHHHHHHHHHhcC-CcH
Confidence 54333 2347899999999999999 66666644 556554 444 5666799999999987 999
Q ss_pred HHHHHHHH
Q 010652 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~~~~ 225 (505)
++|+..++
T Consensus 226 eDIDtaMk 233 (298)
T KOG2304|consen 226 EDIDTAMK 233 (298)
T ss_pred hhHHHHHh
Confidence 99998874
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-09 Score=111.91 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=95.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|.+|.+|||++...+..... ++....+++|+++. +|+|++++|..+++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 579999999999999999999999999999986432222211 24556789999887 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GA 306 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGY 306 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEE
Confidence 9999 578888999999999999999999999999988655433
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.7e-10 Score=112.48 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=95.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+++|..|...|++|.+||++++..... .....+++++++. +|+|++++|...++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 579999999999999999999999999999998653321 1234688998887 99999999998777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ +++.+.+++|.++|+++.+..-+...+.+.+.+..+.....-|.-.+
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~E 264 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENE 264 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCC
Confidence 7777 67888899999999999999999999999998765554444444333
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-09 Score=109.91 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=96.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|..-|.+|.+||+++...+..... ++....++++++.. +|+|++++|..+.+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999986433322221 23456799999987 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
+.++ .+++..+++|.++|+++.+..-+...+.+.+++..+.....-|.
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~ 318 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVW 318 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCC
Confidence 9998 57888999999999999999999999999998765544333333
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=102.75 Aligned_cols=244 Identities=18% Similarity=0.209 Sum_probs=140.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHH
Q 010652 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQT 89 (505)
Q Consensus 17 mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~----~g~~---~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~v 89 (505)
||..+|..|+++|++|++++|+ ++.+.+.+.+.. .+.. .+...+++++ +..+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 666766654421 0100 0112223343 23489999999996 68999
Q ss_pred HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccCCC---CHHHHHHHHHH
Q 010652 90 IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEAYNNIRDI 161 (505)
Q Consensus 90 l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~gg---~~e~~~~v~~l 161 (505)
++.+.+.+.++.+|+...|+... .+.+.+.+... |+.+.++-..+...-...+. .+..|. +.+..+.+..+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 99999999998999998888632 33444444322 12222222221111111122 333332 22445566666
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHH---------------------HHHHHHHHHHHHHHHHHHhCCCC--HH
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYDVLKHVGGLS--NA 218 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~---------------------i~~~~~~~i~Ea~~l~~~~g~l~--~~ 218 (505)
|+..+- .+....+.-...+.|++-|. .......++.|+..++++.| ++ .+
T Consensus 155 l~~~~~------~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~~ 227 (293)
T TIGR00745 155 LNEAGI------PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPDD 227 (293)
T ss_pred HHhCCC------CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCHH
Confidence 766552 22222223333334443331 33445677899999999987 66 33
Q ss_pred HHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 219 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
.+.+.+.........+ ..++..++...+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 228 ~~~~~~~~~~~~~~~~-~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~l 283 (293)
T TIGR00745 228 EVEELVRAVIRMTAEN-TSSMLQDLLRGRR-----TEIDAING---------AVVRLAEKLGIDAPVNRTL 283 (293)
T ss_pred HHHHHHHHHHhcCCCC-CChHHHHHHcCCc-----chHHHhcc---------HHHHHHHHcCCCCChHHHH
Confidence 3444443322211111 1233345544322 36677664 5789999999999988753
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-09 Score=99.53 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=94.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.||..+|++|.+.|++|+++|+++++++++.+.. +.... +.+++... .+|+++.|...+...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~------g~~~v-~~~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELF------GATVV-APEEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc------CCEEE-cchhhccc--cCCEEEecccccccC
Confidence 6799999999999999999999999999999999888776542 12333 33445442 399998776554333
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCC-CCChhhhhcCCcccCCCCH-HHHHHHHHH
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGV-SGGEEGARHGPSLMPGGSF-EAYNNIRDI 161 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pv-sgg~~~a~~G~~i~~gg~~-e~~~~v~~l 161 (505)
++.+ +.+ +.++|++.+|....+ .+..+.++++|+.|++ ... +||. ..+-..|+++.+ ++.++++++
T Consensus 100 ~~~~----~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~~~~~~~~~~~~ 168 (200)
T cd01075 100 DDTI----PQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGNEARVLAKVEAI 168 (200)
T ss_pred HHHH----HHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCcHHHHHHHHHHH
Confidence 3333 334 368999999987654 6788889999999987 444 5543 222244556553 444444444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-09 Score=109.40 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=95.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.|...|++|.+|||++.... .... +.. ..+++++++. +|+|++++|....+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------~~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL-------GAE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc-------CCE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999875432 1111 122 4589999887 99999999999888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
+.++ ++....+++|.++|++|.+...+...+.+.+.+..+.....-|.-
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~ 268 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFE 268 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCC
Confidence 8888 678888999999999999999999999999987655443333433
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.6e-09 Score=101.77 Aligned_cols=143 Identities=18% Similarity=0.298 Sum_probs=99.1
Q ss_pred HHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccC
Q 010652 21 LALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMS 98 (505)
Q Consensus 21 lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~ 98 (505)
+|+.|.++| ++|++||++++..+...+.+... ....+ .+.+.+ +|+||+|+|.. .+.++++++.+.++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~-----~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID-----EASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS-----EEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee-----eccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 688899999 78999999999888877665432 23333 556665 99999999995 78999999999999
Q ss_pred CCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCCh----h----hhhcCC--cccCCC--CHHHHHHHHHHHHHh
Q 010652 99 PGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE----E----GARHGP--SLMPGG--SFEAYNNIRDILQKV 165 (505)
Q Consensus 99 ~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~----~----~a~~G~--~i~~gg--~~e~~~~v~~ll~~i 165 (505)
+|.+|+|.+++.......+.+.+. .+..|++. |+.|.+ + ....|. .++++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998777766666555 67889985 777762 1 222344 334343 568899999999999
Q ss_pred hcccCCCCcEEEeCC
Q 010652 166 AAQVDDGPCVTYIGE 180 (505)
Q Consensus 166 ga~~~~~~~v~~~G~ 180 (505)
| ..++.+.+
T Consensus 150 G------a~~~~~~~ 158 (258)
T PF02153_consen 150 G------ARVVEMDA 158 (258)
T ss_dssp T-------EEEE--H
T ss_pred C------CEEEEcCH
Confidence 9 45677754
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=102.45 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=96.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~-~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||.++|++|.++|++|.++++. +++.+.+.+.+ +.. .+.+++++. +|+|++++|+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~G-------v~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDG-------FKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCC-------CEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 68999999999999999999999998876554 34445544332 343 467888776 9999999998646
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhh-----hhcCC-ccc-CC--CCHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG-----ARHGP-SLM-PG--GSFEAY 155 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~-----a~~G~-~i~-~g--g~~e~~ 155 (505)
...+++++.+.+.++.+ |..+.+..- ......+. .+...+ -+|-..+... ...|. .++ ++ -+.+..
T Consensus 73 ~~~v~~ei~~~l~~g~i-Vs~aaG~~i--~~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGKT-LGFSHGFNI--HFVQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCcE-EEEeCCccH--hhccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 67677889998887864 444444322 22233332 234333 3565444310 02444 443 33 366788
Q ss_pred HHHHHHHHHhhc
Q 010652 156 NNIRDILQKVAA 167 (505)
Q Consensus 156 ~~v~~ll~~iga 167 (505)
+.+..+++.+|.
T Consensus 149 ~~~~~~~~~iG~ 160 (314)
T TIGR00465 149 AIALAYAKAIGG 160 (314)
T ss_pred HHHHHHHHHcCC
Confidence 899999999993
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=96.26 Aligned_cols=203 Identities=15% Similarity=0.235 Sum_probs=133.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccCCC-------CeeeeCCHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQL-------PLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~-----------~~~~~g~~-------~i~~~~s~~e~v 67 (505)
..||+|+|.|.+|+++|..|+..||+|..||+.++.+....+ .+.-.|++ .+..+++++|++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 468999999999999999999999999999999986543332 22212211 355688999999
Q ss_pred hhcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC--
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-- 144 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-- 144 (505)
+. +=.|-.|+|.+-..+.-+ .++-..+. ..+|+..||+.+..+. ...-+..+.-..+..||-.. ..-|
T Consensus 83 k~---Ai~iQEcvpE~L~lkk~ly~qlD~i~d-~~tIlaSSTSt~mpS~-~s~gL~~k~q~lvaHPvNPP----yfiPLv 153 (313)
T KOG2305|consen 83 KG---AIHIQECVPEDLNLKKQLYKQLDEIAD-PTTILASSTSTFMPSK-FSAGLINKEQCLVAHPVNPP----YFIPLV 153 (313)
T ss_pred hh---hhhHHhhchHhhHHHHHHHHHHHHhcC-CceEEeccccccChHH-HhhhhhhhhheeEecCCCCC----cccchh
Confidence 97 777888999987766555 44444444 4556666666544442 23333333333455554321 1111
Q ss_pred ccc--CCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 145 SLM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~i~--~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
-++ +=.+++++++.+.+++++|. ..+....+--|.. .|.+.|++. +|.++|...++ ++..+++.
T Consensus 154 ElVPaPwTsp~tVdrt~~lM~sigq------~pV~l~rei~Gf~----lnriq~Ail---ne~wrLvasGi-l~v~dvD~ 219 (313)
T KOG2305|consen 154 ELVPAPWTSPDTVDRTRALMRSIGQ------EPVTLKREILGFA----LNRIQYAIL---NETWRLVASGI-LNVNDVDA 219 (313)
T ss_pred eeccCCCCChhHHHHHHHHHHHhCC------CCcccccccccce----eccccHHHH---HHHHHHHHccC-cchhhHHH
Confidence 122 23578899999999999994 2333333333443 466666554 99999999887 99999988
Q ss_pred HHHHhccCCcch
Q 010652 223 IFDEWNKGELES 234 (505)
Q Consensus 223 ~~~~~~~g~~~s 234 (505)
++ +.|-+..
T Consensus 220 Vm---S~GLG~R 228 (313)
T KOG2305|consen 220 VM---SAGLGPR 228 (313)
T ss_pred HH---hcCCCcc
Confidence 87 4454433
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.7e-09 Score=107.08 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=90.1
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||+.+|.+|+ ..|.+|.+||+++.... .. .+....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~-------~~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---AT-------YVDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---Hh-------hccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 68999999999999999994 56889999999875421 11 12345689999887 9999999999877
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
.+.++ .++.+.+++|.++|++|.+...++..+.+.+.+..+...
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga 258 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGA 258 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEE
Confidence 77665 567788999999999999999999999999987655433
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8e-08 Score=94.25 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=149.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHH---------------hhcccCCCCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLD---------------RAHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~---------------~~~~~g~~~i~~~~s~~e~v~ 68 (505)
++||+.||+|++|.+-...++-+. .+|++.|.+..++.+... +-.. .++.++++.+..+.
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crg---knlffstdiekai~ 77 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRG---KNLFFSTDIEKAIK 77 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcC---CceeeecchHHHhh
Confidence 368999999999999988887664 468899999988754432 1111 16788889999888
Q ss_pred hcCCCcEEEEecCCCc--------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--HcCCeEEcCC
Q 010652 69 SIQRPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QKGLLYLGMG 132 (505)
Q Consensus 69 ~l~~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~gi~~v~~p 132 (505)
+ +|+||++|.++. -+++....++......+||+.-||+.....+.+...+. .+|++|-
T Consensus 78 e---adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fq--- 151 (481)
T KOG2666|consen 78 E---ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQ--- 151 (481)
T ss_pred h---cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeE---
Confidence 7 999999996542 24555566777777789999999999999988888875 3466652
Q ss_pred CCCChhhhhcC--------C-cccCCCC--HHHHHHHHH---HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHH
Q 010652 133 VSGGEEGARHG--------P-SLMPGGS--FEAYNNIRD---ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD 198 (505)
Q Consensus 133 vsgg~~~a~~G--------~-~i~~gg~--~e~~~~v~~---ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~ 198 (505)
+...|+...+| | .+++||. +|.++.++. +++..- .... +......+++..|++.|++.+.-
T Consensus 152 ilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwv----p~~~-iittntwsselsklaanaflaqr 226 (481)
T KOG2666|consen 152 ILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWV----PREQ-IITTNTWSSELSKLAANAFLAQR 226 (481)
T ss_pred eccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhC----cccc-eeeccccHHHHHHHHHHHHHHHH
Confidence 22233444444 3 5677884 455555544 444333 1122 33346789999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 199 MQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 199 ~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
+..++-+.++|+..| .+..++..+.
T Consensus 227 issins~salceatg-adv~eva~av 251 (481)
T KOG2666|consen 227 ISSINSMSALCEATG-ADVSEVAYAV 251 (481)
T ss_pred HhhhHHHHHHHHhcC-CCHHHHHHHh
Confidence 999999999999999 9999888775
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-09 Score=106.13 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=93.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. +|+|++++|..+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999998889999999998432 111 0124689999887 99999999999988
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
+.++ .+.+..+++|.++|++|.+...++..+.+.+.+..+.....-|...
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~ 238 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN 238 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence 8888 5678889999999999999999999999999876454433334433
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-09 Score=96.69 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=85.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|+|+|.||..++..|++.| ++|+++||++++.+++.+...... ......+.++++++ +|+||+++|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 368999999999999999999996 789999999998887765532100 00234566666555 999999999975
Q ss_pred h-HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 P-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~-v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
. ++.+... ...++++.+++|+++..+ .+ .+.+.+++.|+.|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~-~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPL-ET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCC-CC-HHHHHHHHCCCceeCC
Confidence 4 2322211 123678999999988754 44 7778888888877753
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=106.75 Aligned_cols=116 Identities=17% Similarity=0.254 Sum_probs=93.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+||+++++...+. ......++++++.. +|+|++++|..+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5899999999999999999999999999999765421110 01123578888887 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|.+..+.....-|.
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCC
Confidence 9988 46788899999999999999999999999998875544333343
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-09 Score=97.38 Aligned_cols=112 Identities=12% Similarity=0.211 Sum_probs=90.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||+..........+ + ...+++|+++. +|+|++++|..+..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhcccccc
Confidence 6899999999999999999999999999999988655333321 2 45799999998 99999999988777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+++..+...
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga 149 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGA 149 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceE
Confidence 7777 677888999999999999998899999998887655433
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=100.84 Aligned_cols=125 Identities=19% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~--G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+.+.+++|||||+|.||..++.+|.+. +++|. +|||++++.+++.+.... ...+.+++++.++ +|+|+
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vv 72 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVV 72 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEE
Confidence 5554457999999999999999999874 78876 889999988777654211 2456889999876 99999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE-EcCCCCCCh
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGE 137 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~-v~~pvsgg~ 137 (505)
+|+|.. ...++.... +..|+.++..+.....+.+++.+.++++|..+ +..+..+|-
T Consensus 73 i~tp~~-~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 73 EAAPAS-VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred ECCCcH-HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 999985 455555444 34666566566655556778888888888765 544544443
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=101.25 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=113.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.++|++|.+.|++|.+||+.....+.+...+ +.. .+++|+++. +|+|++++|++ ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5799999999999999999999999999997644433333222 333 489999987 99999999985 45
Q ss_pred HHHH-HHHhhccCCCCEEEeCC--CCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhh---hcC--C-cccC---CCCHH
Q 010652 87 DQTI-AALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGA---RHG--P-SLMP---GGSFE 153 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~s--t~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a---~~G--~-~i~~---gg~~e 153 (505)
+.++ +++.+.+++|.+++-.- |.++. .....+++..+ -+|=..|.... ..| . ++++ --+..
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~hgfni~~~------~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~ 158 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSHGFNIHFG------QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGT 158 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCcceecC------ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCc
Confidence 7777 57999999999876543 23332 12233455443 34544443211 122 2 2221 12233
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeC--C----CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIG--E----GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G--~----~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
+.+.+......+|+-- .-++... + .=-|+ +..+-.+...++--.+..+.+.| .+|+.
T Consensus 159 a~~~ala~a~~iG~~r---agv~~ttf~~EtetDlfgE-----q~vL~Gg~~~li~~gfe~lveaG-y~pe~ 221 (335)
T PRK13403 159 ALHVALAYAKGVGCTR---AGVIETTFQEETETDLFGE-----QAVLCGGVTALVKAGFETLTEGG-YRPEI 221 (335)
T ss_pred HHHHHHHHHHHcCCCc---eeEEecchHHHHhhhhccc-----chhhHHHHHHHHHHHHHHHHHcC-CCHHH
Confidence 5667777777777421 0111110 0 00000 11233455666677777778887 88874
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-08 Score=107.11 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=92.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|.+|.+||+.... +..... ++...++++++++. +|+|++++|..+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 57999999999999999999999999999986322 112221 23445689999887 99999999999888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gA 251 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAA 251 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEE
Confidence 8888 567778999999999999999999999999988766543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.4e-08 Score=98.94 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH--------HhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL--------DRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~--------~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||||+|.||+.+|+.|...|.+|.+|||+..+..... ...... .....++++++.. +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE----KGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccc----cCcccCHHHHHhh---CCEEEE
Confidence 5899999999999999999999999999999843211110 000000 0134588899887 999999
Q ss_pred ecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
++|.....+.++ ++.+..+++|.++|+++-+..-+...+.+.|.+..+.....-|.-
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~ 290 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAW 290 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCC
Confidence 999988888888 678888999999999999998899999999887655443333433
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5e-08 Score=106.10 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=91.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+||++... +..... ++... +++|+++. +|+|++++|..+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 122222 23444 89999887 99999999999889
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 9888 6788889999999999999999999999999876443
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-08 Score=88.35 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..++..+.| +. ..+.+|+++. +|+|++.+|+.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~- 71 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE- 71 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-
Confidence 35899999999999999999999999999988877 445555443 33 4688999987 99999999994
Q ss_pred hHHHHH-HHHhhccCCCCEEEeCC
Q 010652 85 PVDQTI-AALSEHMSPGDCIIDGG 107 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iiId~s 107 (505)
.-.++. +++.|.|++|++++-..
T Consensus 72 ~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 72 VQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEESS
T ss_pred HHHHHHHHHHHhhCCCCCEEEeCC
Confidence 556676 89999999999887653
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-08 Score=101.31 Aligned_cols=116 Identities=13% Similarity=0.163 Sum_probs=91.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
++|||||+|.||+.+|+.+...|++|.+||+..... .+ .....+++++++. ||+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EG-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----cc-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 579999999999999999999999999999864321 11 1234689999887 999999999865
Q ss_pred --hHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 85 --PVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 85 --~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+...++ ++.+..+++|.++|++|.+..-+...+.+.+.+..+.....-|...+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~E 237 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGE 237 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 366666 56788899999999999999999999999888765443333344433
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-07 Score=92.51 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=109.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|||||.|.||+-+|..|.++||.|...||+. -+.+.+.- +...++.+.++++. .+|+|++|+..- .+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y------g~~~ft~lhdlcer--hpDvvLlctsil-si 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY------GSAKFTLLHDLCER--HPDVVLLCTSIL-SI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh------cccccccHHHHHhc--CCCEEEEEehhh-hH
Confidence 469999999999999999999999999999986 44444432 23456788888875 599999999884 68
Q ss_pred HHHHHHHhhc-cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChhhhhcCC--cccC----CC----CHHH
Q 010652 87 DQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP--SLMP----GG----SFEA 154 (505)
Q Consensus 87 ~~vl~~l~~~-l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~~a~~G~--~i~~----gg----~~e~ 154 (505)
+.++...-+. ++.|++++|..+..........+.+++ .+..+.+ |+.|.......+. .++. .| .+|.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777665 889999999988876666666676654 5666665 5555442333322 2221 23 3678
Q ss_pred HHHHHHHHHHhhc
Q 010652 155 YNNIRDILQKVAA 167 (505)
Q Consensus 155 ~~~v~~ll~~iga 167 (505)
++.+.++|...+.
T Consensus 201 cE~fleIf~cegc 213 (480)
T KOG2380|consen 201 CEFFLEIFACEGC 213 (480)
T ss_pred HHHHHHHHHhcCC
Confidence 8888899988884
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=97.03 Aligned_cols=110 Identities=13% Similarity=0.239 Sum_probs=92.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++||||+|.+|+.+|..+..-|.+|.+||+...+..... . ......+++++++. +|+|.+.+|-.+..
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-~-------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-D-------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-c-------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 5799999999999999999999999999999433321111 1 24556899999998 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 9888 5677889999999999999999999999998875443
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=95.75 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||+.... .. .+ ...+++++++. +|+|++++|-.+..
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999999999999999974321 11 12 24589999887 99999999999888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ ++.+..+++|.++|+++-+..-+...+.+.|++..+. ...-|.-.+
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~E 261 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKE 261 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCC
Confidence 8888 6778889999999999999999999999999876555 433444333
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=99.24 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=94.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+++... .. ......+++++++. +|+|++.+|..+..
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 579999999999999999999999999999874311 11 13445689999987 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+.+..+.....-|.
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf 266 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVF 266 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCC
Confidence 8888 57788899999999999999999999999998775544333333
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-07 Score=93.90 Aligned_cols=118 Identities=15% Similarity=0.228 Sum_probs=95.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +.... +++|++++ +|+|.+.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~-~l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYV-DLDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceec-cHHHHHHh---CCEEEEeCCCChHH
Confidence 6899999999999999999977889999999975 1122221 12334 49999998 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
...+ .+.+..+++|.++|+++-+..-+...+.+.|++..+.-.+.-|.-.
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~ 265 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFEN 265 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCC
Confidence 9998 6778889999999999999999999999999887554444444433
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.1e-07 Score=92.19 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=89.4
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++||||+|.+|+.+|+.+. .-|.+|.+||+...... .... +.. ..+++++++. +|+|++++|-.+.
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 57999999999999999997 77889999998753211 1111 123 3589999987 9999999999988
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888 5788889999999999999999999999999876554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-07 Score=93.48 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=80.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.||..+|..|...|.+|+++||++++.+.+.+.+.. .....++++++.+ +|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChH-Hh
Confidence 579999999999999999999999999999999876665443211 1112344555554 99999999875 11
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
. .+..+.++++.+|||.++..-.+-. +..+++|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 4456678889999999886544322 45567788777554
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5e-07 Score=92.15 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=88.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||.... .. ....+++++++. +|+|++++|-.+..
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~--------~~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------AR--------PDRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cc--------ccccCHHHHHHh---CCEEEECCCCChHH
Confidence 57999999999999999999999999999986321 00 113489999887 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+.++ .+....+++|.++|+++-+..-+...+.+.+.+..+..
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~g 254 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGG 254 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeE
Confidence 8888 67788899999999999999999999999998765543
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-07 Score=90.29 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=82.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|||||||+|.||..++..+.+. +++ +.++|+++++.+++.+.. +...+.++++++.. +|+|++|+|+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~~ 72 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASVN 72 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCChH
Confidence 6899999999999999999876 466 558999999888776532 24567899998755 99999999874
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC---ChhhHHHHHHHHHHcCCe-EEcCCCCCChh
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~t~~~~~~l~~~gi~-~v~~pvsgg~~ 138 (505)
...+.+..++. .|.-++..|.. .....+++.+..++.|.. ++..+..+|-.
T Consensus 73 -~~~~~~~~al~---~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d 127 (265)
T PRK13304 73 -AVEEVVPKSLE---NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLD 127 (265)
T ss_pred -HHHHHHHHHHH---cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHH
Confidence 55555555443 45545555552 334455666666677754 44444444433
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-05 Score=78.70 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=111.3
Q ss_pred CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 29 GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 29 G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++|.+|||++++.+.+.+.. ++....+..++++. +|+||+||++ ..++++++++.+.+.++++||+..+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecC
Confidence 468999999999988876542 24567888888887 9999999995 6899999999887777889999988
Q ss_pred CChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-cccCCC--CHHHHHHHHHHHHHhhcccCCCCcEEEeCCC--C
Q 010652 109 EWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEG--G 182 (505)
Q Consensus 109 ~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~~gg--~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~--G 182 (505)
+.+.. .+.+.+.. +...+- +|-. +.....|. .+.++. +++..+.++.+|+.+| .++++.+. -
T Consensus 79 gi~~~--~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G-------~~~~v~E~~~~ 146 (245)
T TIGR00112 79 GVTLE--KLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVG-------EVVELPEALMD 146 (245)
T ss_pred CCCHH--HHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCC-------CEEEECHHHcc
Confidence 87544 44444432 122332 4532 33344666 444442 5566788999999999 34444331 1
Q ss_pred chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
....+--.-.++.+..+..+.++ +.+.| +++++..++..
T Consensus 147 ~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 147 AVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred hHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 11111112234444455555554 45567 99999888763
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-07 Score=92.39 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=91.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... .. . ....+++++++. +|+|++++|-.+..
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~--------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---R--------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---c--------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 58999999999999999999999999999986421 00 0 113589999987 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
+..+ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.....-|.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 8888 67788899999999999999999999999998765543333343
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=96.44 Aligned_cols=116 Identities=13% Similarity=0.182 Sum_probs=89.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|||||+|.||+.+|+.|..-|.+|.+||+.... ... .....+++++++. ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~------~~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD------RGD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc------ccc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 58999999999999999999999999999975321 110 0124689999987 9999999986553
Q ss_pred ---HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
...++ ++.+..+++|.++|++|-+..-+...+.+.+++..+.....-|.-.+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~E 237 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGE 237 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCC
Confidence 56666 57788899999999999999999999999888764433333344333
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.3e-06 Score=80.91 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=131.7
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHHHH-HHhhcccCCCCeeeeCCHH
Q 010652 6 LSRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVDET-LDRAHREGQLPLTGHYTPR 64 (505)
Q Consensus 6 ~~~IgiIGlG~m--------------------G~~lA~~La~~G~~V~v~dr~~~~~~~~-~~~~~~~g~~~i~~~~s~~ 64 (505)
+|||.|+|+|+- |..||..++++||+|.+.|.|.+-.++- .+..... ++...++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 368999999864 6789999999999999998887643322 2222222 467788888
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHH-HHHHHH--Hc--CCeE-EcCCCCCChh
Q 010652 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTER-RIHEAS--QK--GLLY-LGMGVSGGEE 138 (505)
Q Consensus 65 e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~-~~~~l~--~~--gi~~-v~~pvsgg~~ 138 (505)
+.++. +++.++.+|-+...-.+.++|+++++.|.+|.++.|++|...-. ++..++ .+ |+.- ..++|-|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 99999999999888889999999999999999999988766443 233332 22 4432 2234544432
Q ss_pred hhhcCCcccCC--------CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 010652 139 GARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 139 ~a~~G~~i~~g--------g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
+|-.++.| .+++..+++.++.++.| +.++.+...-.....-| .-.+....++.+.+-|....
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~G------k~~yv~padv~s~VaDm-g~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTG------KEVYVLPADVVSAVADM-GVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcC------CceEecCHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 33323322 26778889999999999 66666543222222222 12334446677778888777
Q ss_pred HhCCCCHHHH
Q 010652 211 HVGGLSNAEL 220 (505)
Q Consensus 211 ~~g~l~~~~i 220 (505)
+.-|.+.+.|
T Consensus 225 qIi~AP~eMI 234 (340)
T COG4007 225 QIIGAPKEMI 234 (340)
T ss_pred HHhCCcHHHH
Confidence 6543554433
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=93.90 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=85.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+++.+.....+ .++..+.++++++++ +|+|+.++|...
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-~~~~~~~~~~~av~~---aDIVi~aT~s~~ 201 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-FDAEVVTDLEAAVRQ---ADIISCATLSTE 201 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-CceEEeCCHHHHHhc---CCEEEEeeCCCC
Confidence 579999999999999986554 45789999999999998887632111 135677899988877 999988888763
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+ ++.. ..+++|. +|++.++.+...+++...+.+++..|+|-
T Consensus 202 p---vl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 202 P---LVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred C---EecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 3 3321 3567887 67777777777777777776677778874
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-07 Score=92.02 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=62.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++++ +|+||++++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 579999996 999999999999999999998652 267777776 9999999999876
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++.+. +.+|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66554 78999999998764
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=90.44 Aligned_cols=128 Identities=9% Similarity=0.153 Sum_probs=94.3
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhH-HHHHHHh-hc---ccCC--CCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSK-VDETLDR-AH---REGQ--LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~-~~~~~~~-~~---~~g~--~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||||+|.+|+.+|+.+. .-|.+|.+||+++.. .+.+... +. ..+. .......+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 679999999998642 1211111 00 0000 011224589999887 999999
Q ss_pred ecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
++|-....+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+.....-|...+
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~E 302 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDE 302 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCC
Confidence 999988888888 67788899999999999999889999999988765544434444433
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=78.72 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=76.1
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CCCCe---eeeCCHHHHHhhcCCCcEEEEecC
Q 010652 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQLPL---TGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g~~~i---~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+|+|+|.||.-+|..|.+.|++|+++.|++ +.+.+.+.+..- +.... ....+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 777766554210 00001 11112212233 4899999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA 121 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l 121 (505)
+. +++++++.+.+.+.+++.|+-..|+... .+.+.+.+
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g~-~~~l~~~~ 114 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMGN-EEVLAEYF 114 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSSH-HHHHHCHS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCCc-HHHHHHHc
Confidence 95 7899999999999998888888888643 23444443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.5e-06 Score=70.18 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=81.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++|||||+|.+|......+.+. +++|. ++|+++++.+.+.+.. ++..++|.+++++. .++|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 3799999999999999898877 45654 7899999988876543 45689999999984 2489999999997
Q ss_pred chHHHHHHHHhhccCCCCEEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+ .+...+..- -.++++- -.....+.+++.+..+++|..+
T Consensus 74 ~h~~-~~~~~l~~g--~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAE-IAKKALEAG--KHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHH-HHHHHHHTT--SEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHH-HHHHHHHcC--CEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 5444 333333321 1566663 2335677778888877777653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=86.29 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=79.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
..+++|||+|.+|..++..|...|.+|+++||++++.+.....+.. .....++.+.+.+ +|+||.++|...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~-----~~~~~~l~~~l~~---aDiVI~t~p~~~- 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS-----PFHLSELAEEVGK---IDIIFNTIPALV- 222 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe-----eecHHHHHHHhCC---CCEEEECCChhh-
Confidence 3689999999999999999999999999999998876655543321 1112344455554 999999998641
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+-++....+.++.+|||.++..-. +.- +..+++|+..+.+
T Consensus 223 ---i~~~~l~~~~~g~vIIDla~~pgg-td~--~~a~~~Gv~~~~~ 262 (296)
T PRK08306 223 ---LTKEVLSKMPPEALIIDLASKPGG-TDF--EYAEKRGIKALLA 262 (296)
T ss_pred ---hhHHHHHcCCCCcEEEEEccCCCC-cCe--eehhhCCeEEEEE
Confidence 224566778899999999886544 321 3456678877764
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.4e-06 Score=84.57 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=91.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
-++|||+|+|.+|+.+|.+|..-|..+..++|++...+...+... . ..+.++++.+ +|+|++++|..+.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~-------~-~~d~~~~~~~---sD~ivv~~pLt~~ 230 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA-------E-FVDIEELLAN---SDVIVVNCPLTKE 230 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc-------c-ccCHHHHHhh---CCEEEEecCCCHH
Confidence 468999999999999999999999556666887776666554432 1 4688888887 9999999999999
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~ 124 (505)
+..++ .++...+.+|.+||+++-+..-+-+.+.+.+++-
T Consensus 231 T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 231 TRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 99999 6788999999999999999999998888888764
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=85.86 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=81.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ ... ..+.++.. +..+|+||.++|.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMSG 192 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCCC
Confidence 57999999999999999999999999999999998887765432111 112 22344322 224899999999862
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.++.+.- ....+.++.+++|++...+.+ .+.+..+++|..+++
T Consensus 193 ~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 193 NIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 1211100 023467899999998876654 567777888887765
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.2e-05 Score=72.50 Aligned_cols=116 Identities=9% Similarity=0.069 Sum_probs=82.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999998 99999999999999999861 11 89999999995 5
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChhhhhcC---CcccC--CCCHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYNNIR 159 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~~a~~G---~~i~~--gg~~e~~~~v~ 159 (505)
+.++++++. .+|+|.+++...- .+ .+..|++. |+.| ++.+..+ ..+++ ..+++..+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i----~~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPF----KK----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHH----HH----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776654 3799999987532 11 24578885 7776 4444433 32222 34667778888
Q ss_pred HHHHHhhcccCCCCcEEEeCCCC
Q 010652 160 DILQKVAAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G~~G 182 (505)
.+++ | ..++.+.+..
T Consensus 109 ~l~~--G------~~~~~~t~ee 123 (197)
T PRK06444 109 EMFR--G------YHFVEMTADE 123 (197)
T ss_pred HHHc--C------CEEEEeCHHH
Confidence 8887 6 4567776543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-06 Score=85.50 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=60.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEe-CChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYN-RTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~d-r~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++. +|+|++|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 5799999 99999999999999999999995 553 34556665 999999999987
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.++.++ +.+|.+|||+|...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 655543 78999999998764
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.4e-06 Score=84.42 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||+|.||..++..|...| .+|+++||++++.+++.+.... .....++..+.+.. +|+||.+++.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCCc
Confidence 468999999999999999999866 6799999999988877765321 11222334454444 999999999876
Q ss_pred hHHHHHHHHhhcc-CCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iiId~st 108 (505)
. ...+..+.... .++.++||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 5 44444444333 35789999984
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=82.01 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
|++|-|||+|.+|+..|..|+++| ++|++-||+.++.+++......+ ..... ..+.+++.+-+++.|+||.++|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~--v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK--VEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc--ceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 468999999999999999999999 99999999999999887653110 11111 22444444444558999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE-EcCCCCCChh
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGEE 138 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~-v~~pvsgg~~ 138 (505)
... ..+++. .++.|.-++|+|...+.. .++.....+.|+.. +++++..|..
T Consensus 79 ~~~-~~i~ka---~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 79 FVD-LTILKA---CIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred hhh-HHHHHH---HHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 632 334333 455789999999877664 67777777778765 4577776644
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.4e-06 Score=83.37 Aligned_cols=110 Identities=39% Similarity=0.710 Sum_probs=97.3
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhccCC-cchhhHhhhhhhcccccccCCchh
Q 010652 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL 255 (505)
Q Consensus 178 ~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ 255 (505)
.|.. +++|++||++.++.++.++|++.++++.| |+|++++.++ |+.|. ++||+++++.+++.+++ .
T Consensus 164 ~G~~---~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~ 231 (298)
T TIGR00872 164 CGSG---HFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------D 231 (298)
T ss_pred ccHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------c
Confidence 4665 78999999999999999999999999974 3799999887 78886 69999999999987632 4
Q ss_pred HHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccc
Q 010652 256 VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 256 ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~ 299 (505)
++.+.+.+.++++|+|++.+|.++|+|+|++++|++.|+.|..+
T Consensus 232 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 232 LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 56788888899999999999999999999999999999999877
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.8e-06 Score=74.23 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++.|||+|-||+.++..|++.|.+ |+++||+.++.+++.+..... ...+...+++.+.... +|+||.++|.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~~---~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQE---ADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHHT---ESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHhh---CCeEEEecCCCC
Confidence 46899999999999999999999997 999999999999988765211 0112334455555555 999999999985
Q ss_pred hHHHHHHHHhhccCCC-CEEEeCCCCChhhH
Q 010652 85 PVDQTIAALSEHMSPG-DCIIDGGNEWYLNT 114 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~t 114 (505)
. .+-++..+...+. .+++|.+. |.+.
T Consensus 88 ~--~i~~~~~~~~~~~~~~v~Dla~--Pr~i 114 (135)
T PF01488_consen 88 P--IITEEMLKKASKKLRLVIDLAV--PRDI 114 (135)
T ss_dssp T--SSTHHHHTTTCHHCSEEEES-S--S-SB
T ss_pred c--ccCHHHHHHHHhhhhceecccc--CCCC
Confidence 4 1223333332222 49999973 4444
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=80.65 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=65.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHH----hhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLD----RAHREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~----~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+.... .....+ ..+++.+.+.++ +.+ +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 3699999999999999999999876 99999999876543221 111000 013444456654 344 9999998
Q ss_pred cCCC---------------chHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
+..+ +.++++++.+.+.. +..++|..+|-..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d 123 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVD 123 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 7322 12445556666665 4566777766543
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=81.79 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=72.5
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++||||+|.||...+..|.. ...+|.+|||++++.+.+.+.....+ ..+..+.++++++++ +|+|++|+|+..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g-~~v~~~~~~~eav~~---aDiVitaT~s~~ 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYE-VPVRAATDPREAVEG---CDILVTTTPSRK 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhC-CcEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999997666653 45689999999999988876432111 135678999999987 999999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
++ ++ ...+++|..|...|+..|
T Consensus 205 P~---~~--~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 205 PV---VK--ADWVSEGTHINAIGADAP 226 (325)
T ss_pred cE---ec--HHHcCCCCEEEecCCCCc
Confidence 43 21 234678998888877655
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.6e-06 Score=80.68 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=61.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||. |.||.+||.+|.++|+.|++|... +.++++.++. +|+||.+++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 57999999 999999999999999999999311 2367777777 9999999999876
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++... +.+|.+|||+|...
T Consensus 215 v~~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH------ccCCcEEEEeccee
Confidence 66543 78999999998764
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=77.91 Aligned_cols=87 Identities=16% Similarity=0.281 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||.|.-|.+-|+||.++|.+|++--|.... .+.+.+.| +. ..+++|++.. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 58999999999999999999999999988776655 33333332 33 5699999987 99999999995 4
Q ss_pred HHHHHH-HHhhccCCCCEEEe
Q 010652 86 VDQTIA-ALSEHMSPGDCIID 105 (505)
Q Consensus 86 v~~vl~-~l~~~l~~g~iiId 105 (505)
-.++.+ ++.|.|.+|+.+.-
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~F 107 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGF 107 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEe
Confidence 566775 99999999986643
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.2e-05 Score=71.78 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||+||+|.+|..+...+.+. +++ |.+|||+.++..++.+... ...+++++|+++. +|+++.|...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCH-
Confidence 4799999999999999877754 354 7799999999888776432 2445899999876 9999999866
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+++++...+++.. ..+-+|+..+.-..+...++...+.+.+-+.+
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv 115 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARV 115 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEE
Confidence 4666665554442 12334444444443444444444555544433
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.9e-05 Score=71.93 Aligned_cols=98 Identities=20% Similarity=0.311 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH--hhcccCCCCeeeeCCHHHHHhh--cCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD--RAHREGQLPLTGHYTPRDFVLS--IQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~--~~~~~g~~~i~~~~s~~e~v~~--l~~advIil~vp~ 82 (505)
|+|.|||+|.+|..+|+.|.+.||+|.+.|+++++++++.+ .... -+....+-.+++++ +..+|+++.++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~----~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH----VVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE----EEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 58999999999999999999999999999999999888554 2211 13344455555554 3568999999888
Q ss_pred CchHHHHHHHHhhc-cCCCCEEEeCCCC
Q 010652 83 GSPVDQTIAALSEH-MSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~-l~~g~iiId~st~ 109 (505)
+ .+..++-.+... +....+|.-..+.
T Consensus 77 d-~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 77 D-EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred C-HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 5 567777666543 5566677666554
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.7e-05 Score=67.45 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=70.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh-CCCcEE-EEeCChh-H----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAE-KGFPIS-VYNRTTS-K----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~-~G~~V~-v~dr~~~-~----~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|||+|+|+ |.||+.++..+.+ .|+++. ++|++++ . +.++.... . .++...++++++.+. +|++|-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~---~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-P---LGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T----SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-C---cccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 788855 6788872 1 11121111 1 246778999999988 999998
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~ 124 (505)
...+ +.+.+.++.... .|..+|-++|+......+..+.+.++
T Consensus 74 fT~p-~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 74 FTNP-DAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp ES-H-HHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred cCCh-HHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 8733 455555554444 47888888998865555555555544
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.8e-05 Score=76.64 Aligned_cols=100 Identities=19% Similarity=0.252 Sum_probs=67.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH----HHhhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~----~~~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||..+|..++.+|+ +|.++|++++..+.. .+...... ..+++.+.+.++ +++ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 899999977643311 11111000 014666678777 344 99999999
Q ss_pred CCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
+.+. .++++++++.++. ++.+||..||-..
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~d 122 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLD 122 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 7421 2444556676765 5667888777543
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.8e-05 Score=67.82 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=62.9
Q ss_pred cEEEEcc-cHHHHHHHHHHHhC-CCcEEEE-eCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 8 RIGLAGL-AVMGQNLALNVAEK-GFPISVY-NRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~-G~~V~v~-dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
||+|+|. |.+|..++..|.++ ++++... +++.++-+.+........ ++ ....+.+++.. ..+|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFEE--LAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChhh--cCCCEEEEcCCcH
Confidence 6899994 99999999999985 8887755 665443333332221100 01 00111122221 2489999999997
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
...+++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 45556556666778999999999875
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=75.31 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=65.6
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH--H--HHhhcccC-CCCeeeeCCHHHHHhhcCCCc
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDE--T--LDRAHREG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~--~--~~~~~~~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
|.....+||+|||+|.||..+|..++..|+ +|.++|+++++... + .......+ ..++..+.+.+++ ++ +|
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~~---aD 76 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-AG---SD 76 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-CC---CC
Confidence 333345789999999999999999999996 89999999985321 1 11100000 0135555676543 44 99
Q ss_pred EEEEecCCC----c----------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 75 SVIILVKAG----S----------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 75 vIil~vp~~----~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+||++.-.+ . .++++.+.+.+.. +..++|..||..
T Consensus 77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 999977221 1 1334445555655 444777777644
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.4e-05 Score=81.95 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|+|||+|.||..++..|...|. +|+++||++++.+.+.+...... ..+...+++.+.+.. +|+||.+++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~-i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVE-IIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCc-eEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 3679999999999999999999997 69999999999988876531100 011223455555555 999999997765
Q ss_pred hH--HHHHHHHhhcc---CCCCEEEeCCC
Q 010652 85 PV--DQTIAALSEHM---SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v--~~vl~~l~~~l---~~g~iiId~st 108 (505)
++ ++.++.+.+.- ....++||.+-
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 42 33334433211 12247777643
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=74.26 Aligned_cols=87 Identities=10% Similarity=0.222 Sum_probs=61.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.+|+|+|+|.||...+..+.++ ++++. +||+++ ++.. +. . +.....+.+++..+ +|+|++|+|+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~-~-----~v~~~~d~~e~l~~---iDVViIctPs 70 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TE-T-----PVYAVADDEKHLDD---VDVLILCMGS 70 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hc-C-----CccccCCHHHhccC---CCEEEEcCCC
Confidence 46999999999999999999876 78876 579986 4322 11 1 22334566565544 9999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.... +.+.+.|..|.-+||...
T Consensus 71 ~th~----~~~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 71 ATDI----PEQAPYFAQFANTVDSFD 92 (324)
T ss_pred ccCH----HHHHHHHHcCCCEEECCC
Confidence 7553 444555667888888754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=3e-05 Score=81.12 Aligned_cols=194 Identities=18% Similarity=0.135 Sum_probs=109.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC------hhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~------~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
++|+|||+|..|.+.|.||...|++|++--|. .+..+.+.+.+ +. ..+++|++.. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~-v~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FK-VGTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Cc-cCCHHHHHHh---CCEEEEcC
Confidence 68999999999999999999999999954433 33334433332 33 3678888887 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhh---hc--CC-ccc-CC---
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGA---RH--GP-SLM-PG--- 149 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a---~~--G~-~i~-~g--- 149 (505)
|+. .-..+.+++.|.|++|.++.-. .+.--. -......+++..+- +|=..|.... .. |. +++ +-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~fs-HGFni~---~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~q 180 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGYS-HGFNIV---EVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN 180 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEec-CCceee---eCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecC
Confidence 997 4555668999999999877543 222100 00112233554433 4544443322 12 22 222 21
Q ss_pred -CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhh-hHhHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHH
Q 010652 150 -GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISE-AYDVLKHVGGLSNAELA 221 (505)
Q Consensus 150 -g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK-~v~N~i~~~~~~~i~E-a~~l~~~~g~l~~~~i~ 221 (505)
-+..+++.+...-.++|+.- .-++...- ..-...- +-..++.-+.++.+.| .|..+.+.| ++|+...
T Consensus 181 D~~g~a~~~ala~a~~iG~~r---agv~~ttf-~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G-~~pe~A~ 250 (487)
T PRK05225 181 DPKGEGMAIAKAWAAATGGHR---AGVLESSF-VAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEG-TDPAYAE 250 (487)
T ss_pred CCCchHHHHHHHHHHHhCCCc---cceeecch-HHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHH
Confidence 23346777777777777421 11221110 0000000 1223334444443333 345566667 8888764
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.5e-05 Score=67.71 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=62.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|+|.|..|+.+|+.|...|-+|++++++|-+.-++...+ +.. .++++++.. +|+||.++-....+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCcccc
Confidence 4699999999999999999999999999999998765555443 343 478888776 99999887654322
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
. .+..+.+++|.++.+.+....
T Consensus 93 ~---~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 93 T---GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp ----HHHHHHS-TTEEEEESSSSTT
T ss_pred C---HHHHHHhcCCeEEeccCcCce
Confidence 1 345566889999999877543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.4e-05 Score=74.94 Aligned_cols=116 Identities=9% Similarity=0.121 Sum_probs=81.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~-G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++||||+|..|...++.+..- . -+|.+|||++++.+++.++.....+..+..+.++++++.. +|+|+.++++..
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 5799999999999998888763 2 3699999999999988765432101246778999999988 999999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHH-HHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~-~l~~~gi~~v~~ 131 (505)
++ ++ ...+++|..|.-.++-.|. .+++.. .+......|+|.
T Consensus 195 P~---~~--~~~l~pg~hV~aiGs~~p~-~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 PI---FN--RKYLGDEYHVNLAGSNYPN-RREAEHSVLNDADIVVTEH 236 (301)
T ss_pred cE---ec--HHHcCCCceEEecCCCCCC-cccCCHHHHHhCCEEEECC
Confidence 43 21 1346788888877776653 334433 333333456663
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.5e-05 Score=80.91 Aligned_cols=105 Identities=13% Similarity=0.244 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++++|+|+|.+|.+++..|++.|++|.++||++++.+.+.+.... . ..+.+++ ..+..+|+||.|+|.+..+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~-~~l~~~DiVInatP~g~~~ 404 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESL-PELHRIDIIINCLPPSVTI 404 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHh-cccCCCCEEEEcCCCCCcc
Confidence 579999999999999999999999999999999988877654211 1 1122222 1234599999999998654
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... +. .+++|+....+.+. +.+..+++|...++
T Consensus 405 ~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 405 PKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred hhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 321 11 38999988765543 55666777776554
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=75.40 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=79.8
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.+|...+..++. .+. +|.+|||++++.+++.+.........+..+.++++++.+ +|+|+.|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 579999999999998887764 354 699999999999888764321100134567888988877 999999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+ ++. ..+++|..|+..++-.|...+.-...+.....-|+|.
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 3 333 4578999998888766543322223333322345554
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0001 Score=74.74 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=79.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.+|...+..+.. .+. +|.+|||++++.+++.++....+ ..+. +.+.++++++ +|+|+.++|...
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~s~~ 200 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATTSRT 200 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccCCCC
Confidence 579999999999999999975 554 69999999999988887643211 1222 5788888887 999999999986
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
++ ++. .+++|..|.-.|+..|.. +++...+-.+.-.|+|.
T Consensus 201 Pl---~~~---~~~~g~hi~~iGs~~p~~-~El~~~~~~~a~v~vD~ 240 (304)
T PRK07340 201 PV---YPE---AARAGRLVVAVGAFTPDM-AELAPRTVRGSRLYVDD 240 (304)
T ss_pred ce---eCc---cCCCCCEEEecCCCCCCc-ccCCHHHHhhCeEEEcC
Confidence 53 332 367999998888766633 33322222222346664
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00022 Score=72.61 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=60.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHH-HHHhhcccCCC-C-eeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDE-TLDRAHREGQL-P-LTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~-~~~~~~~~g~~-~-i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+. ..+........ . ...+.+.++ ++ .+|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~---~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CK---GADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hC---CCCEEEEccC
Confidence 48999999999999999999999 589999999887653 21111000000 1 112344443 33 4999999997
Q ss_pred CCc---------------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+. .++++.+.+..+-+.| +++..+|
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~g-iiiv~tN 117 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDA-ILLVVTN 117 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecC
Confidence 642 1344445666655444 4444444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.6e-05 Score=78.70 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCCc
Confidence 57999999999999999999999 7899999999988777654211 11222345555555 9999999987654
Q ss_pred HH--HHHHHHhhccCCCCEEEeCC
Q 010652 86 VD--QTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 86 v~--~vl~~l~~~l~~g~iiId~s 107 (505)
+- +.+......-..+.+++|.+
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeC
Confidence 31 22222211111234788875
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00019 Score=70.56 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=76.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG---FPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G---~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||||||+|.||..++..|.+.+ +++ .+++|++++.+++... ...+.++++++.. ++|+|+.|-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCC
Confidence 479999999999999999987642 554 4789998887777543 3578899997532 4999999987
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhh--HHHH-HHHHHHcCC-eEEcCCCCCChh
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TERR-IHEASQKGL-LYLGMGVSGGEE 138 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--t~~~-~~~l~~~gi-~~v~~pvsgg~~ 138 (505)
. .++++....++. .|.-++-.|.+-..| ..+. .+..++.|. -|+..+-.||-.
T Consensus 72 ~-~av~e~~~~iL~---~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 72 Q-QAIAEHAEGCLT---AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHHHh---cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 6 466666555544 454444455444433 2322 333333333 355555555543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.8e-05 Score=77.74 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=68.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee-eeCCHHHHHhhcCCCcEEEEecCCC-c
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKAG-S 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~-~~~s~~e~v~~l~~advIil~vp~~-~ 84 (505)
.+|.|||+|.+|...+..+...|.+|+++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++.+ .
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 469999999999999999999999999999999988776554321 111 1233444544455699999997431 1
Q ss_pred hHHHHH-HHHhhccCCCCEEEeCCC
Q 010652 85 PVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iiId~st 108 (505)
....++ ++....++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111122 555566788999999764
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.4e-05 Score=78.47 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||.|.+|+.+|..+...|.+|+++|+++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 5799999999999999999999999999999987754433322 22 3467888776 9999998643
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~ 110 (505)
..++ .+....+++|.++++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3455 46777889999999998873
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=75.03 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=74.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +. ..++++++.. +|+||.++..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~-v~~leeal~~---aDVVItaTG~---- 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKI---GDIFITATGN---- 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CE-eCCHHHHHhc---CCEEEECCCC----
Confidence 5799999999999999999999999999999998765544332 22 2356777665 9999987654
Q ss_pred HHHHH-HHhhccCCCCEEEeCCCCCh-hhHHHHHHHH
Q 010652 87 DQTIA-ALSEHMSPGDCIIDGGNEWY-LNTERRIHEA 121 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iiId~st~~~-~~t~~~~~~l 121 (505)
..+++ .....+++|.++++.+.... -+...+.+.+
T Consensus 261 ~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 261 KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 34453 46778899999999888654 4455555443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=73.78 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=61.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH----HHhhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 9 IGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~----~~~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+.. .......+ ..++..+.+.++ +++ ||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d---ADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IAG---SDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC---CCEEEEecCC
Confidence 6899999999999999999887 999999998754321 11110000 013444455554 333 9999998843
Q ss_pred Cc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. .++++++++.+.. +..++|..||-.
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 21 1334456666655 556666666644
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00018 Score=73.27 Aligned_cols=115 Identities=13% Similarity=0.221 Sum_probs=81.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.++...++.+..- --+|.+|||++++.+++.+.....+ ..+..+++.+++++. +|+|+.++++..
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~---ADIV~taT~s~~ 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG-FAVNTTLDAAEVAHA---ANLIVTTTPSRE 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC-CcEEEECCHHHHhcC---CCEEEEecCCCC
Confidence 5799999999999998887753 2479999999999988876432211 256778999999987 999999998875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHH-HHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~-~l~~~gi~~v~~ 131 (505)
++ ++ ...+++|..|+-.|+-.|. .+++-. .+......|+|-
T Consensus 205 P~---~~--~~~l~~G~hi~~iGs~~p~-~~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 205 PL---LQ--AEDIQPGTHITAVGADSPG-KQELDAELVARADKILVDS 246 (315)
T ss_pred ce---eC--HHHcCCCcEEEecCCCCcc-cccCCHHHHhhCCEEEECC
Confidence 43 31 1356789998888876653 333333 233223345664
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.8e-05 Score=79.22 Aligned_cols=94 Identities=20% Similarity=0.190 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||+|.||..++..|...|. +|+++||++++.+.+.+.... ......+..+.+. .+|+||.+++.+..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPHP 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCCc
Confidence 579999999999999999999997 799999999998877664211 1222233444444 49999999987654
Q ss_pred HHHHHHHHhhcc----CCCCEEEeCCC
Q 010652 86 VDQTIAALSEHM----SPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l----~~g~iiId~st 108 (505)
+-. .+.+.+.+ ..+.++||.+.
T Consensus 256 ~i~-~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIG-KGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEc-HHHHHHHHhhccCCCeEEEEeCC
Confidence 311 12222222 24568888863
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00015 Score=77.08 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=54.7
Q ss_pred CcEEEEcccHHHHHHHH--HH----HhCCCcEEEEeCChhHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLAL--NV----AEKGFPISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~--~L----a~~G~~V~v~dr~~~~~~~~~~~~~~----~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.||.+++. .+ +.+|++|.+||+++++.+........ .+ ..++..++++++.+++ +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 47999999999998766 34 45688999999999887654432110 00 0156778888888877 999
Q ss_pred EEEecCCC
Q 010652 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999864
|
linked to 3D####ucture |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00045 Score=59.28 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=69.5
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCCchH
Q 010652 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~~v 86 (505)
|-|+|.|.+|..++..|.+.+.+|++.|+++++++.+.+.+... +....+-.+..+ .+.+++.|+++.+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999998779999999999999988776321 222223333333 345689999999886433
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
..++..+....+...+++-..+. ...+.++..|+..+
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 33333333333334555544332 22444555566543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00021 Score=73.26 Aligned_cols=96 Identities=13% Similarity=0.226 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.+|...+..|+. .+. +|.+|||++++.+++.+.........+...+++++.++. +|+|+.++|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 479999999999999999973 664 699999999999988765321100134557888888876 999999999865
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ++. ...+++|..|...+.-.
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCC
Confidence 3 221 12467888887766543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00057 Score=79.20 Aligned_cols=122 Identities=12% Similarity=0.088 Sum_probs=86.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-Cc-------------EEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FP-------------ISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~-------------V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l 70 (505)
+++|+|||+|.||...+..|++.. ++ |++.|+++++.+++.+...+. ..+.. ..+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 468999999999999999998763 33 899999999888776643110 01333 56778887755
Q ss_pred CCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCC
Q 010652 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVS 134 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvs 134 (505)
+.+|+|+.|+|..-. ..++. ..+..|.-+++.+ ....++.++.+..++.|+.++ ++++.
T Consensus 647 ~~~DaVIsalP~~~H-~~VAk---aAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e~GlD 706 (1042)
T PLN02819 647 SQVDVVISLLPASCH-AVVAK---ACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCEMGLD 706 (1042)
T ss_pred cCCCEEEECCCchhh-HHHHH---HHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEECCccC
Confidence 679999999999532 33333 3345677788877 445567777788888888765 35543
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0004 Score=69.67 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CC-----cEEEEeCChh------HHHHHHHh-hcccCC-------CCeeeeCCHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--GF-----PISVYNRTTS------KVDETLDR-AHREGQ-------LPLTGHYTPR 64 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--G~-----~V~v~dr~~~------~~~~~~~~-~~~~g~-------~~i~~~~s~~ 64 (505)
..||+|||.|++|+.+|+.+.++ ++ +|..|-+..+ ++.+.... ..+-.. .++.+.+++.
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ 100 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV 100 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHH
Confidence 35899999999999999998865 22 5776644332 22222221 111000 1678888999
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 65 e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
+++.+ +|+++..+|. +.+.+++++|..+++++...|.++.+..
T Consensus 101 ea~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 101 EAAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred HHhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 98887 9999999999 6899999999999999999999887653
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=73.68 Aligned_cols=116 Identities=18% Similarity=0.125 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|.+|++++..|+..| .+|+++||+.++.+++.+.....+ .+....+..+.+. .+|+||.++|.+..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~---~~DivInaTp~g~~ 198 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEELA---DFDLIINATSAGMS 198 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhccc---cCCEEEECCcCCCC
Confidence 57999999999999999999999 689999999999888776432110 0111112223333 49999999998742
Q ss_pred HHH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 86 VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
-.. ...-....++++.+++|..-. |..| .+.+..+++|...+
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY~-P~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIYG-PLPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCcCeec
Confidence 100 000011346778999999764 4444 45555667776544
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00032 Score=72.05 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.+.........+..+.++++++.+ +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 579999999999998888875 44 5799999999999988765322100134567888888877 999999999865
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ++.. ..+.+|..|...+...
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 4 2321 1256777776665533
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00029 Score=63.12 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=76.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|.|||+|.+|..++.+|++.|+ +++++|.+.-....+..+... ....+-.-.....+.++++. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 699999775433333221100 00000011222333333332 5566666554321
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
... ....+.+-++||+++.. +.....+.+.+.+.++.|++++..|
T Consensus 80 ~~~----~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN----LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh----HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 13445678999999887 4556667778888899999988776
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00045 Score=68.72 Aligned_cols=118 Identities=15% Similarity=0.141 Sum_probs=72.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~--~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+||||||+|.||+.++..+.+. +.++. ++++.. ++....... ++..+++++++ . .++|+|+.|.|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~~l-~--~~~DvVve~t~~ 71 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-------AVRVVSSVDAL-P--QRPDLVVECAGH 71 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-------CCeeeCCHHHh-c--cCCCEEEECCCH
Confidence 6999999999999999999876 45544 445432 222221111 24667888887 3 349999999988
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCC---ChhhHHHHHHHHHHcCCe-EEcCCCCCChh
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~---~~~~t~~~~~~l~~~gi~-~v~~pvsgg~~ 138 (505)
. ...+.... .|..|.-++..+.. ......++.+..++.|.. ++..+..|+..
T Consensus 72 ~-~~~e~~~~---aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 72 A-ALKEHVVP---ILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred H-HHHHHHHH---HHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 5 44444433 34466656655554 232344555666666654 45555555543
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0003 Score=74.14 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +. ..+++++++. +|+||.++..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~---- 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGN---- 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCC----
Confidence 5799999999999999999999999999999998765544332 23 3467777765 9999988744
Q ss_pred HHHHH-HHhhccCCCCEEEeCCCCCh
Q 010652 87 DQTIA-ALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iiId~st~~~ 111 (505)
..+++ .....+++|.++++.+....
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 23453 56777899999999887643
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00051 Score=68.98 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=76.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-++|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999988876432110 122222233333333459999999998864
Q ss_pred HHHH-HHHHh-----hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 86 VDQT-IAALS-----EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~v-l~~l~-----~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
.+.. +.... ..+.++.+++|.--.. ..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CCC-HHHHHHHHCCCEEE
Confidence 4321 11111 1234678899986543 333 44455566665544
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0004 Score=65.61 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=67.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++.|+|. |.+|..++..|++.|++|++++|+.++.+.+.+.........+.. ..+.+++.+.++++|+||.+.|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 57999995 999999999999999999999999998877765321000001222 234444444444599999999987
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.. ..........++.+++|..-..
T Consensus 109 ~~---~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VE---LLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ce---echhhhcccCceeEEEEccCCC
Confidence 53 1111222344578999985544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00073 Score=70.88 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=78.1
Q ss_pred EEEEcccHHHHHHHHHHHhCC-C-cEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEecCC
Q 010652 9 IGLAGLAVMGQNLALNVAEKG-F-PISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G-~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~vp~ 82 (505)
|.|+|.|.+|+.++..|++++ + +|++.||+.++.+++.+..... ++.. ..+.+++.+-++++|+||.|+|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999998887531100 1211 23444444445569999999987
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChh
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~ 138 (505)
. ....+++.. ++.|.-+||.+. ......++.+..+++|+.++ +++...|..
T Consensus 78 ~-~~~~v~~~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 78 F-FGEPVARAC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp G-GHHHHHHHH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred c-hhHHHHHHH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 5 444555443 345788999333 24455556667777788665 467776644
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00069 Score=69.43 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCCcEEEEccc-HHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEe
Q 010652 5 ALSRIGLAGLA-VMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgiIGlG-~mG~~lA~~La~~G~---~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~ 79 (505)
+++||||||+| .++...+..+.+.+. -|.++|+++++.+++.++. ++ ..++|++++++. .+.|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~------~~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF------GIAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc------CCCcccCCHHHHhcC-CCCCEEEEc
Confidence 35799999998 555668888888763 3668899999988887754 23 478899999986 235999999
Q ss_pred cCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 80 VKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+|+....+-++.. |..|+ ++++- =+....+.+++.+..+++|..+
T Consensus 75 tp~~~H~e~~~~A----L~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 75 TPNALHAELALAA----LEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred CCChhhHHHHHHH----HhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 9998665544333 44454 44441 1233456666666666665543
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00018 Score=72.33 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=76.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|-+|++++..|+..|. +|+++||+.++.+.+.+..... ....+....+..+.+. .+|+||.++|.+-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCCC
Confidence 579999999999999999999998 7999999999998887542110 0001222233333344 4999999998863
Q ss_pred hHHHHHHHH-hhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 85 PVDQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l-~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.-..-. .+ ...+.++.+++|..-... .| .+.+..+++|...++
T Consensus 205 ~~~~~~-~~~~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 205 AKHPGL-PLPAELLRPGLWVADIVYFPL-ET-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCC-CCCHHHcCCCcEEEEeeeCCC-CC-HHHHHHHHCCCeEec
Confidence 110000 00 123677889999876543 34 455556677765543
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00041 Score=73.57 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=71.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|+.+|..+...|.+|+++|+++.+.......+ +.. .++++++.. +|+|+.+....
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~--- 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNK--- 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCc---
Confidence 5799999999999999999999999999999987755444333 222 367787776 99999865442
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCC-ChhhHHHHH
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNE-WYLNTERRI 118 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~-~~~~t~~~~ 118 (505)
.++ .+....+++|.++++.+.. ..-+...+.
T Consensus 321 -~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~ 353 (477)
T PLN02494 321 -DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLE 353 (477)
T ss_pred -cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHh
Confidence 333 5667789999999999884 333443443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00061 Score=69.67 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||..+|..++..| .+|.++|+++++.+...- .... .+ ..+++...+++++ ++ +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEEC
Confidence 468999999999999999999999 689999999875432111 1000 00 0134444566644 44 9999999
Q ss_pred c--CCC-------------chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 V--KAG-------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 v--p~~-------------~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
. |.. ..++++.+.+.+.. +..++|..||-.
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 8 332 22445556666664 566777777644
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00037 Score=69.00 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=65.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+||+|+|+ |.||+.++..+.+. ++++. ++|+++++.... .. .++..+++++++++. +|+|+.+.|+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~------~~i~~~~dl~~ll~~---~DvVid~t~p~ 71 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GA------LGVAITDDLEAVLAD---ADVLIDFTTPE 71 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CC------CCccccCCHHHhccC---CCEEEECCCHH
Confidence 68999998 99999999988864 67765 589988765443 11 135567888888765 99999888764
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC-hhhHHHHHH
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIH 119 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~-~~~t~~~~~ 119 (505)
...+++.. .+..|.-++..+|.. +.+..++.+
T Consensus 72 -~~~~~~~~---al~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 72 -ATLENLEF---ALEHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred -HHHHHHHH---HHHcCCCEEEECCCCCHHHHHHHHH
Confidence 34444433 344566666555554 333333444
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00073 Score=74.47 Aligned_cols=116 Identities=18% Similarity=0.319 Sum_probs=77.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
.+|-|+|+|.+|+.+++.|.++|++|++.|.|+++++++.+.+.. -+....+-++..+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~----~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR----AVLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe----EEEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 579999999999999999999999999999999999988765432 1333334445544 3457999999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
....++..+....+.-.++.-. + .+ +..+.+++.|++++=.|
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~-~-~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARA-H-YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEE-C-CH----HHHHHHHHcCCCEEECh
Confidence 5444444444433333444433 2 22 33334455677766544
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00038 Score=70.99 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=84.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++|||+|.++......+..- .-+|.+|+|+++..+++.......+...+..+.|.+++++. +|+|+.++|+..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 4699999999999998888753 34799999999999988865433221136788999999998 999999999976
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
+ ++. ...+++|..|.-.++-.|.-.+--.+.+...+.-|+|.+
T Consensus 208 P---il~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 P---VLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred C---eec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 3 221 245678998888877655443333333343346677754
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00084 Score=68.24 Aligned_cols=98 Identities=11% Similarity=0.126 Sum_probs=64.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccC---CCCee-eeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREG---QLPLT-GHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~g---~~~i~-~~~s~~e~v~~l~~advIil~v 80 (505)
+||+|||+|.+|..+|..|+.+| ++|.++|+++++.+.........- ..+.. ...+.++ +.+ +|+||+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~~---aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CKD---ADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hCC---CCEEEEcc
Confidence 37999999999999999999999 689999999988765543211000 00112 2234444 333 99999998
Q ss_pred CCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..+. .++++.+.+.++. +..++|..||-
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNP 119 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCh
Confidence 6531 1344445666654 45577777653
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00045 Score=72.17 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=65.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++.|||+|-||.-.|.+|+++| .+|++.||+.++..++.++... .. .+++++...+..+|+||.++.++.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~----~~---~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA----EA---VALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC----ee---ecHHHHHHhhhhCCEEEEecCCCc
Confidence 357999999999999999999999 5799999999999998876431 12 344554444445999999986654
Q ss_pred hH--HHHHHHHhhccCCCCEEEeCCC
Q 010652 85 PV--DQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v--~~vl~~l~~~l~~g~iiId~st 108 (505)
++ +..++..... ++.-++||.+.
T Consensus 251 ~ii~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 251 PIITREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred cccCHHHHHHHHhc-ccCeEEEEecC
Confidence 43 1222222221 12247888754
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.001 Score=68.49 Aligned_cols=111 Identities=11% Similarity=0.129 Sum_probs=77.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
..||||||+ .||...+..+.+. ++++. ++|+++++.+++.++. ++..+++.+|++++ .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 468999999 6899999999875 46655 7899999998887653 35578999999976 8888888864
Q ss_pred C---chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 G---SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~---~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
. ..-.++.. ..++.|.-|+----....+.+++.+..+++|+.+.
T Consensus 73 ~~P~~~H~e~a~---~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSALAR---ALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHHHHH---HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 11122222 23445654444333335777777777778887665
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=73.80 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
.++|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+....+-.++.+ .++++|.++++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vv~~~~d~ 475 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK----VYYGDATQLELLRAAGAEKAEAIVITCNEP 475 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe----EEEeeCCCHHHHHhcCCccCCEEEEEeCCH
Confidence 3579999999999999999999999999999999999988765432 1333445555554 346799999999997
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+....++..+....+.-.+++-..+ +...+.+.+.|+..+
T Consensus 476 ~~n~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 476 EDTMKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQF 515 (601)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCEE
Confidence 6555555554444333345543322 133445566677655
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0005 Score=70.52 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=77.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~-G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|||||+|.+|...+..+... +. .|.+|||++++.+++.+.........+..+.+.+++++ +|+|++|+|+..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 5799999999999999999843 33 68899999999888876532110012556788888874 899999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
++ ++ ...+++|..|...++..|. .+++...+-.+.-.|+|-
T Consensus 206 P~---~~--~~~l~~g~hV~~iGs~~p~-~~El~~~~~~~a~vvvD~ 246 (326)
T PRK06046 206 PV---VK--AEWIKEGTHINAIGADAPG-KQELDPEILLRAKVVVDD 246 (326)
T ss_pred cE---ec--HHHcCCCCEEEecCCCCCc-cccCCHHHHhCCcEEECC
Confidence 43 21 1346789988888776653 233332222223345664
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00099 Score=66.32 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=67.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCC-hhHHH-HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAE-KGFPIS-VYNRT-TSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~-~G~~V~-v~dr~-~~~~~-~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|+| +|.||+.++..+.+ .++++. ++||+ +++.. .+.+..... ..++..+++++++.. .+|+||.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECCC
Confidence 6899999 69999999999986 577765 57854 32211 111110000 013566788888833 3899999987
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC-hhhHHHHHHHHHHcCCeEE
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~t~~~~~~l~~~gi~~v 129 (505)
+. ...+.+. ..+..|.-++..++.. +....++.+..++.|+.++
T Consensus 78 p~-~~~~~~~---~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 78 PE-GVLNHLK---FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred hH-HHHHHHH---HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEE
Confidence 63 4444433 3445666566555544 3334444444445455444
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0015 Score=72.77 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=79.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
..+|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+....+-.++.+ .++++|.++++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDP 475 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe----EEEEeCCCHHHHHhcCCCcCCEEEEEeCCH
Confidence 3579999999999999999999999999999999999988775432 1333444455554 456899999999887
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
+....++..+....+.-.+++-..+ .+....+.+.|+..+...
T Consensus 476 ~~n~~i~~~ar~~~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e 518 (621)
T PRK03562 476 QTSLQLVELVKEHFPHLQIIARARD------VDHYIRLRQAGVEKPERE 518 (621)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECC------HHHHHHHHHCCCCEEehh
Confidence 6555444444443333345443322 133445666787766433
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0006 Score=71.75 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....+ +.. .+.++.+.. +|+||.++...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~--- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNK--- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999999877666543 222 245666655 99999987543
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~ 109 (505)
.++ ......+++|.++++.+..
T Consensus 269 -~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 -DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -HHHHHHHHhcCCCCcEEEEeCCC
Confidence 344 3457788999999998854
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0004 Score=70.80 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=65.4
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+..-+..+.. .+ -+|.+|||++++.+++.+..... ...+..+++++++++. +|+|+.++|...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s~~ 204 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPSTT 204 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCCCC
Confidence 479999999999999888765 33 37999999999999888765431 2367889999999998 999999999876
Q ss_pred --hHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 85 --PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 --~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
++ ++ ...+++|..|+..++-.|.
T Consensus 205 ~~P~---~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 205 PAPV---FD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp EEES---B---GGGS-TT-EEEE-S-SSTT
T ss_pred CCcc---cc--HHHcCCCcEEEEecCCCCc
Confidence 42 21 2467899999888876653
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00024 Score=61.56 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=72.4
Q ss_pred CcEEEEc----ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAG----LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIG----lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++|+||| -+.+|..+..+|.++||+|+..|...+.+ . +...+.+++|.-.. .|++++++|.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i---------~---G~~~y~sl~e~p~~---iDlavv~~~~ 65 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI---------L---GIKCYPSLAEIPEP---IDLAVVCVPP 65 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE---------T---TEE-BSSGGGCSST----SEEEE-S-H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE---------C---cEEeeccccCCCCC---CCEEEEEcCH
Confidence 3699999 68999999999999999999998765321 1 46778899883233 8999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
..+.++++++... ..+.+++..+ ...++..+.+++.|+.+++..
T Consensus 66 -~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 66 -DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp -HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS
T ss_pred -HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCC
Confidence 4678888888764 4567777776 345566777788899988643
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0013 Score=59.08 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhh----cccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRA----HREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~----~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++...... .... .+........+.+++ +|+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~-~~~~i~~~~~~~~~~---aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP-SPVRITSGDYEALKD---ADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST-EEEEEEESSGGGGTT---ESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc-ccccccccccccccc---ccEEEEe
Confidence 58999999 9999999999999875 7999999987654433211 0000 012222233333343 9999998
Q ss_pred cCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.-.+ . .++++.+.+.++- +..+++-.||-
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 7332 1 2344445566655 55677777664
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0063 Score=58.71 Aligned_cols=175 Identities=11% Similarity=0.159 Sum_probs=102.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh----------hHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT----------SKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~----------~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~ 72 (505)
.++|+|.|+|++|+.+|..|.+.|.. |.+.|.+. +.++...+.+... .... ..+.+++.. + +
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 46899999999999999999999885 55779887 6655544432211 1100 112234433 2 5
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCH
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSF 152 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~ 152 (505)
+|+++-|.+.+....+.... + .=++|+...|.... .+..+.|.++|+.++.--+.. .||--
T Consensus 98 ~DVlipaA~~~~i~~~~a~~----l-~a~~V~e~AN~p~t--~~a~~~L~~~Gi~v~Pd~~~N------------aGGvi 158 (217)
T cd05211 98 VDIFAPCALGNVIDLENAKK----L-KAKVVAEGANNPTT--DEALRILHERGIVVAPDIVAN------------AGGVI 158 (217)
T ss_pred ccEEeeccccCccChhhHhh----c-CccEEEeCCCCCCC--HHHHHHHHHCCcEEEChHHhc------------CCCeE
Confidence 89999998876333322232 3 24678877776533 367788899998776422211 11110
Q ss_pred -HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 153 -EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 153 -e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
..++..+. . ...+|- -.-+.+.+...+.....+.+..+++.+ +++.+...++
T Consensus 159 ~s~~E~~q~----~-------~~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 211 (217)
T cd05211 159 VSYFEWVQN----L-------QRLSWD--------AEEVRSKLEQVMTDIHNGVFAISERDG-VTMRAAANIL 211 (217)
T ss_pred eEHHHhcCC----c-------cccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 11111110 0 111111 123444555566777788888889888 8887766553
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00097 Score=68.73 Aligned_cols=117 Identities=10% Similarity=0.112 Sum_probs=78.3
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+...++.+.. .--+|.+|||++++.+++.+..... ..++..++++++++++ +|+|+.++++..
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~S~~ 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTADKT 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 579999999999888776654 2347999999999998887654321 1246778999999998 999999998643
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
. ..+++. ..+++|..|.-.++-.| +.+++-..+-.+.-.|+|.
T Consensus 206 ~-~Pvl~~--~~lkpG~hV~aIGs~~p-~~~Eld~~~l~~a~v~vD~ 248 (346)
T PRK07589 206 N-ATILTD--DMVEPGMHINAVGGDCP-GKTELHPDILRRARVFVEY 248 (346)
T ss_pred C-CceecH--HHcCCCcEEEecCCCCC-CcccCCHHHHhcCEEEECC
Confidence 1 112221 35678988877776554 3334332222222345663
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00063 Score=62.90 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=56.5
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.| |..+|.+|.++|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~i 100 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPGL 100 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCce
Confidence 68999999997 88899999999999999998742 22334444 9999999998642
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. .+ .++++.+|||.+...
T Consensus 101 i~---~~---~~~~~~viIDla~pr 119 (168)
T cd01080 101 VK---GD---MVKPGAVVIDVGINR 119 (168)
T ss_pred ec---HH---HccCCeEEEEccCCC
Confidence 11 22 356789999997654
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0025 Score=65.90 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=70.8
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.+|||||+|.+|.. .+..+... +.++. ++|+++++.. +... ....+++++++++. .+.|+|++++|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~ 74 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPN 74 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCc
Confidence 469999999999985 55666553 67765 7899987643 1110 24567899999874 247999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+.++.. +..|+ ++++- -.....+.+++.+..+++|+.+
T Consensus 75 ~~H~~~~~~a----l~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 75 DTHFPLAKAA----LEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 7554433333 34455 44442 1223455666666666666654
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0027 Score=64.20 Aligned_cols=124 Identities=11% Similarity=0.125 Sum_probs=87.6
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHh---CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAE---KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~---~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|++++.-++||+|+|.|+.-++++|.- .+|.|+ ++||+.++..++.+...-. +.+.+.|.+|++++ ...|+|
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvV 76 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVV 76 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEE
Confidence 566666789999999999999999863 467755 7799999988888764321 35778999999987 235999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeC-CCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
.+..|.+...+ ++--++.. ...++++- -.......+++.+.++.+|+.|++.
T Consensus 77 yi~~~~~qH~e-vv~l~l~~--~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 77 YISTPNPQHYE-VVMLALNK--GKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred EeCCCCccHHH-HHHHHHHc--CCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 99999976544 33222222 12355553 1234456777888888899887763
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00083 Score=66.72 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=65.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhc---ccC-CCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 9 IGLAGL-AVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAH---REG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 9 IgiIGl-G~mG~~lA~~La~~G----~~V~v~dr~~~~~~~~~~~~~---~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+|||+ |.||..++..|+..| .+|.++|+++++++....... ... ..+++.++++.+.+++ +|+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 789999999876544332110 000 0146666776676666 9999996
Q ss_pred cCCC---------------chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.-.+ +.++++.+.+.... +..++|..||-.
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 5221 12444445665555 666777776644
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00069 Score=59.02 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=59.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCC-c-EEEEeCChhHHHHHHHhhcc-cCCCCeeeeC-CHHHHHhhcCCCcEEEEecCC
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGF-P-ISVYNRTTSKVDETLDRAHR-EGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~-~-V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~-s~~e~v~~l~~advIil~vp~ 82 (505)
||+||| .|.+|..|.+.|+++-+ + +.++.++++.-..+...... .+...+...+ +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 89999999999998643 4 45667776222222221110 0000123333 44444 44 9999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 455555555 45788999999876
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=58.26 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|..||+| -|..+|..|++.|++|++.|.++..++.+.+.+... ..-..++..-++-++ +|+|...=|+. .+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~---a~liysirpp~-el 90 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKN---AKLIYSIRPPR-DL 90 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhc---CCEEEEeCCCH-HH
Confidence 579999999 999999999999999999999999988877654211 000112233355565 99999888885 56
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
..-+-+++......-+|...|+..|.
T Consensus 91 ~~~~~~la~~~~~~~~i~~l~~e~~~ 116 (134)
T PRK04148 91 QPFILELAKKINVPLIIKPLSGEEPI 116 (134)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence 66667788878777777777776543
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0029 Score=64.52 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=61.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccC-C-CCeee-eCCHHHHHhhcCCCcEEEEe
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREG-Q-LPLTG-HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g-~-~~i~~-~~s~~e~v~~l~~advIil~ 79 (505)
..+||+|||+|.+|.++|..|+..|. ++.++|++.++++.......... . .+... ..+.++ .++ +|+||++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~---adivIit 80 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD---ADLVVIT 80 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC---CCEEEEe
Confidence 34699999999999999999999998 79999999876543332111000 0 01222 344444 344 9999997
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.-.+. .++++++.+..+- +..+++..||
T Consensus 81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsN 123 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASN 123 (315)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 64321 1334445555544 4556666665
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0021 Score=68.72 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhh-cCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLS-IQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~-l~~advIil~vp~~~ 84 (505)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++++.+.+..... -+... .+...+.+. ++++|.|++++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 4799999999999999999999999999999999988876521100 01111 233323222 45699999999885
Q ss_pred hHHHHHHHHhhcc-CCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iiId~st 108 (505)
.....+......+ +...+|+...+
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3444443344433 44556665433
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00047 Score=72.83 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=55.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||+|-||..++.+|+..|. +++++||++++.+.+.+..... .....+++.+.+. .+|+||.|++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~---~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIK---KADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhc---cCCEEEECcCCCCe
Confidence 579999999999999999999996 6999999999988887653200 1222334444444 49999999988754
Q ss_pred H
Q 010652 86 V 86 (505)
Q Consensus 86 v 86 (505)
+
T Consensus 256 v 256 (414)
T PRK13940 256 I 256 (414)
T ss_pred e
Confidence 3
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=63.26 Aligned_cols=190 Identities=12% Similarity=0.127 Sum_probs=109.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+.+|+||.|..|.....+....++... +..|++++.+.+.+.- ...+.++....+..+++|.-+|+.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~- 78 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA- 78 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH-
Confidence 4679999999999997666666666655 3478888877654421 223333333322257788887774
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe---EEc-CCCCCChhhhhcCC-cccC--CCCHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL---YLG-MGVSGGEEGARHGP-SLMP--GGSFEAYNN 157 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~---~v~-~pvsgg~~~a~~G~-~i~~--gg~~e~~~~ 157 (505)
.+-.+... ..-.+|+++++||...-. .+.+.+...|.. +-. +-.+|.++....-+ .++. -+|+-.+..
T Consensus 79 ~~s~vaa~--~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai 153 (289)
T COG5495 79 LYSGVAAT--SLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAI 153 (289)
T ss_pred HHHHHHHh--cccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHH
Confidence 23333222 224589999999887543 334444444432 211 23566666655333 3332 467777888
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
++.+...+|.+ .+-+-+.-...| -...|--..-...++.|+..+.+..| .|.-+
T Consensus 154 ~q~la~emgg~------~f~V~~~~r~lY-Haaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 154 VQSLALEMGGE------PFCVREEARILY-HAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHHhCCC------ceeechhHHHHH-HHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 99999999954 333322111100 01111111124567789999999888 87443
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0031 Score=64.21 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=63.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc----CCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~----g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.+|.++|..|+..|. ++.++|+++++++......... ...++..+.+++++ ++ +|+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEEC
Confidence 4699999999999999999998886 6999999887653322111000 00034545677764 43 9999997
Q ss_pred cCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.-.. . .++++.+.+..+ .+..++|..||-
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccCh
Confidence 6321 1 133344555555 456677777753
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=65.47 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=75.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEec--CC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~v--p~ 82 (505)
..||.|||-|.+|.+-|+....-|-+|++.|+|.+++..+-..... ++ ...+++..+.+.++++|++|-+| |.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 3589999999999999999999999999999999998776554221 22 34566666666677799999776 44
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
.++-+-+.+++...+.+|.+|||..
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 4444556688888899999998863
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0018 Score=64.90 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=84.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+.+||+|+|.+|+.+|.++..-|-.|..||.-... +...+. +++ ..+++|+... +|+|-+-+|-.++.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~-------gvq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAF-------GVQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhc-------cce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 46999999999999999999999999999754321 122222 233 4588888887 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~ 123 (505)
+.++ ++....+++|-.||+++.+-.-|+..+.+.+.+
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 566777899999999999988899888887765
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.001 Score=68.66 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=60.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+||+|||+ |.+|..+++.|.++ ++++. +.++. +.-+.+.+..............+.++. ...++|+|++|+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCc
Confidence 479999996 99999999999987 67765 45643 222222211110000000112333332 12349999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
+ ...++...+. ..|..|||.|+.+--
T Consensus 79 ~-~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 79 G-VSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred H-HHHHHHHHHH---hCCCEEEECCcccCC
Confidence 6 4444544443 368999999987744
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.013 Score=50.93 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=74.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHH-HHhcCCCCCCCcchh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK-AYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~-~~~~~~~~~~ll~~~ 404 (505)
|+++-.|.++|-+.++.+...+|++.+-++. ++|.+++.++-+.| --.|+.++.... .+.+.+.. +
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------~ 67 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------P 67 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC------S
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC------c
Confidence 3567789999999999999999999998853 39999999999887 457888876544 23222211 2
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFD 442 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~ 442 (505)
.|. ++-...+++-++..|-+.|+|+|..+.+..+|.
T Consensus 68 ~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~ 103 (122)
T PF14833_consen 68 GFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQ 103 (122)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred cch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 222 234456778899999999999999999988775
|
... |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0031 Score=63.93 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=62.2
Q ss_pred EEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhccc----CCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 9 IGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~----g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||+|.+|.++|..|+..| .+++++|+++++++......... ....+..+.+.++ ++ .+|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~-l~---~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYAD-AA---DADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHH-hC---CCCEEEEcCCC
Confidence 689999999999999999999 68999999998765544321110 0002333344443 33 39999999864
Q ss_pred Cc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 83 GS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+. .++++.+.+..+. +..++|..||-
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 32 1344445555555 56667777653
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0028 Score=61.56 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=77.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr----------~~~~~~~~~~~~~~~g~~-~i~~~~s~~e~v~~l~~ 72 (505)
+.++|+|.|+|.+|+.++..|.+.|.+|+ +.|. +.+.+.+..+....-..+ ... .-+++++... +
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~-~~~~~~i~~~--~ 106 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAE-RITNEELLEL--D 106 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCce-ecCCccceee--c
Confidence 34689999999999999999999999988 6687 666665554432110000 001 1133444432 4
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+|+++-|.+.+....+.+..+. =.+|+...|... +.+..+.|.++|+.|+.
T Consensus 107 ~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~--t~~a~~~L~~rGi~~~P 157 (227)
T cd01076 107 CDILIPAALENQITADNADRIK-----AKIIVEAANGPT--TPEADEILHERGVLVVP 157 (227)
T ss_pred ccEEEecCccCccCHHHHhhce-----eeEEEeCCCCCC--CHHHHHHHHHCCCEEEC
Confidence 8999999887654444444432 467888888765 36777889999998875
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.003 Score=65.20 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC----------CCcEE-EEeCC----------hhHHHHHHHhhcccCCC-CeeeeCCH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK----------GFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTP 63 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~----------G~~V~-v~dr~----------~~~~~~~~~~~~~~g~~-~i~~~~s~ 63 (505)
..+|+|+|+|.||+.++..|.++ +.+|. ++|++ .++...+.+.......+ ......++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 46899999999999999999865 35544 66853 33333333221100000 01123478
Q ss_pred HHHHhhcCCCcEEEEecCCCchH-HHHHHHHhhccCCCCEEEeCCCCChh-hHHHHHHHHHHcCCeEE-cCCCCCCh
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGE 137 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~-~t~~~~~~l~~~gi~~v-~~pvsgg~ 137 (505)
+++++. ..+|+|+.++|+.... +...+-+...+..|.-||-.+..... ...++.+..+++|..|. .+.+.+|-
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 888764 2489999999874321 11223344556678877765432211 23445555556677654 45554443
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0018 Score=67.78 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--C-CcEEEEeCChhHHHHHHHhhccc-CCC-CeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--G-FPISVYNRTTSKVDETLDRAHRE-GQL-PLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G-~~V~v~dr~~~~~~~~~~~~~~~-g~~-~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+++|||+|.++......++.- . -+|.+|||++++.+++.+..... ++. .+..++++++++++ +|+|+.|++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 5799999999999999988763 2 37999999999998887654321 001 26778999999988 999999997
Q ss_pred CCch---HHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGSP---VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~---v~~vl~~l~~~l~~g~iiId~st 108 (505)
.... ...+++ ...+++|..|+-.+.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 6431 112221 134678887764433
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0032 Score=59.94 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=31.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT 38 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~ 38 (505)
..+|+|+|+|.||..+|.+|++.|+ +|+++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999999 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.002 Score=59.58 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=53.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|||+|||+ |..|..++.-..+.||+|+.+-||++|+..+....... .. ..+++.+.+.|.+-|+||.+.-.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q----~D-ifd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ----KD-IFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec----cc-ccChhhhHhhhcCCceEEEeccCC
Confidence 68999996 99999999999999999999999999976542111110 01 235555556666789999998554
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00063 Score=62.88 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=64.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--------------------eCCHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--------------------HYTPRD 65 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--------------------~~s~~e 65 (505)
..+|.|+|.|+.|..-+..+...|++|+++|.++++.+++...... .+.. ......
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY----FIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE----ESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc----eEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3689999999999999999999999999999999888776654332 1222 111112
Q ss_pred HHhhcCCCcEEEEec--CCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 66 FVLSIQRPRSVIILV--KAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 66 ~v~~l~~advIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+.++.+|+||.++ +....-.-+-++.+..+.++.+|+|.|-
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 333333489999744 3332222222667777889999999875
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=65.31 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=61.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCc--EEEEeCCh--hHHHHHH----HhhcccC-CCCeeeeCCHHHHHhhcCCCcEE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFP--ISVYNRTT--SKVDETL----DRAHREG-QLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~--V~v~dr~~--~~~~~~~----~~~~~~g-~~~i~~~~s~~e~v~~l~~advI 76 (505)
|||+|+|+ |.+|..++..|+..|+. |+++||++ ++++... +.....+ ..++....+.++ +.. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 58999998 99999999999999975 99999965 4332111 1000000 002344445544 444 9999
Q ss_pred EEecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCChhhH
Q 010652 77 IILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 77 il~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t 114 (505)
|+++..+. .++++.+.+.+..+ ..+||-.+|..+.-+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t 128 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMT 128 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHH
Confidence 99985321 13444455666554 445555555443333
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0047 Score=62.23 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHH-HHHHhhcccCCCCeee-eCCHHHHHhh--cCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTG-HYTPRDFVLS--IQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~-~~~~~~~~~g~~~i~~-~~s~~e~v~~--l~~advIil~ 79 (505)
+.||||||+|.+|..++..+.+. +.++. ++|+++++.. +..++. ++.. +.+.+++++. +++.|+|+.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 46899999999999988888764 55655 6799886432 222211 2333 4788998863 3458999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+|+. ...+....+ ++.|..+||.+...
T Consensus 78 T~a~-~H~e~a~~a---~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAG-AHVRHAAKL---REAGIRAIDLTPAA 104 (302)
T ss_pred CCHH-HHHHHHHHH---HHcCCeEEECCccc
Confidence 9885 333333333 45789999988765
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0054 Score=59.52 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=93.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHH-HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDE-TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~----~V~v~dr~~~~~~~-~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+|||||.|.|...++..+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 579999999999999999999986 45555442222222 2222 23444444777776 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCCcccCCC---CHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPSLMPGG---SFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~~i~~gg---~~e~~~~ 157 (505)
+ ..+..++.++.+.+..+++|+.+--+..-.+ +...+.. ..+++- +| -.+.....|.+++.-| ..+..+.
T Consensus 71 p-~~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~~-~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 P-QVIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLSP-PTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred c-hhHHHHhhcCccccccceEEEEEeecccHHH--HHHhcCC-CCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHH
Confidence 8 4788898888887888999998766653332 3333331 122222 12 1233444555444333 4455688
Q ss_pred HHHHHHHhhc
Q 010652 158 IRDILQKVAA 167 (505)
Q Consensus 158 v~~ll~~iga 167 (505)
++.++..+|-
T Consensus 145 ~~~ll~~vG~ 154 (267)
T KOG3124|consen 145 VEELLSAVGL 154 (267)
T ss_pred HHHHHHhcCc
Confidence 8899999983
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0029 Score=67.36 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=51.7
Q ss_pred CcEEEEcccHHHHHHHH--HHH----hCCCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLAL--NVA----EKGFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~--~La----~~G~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.||...+. .++ -.|.+|.++|+++++.+.... .... .+ ..++..+++..+.+++ +|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999999977665 554 235689999999988653221 1100 00 1246777887777776 999
Q ss_pred EEEecCCC
Q 010652 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||+++-.+
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99998775
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.008 Score=64.25 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eee-CCHHHHH-hhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGH-YTPRDFV-LSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~-~s~~e~v-~~l~~advIil~vp~ 82 (505)
+++|-|+|+|.+|..++..|.+.|++|++.|+++++.+++.+.+... .+ ... .+.+.+. ..++++|.|+++.++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~---~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNT---LVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC---eEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 46799999999999999999999999999999999988887653110 11 111 2333331 234579999988887
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
. ...-.+..++..+....+|+-..+... ...+...|+.++
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~~------~~~~~~~g~~~v 347 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPAY------VDLVEGLGIDIA 347 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcch------HHHHHhcCCCEE
Confidence 5 334334444455555666665544322 233455576655
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0027 Score=68.39 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=66.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc--------C--CCCeeeeCCHH-------HHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE--------G--QLPLTGHYTPR-------DFVLS 69 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~--------g--~~~i~~~~s~~-------e~v~~ 69 (505)
.++.|+|+|.+|...+..+...|..|+++|+++++.+.+...+... | .-+.....+.+ .+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999877766543220 0 00000000101 02333
Q ss_pred cCCCcEEEEec-----CCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 70 IQRPRSVIILV-----KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 70 l~~advIil~v-----p~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++|+||.++ |.+ +-+.++....+++|.+|||.+..
T Consensus 245 ~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred hCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeeeC
Confidence 45689998887 433 11335667778888888888763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0022 Score=66.33 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=61.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcc-cCCCCeee-eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHR-EGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~-~g~~~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|+|+ |.+|..+++.|.++ ++++. +++++...-+.+.+.... .+...... ..+.+++.++ +|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999987 66777 556554221212211110 00000111 1255566544 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
++ ...++...+. ..|..|||.|+.+-
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~fR 103 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADFR 103 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhhh
Confidence 97 4455544443 46899999998763
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0046 Score=57.21 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=52.8
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCCC
Q 010652 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 9 IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|.|+|. |.+|..++..|.+.|++|++.-|++++.+. ..+. .+.. ..+++.+.+.++++|.|+.+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~-----~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGV-----EIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTE-----EEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccc-----ccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 679995 999999999999999999999999998776 2211 1111 245666666677799999999754
|
... |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0037 Score=65.54 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cC-C--C----Ceeee--CCHHHHHhhcCC
Q 010652 7 SRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTSKVDETLDRAHR----EG-Q--L----PLTGH--YTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgiIGlG~mG~~l-A~~La~~G~~V~v~dr~~~~~~~~~~~~~~----~g-~--~----~i~~~--~s~~e~v~~l~~ 72 (505)
|||.++|+|.||+++ ...|.+.|++|++.|++++.++.+.+++.- .+ . . ++... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 589999999999865 788889999999999999999988877521 01 0 0 11122 133555555556
Q ss_pred CcEEEEecCCCchHHHHHHHHhhcc--------CCCCEEEeCCCCCh
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHM--------SPGDCIIDGGNEWY 111 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l--------~~g~iiId~st~~~ 111 (505)
+|+|.++|... ..+.+...|.+.| .++-+|+.|=|...
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ 126 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIR 126 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhh
Confidence 89999999764 4566665555544 23337888877653
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0056 Score=51.14 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=60.4
Q ss_pred chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhh
Q 010652 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~ 262 (505)
.++++|++.|++.+..+++++|...+|++.| +|..++.+.+. ... ... ...+...-.+++..+-. |
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~---~d~---ri~---~~~~~pg~g~GG~Clpk----D 68 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAAN---TDP---RIG---PHYLRPGPGFGGSCLPK----D 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHH---TST---TTT---SSS-S-SSS--SSCHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHc---cCc---ccc---cccCCCCCCCCCcchhh----h
Confidence 5789999999999999999999999999998 99999998873 211 000 11222222244444333 3
Q ss_pred hCCCccHHHHHHHHHHcCCCcchhHHHH
Q 010652 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 263 ~~~kgtg~~~~~~A~~~gvp~p~i~~A~ 290 (505)
.. .....+.++|.+.+++.+++
T Consensus 69 ~~------~L~~~~~~~g~~~~ll~~~~ 90 (96)
T PF00984_consen 69 PY------ALIYLAKELGYPPQLLEAVI 90 (96)
T ss_dssp HH------HHHHHHHHTTSHHHHHHHHH
T ss_pred HH------HHHHHHHHcCCCHHHHHHHH
Confidence 21 45678999999988777653
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0054 Score=59.56 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=68.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCC----hhHH-------HHHHHhhcccCCCCeeeeCCHHHHHhhcCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRT----TSKV-------DETLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~---V~v~dr~----~~~~-------~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
.+|.|+|+|.+|..+|..|.+.|.+ |+++||+ .++. ..+.+..... ....++.+.++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~-----~~~~~l~~~l~~--- 97 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE-----KTGGTLKEALKG--- 97 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC-----cccCCHHHHHhc---
Confidence 5899999999999999999999975 9999999 4443 2222221000 111356566665
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+|++|-+.|.+-...++++ .+.++.+|++.+|-.+ +...+...+.|..
T Consensus 98 ~dvlIgaT~~G~~~~~~l~----~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMIK----KMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCEEEeCCCCCCCCHHHHH----hhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999999986643333333 3446788889885432 2234444445554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0079 Score=60.29 Aligned_cols=93 Identities=10% Similarity=0.069 Sum_probs=63.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHH-HHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVD-ETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~~V~-v~dr~~~~~~-~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|||||+|.+|..++..+.+ .++++. ++|+++++.. ++.+.. ++ ..+.+.+++++. .+.|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 589999999999999888875 456765 6799887533 222221 22 345688888864 347889999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
... .+.. ...++.|..++|.+...
T Consensus 75 ~~H-~e~a---~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAH-ARHA---RLLAELGKIVIDLTPAA 98 (285)
T ss_pred HHH-HHHH---HHHHHcCCEEEECCccc
Confidence 643 2232 23355789999987654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0079 Score=62.06 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhh-cc-----------cCCCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRA-HR-----------EGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~-~~-----------~g~~~i~~~~s~~e~v~~l~ 71 (505)
|+||||+|+|.||+.++..+.++ +++|. ++|++++....+.... .. .++.++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 36899999999999999998864 56765 5677766555444321 00 000024455566666654
Q ss_pred CCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+|+|+.|.|... ..+... .++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 888888887753 333332 234456777776664
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0049 Score=50.26 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=47.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 35899999999999999999998 567888886 57777777665
Q ss_pred hHHHHHHHHhhccCCCCEEEeCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~s 107 (505)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 4432 2334456778888763
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0052 Score=65.36 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--------G--FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--------G--~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
+.+|||+|+|.||..++..|.++ | .+ +.++||++++.+.+. . . ....++++++++++ ...|
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~---~---~~~~~~d~~~ll~d-~~iD 74 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-L---P---GILLTTDPEELVND-PDID 74 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-C---c---ccceeCCHHHHhhC-CCCC
Confidence 46899999999999999888654 3 34 447799977643211 0 0 23567899999864 2369
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC-ChhhHHHHHHHHHHcCCeE-EcCCCCCC
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~t~~~~~~l~~~gi~~-v~~pvsgg 136 (505)
+|+.+++......+ -+...|..|.-|+..... ......++.+..+++|+.| +.+.+.||
T Consensus 75 vVve~tg~~~~~~~---~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 75 IVVELMGGIEPARE---LILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEEECCCCchHHHH---HHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 99999876433333 333556678777743321 1122344455555667754 34445444
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.011 Score=63.58 Aligned_cols=114 Identities=9% Similarity=0.030 Sum_probs=66.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-----HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-----KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-----~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v- 80 (505)
++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Spg 86 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTPS 86 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECCC
Confidence 5799999999999999999999999999998753 1233433321 12222222333344 89988863
Q ss_pred -CC-CchHHHHHH---------HHh-hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 81 -KA-GSPVDQTIA---------ALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~-~~~v~~vl~---------~l~-~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|. .+.+....+ +++ .......|-|.+|++...++.-+...+...|...
T Consensus 87 i~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 87 MRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred CCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 11 112222211 111 2222234556666666655555566677666543
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0046 Score=61.88 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=58.1
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|. +|.++|..|.+.|.+|+++++... ++++.+.+ +|+||.+++.+..
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5799999987 999999999999999999986421 34445555 9999999988643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cCH------HHcCCCcEEEEcCCCc
Confidence 322 2467899999998753
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.013 Score=60.67 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHH-HHHHHHHh--CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQ-NLALNVAE--KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~-~lA~~La~--~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.||||||+|.++. ..+..+.. .+++|. ++|+++++. ++.+... .+..+++.+++++. .+.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 5899999999775 33454533 357765 789997654 4333211 24567899999974 347999999999
Q ss_pred CchHHHHHHHHhhccCCC-CEEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPG-DCIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.++..+ ..| .++++- =.....+.+++.+..+++|+.+.
T Consensus 75 ~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 75 DSHFEYAKRAL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred hHHHHHHHHHH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 76554443333 334 455552 12234566777777777776543
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0016 Score=54.33 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=59.7
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-EKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..++.|+|+|..|..++.++. ..|+. +.++|.++++..+-. . ++....+.+++.+.+ ++|+.+++||+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-----~---gipV~~~~~~l~~~~-~i~iaii~VP~~ 73 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-----G---GIPVYGSMDELEEFI-EIDIAIITVPAE 73 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-----T---TEEEESSHHHHHHHC-TTSEEEEES-HH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-----C---CEEeeccHHHhhhhh-CCCEEEEEcCHH
Confidence 357999999999999986544 56877 457899998643211 1 467777999998877 599999999984
Q ss_pred chHHHHHHHHhh
Q 010652 84 SPVDQTIAALSE 95 (505)
Q Consensus 84 ~~v~~vl~~l~~ 95 (505)
.+.++++++..
T Consensus 74 -~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 -AAQEVADELVE 84 (96)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 67777777666
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0041 Score=62.11 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=58.9
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.. |.++|..|.+.|..|++++.. +.++++.++. +|+||.+++....
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 57999999777 999999999999999997532 1356666666 9999999997653
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.. ..+.+|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 332 5688999999998764
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0089 Score=64.65 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=39.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|.+|+++|+++++.+...+.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 58999999999999999999999999999999999887776554
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0065 Score=60.79 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=78.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|-++++++..|++.|. +|+++||+.++.+++.+.....+ .........++.. +..+|+||-++|.+-.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 569999999999999999999995 79999999999998886543221 0001112221111 0128999999998854
Q ss_pred HHH---HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~~---vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
-.. .+. ...+.++.++.|.--... .| ...+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPL-ET-PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCC-CC-HHHHHHHHcCCeEEC
Confidence 321 122 345778999999865443 33 455556777766554
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=59.67 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=61.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh----hcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~----~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+||+|||+|.+|.++|..|+..|. ++.++|+++++++..... ....+..++....+.++ +++ ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC---CCEEEECC
Confidence 599999999999999999998886 699999998765432211 10000012333345555 333 99999985
Q ss_pred CCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 81 KAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
-.+ . .++++.+.+..+ .+..++|..||-
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNP 156 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNP 156 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 321 1 123333455554 356677777753
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.067 Score=52.49 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=98.0
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc---CC
Q 010652 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG---MG 132 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~---~p 132 (505)
++...++-.|+++. +|++|+-+|-|...-.+++.+++++++|.+|.++.|.++.......+.+.++.+.... +.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56667777788877 9999999999987778889999999999999999999888777777666655444333 23
Q ss_pred CCCChhhhhcCCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 010652 133 VSGGEEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 133 vsgg~~~a~~G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
|-|.+ |..+..- .++|..+++-++.++.+ +..+.+-..-.+...-|. ..+.+...+.+.+=+....
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~------k~ay~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~t 272 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKAR------GNAFKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAVT 272 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 33333 4433322 38889999999999998 566665443333343443 2233334455555555555
Q ss_pred HhCCCC
Q 010652 211 HVGGLS 216 (505)
Q Consensus 211 ~~g~l~ 216 (505)
+..|.+
T Consensus 273 qIlgAP 278 (342)
T PRK00961 273 QILGAP 278 (342)
T ss_pred HHhcCc
Confidence 554333
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0084 Score=63.60 Aligned_cols=123 Identities=17% Similarity=0.038 Sum_probs=75.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec-
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~----~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v- 80 (505)
.+||.|+|+|.-|.+.++.|.+.|++|+++|.++... ..+...+. .+..-..+.+... .+|+|+.+=
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i-----~~~~g~~~~~~~~---~~d~vV~SPG 78 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGI-----EVELGSHDDEDLA---EFDLVVKSPG 78 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCc-----eeecCccchhccc---cCCEEEECCC
Confidence 5789999999999999999999999999999776551 11111111 0111111112333 389998853
Q ss_pred -CCC-chHHHHHH---------HHhhcc--CCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 81 -KAG-SPVDQTIA---------ALSEHM--SPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 81 -p~~-~~v~~vl~---------~l~~~l--~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
|.. ..++.... ++.... +..-+-|.+||+...+|.-+...+++.|....-++-.|.
T Consensus 79 i~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~ 147 (448)
T COG0771 79 IPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGT 147 (448)
T ss_pred CCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCc
Confidence 222 22333321 222222 233567778888887787778888888876555554444
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.017 Score=61.34 Aligned_cols=110 Identities=18% Similarity=0.107 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
.+|.|||+|.+|.++|+.|.+.|++|+++|++++......... . ....+.+.+..+ +|+||.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~--~-----~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIH--E-----RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHh--h-----hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 5799999999999999999999999999998876433211000 0 011233333344 888888764432
Q ss_pred -hHHHHHH---------HH-hhc--c-CCCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 85 -PVDQTIA---------AL-SEH--M-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 85 -~v~~vl~---------~l-~~~--l-~~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
.+++..+ .+ ... . ....|-|.+|++...++.-+...+...|.
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 1222221 11 111 1 22346677777776666666777776664
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.008 Score=64.37 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=73.4
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|+|||. |.+|..+.++|.+.|| +|+..|...+.+ . ++..+.+++|+-+. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i---------~---G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI---------L---GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc---------C---CccccCCHHHCCCC---CCEEEEec
Confidence 57999999 8899999999999999 465555543211 1 35677889888665 89999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChh-------hHHHHHHHHHHcCCeEEcC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-------NTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-------~t~~~~~~l~~~gi~~v~~ 131 (505)
|.. .+.++++++... ....+||- +....+ ..+++.+..++.|+++++.
T Consensus 73 p~~-~~~~~l~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 73 PAK-YVPQVVEECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred CHH-HHHHHHHHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 985 677888877664 23344443 222222 2244555666778887764
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.024 Score=60.68 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=47.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++....| ..+.......+.... +|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~---~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG-IELVLGEYPEEFLEG---VDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-CEEEeCCcchhHhhc---CCEEEECCC
Confidence 3689999999999999999999999999999985 33332222111110 122223333444444 899998763
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.01 Score=60.70 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=72.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--------CCcE-EEEeCChhH-------HHHHHHhhcccCCCCeeeeC--CHHHHHh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--------GFPI-SVYNRTTSK-------VDETLDRAHREGQLPLTGHY--TPRDFVL 68 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--------G~~V-~v~dr~~~~-------~~~~~~~~~~~g~~~i~~~~--s~~e~v~ 68 (505)
|+|+|+|+|.+|+.++..|.++ +++| .+.|++... ++++.+.... |.+...... +++++.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999874 3453 466876432 1222211110 000001112 5666654
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhh-HHHHHHHHHHcCCeE-EcCCCCCChh
Q 010652 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLY-LGMGVSGGEE 138 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-t~~~~~~l~~~gi~~-v~~pvsgg~~ 138 (505)
..+|++|.|.|....-......+.+.|..|.-||..+...... -.++.+..+++|.+| +.+.|.||.+
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVP 149 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccc
Confidence 2589999999754221223444556677888888766543321 223334444556654 4555655543
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=59.08 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=72.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh---hHHHHHHHhhcccC-CCCeeee--CCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT---SKVDETLDRAHREG-QLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~---~~~~~~~~~~~~~g-~~~i~~~--~s~~e~v~~l~~advIil~ 79 (505)
+++.|+|.|-.|++++..|++.|.+ |+++||++ ++.+++.+.....+ ...+..+ .+.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999997 99999997 66666554321110 0011111 1222332333448999999
Q ss_pred cCCCchH--HHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 80 VKAGSPV--DQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 80 vp~~~~v--~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+|.+-.- +.. +.. ...+.++.+++|.--... .| .+.+..+++|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPK-KT-KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCC-CC-HHHHHHHHCCCeee
Confidence 9876311 100 000 134677889999876543 33 44455566665443
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0073 Score=61.31 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=80.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeee-eCCHHHHHhhcCCCcEEEEec
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
+|+||+|+|. |.-|..|.+.|+.+.. +|..+..+..+=+.+.+...+. |...... ..+++++ ....+|+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEec
Confidence 3579999996 9999999999998854 6666654432212222221110 0000111 1233433 223489999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHH-HHHHc--CCeEEcCCCCCChh----hhhcCC-cccCCCCH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQK--GLLYLGMGVSGGEE----GARHGP-SLMPGGSF 152 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~-~l~~~--gi~~v~~pvsgg~~----~a~~G~-~i~~gg~~ 152 (505)
|++.. .+.+..+ +.+|..|||+|+.+--......+ ..... +-.+++--+-|-+| ..+... .-.+|+-+
T Consensus 79 Phg~s-~~~v~~l---~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCyp 154 (349)
T COG0002 79 PHGVS-AELVPEL---LEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYP 154 (349)
T ss_pred CchhH-HHHHHHH---HhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchH
Confidence 99843 3333333 34577799999976433223222 22211 11111222222222 122222 33577755
Q ss_pred -HHHHHHHHHHHH
Q 010652 153 -EAYNNIRDILQK 164 (505)
Q Consensus 153 -e~~~~v~~ll~~ 164 (505)
.+.-.+.|+++.
T Consensus 155 Ta~iLal~PL~~~ 167 (349)
T COG0002 155 TAAILALAPLVKA 167 (349)
T ss_pred HHHHHHHHHHHHc
Confidence 455567888775
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.019 Score=49.51 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHHHhC----CCcEE-EEeCChhHHH-HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 13 GLAVMGQNLALNVAEK----GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 13 GlG~mG~~lA~~La~~----G~~V~-v~dr~~~~~~-~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|.||+.++..|.++ +++|. ++||+ .... ....... +...+.+++++++.. .+|+||-|.+. +++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999987 56655 67988 2110 0111111 135678999999833 39999999544 455
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChh---hHHHHHHHHHHcCCeE
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYL---NTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~---~t~~~~~~l~~~gi~~ 128 (505)
.+. +.+.|..|.-||..+..... .-.++.+..++.|.+|
T Consensus 73 ~~~---~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 73 AEY---YEKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHH---HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHH---HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 444 44456688888888776555 2223333444456554
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.075 Score=52.24 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=97.5
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
++...++-.|+++. +|++|+-+|-|...-.+++.+++.+++|.+|.++.|.++....+..+.+.++.+....... +
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence 56677777788887 9999999999986678889999999999999999999887776776666655444443311 2
Q ss_pred ChhhhhcCC-cccCC-CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhC
Q 010652 136 GEEGARHGP-SLMPG-GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 136 g~~~a~~G~-~i~~g-g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.++.. |. .+.-| .++|..+++-++.++++ +..+.+-..-.+...-|. ..+.+...+.+.+=+....+..
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~------k~ay~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~Il 273 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKAR------GKAFKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKIL 273 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhC------CCeeecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 223333 33 33222 38899999999999998 556655433333333333 2233334445555555555554
Q ss_pred CCC
Q 010652 214 GLS 216 (505)
Q Consensus 214 ~l~ 216 (505)
|.+
T Consensus 274 gAP 276 (340)
T TIGR01723 274 GAP 276 (340)
T ss_pred cCc
Confidence 333
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=59.22 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=73.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|+|+|-.|++++..|++.|. +|+++||++++.+++.+..............+..+..+.+..+|+||-++|.+-.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~ 207 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMP 207 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCC
Confidence 469999999999999999999997 6999999999988887642110000001112222111112238999999987631
Q ss_pred HH-H-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 VD-Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~-~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
-. . -++ ...+.++.++.|.--.. ..| ...+..+++|...++
T Consensus 208 ~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 208 AHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEEEc
Confidence 10 0 011 12356778999986644 333 445555667765543
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.027 Score=53.70 Aligned_cols=124 Identities=13% Similarity=0.131 Sum_probs=69.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.++++ .+++-+...+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhc
Confidence 3689999999999999999999997 79999987533222222100 00000000011122222221 155555555442
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
-. .+ .+...+..-|+||++... +..-..+.+.+.+.++.|+.+.+.|
T Consensus 100 i~-~~---~~~~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VT-AE---NLELLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CC-HH---HHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 222334556899998755 3444445566677788888766543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.017 Score=58.79 Aligned_cols=70 Identities=9% Similarity=0.025 Sum_probs=45.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEec
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
||+|||+|.+|.++|..|+.+|. ++.++|+++++.+. +.....-.+..+.+. ..+.+++. .+|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~----~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCA----DADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhC----CCCEEEECC
Confidence 79999999999999999998886 69999998775432 222111000001222 34444433 399999977
Q ss_pred C
Q 010652 81 K 81 (505)
Q Consensus 81 p 81 (505)
-
T Consensus 77 G 77 (307)
T cd05290 77 G 77 (307)
T ss_pred C
Confidence 3
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.055 Score=55.74 Aligned_cols=128 Identities=16% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--------CCC--cEE-EEeCChhH-------HHHHHHhhcccCCC-Cee-----eeC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAE--------KGF--PIS-VYNRTTSK-------VDETLDRAHREGQL-PLT-----GHY 61 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~--------~G~--~V~-v~dr~~~~-------~~~~~~~~~~~g~~-~i~-----~~~ 61 (505)
..+|+|+|+|++|+.+++.|.+ .|. +|. +.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4689999999999999998877 464 433 45754221 12222211111000 010 012
Q ss_pred CHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChh-hHHHHHHHHHHcCCeEE-cCCCCCChh
Q 010652 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~t~~~~~~l~~~gi~~v-~~pvsgg~~ 138 (505)
+++++++.. .+|+||-+++. ....+.. ...+..|.-||..++.... .-.++.+..+++|..+. .+.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~-~~a~~~~---~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTND-KNAHEWH---LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCc-HHHHHHH---HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 677777532 38999988855 3444443 3445577778877664211 22234444445676654 455766654
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0049 Score=64.46 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=60.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC--CHHHHHhhcCCCcEEEEec
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~--s~~e~v~~l~~advIil~v 80 (505)
+++||+|+|+ |..|..|.+.|.++ +++|+.+.++...-+.+................ +.+++ + ++|+||+++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~---~~DvVf~Al 112 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-S---DVDAVFCCL 112 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-c---CCCEEEEcC
Confidence 4568999996 99999999999998 678888876543322211111000000011111 22222 3 499999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|.+ ...+++.. +..|..|||.|+.+
T Consensus 113 p~~-~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 113 PHG-TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred CHH-HHHHHHHH----HhCCCEEEEcCchh
Confidence 985 34444444 44689999999875
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=60.10 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhH--HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSK--VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||+|||+ |.+|.++|..|+..|. ++.++|++..+ ..++...... ..+..+....+..+.++.+|+||++.-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~---~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTP---AKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCc---ceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 58999999 9999999999998885 79999998111 1122211110 124432111111222334999999874
Q ss_pred CC----c-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 82 AG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+ . .++++.+.+.++ .+..++|..||-
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNP 119 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNP 119 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCc
Confidence 32 1 233444556555 467788888774
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.037 Score=59.73 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=67.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC--CHHHHHhhcCCCcEEEEe--cC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~--s~~e~v~~l~~advIil~--vp 81 (505)
.++|.|+|+|..|.++|+.|.++|++|+++|++.....++.... ++.... ...+.+.+ +|+||.+ +|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~ 85 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWR 85 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCC
Confidence 35799999999999999999999999999998876554432221 122221 22333344 8888875 34
Q ss_pred CCch-HHHHHH---------HHhhc------c-CC-CCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 82 AGSP-VDQTIA---------ALSEH------M-SP-GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~~~-v~~vl~---------~l~~~------l-~~-g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+ +...-+ ++.-. . .+ .-|-|.+|++...++.-+...+...|...
T Consensus 86 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 86 PDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred CCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 4332 222210 11101 1 12 24556666666666655666777666543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.022 Score=58.72 Aligned_cols=123 Identities=12% Similarity=0.160 Sum_probs=69.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc---cc-CCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH---RE-GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~---~~-g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..+|.|||+|.+|..+|.+|++.|+ +++++|++.-....+..+.. .+ + .+..-+...++.+..+ .+++-+..+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~-~g~~Ka~aa~~~l~~i-np~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAK-QKKPKAIAAKEHLRKI-NSEVEIVPV 101 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHcc-CCccHHHHHHHHHHHH-CCCcEEEEE
Confidence 3689999999999999999999998 79999988522222111100 00 0 0000011112222222 156666666
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.... ..+.++++ +..-|+|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 102 ~~~~-~~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 102 VTDV-TVEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred eccC-CHHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 5432 22233333 4456899999754 4443444555666788887665543
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.021 Score=53.08 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=63.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+|.|||+|.||..++.+|++.|.. ++++|.+.-....+..+.......+-.-.....+.++.+ .+++=+.+.+... .
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~-~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKI-D 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeec-C
Confidence 589999999999999999999984 999998862212221110000000000011111222221 1444444443321 1
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc-CCeEEcCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~-gi~~v~~pvs 134 (505)
.+ .+...+..-++||+++. .+..-..+.+.+.++ ++.|+.+...
T Consensus 79 ~~---~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 79 EN---NLEGLFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred hh---hHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 11 22233455689999844 344334455555555 7877765433
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0096 Score=60.60 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=59.8
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhH--HHHHHHhhcccCCCCeeeeC---CHHHHHhhcCCCcEEEEe
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSK--VDETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~~~---s~~e~v~~l~~advIil~ 79 (505)
||+|||+ |.+|.++|..|+..|+ ++.++|+++.. ..++.. .... .++..+. ++.+..+ .+|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~~--~~i~~~~~~~~~~~~~~---daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPTA--ASVKGFSGEEGLENALK---GADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCcC--ceEEEecCCCchHHHcC---CCCEEEEe
Confidence 6999999 9999999999998886 79999998721 111111 1100 1234321 2233344 49999998
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.-.+. .++++.+.+..+ .++.++|..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 74421 234444556555 4677788887743
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.016 Score=59.15 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=59.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcC-CCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ-RPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~-~advIil~vp~~~~ 85 (505)
.+|+|+|+|-+|..-.+.....|.+|+++||+++|.+.+.+.++.. ....+.++..+.++ ..|+|+.+++ ...
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997776666666668999999999999998888776542 22211122222221 2788888888 555
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++..++ .|.++-.++-.+..
T Consensus 242 ~~~~l~----~l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSLK----ALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHHH----HHhcCCEEEEECCC
Confidence 544443 34444444444443
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=59.18 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=59.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-|. +|.++|..|.++|..|+++++.. .++++.+.. +|+||.++..+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 5799999987 99999999999999999997542 255666666 9999999966544
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 5578999999998654
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.033 Score=60.43 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=68.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--CCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~~ 84 (505)
.+|.|+|+|..|.+.++.|.+.|++|+++|++++..+.+.+.+. .+.......+.+.. +|+||.+- |...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~-----~~~~~~~~~~~l~~---~D~VV~SpGi~~~~ 84 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGV-----ATVSTSDAVQQIAD---YALVVTSPGFRPTA 84 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCC-----EEEcCcchHhHhhc---CCEEEECCCCCCCC
Confidence 57999999999999999999999999999988776655443221 11111223333444 89888865 3322
Q ss_pred h-HHHHHH---------HHh-hcc-----C-C-CCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 85 P-VDQTIA---------ALS-EHM-----S-P-GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 85 ~-v~~vl~---------~l~-~~l-----~-~-g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+ +...-+ ++. ... . + .-|-|.+||+...++.-+...+...|..
T Consensus 85 p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~ 145 (488)
T PRK03369 85 PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR 145 (488)
T ss_pred HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc
Confidence 2 221111 121 111 1 2 2455667777766666666777776643
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.031 Score=56.12 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=80.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|.|. |.+|..+-.+|...|++ .++..+|.+ .++. .++..+.+++|+.+.. .+|+.++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v---------~G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV---------LGLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee---------cCeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 468999995 99999999999999999 777777762 1111 1467788999988742 269999999985
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.+.+++++....- -..+||-.+.-...+.+++.+..++.|+++++.-..|
T Consensus 75 -~v~~~l~e~~~~G-vk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~G 124 (286)
T TIGR01019 75 -FAADAIFEAIDAG-IELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPG 124 (286)
T ss_pred -HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCce
Confidence 6777777766532 2234443333322223566667778899999855443
|
ATP citrate lyases appear to form an outgroup. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.027 Score=56.77 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh---hHHHHHHHhhcccCCCCeeeeCCHHH---HHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT---SKVDETLDRAHREGQLPLTGHYTPRD---FVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~---~~~~~~~~~~~~~g~~~i~~~~s~~e---~v~~l~~advIil~ 79 (505)
.++.|+|+|-.+++++..|+..|. +|+++||++ ++.+++.+.........+. ..++++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 469999999999999999999997 799999995 4777666542111000112 223321 22233458999999
Q ss_pred cCCCch--HHH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 80 VKAGSP--VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 80 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+|.+-. .+. .... ...++++.++.|.--... .| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYNPH-MT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCCCc-cC-HHHHHHHHCCCeEEC
Confidence 987632 111 1100 123667889999865433 33 455556677765543
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.052 Score=51.76 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=52.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|-|||.|.||...+..|.+.|++|++++++.. .+.++.+.+ .+.... ...+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5899999999999999999999999999987653 334444332 122221 1111 1233489999888775
Q ss_pred hHHHHHHHHh
Q 010652 85 PVDQTIAALS 94 (505)
Q Consensus 85 ~v~~vl~~l~ 94 (505)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5666554443
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=59.63 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HH----HHHHhh-cccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VD----ETLDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~~~--~~----~~~~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.||+|||+ |.+|.++|..|+..|. ++.++|++++. ++ ++.... .... ++....+..+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~~i~~~~~~~~~d-- 78 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLA--EIVITDDPNVAFKD-- 78 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccC--ceEEecCcHHHhCC--
Confidence 58999999 9999999999998886 79999995432 21 222110 0000 12233333333343
Q ss_pred CCcEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 72 RPRSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 72 ~advIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
+|+||++.-.+ . .++++.+.+..+.++..++|..|| |-++.
T Consensus 79 -aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~ 134 (322)
T cd01338 79 -ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN--PCNTN 134 (322)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC--cHHHH
Confidence 99999986332 1 134444566666544667777765 44443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.021 Score=58.36 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChhHH--HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G--~~V~v~dr~~~~~--~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.|.||+|||+ |.+|..+|..|+..+ .++.++|++.... .++...... ..+...+++.+..+.++++|+||++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCCCCEEEEC
Confidence 4579999999 999999999999665 5899999943211 122211111 1233333332222333449999988
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
.-.+. .++++++.+.++ .+..+|+-.||....
T Consensus 84 aG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 84 AGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 74421 122223344443 455677777665433
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.021 Score=58.36 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~~--~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..||+|||+ |.+|..+|..|+..+. ++.++|+++..- .++...... ..+....+..+..+.++.+|+||++.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~---~~i~~~~~~~d~~~~l~~aDiVVitA 94 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTP---AQVRGFLGDDQLGDALKGADLVIIPA 94 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcC---ceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence 368999999 9999999999997765 799999987211 122211110 12332223322333344599999987
Q ss_pred CCC----ch-----------HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAG----SP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-.+ .. ++++.+.+..+- +..+|+..||-.
T Consensus 95 G~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPv 138 (323)
T PLN00106 95 GVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence 432 11 222233444433 566777766644
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=57.65 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=59.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChh--HH----HHHHHhh-cccCCCCeeeeCCHHHHHhhc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTS--KV----DETLDRA-HREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~~--~~----~~~~~~~-~~~g~~~i~~~~s~~e~v~~l 70 (505)
+.||+|||+ |.+|.++|..|...|. ++.++|++++ ++ .++.... .... +.....+..+.+++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~--~~~i~~~~y~~~~d- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA--GVVITDDPNVAFKD- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC--CcEEecChHHHhCC-
Confidence 458999998 9999999999988765 7999999643 22 1222111 0000 12333333333444
Q ss_pred CCCcEEEEecCC----Cc-----------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 71 QRPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 71 ~~advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+|+||++.-. +. .++++.+.+..+.++..++|-.||
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 9999987632 21 144444566665656677777775
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.048 Score=58.62 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=69.6
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEec-
Q 010652 5 ALSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~-lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~v- 80 (505)
..++|.|+|+|..|.+ +|+.|.++|++|+++|.++. ..+++.+.+ +... ....+.++ .+|+||.+-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~---~~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIK---DADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCC---CCCEEEECCC
Confidence 3467999999999999 89999999999999997654 233343322 2332 12223333 389888754
Q ss_pred -CCCc-hHHHHH---------HHHhhc-cC-CCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 81 -KAGS-PVDQTI---------AALSEH-MS-PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 -p~~~-~v~~vl---------~~l~~~-l~-~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
|... .++... -+++.. +. ...|-|.+||+...++.-+...++..|.
T Consensus 76 i~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 76 IPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 3322 233221 123222 22 2356777788887777767777877774
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.028 Score=54.72 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=71.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCe-eeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i-~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
..+|.|+|+|-.|..++.+|+..|. +++++|.+.-....+..+... ....+. ......++-+..+ .+++.+.+.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~ 105 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVG 105 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEec
Confidence 3689999999999999999999997 688998776544444322100 000000 0000111111211 27777777554
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
. ...+-+++ .+..-++|||+.-. +..-..+.+.+.+.++.++.+.+.|
T Consensus 106 ~-~~~~~~~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 106 R-LSEENIDE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred c-CCHHHHHH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 2 22222233 34566999998766 3333344455677788888766554
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.026 Score=59.42 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hhHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr~----------~~~~~~~~~~~~~~g~~-~i~~~~s~~e~v~~l~~ad 74 (505)
++|+|.|.|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..++...-..+ +... -+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 689999999999999999999999988 77877 55543333321100000 1111 234444432 489
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+++-|--.+....+.+ +.+ +=++|+...|... |.+..+.|.++|+.|+.
T Consensus 284 vliP~Al~~~I~~~na----~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 284 VLIPAALGGVINKENA----ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred EEeeccccccCCHhHH----HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 9887755443222222 333 3478888888764 56677889999998874
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0059 Score=54.15 Aligned_cols=123 Identities=16% Similarity=0.208 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|+|+|.+|..++.+|++.|. +++++|.+.=..+.+..+.. .....+..-+...++.+.++ .|++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeeccc
Confidence 589999999999999999999998 69999977532222211100 00000011112223333322 1444455555532
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
....++++. ..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 233334444 345899998765 4455567777888899999877654
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.046 Score=55.02 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=78.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+.||.|.|. |.+|..+..+|.+.||+ .+|=.+|.+ .++. .++..+.+++|+-+.. .+|+.++++|..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v---------~G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV---------LGLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE---------eCeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 468999996 99999999999999997 555444431 1111 1367788999887621 279999999985
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.+.+++++....- -...||-.+.-...+.+++.+...+.|+++++....|
T Consensus 77 -~v~~~l~e~~~~g-vk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G 126 (291)
T PRK05678 77 -FAADAILEAIDAG-IDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG 126 (291)
T ss_pred -HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence 6777777766532 2334444443333334466777778899999865443
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.024 Score=57.83 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=58.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh---CCCcEEEEeCChhHH---HHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAE---KGFPISVYNRTTSKV---DETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~---~G~~V~v~dr~~~~~---~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIi 77 (505)
|||+|||+ |.+|..++..|.. .+++++++|+++... -++.... .. ..+.. .+++.+.++ .+|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~-~~--~~i~~~~~~d~~~~l~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIP-TA--VKIKGFSGEDPTPALE---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCC-CC--ceEEEeCCCCHHHHcC---CCCEEE
Confidence 58999999 9999999988854 356899999986431 1222111 00 02332 234344444 499999
Q ss_pred EecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++.-... .++++++.+.++ .+..+|+..||-.
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9984321 233444555554 4667888777743
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.065 Score=57.35 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=71.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEEec-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~--~~~~~~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil~v- 80 (505)
-.|.|+|+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++... .+. +.+.+ +|+||.+-
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~-~~~~~---~d~vV~sp~ 77 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDC-ELLVQ---ASEIIISPG 77 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCCh-HHhcC---CCEEEECCC
Confidence 3599999999999999999999999999997653 2233433100 12221 233 33444 88887743
Q ss_pred -CCCch-HHHHHH---------HHhhc-cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 81 -KAGSP-VDQTIA---------ALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 81 -p~~~~-v~~vl~---------~l~~~-l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
|...+ +....+ +++.. +...-|-|-+|++...++.-+...|...|..+.-.+..|.
T Consensus 78 i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 78 LALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 33222 222211 23322 2333456667777766666667777777765544444433
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.048 Score=55.82 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=60.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHH----HHHHhhcccCCCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVD----ETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~----~~~~~~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
..||+|||+ |.+|.++|..|...|. ++.++|+++ ++++ ++........ .+.....+..+.+++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~-~~~~i~~~~~~~~~d-- 79 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL-AGVVATTDPEEAFKD-- 79 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc-CCcEEecChHHHhCC--
Confidence 358999998 9999999999998885 799999965 2222 2221110000 012232333333344
Q ss_pred CCcEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 72 RPRSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 72 ~advIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+|+||++.-.+ . .++++.+++.++.++..+++..||
T Consensus 80 -aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 80 -VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99999986332 1 244555666676654677777765
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.05 Score=55.41 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=75.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC--------CCc--EE-EEeCChhHHHHHHHhhcccCCCCeeeeCCH-----HHHHh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK--------GFP--IS-VYNRTTSKVDETLDRAHREGQLPLTGHYTP-----RDFVL 68 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~--------G~~--V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~-----~e~v~ 68 (505)
+..+|+|+|+|.+|+.+++.|.++ |.+ |. +.||+..+...+.-... ....+++ .+++.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 75 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA------EVWTTDGALSLGDEVLL 75 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch------hhheecccccccHhhhc
Confidence 356899999999999999999875 333 33 45776655431100000 1122333 44443
Q ss_pred hcCCCcEEEEecCC-CchHHHHHHHHhhccCCCCEEEeCCCCChhhH-HHHHHHHHHcCCe-EEcCCCCCChh
Q 010652 69 SIQRPRSVIILVKA-GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 69 ~l~~advIil~vp~-~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t-~~~~~~l~~~gi~-~v~~pvsgg~~ 138 (505)
. +..|+|+.+++. -...+. ++.+...++.|..||.......... .++.+..++.|.. +..+-|.||.+
T Consensus 76 ~-~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 76 D-EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred c-ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 3 346899998877 445565 6777888889998886544322111 1344444555654 46677777654
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.015 Score=58.38 Aligned_cols=74 Identities=12% Similarity=0.247 Sum_probs=55.8
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|++++..|.+.|.+|+++++... ++.+.+.. +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 5799999997 999999999999999999997321 23333344 9999999965443
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. . ..+.+|.+|+|.+...
T Consensus 216 v~---~---~~lk~gavViDvg~n~ 234 (283)
T PRK14192 216 IK---K---DWIKQGAVVVDAGFHP 234 (283)
T ss_pred CC---H---HHcCCCCEEEEEEEee
Confidence 22 1 3478999999987653
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.012 Score=59.52 Aligned_cols=75 Identities=33% Similarity=0.582 Sum_probs=59.2
Q ss_pred HHHHHHHHhccC-CcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcc
Q 010652 219 ELAEIFDEWNKG-ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 219 ~i~~~~~~~~~g-~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~ 297 (505)
++.++++.|+.+ .++|++++...+++.. +++ .+.++...||. ++++|+++.|.+.|+|+|++.++++.|+.+.
T Consensus 201 d~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~ 274 (299)
T PRK12490 201 DVEDVARLWRNGSVIRSWLLDLTVKALAE-DPK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQ 274 (299)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHhh-CCC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 577778889864 5899999998888764 322 24667777764 4667999999999999999999877888887
Q ss_pred cc
Q 010652 298 LK 299 (505)
Q Consensus 298 ~~ 299 (505)
.+
T Consensus 275 ~~ 276 (299)
T PRK12490 275 ED 276 (299)
T ss_pred cc
Confidence 66
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.014 Score=60.13 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=57.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPI---SVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V---~v~dr~~~~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp 81 (505)
++|+|+|. |..|..+.+.|.++||++ ....++.+.-+.+.-.+ . .+...+ +..++ + .+|+||+|+|
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g-~----~i~v~d~~~~~~-~---~vDvVf~A~g 72 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG-K----ELKVEDLTTFDF-S---GVDIALFSAG 72 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC-c----eeEEeeCCHHHH-c---CCCEEEECCC
Confidence 58999996 999999999999988864 55544432212221111 1 123222 22222 3 3999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.+ ...++...+. ..|..|||.|+.+
T Consensus 73 ~g-~s~~~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 73 GS-VSKKYAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred hH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 86 4455554443 4678999998754
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.078 Score=56.99 Aligned_cols=112 Identities=15% Similarity=0.049 Sum_probs=66.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.+ +.......+.+. .+|+||.+ +|...
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~---~~d~vv~sp~i~~~~ 79 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWS---GFAALVLSPGVPLTH 79 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHc---CCCEEEECCCCCccC
Confidence 5799999999999999999999999999998765444443322 222111112223 38988863 23221
Q ss_pred -----hHHHHHH---------HHhhcc------CCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 85 -----PVDQTIA---------ALSEHM------SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 -----~v~~vl~---------~l~~~l------~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.+....+ ++.... ...-|-|.+|++...++.-+...++..|...
T Consensus 80 ~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~ 143 (460)
T PRK01390 80 PKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDV 143 (460)
T ss_pred CcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCe
Confidence 2333221 111111 2234556666666666655666777766544
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.014 Score=54.11 Aligned_cols=84 Identities=17% Similarity=0.274 Sum_probs=59.0
Q ss_pred CCCcEEEEcccHHHHHHHHH-HH-hCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 5 ALSRIGLAGLAVMGQNLALN-VA-EKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~-La-~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+.++.+||.|++|++++.. +. ++|+++. +||.+++++-..... ..+.-.+++++.+++ .+.|+.++|||
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtVP 155 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTVP 155 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEcc
Confidence 45689999999999999843 44 6788765 789999875443321 124445677777764 14789999999
Q ss_pred CCchHHHHHHHHhhc
Q 010652 82 AGSPVDQTIAALSEH 96 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~ 96 (505)
.. ...++.+.|...
T Consensus 156 a~-~AQ~vad~Lv~a 169 (211)
T COG2344 156 AE-HAQEVADRLVKA 169 (211)
T ss_pred HH-HHHHHHHHHHHc
Confidence 95 567777766653
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.019 Score=52.53 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=51.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-+ .+|.+++..|.++|..|++++... .++++.++. +|+||.++..+..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 579999986 699999999999999999987553 245555665 9999999987643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 32 235789999999988764
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.042 Score=58.41 Aligned_cols=117 Identities=10% Similarity=0.018 Sum_probs=77.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEE-e----------CChhHHHHHHHhh--cccCCC----CeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVY-N----------RTTSKVDETLDRA--HREGQL----PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~-d----------r~~~~~~~~~~~~--~~~g~~----~i~~~~s~~e~v~ 68 (505)
-++|+|.|.|++|+.+|+.|.+.|.+|+.. | .+.+.+.+..+.. .-.+ + +.. ..+.+++..
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~-~~~~~~~~-~i~~~~i~~ 309 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISE-YAEEFGAE-YLEGGSPWS 309 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhh-hhhhcCCe-ecCCccccc
Confidence 368999999999999999999999998876 8 6666555444321 0000 0 011 123344433
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
. +||+++-|...+....+....+.. ..=++|+...|... |.+..+.|.++|+.++.
T Consensus 310 ~--d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 310 V--PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred c--CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 1 489999998876554555555542 13368888888764 66777888999998874
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.013 Score=59.44 Aligned_cols=92 Identities=35% Similarity=0.630 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHhccCC-cchhhHhhhhhhcccccccCCchh-HHHHHhhhCCCccHHHH
Q 010652 197 GDMQLISEAYDVLKH--VGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL-VDKILDKTGMKGTGKWT 272 (505)
Q Consensus 197 ~~~~~i~Ea~~l~~~--~g~l~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~-ld~i~~~~~~kgtg~~~ 272 (505)
+.++.++|++.++++ .| +|++++.++ |+.+. +.|++++.+.+++..++ .+. +..+.++ +++.+|+
T Consensus 182 ~~~~~~aEa~~l~~~~~~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~~----~~~~~~~~~kd---~~~~~~~ 250 (301)
T PRK09599 182 GMMQAYAEGFELLEASRFD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAEDP----KLDEISGYVED---SGEGRWT 250 (301)
T ss_pred HHHHHHHHHHHHHHHcCCC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcCC----CHHHHHHHHHh---hCcHHHH
Confidence 367889999999999 88 999988777 67764 69999999998885432 222 3344444 4456899
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHcccc
Q 010652 273 VQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 273 ~~~A~~~gvp~p~i~~A~~~r~~s~~~ 299 (505)
++.|.+.|+|+|++++++..|+.+...
T Consensus 251 ~~~A~~~~~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 251 VEEAIDLAVPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 999999999999999988888887654
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.025 Score=57.49 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=49.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+. .+.. ..+++.+.+.++++|+|+.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGA-----ELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCC-----EEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899999 5999999999999999999999999876544332221 1111 1244555555566999988754
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.018 Score=59.31 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=56.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEe
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPIS---VYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~~V~---v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~ 79 (505)
+|++|+|+|+ |..|.-|.+.|.+++|.+. .. .+.++..+....... .+... .+..++ + ++|++|++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~----~l~~~~~~~~~~-~---~vD~vFla 73 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGK----NLRVREVDSFDF-S---QVQLAFFA 73 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCc----ceEEeeCChHHh-c---CCCEEEEc
Confidence 3479999996 9999999999998877533 23 222222111111001 12221 122333 3 39999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+|.+ ....++..+. ..|..|||.|+.+
T Consensus 74 ~p~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 74 AGAA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred CCHH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 9975 4444444443 4688999999865
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.031 Score=47.43 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHH-HHHHHh
Q 010652 16 VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQ-TIAALS 94 (505)
Q Consensus 16 ~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~-vl~~l~ 94 (505)
.-+..++..|.+.|.+|.+||..-........... . ++..++++++.++. +|.||++++... .+. -.+.+.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~-~---~~~~~~~~~~~~~~---~D~vvl~t~h~~-f~~l~~~~~~ 88 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKL-E---GVEVCDDLEEALKG---ADAVVLATDHDE-FRELDWEEIA 88 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHH-H---CEEEESSHHHHHTT---ESEEEESS--GG-GGCCGHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCc-c---ceEEecCHHHHhcC---CCEEEEEecCHH-HhccCHHHHH
Confidence 34677899999999999999988665433221100 1 36788899998887 999999998864 443 346777
Q ss_pred hccCCCCEEEeCCCCC
Q 010652 95 EHMSPGDCIIDGGNEW 110 (505)
Q Consensus 95 ~~l~~g~iiId~st~~ 110 (505)
..+.++.+|+|+-+..
T Consensus 89 ~~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 89 KLMRKPPVIIDGRNIL 104 (106)
T ss_dssp HHSCSSEEEEESSSTS
T ss_pred HhcCCCCEEEECcccc
Confidence 7778899999987754
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.011 Score=56.89 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=51.8
Q ss_pred CcEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNV--AEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~L--a~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....+++++++. ..+|.+++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCch
Confidence 5799999999999999863 35688876 57998776432211 0 012223455666543 2489999999986
Q ss_pred chHHHHHHHHh
Q 010652 84 SPVDQTIAALS 94 (505)
Q Consensus 84 ~~v~~vl~~l~ 94 (505)
. ..++.+.+.
T Consensus 158 ~-~~~i~~~l~ 167 (213)
T PRK05472 158 A-AQEVADRLV 167 (213)
T ss_pred h-HHHHHHHHH
Confidence 4 445544443
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.087 Score=50.35 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=49.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|.|||.|.+|..-+..|.+.|.+|++++.+.. .+..+.+.+ ++... ....+ ++ .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 5899999999999999999999999999987654 344444432 23321 13233 33 48898888666
Q ss_pred CchHHHH
Q 010652 83 GSPVDQT 89 (505)
Q Consensus 83 ~~~v~~v 89 (505)
. .+..-
T Consensus 80 ~-~ln~~ 85 (205)
T TIGR01470 80 E-ELNRR 85 (205)
T ss_pred H-HHHHH
Confidence 4 34433
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.096 Score=52.88 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=79.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
++++.+|.++|.+..+.+.+++|++.+-++ .++|.+++.++.+.| -.+|..++.-...+.++ +. ++.
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGG-FASSRILEVHGERMIKR-TF-----NPG 229 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcC-cccCHHHHhhchhhhcC-CC-----CCC
Confidence 788999999999999999999999988764 349999999999877 46788777654433222 11 122
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
|. +.-...+++-++..|-+.|+|+|....+..+|+...
T Consensus 230 f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~ 267 (292)
T PRK15059 230 FK--IALHQKDLNLALQSAKALALNLPNTATCQELFNTCA 267 (292)
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 32 233456778999999999999999998888776543
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.1 Score=56.79 Aligned_cols=116 Identities=15% Similarity=0.057 Sum_probs=68.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~--~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
.+|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+... .+.......+.+.. +|+||.. +|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~---~~~~g~~~~~~~~~---~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDA---EFVGGPFDPALLDG---VDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCc---EEEeCCCchhHhcC---CCEEEECCCCCC
Confidence 5799999999999999999999999999997543 233443332100 12222223344444 8998886 444
Q ss_pred C-----chHHHHH-------------HHHhhcc-----CCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 83 G-----SPVDQTI-------------AALSEHM-----SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~-----~~v~~vl-------------~~l~~~l-----~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
. +.+...- ..+...+ .+..|-|-+||+...++.-+...|...|...
T Consensus 82 ~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 82 LEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred cccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 2 1221111 1122111 1234667777777767766677777776543
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.022 Score=58.55 Aligned_cols=111 Identities=16% Similarity=0.230 Sum_probs=72.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~-G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.++|.|+|+ |.||+.+++.|+.+ | .+|++++|++++...+..+.... . ..++++.... +|+|+.+...
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~-----~-i~~l~~~l~~---aDiVv~~ts~ 225 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG-----K-ILSLEEALPE---ADIVVWVASM 225 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc-----c-HHhHHHHHcc---CCEEEECCcC
Confidence 367999998 89999999999864 5 58999999998887776543210 1 1245555554 9999988765
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
...+ +++. ..+.++.++||.+- |.+..... .+.|+++++.++.
T Consensus 226 ~~~~--~I~~--~~l~~~~~viDiAv--PRDVd~~v---~~~~V~v~~gG~V 268 (340)
T PRK14982 226 PKGV--EIDP--ETLKKPCLMIDGGY--PKNLDTKV---QGPGIHVLKGGIV 268 (340)
T ss_pred CcCC--cCCH--HHhCCCeEEEEecC--CCCCCccc---CCCCEEEEeCCcc
Confidence 4321 1211 12368899999853 44443222 2367888776543
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.045 Score=56.43 Aligned_cols=124 Identities=13% Similarity=0.152 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCC--CeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQL--PLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~--~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..+|.+|++.|. +++++|.+.-....+..+.... ... +..-.....+.+..+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 4689999999999999999999998 8999998754333332211000 000 000011112222222 1556555554
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.... ... +.+.+..-|+|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~---~~~~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEE---LEELVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHH---HHHHHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 4321 222 22334566999999765 3444445566667788787665443
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.094 Score=56.64 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=65.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HH----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KV----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~~----~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v- 80 (505)
.+|.|||.|..|..+|..|++.|++|+++|+++. .. +.+.+.+. .+....... .. ..+|+||++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv-----~~~~~~~~~-~~---~~~D~Vv~s~G 87 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA-----TVRLGPGPT-LP---EDTDLVVTSPG 87 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC-----EEEECCCcc-cc---CCCCEEEECCC
Confidence 4799999999999999999999999999996653 22 22332221 122112222 22 2389999876
Q ss_pred --CCCchHHHHHH---------HHh-hccCC----CCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 81 --KAGSPVDQTIA---------ALS-EHMSP----GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 81 --p~~~~v~~vl~---------~l~-~~l~~----g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
|+...+...-+ +++ ..+.+ ..|-|-+|++...++.-+...+...|..
T Consensus 88 i~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~ 150 (480)
T PRK01438 88 WRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLR 150 (480)
T ss_pred cCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCC
Confidence 22222222111 222 22322 2366667777766666666777766554
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.049 Score=57.92 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=63.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-------CC--cEEEEeCChhHHHHHHHhhcccC---CCCeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-------GF--PISVYNRTTSKVDETLDRAHREG---QLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-------G~--~V~v~dr~~~~~~~~~~~~~~~g---~~~i~~~~s~~e~v~~l~~a 73 (505)
-||+|||+ |.+|..+|..|+.. |. ++.++|++.++++...-...... ..++....+..+..++ +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd---a 177 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD---A 177 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---C
Confidence 58999999 99999999999988 65 78899999987643321110000 0023433333333344 9
Q ss_pred cEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 74 RSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 74 dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
|+||++.-.+ . .++++.+.|.....+..+||..|| |-++.
T Consensus 178 DiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN--PvDv~ 232 (444)
T PLN00112 178 EWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN--PCNTN 232 (444)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC--cHHHH
Confidence 9999976332 1 134444555554456677777775 44443
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.12 Score=55.22 Aligned_cols=115 Identities=16% Similarity=0.091 Sum_probs=67.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~----~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v-- 80 (505)
++|.|+|.|.+|.+.|+.|++.|++|+++|++... .+.+.+.+. .+.......++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 57999999999999999999999999999987532 233333221 12212334443321 278887754
Q ss_pred CCCch-HHHHHH---------HHhhcc-CCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 81 KAGSP-VDQTIA---------ALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 p~~~~-v~~vl~---------~l~~~l-~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|.+.+ ++...+ ++...+ ....|-|.+|++...++.-+...|...|...
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 33222 222221 222222 3334666677777666666667777666433
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.03 Score=53.20 Aligned_cols=126 Identities=12% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-cc--CCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-RE--GQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~--g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..+.- .. ...+..-+....+.++++ .|++-+..++
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 4689999999999999999999997 49999877432222211100 00 000000011112222222 2666666664
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
... . +..+.....+.+-++||++... +.....+.+.+.++++.|+.+.+.|
T Consensus 98 ~~~-~-~~~~~~~~~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDS-L-SNDSNIEEYLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred ccc-c-cchhhHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 421 1 0111222233455899988543 5555566677788888888776544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.095 Score=55.79 Aligned_cols=119 Identities=20% Similarity=0.161 Sum_probs=70.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHH---HHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEec-
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDE---TLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~-~~~---~~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v- 80 (505)
+|.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+.. +|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~~---~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLNN---ADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999976542 211 22110 0 12222 23 333343 89888754
Q ss_pred -CCCch-HHHHH---------HHHh-hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 81 -KAGSP-VDQTI---------AALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 81 -p~~~~-v~~vl---------~~l~-~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
|.+.+ +.... -+++ ..+....|-|.+|++...++.-+...|...|..+.-.+-.|
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig 138 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIG 138 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccC
Confidence 33322 22221 1222 22333356666777777666666777887776554333333
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.16 Score=51.22 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=76.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.++|.+.++.+..++|++.+..+. ++|.+++.++|+.+ .-+|.+++.....+.+. +. ++.
T Consensus 166 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-d~-----~~~ 232 (296)
T PRK11559 166 GAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDR-NF-----KPG 232 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcC-CC-----CCC
Confidence 6788999999999999999999999998743 39999999999976 55677666543322221 11 112
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
|. +.-...+++-++..|-+.|+|.|.+.++...|+...
T Consensus 233 f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 270 (296)
T PRK11559 233 FR--IDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALK 270 (296)
T ss_pred cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 22 222345568888999999999999999998776543
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.054 Score=52.32 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=57.4
Q ss_pred CCccCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 1 M~~~~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|....++++-|.|. |.+|..++..|+++|++|++.+|++++.+++.+... +.-.. ..++..=
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~D 63 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR--------------STGVK---AAAYSID 63 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hCCCc---EEEEEcc
Confidence 55445567888885 999999999999999999999999877665543211 00000 2222223
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+...+...++.+.....+=+++|++...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 64 LSNPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 334444555566655544445677766543
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.032 Score=53.88 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=52.3
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEecCC
Q 010652 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~--~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~ 82 (505)
|.|+|. |..|+.++..|.+.+++|.+.-|++. ..+.+.+.+... +.. ..+.+.+.+.++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 789996 99999999999999999999988864 355555554321 111 33667777777889999999884
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.038 Score=55.22 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=57.5
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||-| .+|.++|..|.++|..|++++... .++++.++. +|+||.++..+..
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 579999998 999999999999999999985322 234455565 9999999987653
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 32 12467999999998754
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.034 Score=53.47 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|||+|.+|..+|.+|++.|.. ++++|.+.=....+..+.......+-.-.....+-++.+ .+++-+..++..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~- 105 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK- 105 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-
Confidence 35899999999999999999999985 999998842222221110000000000011111112211 145555555432
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc-CCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~-gi~~v~~ 131 (505)
.....+++ .+..-++|||++-. +.....+.+.+.+. ++.++.+
T Consensus 106 i~~~~~~~---~~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 106 IDEDNIEE---LFKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred cCHHHHHH---HHcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEe
Confidence 11122222 34456899998543 34444455666666 7777765
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.067 Score=48.86 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=50.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.+|...+..|.+.|++|++++. +..+++.+.. .+... ..+++ ..+..+|+|+.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp--~~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP--EICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC--ccCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 5799999999999999999999999999963 3344444321 11221 11111 1244589888887664 5
Q ss_pred HHHHHHHHh
Q 010652 86 VDQTIAALS 94 (505)
Q Consensus 86 v~~vl~~l~ 94 (505)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 666664444
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.035 Score=56.83 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=60.0
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHHH----Hhh-cccCCCCeeeeCCHHHHHhhcCC
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDETL----DRA-HREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~~~~----~~~-~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
||+|||+ |.+|..+|..|+..|. ++.++|+++ ++.+... ... ... .+.....+..+.+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~--~~~~i~~~~~~~~~~--- 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLL--KGVVITTDPEEAFKD--- 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhccccc--CCcEEecChHHHhCC---
Confidence 7999999 9999999999998663 599999987 5422111 110 000 012222344444554
Q ss_pred CcEEEEecCCC----ch-----------HHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 73 PRSVIILVKAG----SP-----------VDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 73 advIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
+|+||++.-.+ .. ++++..++.++..++.++|-.|| |-+..
T Consensus 77 aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~ 132 (323)
T cd00704 77 VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN--PANTN 132 (323)
T ss_pred CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC--cHHHH
Confidence 99999876332 11 44444566665445666666664 44443
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.036 Score=55.44 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=57.2
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-+. +|.++|..|.++|..|++++... .++++.... +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------------------DDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------------------CCHHHHHhh---CCEEEEccCCccc
Confidence 5799999987 99999999999999999998421 255666666 9999998866543
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 32 1257799999999875
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.13 Score=55.22 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=67.0
Q ss_pred cEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEec--CC
Q 010652 8 RIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 8 ~IgiIGlG~mG~~-lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~v--p~ 82 (505)
+|-|||.|..|.+ +|+.|.+.|++|+++|.++.. .+.+.+.+ +.... ...+.++ .+|+||.+- |.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~---~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLD---DADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCC---CCCEEEECCCCCC
Confidence 4789999999998 999999999999999976542 23333322 33322 1222333 389888753 33
Q ss_pred Cc-hHHHHH---------HHHh-hccC-CCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 83 GS-PVDQTI---------AALS-EHMS-PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 83 ~~-~v~~vl---------~~l~-~~l~-~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
+. .+.... -+++ ..+. ..-|-|.+|++...++.-+...+...|.
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 22 233221 1222 2222 2356677777777777667777877775
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.067 Score=53.42 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... ... .+++ . ...+|+||-++|.+-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~---~~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEW---RPDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccc---hhhc-c-cccCCEEEECCccccC
Confidence 369999999999999999999997 59999999999888775421 111 1111 1 1238999999987631
Q ss_pred --HHH---HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 --VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~---vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.+. -++ ...+.++.+++|.--... .| .+.+..+++|...++
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALPA-ET-PLIRYARARGKTVIT 237 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCCc-cC-HHHHHHHHCcCeEeC
Confidence 000 011 123677889999866543 33 445555677765543
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.071 Score=60.17 Aligned_cols=99 Identities=10% Similarity=0.129 Sum_probs=72.8
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChh-hh-------hcCC-c
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GA-------RHGP-S 145 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~-~a-------~~G~-~ 145 (505)
||+|+|.. .+.++++++.+.++++.+|.|.+++...-.....+.+......|++. |+.|.+. |. ..|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68899994 78899999999999999999999998666655555444323568884 8888763 22 2344 3
Q ss_pred c-cC--CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 146 L-MP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 146 i-~~--gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
+ .+ ..+.++++.++.+++.+| ..++.+.+.
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~G------a~~~~~~~~ 112 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAAR------ADVRAMSAE 112 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcC------CEEEECCHH
Confidence 3 33 346788999999999999 456777654
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.069 Score=47.82 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=52.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|+|- ...|.+++..|.+.|..|++++++. .++++.++. +|+|+.++.....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 46777774 6677777777777777777776432 256666666 9999999987643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++ ...+++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 23578999999988765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.038 Score=51.96 Aligned_cols=91 Identities=18% Similarity=0.096 Sum_probs=61.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCC----HHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYT----PRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s----~~e~v~~l~~advIil~vp 81 (505)
++|.|||- ..+|.+||..|.++|..|+++|.+.-.. +...+... . .-+...+ +.+.+++ +|+||.+++
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~-h-s~t~~~~~~~~l~~~~~~---ADIVIsAvG 135 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIR-H-EKHHVTDEEAMTLDCLSQ---SDVVITGVP 135 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccc-c-ccccccchhhHHHHHhhh---CCEEEEccC
Confidence 57999995 7899999999999999999998664322 11100000 0 0010013 5566665 999999998
Q ss_pred CCch-HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSP-VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~-v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.... +. ...+.+|.+|||.+...
T Consensus 136 ~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 136 SPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred CCCCccC------HHHcCCCcEEEEcCCCc
Confidence 8754 32 13467899999998764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.039 Score=56.99 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=57.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCc---EEEE--eCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEE
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGFP---ISVY--NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVI 77 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~~---V~v~--dr~~~~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIi 77 (505)
..++|+|+|. |..|.-|.+.|.+++|. +... .|+..+.-.. .+ . .+.... +.+++ +. +|+||
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~----~~~v~~~~~~~~-~~---~D~vf 74 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R----DYTVEELTEDSF-DG---VDIAL 74 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c----eeEEEeCCHHHH-cC---CCEEE
Confidence 4579999996 99999999999998884 3222 3443332211 11 1 122222 33333 44 99999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+++|.+ ...+....+. ..|..|||.|..+
T Consensus 75 ~a~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 75 FSAGGS-ISKKFGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred ECCCcH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 999997 4444444432 4688999998764
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.073 Score=50.54 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=69.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh----cccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA----HREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~----~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..+|.|+|+|.+|..++.+|+..|. +++++|.+.=....+..+. ..-| -.-+....+.++++ -|++-+.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG---~~Ka~a~~~~L~~l-Np~v~i~~~ 96 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLG---QNRAEASLERLRAL-NPRVKVSVD 96 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcC---chHHHHHHHHHHHH-CCCCEEEEE
Confidence 4689999999999999999999998 5899987643222221110 0000 00011222223322 266666665
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
+.. +.+...++ +..-++||++.. .+.....+.+.+.++++.|+.+.+.|
T Consensus 97 ~~~--~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 97 TDD--ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred ecC--ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 442 22212222 334588888754 34555556677778888888776654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.07 Score=54.04 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=57.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcccCCCCeeeeC--CHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~~g~~~i~~~~--s~~e~v~~l~~advIil 78 (505)
+||+|||+|.+|.++|..|...+. ++.++|++.++.+- +.......+ ....... +.++ ++.+|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~-~~~~i~~~~~y~~----~~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG-SDVKITGDGDYED----LKGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc-CceEEecCCChhh----hcCCCEEEE
Confidence 589999999999999999987765 79999999654322 211110000 0122222 2333 334999999
Q ss_pred ecCC----Cc-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 LVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.-. +. .++++.+++....+ +.+++-.||-
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNP 120 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNP 120 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCc
Confidence 8822 21 23344455666554 5566666553
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.23 Score=53.14 Aligned_cols=115 Identities=14% Similarity=0.031 Sum_probs=68.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEec-
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~v- 80 (505)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+.. . ++.. ....++.... +|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCC
Confidence 357999999999999999999999999999976543 33333210 0 1222 1222333334 89998864
Q ss_pred -CCC-chHHHHHH---------HHh-hccC---CCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 81 -KAG-SPVDQTIA---------ALS-EHMS---PGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~~-~~v~~vl~---------~l~-~~l~---~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|+. +.+....+ +++ ..+. ...|-|.+|++...++.-+...|...|...
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 139 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT 139 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence 322 22322221 222 2221 234666677777666666677777777653
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.048 Score=54.39 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=57.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-+ .+|.++|..|.++|..|+++.... .++++.++. +|+||.++..+..
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 579999987 999999999999999999885321 245566666 9999999977643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 23577999999998764
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.18 Score=52.98 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
..|-|+|.|.+|..++..|.+.|++|.+.|.+. .++..+.+.. -+....+-++..+ .+++|+.|+++.+++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 459999999999999999999999999998663 3333322211 1333334445554 3567999998888764
Q ss_pred hHHHHHHHHhhccCC-CCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 85 PVDQTIAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~-g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
.-..++.. +..+.+ ..+++-..+. +..+.+++.|...+=.|
T Consensus 315 ~Nl~ivL~-ar~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 315 DNAFVVLA-AKEMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHH-HHHhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 33333333 233444 4566655442 33455566677665444
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.052 Score=55.19 Aligned_cols=82 Identities=12% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+.+|+|||+ |..|..|.+.|.++.+ ++.....+..+ .+ .+.++..++ +|++|+|+|.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------~~---~~~~~~~~~---~DvvFlalp~ 60 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------DA---AARRELLNA---ADVAILCLPD 60 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------cc---cCchhhhcC---CCEEEECCCH
Confidence 3579999995 9999999999998874 33322222111 01 122333344 8999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ...+...++. ..|..|||.|..+
T Consensus 61 ~-~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 61 D-AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred H-HHHHHHHHHH---hCCCEEEECChhh
Confidence 6 4444544443 4688999999754
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.092 Score=50.43 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
.++|.|+|. |.+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 356889985 999999999999999999999999887665543
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.07 Score=55.29 Aligned_cols=98 Identities=10% Similarity=0.174 Sum_probs=60.3
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh-cc------cC-CCCeee-eCCHHHHHhhcCCC
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA-HR------EG-QLPLTG-HYTPRDFVLSIQRP 73 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~-~~------~g-~~~i~~-~~s~~e~v~~l~~a 73 (505)
|++||+|+| .|.+|..+.+.|.++.. ++.++.+++....+..... .. .+ ...+.. ..+++++ .+ +
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~ 77 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---V 77 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---C
Confidence 357999998 79999999999998765 7887766654332211100 00 00 001122 2244444 44 9
Q ss_pred cEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|+|+.++|.+ ....+.+.+. ..|..+||.|...
T Consensus 78 DvVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 78 DIVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred CEEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 9999999996 3444444433 3678899998754
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.31 Score=46.81 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=36.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~ 48 (505)
||+-|.|. |.+|..++..|++.|++|++.+|++++.+++.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 36888986 8999999999999999999999999887766543
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.16 Score=53.27 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=61.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-c----EE--EE--eCChhHHHHHHHhhcc---cCCCCeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF-P----IS--VY--NRTTSKVDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~-~----V~--v~--dr~~~~~~~~~~~~~~---~g~~~i~~~~s~~e~v~~l~~a 73 (505)
-||+|||+ |.+|.++|..|+..|. . |. ++ |++.++++...-.... .-..++....+..+..++ +
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kd---a 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFED---A 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCC---C
Confidence 58999999 9999999999998775 2 33 44 8888775433211100 000023333333333344 9
Q ss_pred cEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 74 RSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 74 dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
|+||++.-.+ . .++++...+.++..+..+||-.|| |-++.
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN--PvDv~ 176 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN--PCNTN 176 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC--cHHHH
Confidence 9999976332 1 134444566665556777777775 44443
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.097 Score=53.69 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=58.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-------CcEEEEeCChh--HHHH----HHHhh-cccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKG-------FPISVYNRTTS--KVDE----TLDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G-------~~V~v~dr~~~--~~~~----~~~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.||+|+|+ |.+|..++..|...+ .+|.++|+++. +.+. +.... ...+ ++....++.+.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~--~~~~~~~~~~~l~~-- 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK--SVVATTDPEEAFKD-- 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC--CceecCCHHHHhCC--
Confidence 58999999 999999999999854 58999999653 1211 11000 0000 12233454444444
Q ss_pred CCcEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 72 RPRSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 72 ~advIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+|+||++.-.. . .++++...+..+..++.++|-.||
T Consensus 79 -aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 79 -VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred -CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 99999876321 1 123444556666556677777776
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.069 Score=53.18 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=46.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee-eeCCHHHHHhhc------CC-CcEEEE
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSI------QR-PRSVII 78 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~-~~~s~~e~v~~l------~~-advIil 78 (505)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++... .+.. .+. -..+++.+.+.+ +. +|.|++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~----~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEK----HVKFDWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCc----cccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 4789986 999999999999999999999999875421 1110 011 123444443333 45 899988
Q ss_pred ecCC
Q 010652 79 LVKA 82 (505)
Q Consensus 79 ~vp~ 82 (505)
+.|.
T Consensus 74 ~~~~ 77 (285)
T TIGR03649 74 VAPP 77 (285)
T ss_pred eCCC
Confidence 8765
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.23 Score=52.95 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=66.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--C
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--K 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p 81 (505)
..+|.|+|+|..|.+.++.|++.|++|+++|..+.. .+.+ +.+. .+.......+.++. +|+||..- |
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~ 76 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENV-----ERHTGSLNDEWLLA---ADLIVASPGIA 76 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCC-----EEEeCCCCHHHhcC---CCEEEECCCCC
Confidence 357999999999999999999999999999975432 2233 2221 12222222333443 78766643 2
Q ss_pred CC-chHHHHHH---------HHhhcc-CCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 82 AG-SPVDQTIA---------ALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~-~~v~~vl~---------~l~~~l-~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.. +.+....+ ++...+ ....|-|-+|++...++.-+...|...|..+
T Consensus 77 ~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 77 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred CCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 21 22222221 233222 2234557777777767766677777766544
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.25 Score=48.77 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEe----------CChhHHHHHHHhhcccCC----C-----CeeeeCCHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYN----------RTTSKVDETLDRAHREGQ----L-----PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~-v~d----------r~~~~~~~~~~~~~~~g~----~-----~i~~~~s~~e~ 66 (505)
.+|.|-|.|++|+..|+.|.+.|.+|+ +.| .+.+.+..+.+.....+. + +.+. -+.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCCcch
Confidence 589999999999999999999999988 656 223333332211100000 0 0122 244555
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... .||+++-|--.+....+.++.|.. .+=++|+...|... |.+..+.|.++|+.++.
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvP 175 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAP 175 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 542 489988776554333333344432 13367888888764 33677889999998874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=56.42 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=71.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.++-|+|.|-+|++++..|++.|++|+++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+-.-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999998887654211 1122222222211 1267888777766311
Q ss_pred --HH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 --DQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 --~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+. -+. ...++++.+++|..-... .| .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPK-IT-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCC-cC-HHHHHHHHCCCeEe
Confidence 10 011 123667889999876543 33 34444566665444
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.18 Score=47.15 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=46.6
Q ss_pred cEEEEcccHHHHHHHH--HHHhC----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcEE
Q 010652 8 RIGLAGLAVMGQNLAL--NVAEK----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~--~La~~----G~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~advI 76 (505)
||+|||.|..-.+.-. .+... +-+|.++|+++++++.... ...+ .+ ..++..++|.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 7999999987766432 23322 3378999999998763321 1110 00 2367889999999987 9999
Q ss_pred EEecCCC
Q 010652 77 IILVKAG 83 (505)
Q Consensus 77 il~vp~~ 83 (505)
|..+-.+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9999665
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.21 Score=53.49 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
||.|||+|..|.+.|+.|+++|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999997753
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.095 Score=51.12 Aligned_cols=84 Identities=15% Similarity=0.301 Sum_probs=56.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~ 83 (505)
+++-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+..... . +++ +..-+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dl~~~ 68 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA----------------G---GKAIGVAMDVTNE 68 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc----------------C---ceEEEEECCCCCH
Confidence 45888886 99999999999999999999999998766655432100 0 222 22223344
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++++++++.....+-+++|++...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 69 DAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 45566666665555556788887654
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.19 Score=48.72 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=69.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|..|..+|.+|+..|. +++++|.+.=....+..+... ....+-.-+....+-++.+ .+++-+...+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 4689999999999999999999998 688998765332222211000 0000000011222222222 145555555543
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
- ..+ .+.+.+..-|+||++.-. +..-..+.+.+.+.++.++.+++.|
T Consensus 100 i-~~~---~~~~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 L-DAE---NAEELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred e-CHH---HHHHHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 111 222333456899988664 4444445566677788888877654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.07 Score=52.30 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=71.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|-+|..+|.+|++.|. +++++|.+.-....+..+.... ...+-.-+....+.+.++ .+++-+..++..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAK 102 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEecc
Confidence 3589999999999999999999997 6888988764433332211000 000000011122222222 266666666543
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
-. .+ .+...+..-|+|||++-.. .....+.+.+.+.++.|+.+.+.|
T Consensus 103 i~-~~---~~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LD-DA---ELAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CC-HH---HHHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 2233345678999987653 444445566677788888765544
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.19 Score=49.33 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=67.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-CcE-EEEeCChhHH-----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKG-FPI-SVYNRTTSKV-----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G-~~V-~v~dr~~~~~-----~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
++||+|+|+ |.||+.+.+.+.+.. +++ ..++|.+... .++...+ .+++...+++...... +|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEEE
Confidence 579999998 999999999999776 554 4678886532 1121111 1234555555544444 99998
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~ 124 (505)
=...+ +.+...++-. +..+..+|-++|+......+..+.+.++
T Consensus 75 DFT~P-~~~~~~l~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 75 DFTTP-EATLENLEFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred ECCCc-hhhHHHHHHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 76644 3444444333 3456667778888776666655555554
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.13 Score=49.46 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+..... +. . +++.+ .-+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~--------------~~--~---~~~~~~~~D~~~~ 66 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR--------------AA--G---GEARVLVFDVSDE 66 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHH--------------hc--C---CceEEEEccCCCH
Confidence 57999985 999999999999999999999999887655443211 00 0 22222 223333
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++++++++...+.+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 67 AAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 44566666665544455677776543
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.17 Score=49.73 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=55.2
Q ss_pred CCccCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 1 M~~~~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|.....+++-|.|. |.+|..+++.|+++|++|++.+|++++.+++.+... .. ...+..-
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D 60 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----------------ER---ARFIATD 60 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Ce---eEEEEec
Confidence 54333356777775 999999999999999999999999877665543210 00 1222223
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+...++.+++.+.....+=+++|++..
T Consensus 61 l~~~~~~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 61 ITDDAAIERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 33444555566665554444466666544
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.081 Score=52.99 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++.... .++++..++ +|+||.++..+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------------------QDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 57999995 7899999999999999999886331 356666666 9999999977643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 23577999999998764
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.14 Score=49.69 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=56.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~ 68 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPD 68 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHH
Confidence 356888886 99999999999999999999999987655544321100 000 122223334445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++.+++.+.....+=++||++...
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 69 SAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666555555788887664
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.08 Score=53.28 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=58.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++... +.++++..++ ||+||.++.-+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999998532 1356666666 9999999987643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 23577999999998765
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.24 Score=57.26 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=67.6
Q ss_pred CCcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEe--c
Q 010652 6 LSRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL--V 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~l-A~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~--v 80 (505)
+.+|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+. .+|+||.+ +
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~---~~d~vV~SpgI 73 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVP---EDAVVVYSSSI 73 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcC---CCCEEEECCCc
Confidence 3469999999999997 9999999999999997643 334443332 2222 12223333 38988874 2
Q ss_pred CCCc-hHHHHH---------HHHhhccCC--CCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 81 KAGS-PVDQTI---------AALSEHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 p~~~-~v~~vl---------~~l~~~l~~--g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
|... .+.... -+++..+.+ ..|-|.+||+...++.-+...|...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3322 222222 123222222 346677777777777666777777664
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.19 Score=53.44 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=74.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEE--------Ee---CChhHHHHHHHhhcccC--------CC-CeeeeCCHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISV--------YN---RTTSKVDETLDRAHREG--------QL-PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v--------~d---r~~~~~~~~~~~~~~~g--------~~-~i~~~~s~~e~ 66 (505)
.+|+|=|.|++|...|+.|.+.|.+|++ || .+.++++.+.+.....+ .+ +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999988 88 77776543332211110 00 11111 23344
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... +||+.+-|--.+....+.++.|... .=++|+...|. | .|.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 332 4888887765543333333444321 34688888888 4 555677888999998874
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.089 Score=52.58 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++... +.++++.+++ +|+||.++..+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 57999996 789999999999999999988532 1356666666 9999999987653
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.|...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 13477999999998765
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.15 Score=52.30 Aligned_cols=39 Identities=13% Similarity=0.368 Sum_probs=33.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDET 45 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~ 45 (505)
|+|.|.|. |.+|+.++..|+++ |++|.+.||+.++...+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 58999996 99999999999986 79999999987654443
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.17 Score=49.24 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=54.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|-|+|. |..|..++..|+++|++|.+.+|++++.+.+..... .. ...+-.-+.+...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------------DN---LYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------cc---eEEEEecCCCHHH
Confidence 46889985 999999999999999999999999887665543210 00 2223333344445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+.....+=+++|....
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555544566666554
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.01 E-value=1 Score=46.81 Aligned_cols=158 Identities=12% Similarity=0.107 Sum_probs=94.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCC---------------Ce---eeeCCHHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQL---------------PL---TGHYTPRDFV 67 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~---------------~i---~~~~s~~e~v 67 (505)
.+|-|+|.|..+..+|..+.+++. +|-+.+|...+-+++.+.....+.. .. ....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 579999999999999999998876 6999999887776665433221000 00 1123444544
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhh-ccCCCCEEEeCCCCChhhHHHHHHHHHHcC--CeEEc-------CCCCCCh
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLG-------MGVSGGE 137 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~t~~~~~~l~~~g--i~~v~-------~pvsgg~ 137 (505)
.. =|.+|+|||++ +-.+|+++|-+ .|..=+.||-.|... +...-+...+.+.| +.++. .-++.++
T Consensus 82 g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred cc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 44 79999999996 66778877654 233334555555544 23333444455443 22222 2233333
Q ss_pred hhh---hcCC--cccCCC---CHHHHHHHHHHHHHhhccc
Q 010652 138 EGA---RHGP--SLMPGG---SFEAYNNIRDILQKVAAQV 169 (505)
Q Consensus 138 ~~a---~~G~--~i~~gg---~~e~~~~v~~ll~~iga~~ 169 (505)
... ..|. .+++|. +....+++..+++.++.+.
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 221 1222 345552 4456778888998888553
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.033 Score=58.29 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=35.2
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|..++.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4444567899999999999999999999999999998864
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.069 Score=52.25 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=35.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
+++|.|+|. |.+|+.++..|+++||+|++..|++++.....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~ 58 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL 58 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc
Confidence 468999995 99999999999999999999999988765443
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.095 Score=52.39 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=58.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|++++... .++++..++ ||+||.++.-+..
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------------------QNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEeCCCcCc
Confidence 57999995 7899999999999999999987331 355666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 32 23577999999999764
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.12 Score=51.89 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=69.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..++.+|+..|. ++.++|.+.=....+..+... ....+-.-+...++.+.++. +++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4689999999999999999999997 688888775333333222100 00000011122233333221 44444444432
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC-hhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~-~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
- ..+-++++ +..-|+|||++... ......+.+.+...++.++.+.+.|
T Consensus 106 l-~~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 I-GKENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred c-CccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 1 11122333 33558999987654 2334445566677788888765544
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.19 Score=51.00 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=57.4
Q ss_pred EEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc---CCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc-
Q 010652 11 LAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE---GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS- 84 (505)
Q Consensus 11 iIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~---g~~~i~~~~s~~e~v~~l~~advIil~vp~~~- 84 (505)
|||+|.+|.++|..|+..+. ++.++|++.++++......... ...+.+...+..+..++ +|+||++.-.+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---aDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD---ADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC---CCEEEECCCCCCC
Confidence 69999999999999998886 6999999887644332211000 00022333232333333 999999764321
Q ss_pred --------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 --------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 --------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++.+.+..+ .+..++|..||-
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 144444566665 466677777753
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.089 Score=52.44 Aligned_cols=74 Identities=12% Similarity=0.249 Sum_probs=58.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.+++..|.++|..|++++.. +.++.+..++ +|+||.++.-+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------------TKNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 789999999999999999999743 1356666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 13477999999998654
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.089 Score=52.48 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=56.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||-+ ..|.++|..|...|..|++++++.. ++++.++. +|+||.+++-...
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 579999998 9999999999999999999986532 34445555 9999999975432
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. .+. +++|.+|||.+...
T Consensus 209 v~---~~~---vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---PDM---VKPGATVIDVGINQ 227 (279)
T ss_pred cC---HHH---cCCCcEEEEeeccc
Confidence 22 222 58999999998654
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.093 Score=52.42 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------------------TRNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999988532 1255666666 9999999988654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 13577999999998754
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.085 Score=54.06 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=57.3
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHH----HHHhhcccCCCCeeeeCCHHHHHhhcCCC
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDE----TLDRAHREGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~~~--~~~----~~~~~~~~g~~~i~~~~s~~e~v~~l~~a 73 (505)
+|+|||+ |.+|..+|..|+..|. ++.++|++++. .+. +....... ...+....+..+.+++ +
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~-~~~~~~~~~~~~~~~~---a 76 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPL-LDGVVPTHDPAVAFTD---V 76 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchh-cCceeccCChHHHhCC---C
Confidence 6999999 9999999999998654 59999996542 211 11100000 0012222233333343 9
Q ss_pred cEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhH
Q 010652 74 RSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 74 dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t 114 (505)
|+||++.-.+ . .++++.+.+.++..+..++|-.|| |-++
T Consensus 77 DiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN--PvDv 130 (324)
T TIGR01758 77 DVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN--PANT 130 (324)
T ss_pred CEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC--cHHH
Confidence 9999876332 1 133344555555445666766664 4444
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.24 Score=47.27 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=56.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++..+..+.... .. .+++..-+.+...
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 68 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGIDLVDPQA 68 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEeecCCHHH
Confidence 46888885 9999999999999999999999998765544322100 01 3344444555556
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++.....+-+.|++....
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 69 ARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHhCCcCEEEECCcc
Confidence 666666666555455677776543
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.36 Score=51.33 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=51.1
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~-----G~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.. ...+...|+.. +-+|.++|+++++.+.... .... .| ..++..+++.++++++ +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999884 33455555543 3579999999987654221 1100 01 1367888999999987 999
Q ss_pred EEEecCCC
Q 010652 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998665
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.31 Score=48.97 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.++|.+....+..++|++.+.++ +++|.+++.++.+.+ .-+|.+++.....+... +. ++.
T Consensus 163 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (291)
T TIGR01505 163 GDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TF-----KPG 229 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CC-----CCC
Confidence 677899999999999999999999999874 449999999999876 45777776653332221 11 122
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
|.- .-....++.+...|-+.|+|.|...++..+|....
T Consensus 230 f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 267 (291)
T TIGR01505 230 FRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTLR 267 (291)
T ss_pred cch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 222 23345678888999999999999999998776543
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.17 Score=48.95 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=54.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|+|. |.+|..++..|++.|++|.+.+|++++.+.+.+.... .-.. .+++..=+.+...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~ 70 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--------------AGGR---AHAIAADLADPAS 70 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 56888885 9999999999999999999999998876655432110 0000 2222223333344
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++.....+-+.||++...
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 71 VQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555566555544455677776544
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.28 Score=45.68 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=34.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
|++.|+|..-||..++..|++.|++|.+.+|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 46888987668888999999999999999999887665543
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.11 Score=53.73 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-eCChhHHHHHHHhhc------ccCC-CCeeee-CCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKG-FPISVY-NRTTSKVDETLDRAH------REGQ-LPLTGH-YTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G-~~V~v~-dr~~~~~~~~~~~~~------~~g~-~~i~~~-~s~~e~v~~l~~adv 75 (505)
+||+|+|+ |.||..+++.|.++. ++|... +++++.-+.+.+... ..+. ..+... .+++ ... ++|+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~Dv 76 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPV-ASK---DVDI 76 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHH-Hhc---cCCE
Confidence 47999995 999999999999877 577655 554332111111100 0000 011111 1222 223 4999
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|++++|.+ ....+...+. ..|..+||.|..+
T Consensus 77 Vf~a~p~~-~s~~~~~~~~---~~G~~VIDlsg~f 107 (341)
T TIGR00978 77 VFSALPSE-VAEEVEPKLA---EAGKPVFSNASNH 107 (341)
T ss_pred EEEeCCHH-HHHHHHHHHH---HCCCEEEECChhh
Confidence 99999997 3344444332 4688899998764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.17 Score=49.25 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=54.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+... +. . .+...+..=+.+...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~--------------~~--~-~~~~~~~~D~~~~~~ 73 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK--------------GQ--G-LSAHALAFDVTDHDA 73 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hc--C-ceEEEEEccCCCHHH
Confidence 46888885 999999999999999999999999877655443211 00 0 001222223344445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++...+.+=+++|++...
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665555555677776543
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.22 Score=48.56 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=53.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |.+|..+|+.|+++|++|.+.+|+.++.+++.+.... . ...+-.-+.+...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~ 66 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGP-----------------A---AIAVSLDVTRQDS 66 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCC-----------------c---eEEEEccCCCHHH
Confidence 45778875 9999999999999999999999998876665432100 0 1122222334445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+...+.+=+++|++..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555555567776544
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.19 Score=49.84 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=55.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~ 63 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFD 63 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHH
Confidence 346888885 999999999999999999999999887665543210 00 122333344444
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+...++++.....+=++||++...
T Consensus 64 ~~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 64 AIDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 5666666665554444677776543
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.25 Score=48.47 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=54.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |-+|..++..|+++|++|.+.+|++++.+++.+... .. ...+..-+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 45777775 889999999999999999999999887766543210 00 2223333344445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665555455677776553
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.1 Score=52.16 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=57.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++.+..+. +|+||.++.-+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 57999995 7899999999999999999986431 245555565 9999999988654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 ITA------DMVKEGAVVIDVGINH 233 (282)
T ss_pred CCH------HHcCCCcEEEEecccc
Confidence 321 3477999999998754
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.56 Score=51.51 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=50.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----cC-----CCCeee--eCCHHHHHhhcCCCc
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----EG-----QLPLTG--HYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~-----~g-----~~~i~~--~~s~~e~v~~l~~ad 74 (505)
.|.|.|. |.+|..++..|++.|++|.+++|+.++.+.+.+.... .| +..+.. ..+.+++.+.+.++|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 4778885 9999999999999999999999999887665432100 00 001111 224455555566799
Q ss_pred EEEEecCC
Q 010652 75 SVIILVKA 82 (505)
Q Consensus 75 vIil~vp~ 82 (505)
+||.++..
T Consensus 162 iVVn~AG~ 169 (576)
T PLN03209 162 VVICCIGA 169 (576)
T ss_pred EEEEcccc
Confidence 99988643
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=51.95 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++.... .++++.... ||+||.++.-+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 7899999999999999999887432 245666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.|...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LR------SDMVKEGVIVVDVGINR 232 (282)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 13477999999998764
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.075 Score=54.51 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~ 40 (505)
..+|-|||+|.||.-.+.+|.++|. +|++.||+..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3589999999999999999999996 5999999975
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.11 Score=52.27 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++++..++ ||+||.++.-+..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 7899999999999999999987431 256666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 13467899999998764
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.25 Score=52.70 Aligned_cols=74 Identities=9% Similarity=0.179 Sum_probs=50.3
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~-----G~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||.|.. +..+...|+.. +-+|+++|+++++.+.... .-.. .| ..++..+++.+|+++. +|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999885 22344445433 3579999999987654321 1100 01 1367888999999887 999
Q ss_pred EEEecCCC
Q 010652 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||..+-.+
T Consensus 78 Vi~~irvG 85 (437)
T cd05298 78 VFAQIRVG 85 (437)
T ss_pred EEEEeeeC
Confidence 99998665
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.26 Score=51.61 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=68.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|-.|..++.+|++.|. +++++|++.-....+..+... ....+..-.....+.+..+ .+++-+...+..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQER 213 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3689999999999999999999998 699999874322222211000 0000000011122222221 145544444432
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
- ....++.+ +..-++|||++-... .-..+.+.+.+.++.|+.+.+.|
T Consensus 214 ~-~~~~~~~~---~~~~D~Vv~~~d~~~-~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 V-TSDNVEAL---LQDVDVVVDGADNFP-TRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred C-ChHHHHHH---HhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEEecc
Confidence 1 11222333 345689999877643 32335566677788888876654
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.04 Score=57.68 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=33.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+.++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 346899999999999999999999999999999864
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.11 Score=51.87 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=57.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||- ..+|.++|..|.++|..|++++... .++++.++. +|+||.++..+..
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------------------~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------------------KNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecCCCCc
Confidence 57999995 8899999999999999999986321 255566666 9999999977643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 13467999999998654
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.33 Score=50.45 Aligned_cols=124 Identities=14% Similarity=0.224 Sum_probs=69.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-.|..++.+|+..|. +++++|.+.=....+..+-.. ....+-.-+....+-+.++ .+++-+...+..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~ 106 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRR 106 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEee
Confidence 3689999999999999999999998 688998875322222211000 0000000011122222221 266767666543
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
-..+ .....+..-|+|||++-.. ..-..+...+.+.++.|+.+.+.|
T Consensus 107 i~~~----~~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g 153 (355)
T PRK05597 107 LTWS----NALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILG 153 (355)
T ss_pred cCHH----HHHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 2111 2223344568999997653 232334455667788888766554
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.26 Score=53.11 Aligned_cols=116 Identities=12% Similarity=0.206 Sum_probs=75.5
Q ss_pred CcEEEEcc----------cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc--------c------cCC-CCeeeeC
Q 010652 7 SRIGLAGL----------AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH--------R------EGQ-LPLTGHY 61 (505)
Q Consensus 7 ~~IgiIGl----------G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~--------~------~g~-~~i~~~~ 61 (505)
.+|+|+|+ ..-...++..|.+.|.+|.+||.--+..+.....+. . .+. .++..+.
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 58999998 347788999999999999999986433211000000 0 000 0245667
Q ss_pred CHHHHHhhcCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 62 TPRDFVLSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
++.++++. +|+|++++..+ ..+.. ++.+.+.+.+..+|+|+-+.... +.+.+.|+.|++.+
T Consensus 405 ~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 405 DAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 77777776 99999999885 34432 35555556555689999988742 22334588887754
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.23 Score=49.31 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
+++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 346888887 99999999999999999999999988766554
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.44 Score=51.23 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=68.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--CCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~ 83 (505)
..+|+|+|+|.-|.+.++.|. +|.+|+++|.+++....+.+.... .... ....+.... +|+||.+- |..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~---~d~vV~SPgI~~~ 76 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK----NAIA-ALSDSRWQN---LDKIVLSPGIPLT 76 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC----ceec-cCChhHhhC---CCEEEECCCCCCC
Confidence 358999999999999999999 599999999664433222211000 1111 112233333 88887743 332
Q ss_pred ch-HHHHH---------HHHh-hccCC-CCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SP-VDQTI---------AALS-EHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~-v~~vl---------~~l~-~~l~~-g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.+ +.... -+++ ..... .-|-|.+|++...+|.-+...+...|....-.+..|
T Consensus 77 ~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 77 HEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred CHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 22 22221 1222 22222 246666777777666666777777776544333333
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.065 Score=55.31 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=55.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEecCC
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPIS---VYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~---v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~ 82 (505)
+|+||| .|..|..|.+.|.+++|++. ++.++...-+.+...+. .+... .+.+++ + .+|++|+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~---~~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-E---GIDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-c---CCCEEEECCCH
Confidence 689999 59999999999999988743 34343322111111111 12222 133333 3 39999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ...+....+. ..|..|||.|+.+
T Consensus 72 ~-~s~~~a~~~~---~~G~~VID~ss~~ 95 (339)
T TIGR01296 72 S-VSKEFAPKAA---KCGAIVIDNTSAF 95 (339)
T ss_pred H-HHHHHHHHHH---HCCCEEEECCHHH
Confidence 6 3444444443 4678999998753
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.17 Score=48.88 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=37.1
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
|...+.++|.|.| .|.+|..+++.|+++|++|++.+|++++...+.
T Consensus 1 ~~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~ 47 (251)
T PRK12826 1 TRDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATA 47 (251)
T ss_pred CCCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3333446798998 699999999999999999999999987655444
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.67 Score=46.07 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=58.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhc---CCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI---QRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l---~~advIil~vp~ 82 (505)
.+|.|+|.|.+|...+..+...|.+ |++.++++++.+.+.+.+... +....+..+.+..+ ...|+++-++..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 3699999999999999888889987 888899998877666544321 11111222222222 247888888765
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+..++. ....+.++-.++..+.
T Consensus 198 ~~~~~~----~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 198 TAAVRA----CLESLDVGGTAVLAGS 219 (280)
T ss_pred hHHHHH----HHHHhcCCCEEEEecc
Confidence 433333 3344555555555543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.12 Score=52.02 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.+||..|.++|..|++++.. +.++++.++. +|+||.++.-+..
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 789999999999999999999642 1356667776 9999999976532
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 23577999999998764
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.21 Score=51.17 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.5
Q ss_pred EEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHH
Q 010652 9 IGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLD 47 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~ 47 (505)
|||+|+|.+|+..++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 56655 56877776555543
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.23 Score=48.51 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=57.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+++|-|.| .|.+|..++..|+++|++|++.+|++++.+++.+.... .. . ...+-+-+.+..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---------~~------~---~~~~~~Dl~~~~ 63 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK---------AA------R---VSVYAADVRDAD 63 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc---------CC------e---eEEEEcCCCCHH
Confidence 35788887 69999999999999999999999998876655432100 00 1 233333344445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+++.++++.....+-+++|.+...
T Consensus 64 ~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 64 ALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 5666666666555545778876543
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.23 Score=48.21 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 46999998 99999999999999999999999988765543
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.28 Score=47.76 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=35.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
++|-|.|. |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888886 899999999999999999999999887766554
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.22 Score=49.37 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=58.7
Q ss_pred cCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 4 SALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 4 ~~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+++.+-|-|+ +-+|..+|+.|+++||+|.+..|+.++++++.++.... . . ++ ++++-+=+.+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~-----~---~----v~----v~vi~~DLs~ 67 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK-----T---G----VE----VEVIPADLSD 67 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh-----h---C----ce----EEEEECcCCC
Confidence 34456888896 89999999999999999999999999999887654321 0 0 01 3344333444
Q ss_pred CchHHHHHHHHhhccCCCCEEEeC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~ 106 (505)
.+.+..+.+++.....+=+++|+.
T Consensus 68 ~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 68 PEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEC
Confidence 456666666666543333566654
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.27 Score=48.83 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=56.7
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE-
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII- 78 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil- 78 (505)
|.....++|-|.| .|-+|..++..|+++|++|++.||+.+..++..+.... .. .++.++
T Consensus 1 m~~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~ 61 (287)
T PRK06194 1 MKDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVR 61 (287)
T ss_pred CcCCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEE
Confidence 4432335677887 49999999999999999999999998766554432110 01 233222
Q ss_pred -ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 -LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 -~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
=+.+...++.+++++.....+=++||++...
T Consensus 62 ~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 62 TDVSDAAQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2333345666666665555455777776654
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.38 Score=47.31 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=65.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
..++-|+|.|..+.+++......||+|+++|.+++........+. .......+++....+...+.|+++.-+. .
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h-~ 173 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDH-A 173 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCCh-H
Confidence 368999999999999999999999999999977652211110000 1123345666666554467777777554 3
Q ss_pred HH-HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 86 VD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 86 v~-~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
.| .++..+++..+..-+=+-+|. ....++.+.|.+.|+
T Consensus 174 ~D~~~L~~aL~~~~~~YIG~lGSr---~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 174 LDLELCHAALRRGDFAYFGLIGSK---TKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCH---HHHHHHHHHHHhcCC
Confidence 34 334555422222222222222 345555666666553
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.043 Score=57.81 Aligned_cols=33 Identities=27% Similarity=0.634 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.25 Score=48.43 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-----------CcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-----------FPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-----------~~V~v~dr~~ 39 (505)
..+|.|||+|-.|..++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 468999999999999999999874 2889998664
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.31 Score=46.88 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=57.7
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|.+...+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+++..... .. ..++-.-
T Consensus 1 ~~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D 60 (245)
T PRK12936 1 MFDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPAN 60 (245)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEcc
Confidence 4433345788888 5999999999999999999999999877665543210 00 2222222
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+...++.+++++.+.+.+=+.||++...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 61 LSDRDEVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344445666666666655555777777553
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.3 Score=47.80 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=55.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|++-|.|. |.+|..+|..|+++|++|.+.+|++++.++..++.... .. ...+..-+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---------------GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---------------CC---ceEEEcCCCCHHH
Confidence 47888885 88999999999999999999999988766554321100 00 1222233444455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++++++++...+.+=+++|....
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66667666665555567776543
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.23 Score=48.81 Aligned_cols=123 Identities=13% Similarity=0.150 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+... ....+-.-+....+.+.++ .+++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3689999999999999999999997 788998775333333221100 0000001111222222222 156666665543
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
-. ..- +...+..-++|||++-.. ..-..+.+.+.+.++.|+.+.+.
T Consensus 111 i~-~~~---~~~~~~~~DiVi~~~D~~-~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 111 LD-DDE---LAALIAGHDLVLDCTDNV-ATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred CC-HHH---HHHHHhcCCEEEecCCCH-HHHHHHHHHHHHhCCEEEEeeec
Confidence 11 112 222344568999987643 33333555666778888876544
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.12 Score=52.31 Aligned_cols=81 Identities=11% Similarity=0.286 Sum_probs=53.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.||+|+|. |.+|.-|.+.|+++.+ |-+...+.++. + . ..+.+++.++ +|++|+++|++ .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~--~------------~-~~~~~~~~~~---~D~vFlalp~~-~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRR--K------------D-AAERAKLLNA---ADVAILCLPDD-A 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccc--c------------C-cCCHhHhhcC---CCEEEECCCHH-H
Confidence 47999996 9999999999999853 33222221110 0 0 1244555555 89999999997 4
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
..+....+. ..|..|||.|+.+
T Consensus 62 s~~~~~~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChHH
Confidence 444444442 4688999999754
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.052 Score=56.83 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+...+.+|.|||.|..|..+|..|+++|++|.++|+.+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 5444456899999999999999999999999999998753
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.56 Score=49.84 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=49.6
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-----CCcEEEEeCC-hhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCc
Q 010652 7 SRIGLAGLAVMGQ-NLALNVAEK-----GFPISVYNRT-TSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgiIGlG~mG~-~lA~~La~~-----G~~V~v~dr~-~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
|||.|||.|..-. .+...|+.. +-+|.++|++ +++++.... .... .+ ...+..+++.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999998644 344555542 3579999999 787643221 1100 01 1357788899999887 99
Q ss_pred EEEEecCCC
Q 010652 75 SVIILVKAG 83 (505)
Q Consensus 75 vIil~vp~~ 83 (505)
+||+++-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999988544
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.32 Score=48.00 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=53.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|.|. |.+|..++..|++.|++|.+.+|++++.+++...+ .+.+..-+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------------------~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG-----------------------VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC-----------------------CeEEEeeCCCHHH
Confidence 56888885 99999999999999999999999988765443211 2233334444455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+......=+++|++..
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag 83 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAG 83 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666554444466776654
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.15 Score=50.99 Aligned_cols=74 Identities=11% Similarity=0.236 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++.|||- ..+|.+||..|.+ ++..|+++... +.++++..+. +|+||.++.-+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 57999995 7899999999998 68899988643 1356666676 99999999876
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
..+. ...+.+|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 5332 23578999999998764
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.45 Score=47.70 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=80.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHH-HHhcCCCCCCCcch
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK-AYQRNPNLASLVVD 403 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~-~~~~~~~~~~ll~~ 403 (505)
.+.++.+|+++|=+-.+.+++++|.+.+-+++ + +|.+.+.++-++| --+|+.++.-.. ..+++ .+
T Consensus 164 ~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~----G--ld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~-------~~ 229 (286)
T COG2084 164 VGAGQAAKLANNILLAGNIAALAEALALAEKA----G--LDPDVVLEVISGG-AAGSWILENYGPRMLEGD-------FS 229 (286)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHhcc-ccCChHHHhhcchhhcCC-------CC
Confidence 37899999999999999999999999998864 3 9999999999887 347888776322 22222 12
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
|-| .++-...+++-+...|.+.|+|+|..+.+.+.|+...
T Consensus 230 p~F--~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~ 269 (286)
T COG2084 230 PGF--AVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAA 269 (286)
T ss_pred cch--hHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 333 2334556778889999999999999999999777543
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.15 Score=50.96 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++... +.++++..++ ||+||.++.-+..
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------------T~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------------TADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 57999995 789999999999999999998533 1355666666 9999999977543
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 13477999999998764
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.25 Score=47.37 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=53.0
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|...++++|-|+| .|.+|..++..|+++|++|.+..++.+ ..+.+..... +.-.. ..++..
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~~~~~ 63 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVE--------------ALGRR---AQAVQA 63 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHH--------------hcCCc---eEEEEC
Confidence 5544456799998 499999999999999999887655544 3332222110 00000 223333
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
-+.+...++.+++++...+.+=+.||.+..
T Consensus 64 D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 64 DVTDKAALEAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 334444566666666554444567776554
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.31 Score=48.13 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4688888 5999999999999999999999999887666543210 01 2233333444445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++.+...+=++||++...
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666655544444677776543
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.32 Score=48.86 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=75.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCC-CCCcc--
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNL-ASLVV-- 402 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~-~~ll~-- 402 (505)
+.++.+|.++|.+.++.+..++|++.+.++ .++|..++.++.+.+. -+|+.++.... .+.. +..+.
T Consensus 160 g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~~~ 228 (288)
T TIGR01692 160 GAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNP----VPGVMPQAPASN 228 (288)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCC----CccccccccccC
Confidence 678899999999999999999999999874 3399999999999763 35655442211 0000 00000
Q ss_pred --hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 403 --DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 403 --~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
++.| .+.-...+++.+...|-+.|+|+|....+...|....
T Consensus 229 ~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 271 (288)
T TIGR01692 229 GYQGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFD 271 (288)
T ss_pred CCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 1223 2234456778999999999999999999888776433
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.15 Score=51.04 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|++++.. +.++++..++ +|+||.++.-+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 57999995 789999999999999999998632 1356666666 9999999977643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 32 13477999999998653
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.26 Score=47.83 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=57.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++...... .. .+...+..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~-~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK----------------AG-GKAIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh----------------cC-CcEEEEEcCCCCHHH
Confidence 4688898 59999999999999999999999998876665433210 00 002233334445555
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+.....+-++||++..
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666665555677777654
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.26 Score=49.82 Aligned_cols=123 Identities=16% Similarity=0.104 Sum_probs=81.5
Q ss_pred CCccCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC---CHHHHHhhcCCCcEE
Q 010652 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 M~~~~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~---s~~e~v~~l~~advI 76 (505)
|..++...+-|+|+ |..|.-+|..|++.|.+-.+-.||.++++.+....... ...-.+. ..++++. ..++|
T Consensus 1 ~~~e~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~--~~~~p~~~p~~~~~~~~---~~~VV 75 (382)
T COG3268 1 MPMEREYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPE--AAVFPLGVPAALEAMAS---RTQVV 75 (382)
T ss_pred CCCCcceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCcc--ccccCCCCHHHHHHHHh---cceEE
Confidence 44455567999996 99999999999999999989999999999888754321 1122223 3344444 48999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChh--hHHHH-HHHHHHcCCeEEc
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL--NTERR-IHEASQKGLLYLG 130 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~--~t~~~-~~~l~~~gi~~v~ 130 (505)
+.||-+-. ..-..-+...+..|.-.+|.+....- ...+. .+..++.|+..+.
T Consensus 76 lncvGPyt--~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~ 130 (382)
T COG3268 76 LNCVGPYT--RYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIP 130 (382)
T ss_pred Eecccccc--ccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEec
Confidence 99995532 21122233445678899999887532 23333 3344566777665
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.38 Score=46.40 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
++|-|.|. |.+|..++..|+++|++|++.+|++++.++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 56888885 99999999999999999999999977665544
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.14 Score=52.92 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=58.8
Q ss_pred CCccCCCcEEEEcc-cHHHHHHHHHHHh-CCCc---EEEEe--CChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCC
Q 010652 1 MEASALSRIGLAGL-AVMGQNLALNVAE-KGFP---ISVYN--RTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQR 72 (505)
Q Consensus 1 M~~~~~~~IgiIGl-G~mG~~lA~~La~-~G~~---V~v~d--r~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~ 72 (505)
|+.. .++|||||+ |.+|.-|.+.|.+ ..++ +..+. ++..+.-.+... .+.. ..+++++ .+
T Consensus 1 ~~~~-~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-------~l~v~~~~~~~~-~~--- 68 (347)
T PRK06728 1 MSEK-GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-------EIIIQEAKINSF-EG--- 68 (347)
T ss_pred CCCC-CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-------ceEEEeCCHHHh-cC---
Confidence 5433 368999997 9999999999995 6677 44443 222221111110 1222 1244444 44
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.|++|+++|.+ ...++...+. ..|..|||.|+.+
T Consensus 69 ~Divf~a~~~~-~s~~~~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 69 VDIAFFSAGGE-VSRQFVNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred CCEEEECCChH-HHHHHHHHHH---HCCCEEEECchhh
Confidence 89999999986 4555544433 4689999998765
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.37 Score=48.70 Aligned_cols=104 Identities=12% Similarity=0.078 Sum_probs=75.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHH-HHHHHhcCCCCCCCcchh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDR-IKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~-i~~~~~~~~~~~~ll~~~ 404 (505)
+.++-+|.+.|-+..+.+...+|++.+.++. ++|...+.++.+.+. ..+..+.. ....+.+++ . ++
T Consensus 165 G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~----~--~~ 231 (296)
T PRK15461 165 GMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGD----L--SP 231 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCC----C--CC
Confidence 6788999999999999999999999998853 399999999988763 33443332 211111111 1 23
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (505)
.| .++-...+++-+...|-+.|+|.|....+...|..-
T Consensus 232 ~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a 269 (296)
T PRK15461 232 AF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQA 269 (296)
T ss_pred Cc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 34 344556778999999999999999999998877643
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.51 Score=50.90 Aligned_cols=111 Identities=17% Similarity=0.085 Sum_probs=65.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-H---HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-K---VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~---~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v-- 80 (505)
.+|+|+|+|.-|.+.++.|.+.|.+|+++|.++. . ..++.+.+ .........+.+.. +|+||.+-
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~---~d~vV~SpgI 79 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAA------LLVETEASAQRLAA---FDVVVKSPGI 79 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcC------EEEeCCCChHHccC---CCEEEECCCC
Confidence 5799999999999999999999999999995432 1 12332211 01112222333444 89988754
Q ss_pred CCCch-HHHHHH---------HH-hhc-cC-----CCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 81 KAGSP-VDQTIA---------AL-SEH-MS-----PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 p~~~~-v~~vl~---------~l-~~~-l~-----~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
|...+ ++...+ ++ ... .. ...|-|.+|++...++.-+...|...|.
T Consensus 80 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 142 (468)
T PRK04690 80 SPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGH 142 (468)
T ss_pred CCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 33322 222211 22 111 21 2346667777777666666777776664
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.32 Score=50.43 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=59.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeC---CHHHHH-hhc--CCCcEEEEec
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY---TPRDFV-LSI--QRPRSVIILV 80 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~---s~~e~v-~~l--~~advIil~v 80 (505)
++.|+|+|.+|...+..+...|. +|++.|+++++++.+.+.+... ..... +..+.+ +.. ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999999888888885 6778899999988776633221 11111 111111 111 2478888888
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.... .+++....+.++-.++..+...
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEeccC
Confidence 7433 3444445555555555555443
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.57 Score=50.05 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=66.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhH--HHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEec-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSK--VDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~v- 80 (505)
++|.|||+|..|.+.+..|.+. |++|+++|..+.. .+++. .+. .+... .+++. +.+ +|+||.+-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~g~-----~~~~g~~~~~~-~~~---~d~vV~Spg 77 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-EDV-----ELHSGGWNLEW-LLE---ADLVVTNPG 77 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-cCC-----EEEeCCCChHH-hcc---CCEEEECCC
Confidence 5799999999999999999988 6899999976532 22332 221 12222 23333 344 89887754
Q ss_pred -CCCc-hHHHHHH---------HHhh-ccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 81 -KAGS-PVDQTIA---------ALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~~~-~v~~vl~---------~l~~-~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|... .+....+ +++. .+....|-|.+|++...++.-+...+...|...
T Consensus 78 I~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 137 (438)
T PRK04663 78 IALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE
Confidence 3322 2222221 3332 233334566667777666666667777766543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.21 Score=49.75 Aligned_cols=102 Identities=14% Similarity=0.222 Sum_probs=54.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhccc-C-CCCeee-eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHRE-G-QLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~-g-~~~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
.+|.|||.|.+-.........+ |..|..+|++++..+...+..... | ..++.+ +.+..++..+++..|+|+++.-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999999987765554444 456889999998765443211100 0 012333 3344444455666899999886
Q ss_pred CC---chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AG---SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~---~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+ .+=.++++.+...+++|..|+--+.
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 65 2346788999999999998887644
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.29 Score=47.64 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=34.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
+++-|.|. |-+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVA 48 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45777775 899999999999999999999999887766554
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.3 Score=50.19 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=56.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~ 83 (505)
+.|-|.|. |-+|..++..|++.|++|.+.+|++++.+++.+..... . +++ +..=+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~d~ 68 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL----------------G---AEVLVVPTDVTDA 68 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 45777786 89999999999999999999999998877655432100 0 222 23334455
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
++++.+++.+.....+=|++|++..
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 69 DQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 5677777666655444477777654
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.16 Score=52.20 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=58.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+..
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 789999999999999999998532 1356666666 9999999977654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 32 13477999999998654
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.34 Score=47.25 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++-|+|. |.+|..++..|+++|++|.+.+|+++..+++.+.... . . ..++..=+.+..
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-----------~---~~~~~~D~~~~~ 71 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----A-----------K---VTATVADVADPA 71 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----C-----------c---eEEEEccCCCHH
Confidence 357899985 9999999999999999999999998766554432110 0 0 122222223334
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.++.+++++.+.+.+-+.||++....
T Consensus 72 ~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 72 QVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 45556666655555557777765543
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.39 Score=47.37 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=53.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |-+|..++..|++.|++|++.+|++++.+.+...+ .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------------~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG-----------------------FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-----------------------CeEEEeeCCCHHH
Confidence 35777775 99999999999999999999999987655443211 2222233344455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++.+.....+=+++|++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444777776653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.41 Score=46.72 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
+++-|+| .|.+|..++..|+++|++|.+.+|++++.+++..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4688888 4999999999999999999999999988776654
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.17 Score=51.81 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=57.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++.... .++++..+. +|+||.++.-+..
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------------------KDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 7899999999999999999886321 245666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 32 23477999999998764
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.069 Score=56.13 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|...+..+|.|||.|..|..+|..|+++|++|+++|+++.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4444557899999999999999999999999999998753
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.29 Score=50.16 Aligned_cols=189 Identities=12% Similarity=0.062 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc----c---cCCC----------CeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH----R---EGQL----------PLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 17 mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~----~---~g~~----------~i~~~~s~~e~v~~l~~advIil~ 79 (505)
||..||..+..+|++|+..|.+..-++....+.. . .+.. +++...+..++ +.+|+++.+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~----~~~dmviea 76 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGF----ANADMVIEA 76 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccc----cccceeccc
Confidence 8999999999999999999999765432211110 0 0000 12223333333 348999888
Q ss_pred cCCCchHH-HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--CCeEEcCCCCCChhhhhcCCcccCCCCHHHHH
Q 010652 80 VKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYN 156 (505)
Q Consensus 80 vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~ 156 (505)
|-.+-.++ +++.+|....++..++-..+|+.+.+...-.-...++ |.||.... ......--..-..++..+..
T Consensus 77 v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa----~~m~LlEii~~~~tS~~~iA 152 (380)
T KOG1683|consen 77 VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPA----HWMQLLEIILALYTSKLTIA 152 (380)
T ss_pred hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHH----HHHHHHHHHHhcCCCchHHH
Confidence 77665544 4446666655555555444444433322211111222 33333210 00000000000122333222
Q ss_pred HHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 010652 157 NIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWN 228 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~ 228 (505)
.+-..=..++ +.+..+|. ..|.++....+ -..+++..++...| .++.+++.+...+.
T Consensus 153 ~Ain~~~~~g------k~~vvVg~-c~gf~v~r~l~-------~y~~~~~~~l~e~g-~~p~~iD~~~t~fG 209 (380)
T KOG1683|consen 153 TAINGGSPAG------KLPVVVGN-CCGFRVNRLLP-------PYTIGLNELLLEIG-ADPWLIDSLITKFG 209 (380)
T ss_pred HHHhcccccC------CccEEecc-CCceEEEeccc-------HHHHHHHHHHHHcC-CCHHHHHHHHHhcC
Confidence 2222212222 43445555 44555433221 23367777788888 99999999876543
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.39 Score=47.63 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=31.2
Q ss_pred CCccCCCc-EEEEccc---HHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 1 MEASALSR-IGLAGLA---VMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 M~~~~~~~-IgiIGlG---~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+..++.| +-|.|.+ -+|..+|+.|++.|++|.+.+|+.+
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~ 44 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEA 44 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchH
Confidence 55444445 5555876 6999999999999999999998754
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.23 Score=48.79 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=69.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEE--------eCChhHHHHHHHhhcccCC----CC------eeeeCCHH-HH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVY--------NRTTSKVDETLDRAHREGQ----LP------LTGHYTPR-DF 66 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~--------dr~~~~~~~~~~~~~~~g~----~~------i~~~~s~~-e~ 66 (505)
-+++.|-|.|.+|..+|+.|.+.|.+|.+. |.+.-.++++.+.....+. +. .... +.+ ++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~i 110 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PNDDEI 110 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHHCHG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-cccccc
Confidence 368999999999999999999999887654 5554445555442111110 00 1111 222 45
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCC-CCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~-g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... +||+++-|--.+....+.+.. .+++ =++|+...|.... .+..+.|.++|+.++.
T Consensus 111 l~~--~~DiliP~A~~~~I~~~~~~~---~i~~~akiIvegAN~p~t--~~a~~~L~~rGI~viP 168 (244)
T PF00208_consen 111 LSV--DCDILIPCALGNVINEDNAPS---LIKSGAKIIVEGANGPLT--PEADEILRERGILVIP 168 (244)
T ss_dssp GTS--SSSEEEEESSSTSBSCHHHCH---CHHTT-SEEEESSSSSBS--HHHHHHHHHTT-EEE-
T ss_pred ccc--cccEEEEcCCCCeeCHHHHHH---HHhccCcEEEeCcchhcc--HHHHHHHHHCCCEEEc
Confidence 432 499999986554333333331 2222 3688888887653 3334489999998774
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.45 Score=46.02 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=35.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~ 48 (505)
.++-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 3577777 59999999999999999999999999887766543
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.26 Score=49.81 Aligned_cols=107 Identities=15% Similarity=0.051 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.++++++ +|+|+..+|...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 579999998888999999999999999876543211 111 25667788887776 999999988631
Q ss_pred -hHHHH-------H-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 -PVDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 -~v~~v-------l-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
.++.. + ++++..+++|.+++ .+...+.. .+.+.++|+..++.
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~ 120 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVEL 120 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEE
Confidence 11111 1 45677788998555 45555542 24456889988764
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.33 Score=54.64 Aligned_cols=125 Identities=16% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|+|+|-+|+.++.+|+..|. +++++|.+.=....+..+.. .....+-.-+.-.++.+.++ .+++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecC
Confidence 3689999999999999999999997 67888866433222222110 00000000011122222222 156666666654
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhH-HHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t-~~~~~~l~~~gi~~v~~pvsg 135 (505)
-. .+-++.+ +..-|+|||+......++ ..+.+.+..+++.++.+++.|
T Consensus 122 i~-~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 IN-ADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CC-hHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 22 2223333 345689999987643333 345556677888888776544
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.1 Score=53.62 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=56.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEe--CChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGF---PISVYN--RTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~---~V~v~d--r~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
..++|+|||+ |..|..|.+.|.++.| ++.... ++..+.-.+. +. .+... +++++. ++++|++|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~--~~-----~~~v~-~~~~~~--~~~~Dvvf~ 72 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFG--GK-----SVTVQ-DAAEFD--WSQAQLAFF 72 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEEC--Cc-----ceEEE-eCchhh--ccCCCEEEE
Confidence 4578999996 9999999999999654 444442 2222211111 10 12222 444432 123899999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++|.+ ...++...+. ..|..|||.|..+
T Consensus 73 a~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 73 VAGRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CCCHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 99986 3444444443 4689999998754
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.3 Score=47.51 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=55.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|+| .|.+|..++..|+++|++|.+.+|++++.+++....... ... ...+-.-+.+...
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 65 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD--------------GGK---AIAVKADVSDRDQ 65 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCe---EEEEECCCCCHHH
Confidence 3566776 589999999999999999999999987766554321100 000 1122223444456
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++++++.....+=+++|++...
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 66 VFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 667777776655555777777654
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.086 Score=54.06 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=47.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEE---EEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSV---IILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advI---il~vp~ 82 (505)
++|||||-|..|+.|+..-.+-|++|.+.|.+++.-....... .+.. .++++++.+-.++||+| |.-||.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~------~i~~~~dD~~al~ela~~~DViT~EfE~V~~ 75 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADR------VIVAAYDDPEALRELAAKCDVITYEFENVPA 75 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccc------eeecCCCCHHHHHHHHhhCCEEEEeeccCCH
Confidence 5799999999999999999999999999998887644333221 1222 23344333322349998 445555
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.2 Score=50.12 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~----G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++.|||- ..+|.++|..|.++ +..|+++... +.++++.++. +|+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 57999995 78999999999988 7788887532 1356666666 999999997
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-+..+. ...+.+|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 764332 23577999999998764
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.4 Score=50.65 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCcEEEEcccHHHHHHHHH--HHh----CCCcEEEEeCChhHHHH-------HHHhhcccCCCCeeeeCCHHHHHhhcCC
Q 010652 6 LSRIGLAGLAVMGQNLALN--VAE----KGFPISVYNRTTSKVDE-------TLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~--La~----~G~~V~v~dr~~~~~~~-------~~~~~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
+.||+|||.|..+.+.-.- |.+ .+.++.++|.++++.+. +.++... ..++..++|.+++++.
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~--~~kv~~ttd~~eAl~g--- 77 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA--PVKVEATTDRREALEG--- 77 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC--CeEEEEecCHHHHhcC---
Confidence 4689999999988765322 222 24579999999988652 2222111 1257889999999987
Q ss_pred CcEEEEecCCCc-----------------------------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHH
Q 010652 73 PRSVIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 73 advIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~ 117 (505)
+|+|+.++-.|. .+-+.++.+.. +.|+..+++-+|-....|+..
T Consensus 78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~-~~P~Aw~lNytNP~~~vTeAv 156 (442)
T COG1486 78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEK-VCPNAWMLNYTNPAAIVTEAV 156 (442)
T ss_pred CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHH-hCCCceEEeccChHHHHHHHH
Confidence 999999985542 12222233333 447888888888776667666
Q ss_pred HHHHHHcCCeEEc
Q 010652 118 IHEASQKGLLYLG 130 (505)
Q Consensus 118 ~~~l~~~gi~~v~ 130 (505)
.+... .+..++
T Consensus 157 ~r~~~--~~K~VG 167 (442)
T COG1486 157 RRLYP--KIKIVG 167 (442)
T ss_pred HHhCC--CCcEEe
Confidence 65444 234444
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.38 Score=47.80 Aligned_cols=89 Identities=10% Similarity=0.103 Sum_probs=55.9
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EE
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VI 77 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Ii 77 (505)
|.....+.+-|.| .|-+|..+|..|+++|++|.+.+|++++.+++.+.... .. .++ +-
T Consensus 1 ~~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~----------------~~---~~~~~~~ 61 (275)
T PRK05876 1 MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA----------------EG---FDVHGVM 61 (275)
T ss_pred CCCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CeEEEEe
Confidence 4442333466666 69999999999999999999999998776654432110 00 222 22
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.=+.+...++.+++++.....+=+++|+...
T Consensus 62 ~Dv~d~~~v~~~~~~~~~~~g~id~li~nAg 92 (275)
T PRK05876 62 CDVRHREEVTHLADEAFRLLGHVDVVFSNAG 92 (275)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 2333444566666666655545577777654
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.21 Score=56.42 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|+|+| +|+..|..|++.|. +++++|.+.=....+..........+..-....++.+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 4689999999 89999999999994 7899887652222222110000000000011222223222 266777777765
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
- ..+.+++++ ..-|+|||++-.. ..-..+.+.+.++++.++.+...+|
T Consensus 185 i-~~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 L-TEDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred C-CHHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 3 233444444 3458999998764 3333445566677888776554444
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.18 Score=50.06 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=58.7
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||-+ .+|.+|+..|..+++.|++++... .++.+..++ +|+++.++--+..
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 579999974 689999999999999999997442 255555665 9999999976544
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
++ .+.+.+|.++||.+....
T Consensus 213 i~------~d~vk~gavVIDVGinrv 232 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINRV 232 (283)
T ss_pred cc------cccccCCCEEEecCCccc
Confidence 43 356789999999988754
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.09 Score=40.81 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 11 iIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|||.|.-|...|..|+++|++|.++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
|
... |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.24 Score=57.29 Aligned_cols=125 Identities=20% Similarity=0.201 Sum_probs=73.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|-+|..++.+|+..|. ++++.|-+.=....+..+.. .....+-.-....++.+..+ .|++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3689999999999999999999997 67888766533333322110 00000001112223333322 266777777664
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhH-HHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t-~~~~~~l~~~gi~~v~~pvsg 135 (505)
- ..+.++++. ..-|+|||+......++ ..+.+.+.+.++.++.+++.|
T Consensus 411 I-~~en~~~fl---~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 V-AAETIDAFL---KDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred C-CHHHHHHHh---hCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 2 233344443 34589999887654333 344556677889888876654
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.27 Score=51.78 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=68.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+.++ .+++-+.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc
Confidence 4689999999999999999999998 68899877533322222110 00000000011112222222 156666555442
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
-..+ -..+ .+..-++|||++-.. ..-..+.+.+...++.|+.+.+.|
T Consensus 121 i~~~-~~~~---~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LDPS-NAVE---LFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CChh-HHHH---HHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 1111 1222 344558999987653 333334556667788888765554
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.38 Score=49.36 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~ 83 (505)
++|-|.|. |-+|..+++.|+++|++|++.+|++++.+++.++.... . +++ +..=+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~----------------g---~~~~~v~~Dv~d~ 69 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA----------------G---GEALAVVADVADA 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEecCCCH
Confidence 35777775 99999999999999999999999988776654421100 0 222 22333444
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++.+++.+...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 70 EAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 56677777776656555788876543
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.072 Score=56.10 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+|.|||.|.+|.+.|..|+++|++|+++|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999999999753
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.61 Score=48.75 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..++.+|+..|. +++++|.+.=....+..+-. .....+..-+....+.+..+ .+++-+...+..
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRER 119 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeee
Confidence 3589999999999999999999997 79999987533222221100 00000000011222222222 155555555542
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
- ..+.+.+ .+..-|+|||++-.. ..-..+.+.+...++.++.+.+.
T Consensus 120 i-~~~~~~~---~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~ 165 (370)
T PRK05600 120 L-TAENAVE---LLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVL 165 (370)
T ss_pred c-CHHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEe
Confidence 1 1222223 344568999987763 33333445556678877776554
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.41 Score=46.57 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|+++|++|++++|+++..+++.+..... -.. .+.+..-+.+...
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 74 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--------------GGA---AEALAFDIADEEA 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---eEEEEccCCCHHH
Confidence 46778875 99999999999999999999999987765544321100 000 2233333444455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
+..+++++.....+=+.+|.+..
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666654444466666544
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.073 Score=55.19 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=32.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.8 Score=46.11 Aligned_cols=106 Identities=17% Similarity=0.019 Sum_probs=67.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|+|||--.=-..+++.|+++|++|.+|.-.... ..+. ++..+.+.++.++. +|+||+++|-...
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~~---------~~~~~~~~~~~~~~---~~~~i~p~~~~~~~ 68 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGFT---------GAVKCELLELDLTT---LDVVILPVPGTSHD 68 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-cccc---------cceeecchhhhhcc---CCEEEECCccccCC
Confidence 47999999888899999999999999988754210 0011 24556677776665 9999999993221
Q ss_pred --HHHH-------H-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 --VDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~v-------l-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
++.+ + ++++..++++.++.- +...+ .+.+.++++|+.+++
T Consensus 69 ~~i~~~~~~~~~~l~~~~l~~~~~~~~~~~-G~~~~----~l~~~a~~~gi~v~~ 118 (287)
T TIGR02853 69 GKVATVFSNEKVVLTPELLESTKGHCTIYV-GISNP----YLEQLAADAGVKLIE 118 (287)
T ss_pred ceEecccccCCccccHHHHHhcCCCCEEEE-ecCCH----HHHHHHHHCCCeEEE
Confidence 1111 1 456666766555443 33222 222356678888874
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.36 Score=46.95 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=56.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+|..|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--------------GRR---ALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--------------CCc---eEEEecCCCCHHH
Confidence 56888875 99999999999999999999999987765554332100 000 2233333444456
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+.+.+.+=++||++..
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAF 91 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCc
Confidence 66777766665555577777654
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.076 Score=55.41 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 35899999999999999999999999999999875
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.41 Score=46.76 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=53.0
Q ss_pred CCccCCCc-EEEEccc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 1 MEASALSR-IGLAGLA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 M~~~~~~~-IgiIGlG---~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|+..+..| +-|.|.+ -+|..+|+.|++.|++|++.+|+. +.++..++. . . .. ...+
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~--------~---~-----~~---~~~~ 60 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL--------V---D-----EE---DLLV 60 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh--------c---c-----Cc---eeEE
Confidence 66555434 5666875 799999999999999999999883 333222210 0 0 00 1222
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
-.=+.+.+.++++++.+.....+=|++|+...
T Consensus 61 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 61 ECDVASDESIERAFATIKERVGKIDGIVHAIA 92 (252)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 22234445677777776655544567777544
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.23 Score=50.72 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=64.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++-|.|.|..|+..|.++...|.+|.|++.+|-+.-++.-.| +. ..+.+|++.. +|++|.++-.-
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~-V~~m~~Aa~~---gDifiT~TGnk--- 275 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKT---GDIFVTATGNK--- 275 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cE-EEEhHHhhhc---CCEEEEccCCc---
Confidence 3577889999999999999999999999999997654444332 33 3467777776 89999987553
Q ss_pred HHHH-HHHhhccCCCCEEEeCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGG 107 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~s 107 (505)
.|+ .+-...++.|.|+.+.+
T Consensus 276 -dVi~~eh~~~MkDgaIl~N~G 296 (420)
T COG0499 276 -DVIRKEHFEKMKDGAILANAG 296 (420)
T ss_pred -CccCHHHHHhccCCeEEeccc
Confidence 334 33444577888887765
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.46 Score=50.23 Aligned_cols=108 Identities=15% Similarity=0.084 Sum_probs=62.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... ..+.+ +... . .+... ...+|+||.+ +|.+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~g-------i~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEG-------NLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcC-------CEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996643211 11111 2332 2 22221 1238888765 44432
Q ss_pred h-HH---HHHH--HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 85 P-VD---QTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 85 ~-v~---~vl~--~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
+ +. +++. +++..+.+..|-|.+|++...++.-+...+...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 2 22 2221 22222223356667777776666666677777663
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.48 Score=46.84 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=55.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |-+|..+|..|+++|++|++.+|+ ++.++..+..... -.. ...+..=+.+...
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 68 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN--------------GGK---AKAYHVDISDEQQ 68 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--------------CCe---EEEEEeecCCHHH
Confidence 45777775 899999999999999999999999 6555444321100 000 2233344455556
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++.+...+.+=+++|++...
T Consensus 69 ~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 69 VKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHHHcCCcCEEEECCCC
Confidence 777777776655555777776543
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.53 Score=45.95 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=54.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.| .|.+|..++..|+++|++|.+.+|++++.+++.++.... ... .....+..-+.+...
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~Dl~~~~~ 72 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD--------------VAG-ARVLAVPADVTDAAS 72 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------cCC-ceEEEEEccCCCHHH
Confidence 3466667 589999999999999999999999988776655432100 000 001222233344455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++++.....+=+++|++..
T Consensus 73 ~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 73 VAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHHHhCCCcEEEECCC
Confidence 66666666665555567777654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.38 Score=48.31 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=56.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |-+|..+|..|+++|++|.+.+|++++.+++.+..... -.. ...+-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--------------~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--------------GGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCc---EEEEEccCCCHHH
Confidence 45778885 99999999999999999999999988776655432100 000 2222233334455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++++.+.....+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555555777776543
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.083 Score=56.42 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=34.0
Q ss_pred cCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 4 ~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
++.++++|||+|.-|.+-|+.|.+.|++|+++.|+.+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 3567899999999999999999999999999999875
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.37 Score=50.28 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=33.1
Q ss_pred CCCcEEEE----c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010652 5 ALSRIGLA----G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 5 ~~~~IgiI----G-lG~mG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
++++|.|+ | .|.+|..++..|.++||+|++.+|++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45689999 6 5999999999999999999999998765
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.077 Score=53.84 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=29.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3799999999999999999999999999999875
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.69 Score=45.05 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=34.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
++|-|+|. |.+|..++..|+++|++|.+.+|++++.+...
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 56889987 99999999999999999999999987655544
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.54 Score=47.73 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=57.2
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|.....++|-|.| .|-+|..+++.|+++|++|++.+|+.++.+++.+... . .. .. ..++..=
T Consensus 1 m~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~--------~-~~-----~~---~~~~~~D 63 (322)
T PRK07453 1 MSQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG--------I-PP-----DS---YTIIHID 63 (322)
T ss_pred CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh--------c-cC-----Cc---eEEEEec
Confidence 4433345677887 4999999999999999999999999887766554310 0 00 00 2233333
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+...++.+++++.....+=+++|+...
T Consensus 64 l~~~~~v~~~~~~~~~~~~~iD~li~nAg 92 (322)
T PRK07453 64 LGDLDSVRRFVDDFRALGKPLDALVCNAA 92 (322)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEECCc
Confidence 44445566666665544333467777654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.56 Score=46.11 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCC--CeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQL--PLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~--~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|.-||+|. | .++..+++.|.. |+++|+++..++...+.....+ . .+..... +. ..|+|+.....
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~--~~-----~fD~Vvani~~- 189 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG--DL-----KADVIVANILA- 189 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC--CC-----CcCEEEEcCcH-
Confidence 5789999998 6 456667777775 9999999998876655432211 0 1111110 00 27888876544
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
..+..++.++...+.+|..++-.+- .........+.+.+.|+..+.
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi-~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGI-LEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEC-cHhhHHHHHHHHHHCCCEEEE
Confidence 3566777888888988877765433 334555666777777776554
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.28 Score=49.45 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=56.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~----G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+|.|||- ..+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 57999995 88999999999988 6789887532 1256666666 999999996
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-+..+. ...+++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 654322 13477999999998654
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.1 Score=54.16 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+.+|.|||.|..|..+|..|++.|++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998864
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.2 Score=42.60 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=52.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-|.+|..=++.|++.|-+|+++..+. +....+...+... -+.....++++. .+++||.++++. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 579999999999999999999999999997665 4555555443210 011122333333 389999999885 4
Q ss_pred HHHHHH
Q 010652 86 VDQTIA 91 (505)
Q Consensus 86 v~~vl~ 91 (505)
+.+-+.
T Consensus 85 ln~~i~ 90 (210)
T COG1648 85 LNERIA 90 (210)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.45 Score=49.59 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=62.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh-c----ccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA-H----REGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~-~----~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|+|||+|-.|+.++..|++.|. +++++|.+.=....+..+. . .-|. ...-+...++.+..+. +++. +.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk-~~~KVevaa~rl~~in-~~I~--~~ 252 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELRE-APKKVDYFKSRYSNMR-RGIV--PH 252 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCC-cchHHHHHHHHHHHhC-CeEE--EE
Confidence 589999999999999999999997 6889987642211111110 0 0000 0000111222222221 3432 33
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pv 133 (505)
+.. .-.+.++ .+..-++|++|.-... .-..+.+.+...++-|+++++
T Consensus 253 ~~~-I~~~n~~----~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 253 PEY-IDEDNVD----ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred eec-CCHHHHH----HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeee
Confidence 321 1112222 3445689999877543 222345566777888888764
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.59 Score=45.75 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=34.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
+++-|.|. |-+|..+++.|+++|++|.+.+|+.++.+++.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 45777775 889999999999999999999999877666543
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.2 Score=41.64 Aligned_cols=122 Identities=15% Similarity=0.136 Sum_probs=77.5
Q ss_pred EEEEc--ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 9 IGLAG--LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 9 IgiIG--lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+-=|| .|.++--+| ++....+|+..|++++.++.......+-|-.++.. ..+..++..++.++|.||+-=. ..
T Consensus 38 l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~~ 113 (187)
T COG2242 38 LWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--GN 113 (187)
T ss_pred EEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--CC
Confidence 44455 566666666 55555689999999998766554322211012322 2244455556667999998765 35
Q ss_pred HHHHHHHHhhccCCC-CEEEeCCCCChhhHHHHHHHHHHcCC-eEEcCCCCCC
Q 010652 86 VDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGL-LYLGMGVSGG 136 (505)
Q Consensus 86 v~~vl~~l~~~l~~g-~iiId~st~~~~~t~~~~~~l~~~gi-~~v~~pvsgg 136 (505)
++.+++.....|++| .+|++..+. ++.....+.+++.|+ ..+...++-+
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~~ 164 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISRG 164 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeecc
Confidence 899999999888775 566666553 455556677788888 5555555544
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.3 Score=49.09 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~----G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++.|||- ..+|.++|..|.++ +..|+++... +.++++..++ +|+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR---------------------SKNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 57999995 78999999999988 4678887532 1356666666 999999998
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-+..+. ...+.+|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 765432 24577999999998764
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.73 Score=44.81 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=59.4
Q ss_pred EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC--
Q 010652 32 ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-- 109 (505)
Q Consensus 32 V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-- 109 (505)
|.+||+++++.+++.+.. ++..+++++++++. .+|.|++|.|+. ...+..... |+.|.-++-.+..
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~~--~vDaVviatp~~-~H~e~a~~a---L~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLPE--DVDIVVEAASQE-AVKEYAEKI---LKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhcC--CCCEEEECCChH-HHHHHHHHH---HHCCCCEEEECCccc
Confidence 568999999988887643 34678899999752 499999999986 344444333 4455433335553
Q ss_pred -ChhhHHHHHHHHHHcCCeE-EcCCCCCC
Q 010652 110 -WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 110 -~~~~t~~~~~~l~~~gi~~-v~~pvsgg 136 (505)
.....+++.+..++.|..+ +..+-.+|
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~i~sGai~g 101 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVYIPSGAIGG 101 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEChHHHHH
Confidence 3345666666677777654 44333333
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.54 Score=45.06 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
.+|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 46 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMK 46 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47888886 88999999999999999999999988776653
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.14 Score=51.61 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=45.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|.|. |.+|..++..|+++|++|++.+|+++....+...+.. -+.. ..+.+++.+.++++|+||.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVE----IVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCce----EEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 47899985 9999999999999999999999987654332211110 0111 1233334333445788887653
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.1 Score=54.69 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=31.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~ 39 (505)
+.+|.|||.|.+|.++|..|++. |++|+++|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 46899999999999999999998 99999999875
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.65 Score=45.88 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=53.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+.|-|.| .|.+|..++..|+++|++|++.+|++++.+.+.+... .. ..++-.-+.+...
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 63 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYG-----------------DR---LLPLALDVTDRAA 63 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcc-----------------CC---eeEEEccCCCHHH
Confidence 4678887 5999999999999999999999999887665543210 00 1122222333345
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++...+.+=+.+|++...
T Consensus 64 ~~~~~~~~~~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 64 VFAAVETAVEHFGRLDIVVNNAGY 87 (275)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666655544444667776543
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.46 Score=44.32 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=51.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~-dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++.|+|+|..|..++..|.+.|+++.+| |.++.+...... ++....+.+++.+...+.+.++++++....-
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~--------g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~ 72 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVD--------GLPVLGGDEDLLRYPPDEVDLVVAIGDNKLR 72 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCcccC--------CccEECCHHHHhhhcccccEEEEEcCCHHHH
Confidence 4779999999999999999999998866 665543221111 2333445555544333467888898865544
Q ss_pred HHHHHHHhh
Q 010652 87 DQTIAALSE 95 (505)
Q Consensus 87 ~~vl~~l~~ 95 (505)
+.+++.+.+
T Consensus 73 ~~i~~~l~~ 81 (201)
T TIGR03570 73 RRLFEKLKA 81 (201)
T ss_pred HHHHHHHHh
Confidence 555555543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.81 Score=45.92 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=56.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
+++-|.|. |-+|..+|..|+++|++|.+.+|++++.+++.+.... . .+++. .=+.+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-----------------~---~~~~~~~~Dv~d~ 69 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-----------------D---DRVLTVVADVTDL 69 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-----------------C---CcEEEEEecCCCH
Confidence 45777775 9999999999999999999999998877665543110 0 22222 334444
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++++++++...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 70 AAMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 56667777766655445777776543
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.20 E-value=1 Score=45.92 Aligned_cols=42 Identities=26% Similarity=0.530 Sum_probs=34.2
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHHHHHHh
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~~V~-v~dr~~~~~~~~~~~ 48 (505)
-+||+||.|.||+.+....++ .|.+|. +-||+.+.+.+..+.
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ 61 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDR 61 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHH
Confidence 489999999999999988775 588876 559998887766553
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.52 Score=49.24 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=66.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--------HHHHHHHhhcccC----CCCeeeeCCHHHHHhhcCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--------KVDETLDRAHREG----QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~--------~~~~~~~~~~~~g----~~~i~~~~s~~e~v~~l~~ad 74 (505)
.+|+|=|.|++|..+|+.|.+.|.+|++.+-+.. .++.+.+.....+ ..+.+..+. +++... .||
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~--~cD 284 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV--DCD 284 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc--cCc
Confidence 5899999999999999999999999998866655 0111110000000 001222222 444432 388
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+.+=|--.+.....-++. |.. ++|+...|.. .|.+..+.+.++|+.|+.
T Consensus 285 Il~PcA~~n~I~~~na~~----l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 285 ILIPCALENVITEDNADQ----LKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred EEcccccccccchhhHHH----hhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 877665443322222333 322 3788887764 445666667789987764
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.92 Score=38.81 Aligned_cols=100 Identities=11% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC--
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-- 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~-- 83 (505)
..||-|+|-|..+..+.+.+.+.|+++.+.+.+++...... .. +|.++..=+..
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~---------------------~~---ad~~~~~~~~~~~ 57 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHV---------------------DM---ADEAYFEPPGPSP 57 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHH---------------------HH---SSEEEEEESSSGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccc---------------------cc---cccceecCcchhh
Confidence 46899999999999999999999999888777776422111 11 44443221222
Q ss_pred ---chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 84 ---SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ---~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
..++.+++-... .|-..+..+-+......++.+.+.+.|+.|++.+
T Consensus 58 ~~yl~~e~I~~ia~~---~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 58 ESYLNIEAIIDIARK---EGADAIHPGYGFLSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp GTTTSHHHHHHHHHH---TTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-
T ss_pred hhhccHHHHhhHhhh---hcCcccccccchhHHHHHHHHHHHHCCCEEECcC
Confidence 234555543333 2666777888888888899999989999999753
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.55 Score=45.56 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=65.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEe-----c
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL-----V 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~-----v 80 (505)
++|.=||+| |..|+.-||+.|.+|++.|.+++.++.........| ..+ -...+.+|+...=++-|+|+++ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 578889998 779999999999999999999988876664433221 111 1234666666532447988865 4
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~ 106 (505)
|++ +.++......++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 553 44677777788888776653
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.12 Score=54.39 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
..+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 46899999999999999999999999999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.24 Score=49.81 Aligned_cols=120 Identities=8% Similarity=0.098 Sum_probs=67.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|-+|..+|.||+..|. +|+++|.+.-....+..+-.-. ...+-.-+....+-++++. +++-+......
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4689999999999999999999998 5999997754333332210000 0000000111112222221 45555555432
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
... +. +.+-++||++.. .+.....+.+.+.++++.|+.+...|
T Consensus 98 -~~~----~~---l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 -LTT----DE---LLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred -CCH----HH---HhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 111 11 234468888754 55555566677777888888765443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.16 Score=40.49 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+|.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999998875
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.5 Score=46.12 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=55.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..+|..|+++|++|++.+|++++.+...+.... .. .+..++-.-+.+...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~----------------~~-~~~~~~~~Dl~d~~~ 75 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA----------------LG-IDALWIAADVADEAD 75 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh----------------cC-CeEEEEEccCCCHHH
Confidence 5688887 59999999999999999999999998776654432110 00 002233333444455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++..++++.....+=+.||.+...
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666666655455777777543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 505 | ||||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 1e-135 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 1e-134 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 1e-134 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-134 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-132 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 1e-132 | ||
| 1pgn_A | 482 | Crystallographic Study Of Coenzyme, Coenzyme Analog | 1e-128 | ||
| 2jkv_A | 505 | Structure Of Human Phosphogluconate Dehydrogenase I | 1e-125 | ||
| 4gwg_A | 484 | Crystal Structure Analysis Of 6-Phosphogluconate De | 1e-125 | ||
| 2p4q_A | 497 | Crystal Structure Analysis Of Gnd1 In Saccharomyces | 1e-124 | ||
| 1pgj_A | 478 | X-Ray Structure Of 6-Phosphogluconate Dehydrogenase | 6e-77 | ||
| 4e21_A | 358 | The Crystal Structure Of 6-Phosphogluconate Dehydro | 5e-18 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 2e-07 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 7e-07 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 9e-07 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 3e-05 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 1e-04 |
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
|
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
|
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 | Back alignment and structure |
|
| >pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 | Back alignment and structure |
|
| >pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 | Back alignment and structure |
|
| >pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 | Back alignment and structure |
|
| >pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 | Back alignment and structure |
|
| >pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase From Geobacter Metallireducens Length = 358 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 505 | |||
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 0.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 0.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 1e-130 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 1e-20 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 1e-20 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 2e-20 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 3e-20 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 3e-20 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 5e-20 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 4e-19 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 5e-19 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 2e-18 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 3e-18 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 6e-18 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 7e-18 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 8e-18 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 2e-16 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 3e-15 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 3e-12 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 4e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 |
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 816 bits (2111), Expect = 0.0
Identities = 244/478 (51%), Positives = 321/478 (67%), Gaps = 11/478 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ L A+ + G ++
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLE 58
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+ V +++PR +I+LVKAG VD I L + GD IIDGGN Y +T RR + K
Sbjct: 59 EMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDK 118
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGS 183
G+L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+ G+
Sbjct: 119 GILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGA 178
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G+FVKMVHNGIEYGDMQLI EAY ++K V GL + E+A+ F+EWNK EL+SFL+EITA I
Sbjct: 179 GHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI 238
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
K +D G+ L+ KI D G KGTGKWT A E V I ++ R LS LK+ER
Sbjct: 239 LKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 297
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+A+K LK QN+ DKK ++D+R+ALYASKI SYAQG LLR + E GW
Sbjct: 298 QASKKLKGP------QNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWT 351
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D F + Q +WRR +
Sbjct: 352 LNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAIST 411
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWT 480
+ AGI P +LS++D YR A LPANL+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 412 GVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 469
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 816 bits (2109), Expect = 0.0
Identities = 235/479 (49%), Positives = 322/479 (67%), Gaps = 12/479 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + G+ G+AVMG+NLALNV +G+ +++YNRTTSK +E + L T
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKN---LVFTKTLE 60
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV S+++PR ++++V+AG+ D TI +L + GD +IDGGN + +T RR E +
Sbjct: 61 EFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADS 120
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV--DDGPCVTYIGEGG 182
G+ ++G GVSGGE+GA GPS+MPGG EAY+ + I +++AA+ D PCV Y+G G
Sbjct: 121 GINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANG 180
Query: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242
+G++VKMVHNGIEYGDMQLI+E+YD+LK + GLSNAE+ IF+EWN+GEL+S+L+EIT +
Sbjct: 181 AGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE 240
Query: 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEER 302
+ K KD+ GEG +VDKILDK G KGTGKWT + A +L V P I S+ RY+S K+ER
Sbjct: 241 VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDER 300
Query: 303 EKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW 362
KA+KVL L DKK +I+ +R+ALY SKI SYAQG LR S E W
Sbjct: 301 VKASKVLSGPALDFSG-------DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDW 353
Query: 363 NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVG 422
+L +G +A+IW+ GCIIRA FL I A+ ++ L +L++D F + Q A R VV
Sbjct: 354 DLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVS 413
Query: 423 LAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
LA+ AG P +++SY+D+YR LPANL+QAQRD FGAHTYER D+ G FH +W
Sbjct: 414 LAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 472
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 814 bits (2106), Expect = 0.0
Identities = 237/476 (49%), Positives = 318/476 (66%), Gaps = 12/476 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
+ +IG+ G+AVMG+NLALN+ +G+ +S++NR+ K +E + + L +YT +
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVK 70
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV S++ PR ++++VKAG+ D I +L ++ GD IIDGGN ++ +T RR E S +
Sbjct: 71 EFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAE 130
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGS 183
G ++G GVSGGEEGA GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+
Sbjct: 131 GFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGA 190
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G++VKMVHNGIEYGDMQLI+EAY +LK L+N ELA+ F EWN GEL S+L++IT DI
Sbjct: 191 GHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDI 250
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
F KDE G LVD ILD+ KGTGKWT Q A +L I S+ RY+S LK++R
Sbjct: 251 FTKKDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRV 309
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
A+KVL + DK I+ VR+ALY KI SYAQG + LR+ S E W+
Sbjct: 310 AASKVLSGPQAQPAG-------DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWD 362
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN+GE+A+I++ GCIIRA FL +I A NP +A+L++ P F + Q A R VV
Sbjct: 363 LNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAY 422
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
A+ GI P A+++Y+D+YR A LPANL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 423 AVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 478
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 805 bits (2082), Expect = 0.0
Identities = 231/488 (47%), Positives = 316/488 (64%), Gaps = 16/488 (3%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
+ GL GLAVMGQNL LN A+ GF + YNRT SKVD L + + G
Sbjct: 5 HHHHMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK--SIIGA 62
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
+ DF+ ++RPR V++LVKAG+PVD I + + GD IIDGGN + ++ RR E
Sbjct: 63 TSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEE 122
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
+KG+L++G GVSGGEEGAR+GPSLMPGGS EA+ +I++I Q ++A+ D PC ++G
Sbjct: 123 LKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGP 182
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
G+G++VKMVHNGIEYGDMQLI EAYD++K +GG ++ E++++F +WN G L+SFLVEIT
Sbjct: 183 AGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEIT 242
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
DI K D G+ LV+KI+D G KGTGKWT A +L + I ++ R LS LK
Sbjct: 243 RDILKFDDVDGK-PLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKN 301
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ER +A+KVL + + D+++ +DD+ QALYASKI SYAQG L+R +
Sbjct: 302 ERIRASKVLPGPEVPKDAV-----KDREQFVDDLEQALYASKIISYAQGFMLIREAAATY 356
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GW LN +A +W+GGCIIR+VFL +I KAY+ P+L +L+ + FA + + Q+ WR+
Sbjct: 357 GWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKS 416
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS------ 474
+ LA + GI TP +LS++D YR RLPANL+QAQRD FGAHT+ + S
Sbjct: 417 IALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVD 476
Query: 475 --FHTEWT 480
H WT
Sbjct: 477 KDIHINWT 484
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 768 bits (1986), Expect = 0.0
Identities = 168/479 (35%), Positives = 260/479 (54%), Gaps = 10/479 (2%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP-LTGHYTPRDFV 67
+G+ GL VMG NLALN+AEKGF ++V+NRT SK +E + L T F
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S+++PR +ILV+AG+ D TI L + GD ++D GN + + RR + GL
Sbjct: 64 ASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR 123
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 186
+LGMG+SGGEEGAR GP+ PGG+ + IR I++ AA+ DDG PCVT G GG+G+
Sbjct: 124 FLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSC 183
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW-NKGELESFLVEITADIFK 245
VKM HN EY +Q+ E +D+L+ + GL+N E+A + ++W +K L+S++++I+ +
Sbjct: 184 VKMYHNSGEYAILQIWGEVFDILRAM-GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAAR 242
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
KD+ G L + ++D+ G KGTG W+ Q+A E+ V AP++ ++ R + K ER+
Sbjct: 243 AKDKDGS-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQAN 301
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 365
A I + ++ + I YAQ LR + LN
Sbjct: 302 ASNAPGITQSPGYTLKNKS-PSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLN 360
Query: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA- 424
++ GCI++ L + +A+++NPN+++L+ F E+ +R +V L
Sbjct: 361 LPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA--FQTEIRAGLQNYRDMVALIT 418
Query: 425 ISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+S P + ASL+Y L LV QRD+FG H YER+D+ G +W +L
Sbjct: 419 SKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPEL 477
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 381 bits (981), Expect = e-130
Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 53/345 (15%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ GL MG ++ + + G VY+ + V REG + G + +F
Sbjct: 24 QIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQA----LEREG---IAGARSIEEFC 76
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ +PR V ++V A VD + ++ ++ D +IDGGN Y + RR + +G+
Sbjct: 77 AKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGIT 135
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT----------- 176
Y+ +G SGG G G LM GG +A + + + +A + P
Sbjct: 136 YVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAEL 195
Query: 177 ---YIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA--------------- 218
+ G G+G+FVKMVHNGIEYG M +E ++L H
Sbjct: 196 GYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDF 255
Query: 219 -----ELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWT 272
+LA+I + W +G + S+L++++A + + + + G G+WT
Sbjct: 256 YRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPD------LQEFQGRVSDSGEGRWT 309
Query: 273 VQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDE 317
V A + V A ++++L R+ S +++ A ++L + ++ E
Sbjct: 310 VAAAIDEGVPAHVLSSALYERFSSRGEDDF--ANRLL--SAMRYE 350
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 34/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG GL +MG + N+ + G ++V+NRT K D + R G+ TP + V
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGR-------TPAEVV 84
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
V + + + + PG C +D + +
Sbjct: 85 ---STCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVD-------MSTVDADTVTEL 134
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ +G +L VSG ++ + G ++ G Y + Q + G
Sbjct: 135 AQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM------GKTSF 188
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++GE G+ + ++ N ++ M I+E
Sbjct: 189 FLGEVGNAAKMMLIVNMVQGSFMATIAEG 217
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 34/210 (16%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+ G GL +MG +A N+ GF ++V+NR +K + R+ +P +
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQAS-------SPAEV 54
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERR 117
I ++ + + + E + G ID +
Sbjct: 55 C---AACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYID-------MSTVDDETSTA 104
Query: 118 IHE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCV 175
I + +G +L VSG ++ A G ++ G + + + G
Sbjct: 105 IGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAAL------GKKC 158
Query: 176 TYIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++GE G G +K+V N I M + E
Sbjct: 159 LHLGEVGQGARMKLVVNMIMGQMMTALGEG 188
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 44/215 (20%), Positives = 88/215 (40%), Gaps = 34/215 (15%)
Query: 2 EASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY 61
S + +G GL +MG+ +++N+ + GF ++V+NRT SK DE ++ +
Sbjct: 17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCE------- 69
Query: 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT---- 114
+P + + ++ + I ++ + + E + G ID +
Sbjct: 70 SPAEVI---KKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYID-------MSTVDA 119
Query: 115 --ERRIHE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVD 170
+I+E + KG ++ VSG ++ A G ++ G + +
Sbjct: 120 ETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVL----- 174
Query: 171 DGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
G Y+G+ G+G +K++ N I M SE
Sbjct: 175 -GKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEG 208
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 34/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+ G GL +MG +A N+ + G ++++NR+ K +E TP + V
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAA-------TPCEVV 55
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+ ++ + ++ + E + G +D + +RI
Sbjct: 56 ---ESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVD-------MSTVDPATSQRI 105
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
KG +L VSG ++ A G ++ G Y+ +K+ G +
Sbjct: 106 GVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM------GKKII 159
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++G+ G G +K+V N + G M E
Sbjct: 160 HLGDVGKGAEMKLVVNMVMGGMMACFCEG 188
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG+ ++ N+ + G+ + V +R + + + G T +
Sbjct: 7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----AG---AETASTAKAIA 59
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
++ +I ++ V + + E PG +ID + R I
Sbjct: 60 ---EQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLID-------MSSIAPLASREI 109
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ KG+ L VSGGE A G S+M GG ++ D+++ + V
Sbjct: 110 SDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM------AGSVV 163
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
+ G+ G+GN K+ + I ++ +SEA
Sbjct: 164 HTGDIGAGNVTKLANQVIVALNIAAMSEA 192
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 34/209 (16%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+I G MG +A + E G+ + V+NRT ++ H R
Sbjct: 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGAT-------IHEQARAA 84
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAA--LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+ V+ +++ G+ V + A ++ M PG +D R
Sbjct: 85 A---RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLD-------MASITPREARDH 134
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
G+ +L VSGG GA G +M GG + +L+ T
Sbjct: 135 AARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR-------AT 187
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++G GSG K+ + I + ++EA
Sbjct: 188 HVGPHGSGQLTKLANQMIVGITIGAVAEA 216
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 4e-19
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 35/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG +A+N+A G + V + A T R
Sbjct: 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADELLSLGA--------VNVETARQVT 56
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+ + I+V V+ + ++ G I+D + +R
Sbjct: 57 ---EFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVD-------MSSISPIETKRF 106
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ ++ G YL VSGGE GAR G S+M GG + ++ ++ + + G +T
Sbjct: 107 AQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDIL------GKNIT 160
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
+G G G K+ + I +++ +SEA
Sbjct: 161 LVGGNGDGQTCKVANQIIVALNIEAVSEA 189
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 5e-19
Identities = 47/224 (20%), Positives = 75/224 (33%), Gaps = 33/224 (14%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL MG +A + E ++VY+ + G T + D
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTP----LAEAG---ATLADSVADVA 69
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL------NTERRIHE- 120
+ I V + V + + L+ H PG I T +
Sbjct: 70 ----AADLIHITVLDDAQVREVVGELAGHAKPGTVIAI-------HSTISDTTAVELARD 118
Query: 121 ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
+ + + VSGG A G + M G E Y I+ + AA V + G
Sbjct: 119 LKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAV------VIHAG 172
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
E G+G +K+ N + + EA L GL L +
Sbjct: 173 EPGAGTRMKLARNMLTFTSYAAACEAM-KLAEAAGLDLQALGRV 215
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 34/236 (14%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTG 59
+ S + + GL MG +A + ++G ++++NR+ K + AH
Sbjct: 4 SDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCE------ 57
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALS-EHMSPGDCIIDGGNEWYLNT---- 114
+ + + + I ++ + + I+D T
Sbjct: 58 --SVKAAL---SASPATIFVLLDNHATHEVLGMPGVARALAHRTIVD------YTTNAQD 106
Query: 115 -ERRIHE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDD 171
+ +Q G Y+ + H + G EA+ R +L+ +
Sbjct: 107 EGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGL------ 160
Query: 172 GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227
++ + V + + M EA GL ++ A + E
Sbjct: 161 AGHTVFLPWDEALA-FATVLHAHAFAAMVTFFEAV-GAGDRFGLPVSKTARLLLET 214
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 3e-18
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 35/225 (15%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
++ GL MG +A ++A + + V+NRT K + P +
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEF--------GSEAVPLER 52
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT------ERRIHE 120
V R + + V + AL ++ G +D T RR+ E
Sbjct: 53 V---AEARVIFTCLPTTREVYEVAEALYPYLREGTYWVD-------ATSGEPEASRRLAE 102
Query: 121 -ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYI 178
+KG+ YL VSGG GA G ++M GG EA +R L V ++
Sbjct: 103 RLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAY-------AKKVVHV 155
Query: 179 GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G G+G+ VK ++N + ++ E L G+S + E+
Sbjct: 156 GPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQ-GVSAEKALEV 199
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 34/210 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+G+ GL MG A + G + L EG + R+F
Sbjct: 9 HVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA----EGACGAAA--SAREFA 62
Query: 68 LSIQRPRSVIILVKAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+++ILV + V Q + ++ M PG ++ ++ + I
Sbjct: 63 ---GVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMV-------SSTISSADAQEI 112
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ L L VSGG A G ++M GS A+ ++ +L VA+ V
Sbjct: 113 AAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASN------VY 166
Query: 177 YIGE-GGSGNFVKMVHNGIEYGDMQLISEA 205
I + G+G+ VK++H + + +EA
Sbjct: 167 RISDTPGAGSTVKIIHQLLAGVHIAAAAEA 196
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 8e-18
Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 33/226 (14%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG GL MG+ +A+N+ ++G + ++ + V + +G +
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA----QG---AQACENNQKVA 58
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT-----ERRIH 119
+ + V+ + + G I+D +++ ++
Sbjct: 59 ---AASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVD------MSSVSPSSTLKMA 109
Query: 120 E-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTY 177
+ A++KG+ Y+ VSGG +GA G ++M G S + I+ +L + + +
Sbjct: 110 KVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKD------IYH 163
Query: 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
+G+ G+G+ VK+V+N + +M ++EA VL GL + EI
Sbjct: 164 VGDTGAGDAVKIVNNLLLGCNMASLAEAL-VLGVKCGLKPETMQEI 208
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 33/226 (14%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+G GL MG +A N+ + G+P+ +Y+ E G +P D
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKE----FQDAG---EQVVSSPADVA 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT-----ERRIH 119
++ +I ++ + + + + + G +ID +T + +
Sbjct: 55 ---EKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDS------STIDPAVSKELA 105
Query: 120 E-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTY 177
+ + G +++ VSGG AR G + M GG + + +++L + + V Y
Sbjct: 106 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSN------VVY 159
Query: 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G G+G K+ +N + M +EA L GL LA+I
Sbjct: 160 CGAVGTGQAAKICNNMLLAISMIGTAEAM-NLGIRLGLDPKLLAKI 204
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 35/233 (15%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG 59
+++A+ ++G G +A + + G ++ Y+ +++ RA G ++
Sbjct: 20 FQSNAM-KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAE--SWRPRAEELG---VSC 73
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT----- 114
+ + VI + + H+ G D +
Sbjct: 74 KASVAEVA----GECDVIFSLVTAQAALEVAQQAGPHLCEGALYAD------FTSCSPAV 123
Query: 115 ERRIHE---ASQKGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYNNIRDILQKVAAQVD 170
+R I + + Y + V + H P ++ G + ++
Sbjct: 124 KRAIGDVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDGARR---FQAAFTLYGCRI- 179
Query: 171 DGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
GE G +KM + + G L EA GL++ LA +
Sbjct: 180 ----EVLDGEVGGAALLKMCRSAVLKGLEALFLEAL-AAAEKMGLADRVLASL 227
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-12
Identities = 34/231 (14%), Positives = 72/231 (31%), Gaps = 34/231 (14%)
Query: 4 SALSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKV---DETLDRAHREGQLPLTG 59
S ++ I G Q++A + + ++ Y+ + RA G PL
Sbjct: 22 SMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLD- 80
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT----- 114
++ V++ + G+ A+ + H+S ID LN+
Sbjct: 81 -------DVAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFID------LNSVGPDT 127
Query: 115 ERRIHE-ASQKGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYNNIRDILQKVAAQVDDG 172
+ + ++ V P L+ G + + L + +
Sbjct: 128 KALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVAGRRAVE---VAERLNALGMNL--- 181
Query: 173 PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G + +KM+ + + G L+ EA G++ L +
Sbjct: 182 --EAVGETPGQASSLKMIRSVMIKGVEALLIEAL-SSAERAGVTERILDSV 229
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 33/223 (14%), Positives = 58/223 (26%), Gaps = 38/223 (17%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR--- 64
R+G G + Q LA + +G + S R T
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-------VTETSEEDV 54
Query: 65 ---DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA 121
V+S P + + + I ++SP T R
Sbjct: 55 YSCPVVISAVTPGVALGAARRAGRHVRGIYVDINNISPE-------------TVRMASSL 101
Query: 122 SQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG-E 180
+ ++ + G ++ G + G + G E
Sbjct: 102 -IEKGGFVDAAIMGSVRRKGADIRIIASGRDAE---------EFMKLNRYGLNIEVRGRE 151
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G + +KM+ + G L+ E H GL L +
Sbjct: 152 PGDASAIKMLRSSYTKGVSALLWETL-TAAHRLGLEEDVLEML 193
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 73/540 (13%), Positives = 149/540 (27%), Gaps = 177/540 (32%)
Query: 1 MEASALSRIGLAGLAVMG-QNLALNVA-----EKGFPISVY-----------------NR 37
+E + + G+ G +AL+V + ++ +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 38 TTSKVDETL-DRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIIL--VKAGSPVDQTIA 91
++D R+ + L H R + S +++L V+ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-----NAKAW 259
Query: 92 ALSEHMSPGDCII-----DGGNEWYLNTERRIH-----------EASQKGLL--YLGMGV 133
+ C I +L+ H K LL YL
Sbjct: 260 ---NAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 134 SG-GEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN 192
E P L +A + DG T+ N+ + +
Sbjct: 316 QDLPREVLTTNPRR---------------LSIIAESIRDGLA-TW------DNWKHVNCD 353
Query: 193 GIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFL--VEITADIFKV---- 246
+ +I + +VL+ AE ++FD L F I + +
Sbjct: 354 KLT----TIIESSLNVLE------PAEYRKMFD-----RLSVFPPSAHIPTILLSLIWFD 398
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
+ +V+K+ + ++ +Q E +++ P S+ L+ E
Sbjct: 399 VIKSDVMVVVNKLHKYSLVE-------KQPKESTISIP----SIYLELKVKLENEYALHR 447
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSY----------AQGMNLLRSK 356
++ + + + +D Y S+ + M L R
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPY---LDQ-----Y---FYSHIGHHLKNIEHPERMTLFRM- 495
Query: 357 SNEKGWNLNFGEL-ARI------WKGGCIIRAVFLD-RIKKAY--QRNPNLASLVVD--- 403
L+F L +I W I + K Y +P LV
Sbjct: 496 -----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 404 --PEFAREMVQRQAAWRRVVGLAISA---GISTPGMCASLSYFDTYRRARLPANLVQAQR 458
P+ ++ + + ++ +A+ A I + + ++ Q QR
Sbjct: 551 FLPKIEENLI--CSKYTDLLRIALMAEDEAI----------FEEAHK---------QVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 51/387 (13%), Positives = 120/387 (31%), Gaps = 128/387 (33%)
Query: 156 NNIRDILQKV--AAQVDD----GPCVTYI----------GEGGSGNFVKMVHN------- 192
+++D+ + + ++D V+ E FV+ V
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 193 ---GIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDE 249
E +++ Y ++ L N ++F ++N L+ +L ++ + +++
Sbjct: 96 SPIKTEQRQPSMMTRMY--IEQRDRLYND--NQVFAKYNVSRLQPYL-KLRQALLELRPA 150
Query: 250 YGEGELVDKILDKTGMKGTGKWTVQQAAE-----------------LSVAAPTIAASL-- 290
+ L+D G+ G+GK V A + L++ ++
Sbjct: 151 --KNVLID------GVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 291 ---------DCRYLSG----------LKEEREKAAKVLKEAGLK------DEVQNVGVHV 325
D + S + + + ++LK + VQN
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----- 255
Query: 326 DKKRLID--DVR-QALYASKICSYAQGMNLLRSK---SNEKGWNLNFGELARIWKGGCII 379
+ + ++ + L ++ ++ + + L E+ +
Sbjct: 256 --AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------ 307
Query: 380 RAVFLD-RIKK----AYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGM 434
+LD R + NP S++ E R+ + W+ V ++ I
Sbjct: 308 -LKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIE---- 360
Query: 435 CASLSYFDTYRRARLPANLVQAQRDLF 461
+SL+ + PA R +F
Sbjct: 361 -SSLNVLE-------PAEY----RKMF 375
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 5e-04
Identities = 39/263 (14%), Positives = 74/263 (28%), Gaps = 75/263 (28%)
Query: 279 LSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL 338
LSV + DC+ + ++ K+ +L + + + + RL
Sbjct: 22 LSVFEDAFVDNFDCKDV----QDMPKS--ILSKEEIDHIIMSKDAVSGTLRLFW------ 69
Query: 339 YASKICSYAQGMNLLRSKSN-------EKGWNLNFGELARIWKGGCIIRAVFLDRIKKAY 391
L SK E+ +N+ L K + +
Sbjct: 70 -------------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS--MMTRMYIE 114
Query: 392 QRNPNLASLVVDPE-FAREMVQRQ---AAWRRVV-GLAISAGISTPGM------------ 434
QR+ L D + FA+ V R R+ + L + + G+
Sbjct: 115 QRDR----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 435 CAS---LSYFD------TYRRARLPANLVQAQRDL---FGAHTYERIDRPGS--FHTEWT 480
C S D + P +++ + L + R D +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 481 KLPARLVPVLVRSIELLPFVACL 503
+ L R ++ P+ CL
Sbjct: 231 Q------AELRRLLKSKPYENCL 247
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 505 | |||
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.98 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.97 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.97 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.97 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.97 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.96 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.95 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.94 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.94 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.94 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.93 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.93 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.92 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.92 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.91 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.91 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.9 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.88 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.87 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.87 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.87 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.85 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.83 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.83 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.83 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.82 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.81 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.81 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.81 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.81 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.81 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.79 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.78 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.77 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.77 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.77 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.76 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.75 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.75 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.74 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.74 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.71 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.71 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.71 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.71 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.7 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.69 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.68 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.67 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.66 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.66 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.65 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.46 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.64 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.63 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.63 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.63 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.62 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.61 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.61 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.6 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.57 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.49 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.47 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.46 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.46 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.44 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.39 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.34 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.33 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.27 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.27 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.27 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.25 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.25 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.24 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.22 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.21 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.2 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.18 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.18 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.18 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.18 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.17 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.16 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.15 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.15 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.13 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.13 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.13 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.13 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.13 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.12 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.12 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.11 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.11 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.1 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.05 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.04 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.03 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.03 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.03 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.01 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.01 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.97 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.96 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.95 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.92 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.89 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.87 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.86 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.85 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.81 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.73 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.72 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.7 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.69 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.68 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.66 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.66 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.65 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.65 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.62 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.59 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.59 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.59 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.58 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.56 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.55 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.55 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.53 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.53 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.52 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.51 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.5 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.5 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.47 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.45 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.45 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.45 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.44 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.43 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.43 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.42 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.41 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.41 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.41 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.4 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.4 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.39 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.39 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.38 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.37 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.36 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.35 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.35 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.35 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.34 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.34 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.32 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.32 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.31 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.28 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.28 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.25 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.25 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.24 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.24 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.24 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.23 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.22 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.21 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.21 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.21 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.21 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.19 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.18 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.17 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.17 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.15 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.15 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.14 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 98.12 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.12 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.11 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.1 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.1 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.09 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.08 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.08 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.07 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.06 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.06 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.06 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.05 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.04 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.03 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.02 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.01 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.01 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.01 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.0 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.99 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.99 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.98 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.97 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.97 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.95 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 97.95 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.94 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.94 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.93 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.93 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.93 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.92 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.92 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.91 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.89 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.89 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.89 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.87 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.87 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.87 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.86 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.86 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.84 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.83 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.82 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.81 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.8 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.79 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.78 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.74 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.74 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.73 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.72 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.7 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.7 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.69 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.67 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.66 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.64 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.62 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.62 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.61 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.6 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.6 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.6 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.59 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.59 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.58 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.57 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.57 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.57 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.54 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.54 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.52 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.52 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.49 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.48 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.44 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.42 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.41 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.41 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.41 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.4 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.39 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.36 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.35 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.32 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.32 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.31 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.3 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.3 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.27 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.26 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.22 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.21 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.17 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.12 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.1 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.07 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.06 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.06 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.04 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.02 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.02 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.01 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.96 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.96 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.91 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.83 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.83 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.79 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.79 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.78 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 96.77 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.76 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.73 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.72 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.72 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.69 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 96.69 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.67 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.65 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.63 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.62 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.62 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.61 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.57 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.56 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.54 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.53 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.44 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.4 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.39 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.38 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.38 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.36 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.35 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.34 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.3 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.24 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.24 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.23 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.2 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.19 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.19 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.11 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.09 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.08 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.07 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.95 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.94 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 95.92 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.85 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.84 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.82 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.81 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.81 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.8 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.8 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 95.79 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.79 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.78 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.77 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.77 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.7 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 95.69 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.67 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.67 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 95.67 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.66 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.66 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.61 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.58 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.53 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.53 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.5 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.49 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.48 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.46 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.43 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.41 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.41 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.41 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.41 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.39 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.38 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 95.37 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.37 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.35 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 95.31 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.3 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.3 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.28 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.25 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.25 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.25 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.18 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.17 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 95.16 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.15 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.15 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.14 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 95.14 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.12 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 95.11 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.11 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.11 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.1 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 95.09 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.08 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.07 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.0 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.98 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 94.97 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.96 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 94.92 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.9 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.86 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 94.85 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 94.84 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 94.8 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 94.79 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 94.76 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.75 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 94.74 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 94.72 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 94.72 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 94.71 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.71 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.71 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 94.71 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 94.69 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.67 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 94.66 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 94.64 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 94.64 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 94.63 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.63 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 94.63 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 94.61 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 94.61 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.6 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 94.59 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 94.58 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 94.58 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 94.57 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 94.57 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 94.55 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 94.55 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 94.54 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 94.54 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 94.54 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 94.53 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 94.53 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 94.53 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 94.52 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 94.5 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.5 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 94.49 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 94.48 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 94.47 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 94.47 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.45 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 94.45 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.43 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.43 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 94.43 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 94.42 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 94.41 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 94.36 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 94.35 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 94.33 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 94.32 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 94.31 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.28 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 94.28 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 94.27 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 94.26 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 94.25 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.25 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 94.24 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.23 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.23 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 94.22 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.22 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 94.22 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 94.2 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 94.19 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 94.17 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.16 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.12 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 94.11 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 94.11 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 94.11 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 94.08 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 94.08 |
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-116 Score=933.48 Aligned_cols=470 Identities=50% Similarity=0.857 Sum_probs=440.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|||||+|.||.+||++|+++||+|++|||++++++.+.+.+... .++..+.+++|+++.++.+|+||+|||++.+
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g--~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 81 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG--TKVVGAQSLKEMVSKLKKPRRIILLVKAGQA 81 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT--SSCEECSSHHHHHHTBCSSCEEEECSCSSHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCC--CceeccCCHHHHHhhccCCCEEEEecCChHH
Confidence 56899999999999999999999999999999999999988764321 1456689999999988789999999999889
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~i 165 (505)
++++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+++++.|+++|+||+++++++++|+|+.+
T Consensus 82 v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG~~ea~~~v~pll~~i 161 (484)
T 4gwg_A 82 VDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGI 161 (484)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc-CCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhhHhhhhhh
Q 010652 166 AAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 166 ga~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (505)
++++ ++++|++|+|+.|+||++||+||++++++|++++|++.++++ .| ++++++.++|..|+.|.+.||+++++.++
T Consensus 162 g~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~G-ld~~~l~~v~~~w~~G~~~S~l~e~~~~~ 240 (484)
T 4gwg_A 162 AAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-MAQDEMAQAFEDWNKTELDSFLIEITANI 240 (484)
T ss_dssp SCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred cCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHcCCCccchHHHHHHHH
Confidence 9988 678899999999999999999999999999999999999999 77 99999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccccccc
Q 010652 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGV 323 (505)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 323 (505)
+..+| +++++++|.|+|.++|||||+||+++|.++|||+|+|.+||++|++|++|++|..+++.+++|... .+
T Consensus 241 l~~~D-~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~~a~~~l~~~~~~------~~ 313 (484)
T 4gwg_A 241 LKFQD-TDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF------QF 313 (484)
T ss_dssp HHCBC-TTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHTTCCCC--C------CC
T ss_pred HhcCC-ccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHHHHHhhcCCCCcc------cc
Confidence 98755 457799999999999999999999999999999999999999999999999999999999887421 23
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcch
Q 010652 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 324 ~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
..++.+|+++|||||||++|++|+|||+||+++|++|+|+||+.+|++|||+||||||.||++|.++|++||+++|||+|
T Consensus 314 ~~~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~ll~~ 393 (484)
T 4gwg_A 314 DGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLD 393 (484)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCSCGGGS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCchhhhcC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCC-cccccccCC
Q 010652 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTEWTKL 482 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~-~~h~~w~~~ 482 (505)
|.|.+.+++.+++||+||..|++.|+|+|++|+||+|||+||++++|+|||||||||||+|||+|+|++| +|||+|++.
T Consensus 394 ~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~~~lpanliqaqRd~FGaH~~~r~d~~g~~~h~~w~~~ 473 (484)
T 4gwg_A 394 DFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 473 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHCCCEEETTEEEEEECCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhCCcceEecCCCCCccccCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 589999864
Q ss_pred CCc
Q 010652 483 PAR 485 (505)
Q Consensus 483 ~~~ 485 (505)
+..
T Consensus 474 ~~~ 476 (484)
T 4gwg_A 474 GGT 476 (484)
T ss_dssp ---
T ss_pred CCC
Confidence 433
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-106 Score=865.03 Aligned_cols=468 Identities=49% Similarity=0.865 Sum_probs=436.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-hhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-RAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~-~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|..+|||||+|.||.+||.+|+++||+|++|||++++++++.+ ..... ++..+.+++++++.++++|+||+|||++
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~ 85 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK---SIIGATSIEDFISKLKRPRKVMLLVKAG 85 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTS---SEECCSSHHHHHHTSCSSCEEEECCCSS
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCC---CeEEeCCHHHHHhcCCCCCEEEEEcCCh
Confidence 4568999999999999999999999999999999999998876 21101 4677889999998887899999999998
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHH
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~ 163 (505)
.+++++++++.+.+++|++|||+||+.+.++.++.+.+.++|++|+++||+|+++++..|+++|+||+++++++++++|+
T Consensus 86 ~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im~gg~~e~~~~v~~ll~ 165 (497)
T 2p4q_A 86 APVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQ 165 (497)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEEecCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 164 ~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
.++.+.++++|+.++|+.|+|+++||++|+++++++++++|++.++++ .| ++++++.+++..|+.|.+.||+++++.+
T Consensus 166 ~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~~~~~w~~g~~~S~l~~~~~~ 244 (497)
T 2p4q_A 166 SISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGG-FTDKEISDVFAKWNNGVLDSFLVEITRD 244 (497)
T ss_dssp HHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTTTTCBHHHHHHHH
T ss_pred HhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 999764555779999999999999999999999999999999999999 58 9999999999999999999999999998
Q ss_pred hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccc
Q 010652 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVG 322 (505)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~ 322 (505)
++.+++ +++.|.++.++|.++|||||+|+++.|.++|+|+|++.++|++|++|.+|++|..+++.+++|.... .
T Consensus 245 ~l~~~d-~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~gp~~~~-----~ 318 (497)
T 2p4q_A 245 ILKFDD-VDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVPK-----D 318 (497)
T ss_dssp HHTCBC-TTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCT-----T
T ss_pred HHhcCC-CCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHHHhhhcCCCCccc-----c
Confidence 877644 6667999999999999999999999999999999999999999999999999999999998875200 2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcc
Q 010652 323 VHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV 402 (505)
Q Consensus 323 ~~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~ 402 (505)
++.+++||+|||||||||++|++|+|||+||+++|++|+|+||+.+|++|||+||||||+||+.|.++|+++|+++|||+
T Consensus 319 ~~~~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~ 398 (497)
T 2p4q_A 319 AVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLF 398 (497)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGGG
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhhc
Confidence 33478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCcccccc--------CCCCc
Q 010652 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERI--------DRPGS 474 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~--------d~~~~ 474 (505)
||+|.+.+++.+++|||||.+|++.|+|+|++|+||+|||+||++++|+|||||||||||+|||+|+ |++|+
T Consensus 399 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~a~liqa~Rd~FG~H~~~r~~~~~~~~~~~~~~ 478 (497)
T 2p4q_A 399 NKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKD 478 (497)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHSCCCBCCCGGGCCSSSCTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhHHHHHHHHhcCCcceeeccccccccCCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCC
Q 010652 475 FHTEWTKL 482 (505)
Q Consensus 475 ~h~~w~~~ 482 (505)
|||+|++.
T Consensus 479 ~h~~w~~~ 486 (497)
T 2p4q_A 479 IHINWTGH 486 (497)
T ss_dssp BCCCCC--
T ss_pred eecccCCC
Confidence 99999764
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-105 Score=856.60 Aligned_cols=464 Identities=50% Similarity=0.860 Sum_probs=435.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||.+||.+|+++|++|++|||++++++++.+..... ++..+.++++++++++++|+||+|||++.+
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 91 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVKEFVESLETPRRILLMVKAGAG 91 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTS---CEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCC---CeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence 56899999999999999999999999999999999999887652111 367788999999877779999999999888
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~i 165 (505)
++++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++||+.+++.|+++|+||++++++.++++|+.+
T Consensus 92 v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~ 171 (480)
T 2zyd_A 92 TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKI 171 (480)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEEecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998988899999999999999999999999999999999999999999
Q ss_pred hccc-CCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhhHhhhhhh
Q 010652 166 AAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 166 ga~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (505)
+.+. +|++|+.++|+.|+|+++||++|+++++++++++|++.++++ .| ++++++.+++..|+.|.+.|++++++.++
T Consensus 172 g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~l~~~w~~g~~~s~l~~~~~~~ 250 (480)
T 2zyd_A 172 AAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLN-LTNEELAQTFTEWNNGELSSYLIDITKDI 250 (480)
T ss_dssp SCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTTCBHHHHHHHHH
T ss_pred hccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 9764 577889999999999999999999999999999999999999 68 99999999999999999999999999998
Q ss_pred cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccccccc
Q 010652 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGV 323 (505)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 323 (505)
++.++ +++++.++.++|.++|||||+|+.+.|.++|+|+|++.+++++|++|..|++|..+++.+++|.. .+
T Consensus 251 l~~~d-~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R~~~~~~~~g~~~-------~~ 322 (480)
T 2zyd_A 251 FTKKD-EDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQA-------QP 322 (480)
T ss_dssp HHCBC-TTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHHHHHHTTCCCCCC-------CC
T ss_pred HhcCC-CCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHHHHHHhhhcchhhhHHhhcccCCCCC-------CC
Confidence 87644 66779999999999999999999999999999999999999999999999999999999988752 23
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcch
Q 010652 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 324 ~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
+.+++||+|||||||||++|++|+|||+||+++|++|+|+||+.+|+++||+||||||+||+.|.++|+++|+++|||+|
T Consensus 323 ~~~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~ 402 (480)
T 2zyd_A 323 AGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLA 402 (480)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGGS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCcccccccC
Q 010652 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
|+|.+.+++.+++|||||.+|++.|+|+|++|+||+|||+||++++|+|||||||||||+|||+|+|++|+|||+|++
T Consensus 403 ~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~~l~qa~Rd~FG~H~~~r~~~~~~~h~~w~~ 480 (480)
T 2zyd_A 403 PYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD 480 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSCSCBCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCCcceecCCCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999963
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-104 Score=844.91 Aligned_cols=465 Identities=50% Similarity=0.863 Sum_probs=434.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||.+||.+|+++|++|++|||++++++++.+..... ++..+.+++++++.++++|+||+|||++.+
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVilavp~~~~ 81 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDK---NLVFTKTLEEFVGSLEKPRRIMLMVQAGAA 81 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS---CEEECSSHHHHHHTBCSSCEEEECCCTTHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCC---CeEEeCCHHHHHhhccCCCEEEEEccCchH
Confidence 36899999999999999999999999999999999999887652111 367788999999877779999999999888
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~i 165 (505)
++++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++|+++++..|+++|+||++++++.++++|+.+
T Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~ 161 (474)
T 2iz1_A 82 TDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQI 161 (474)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEEecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888899999999999999999999899999999999999999999
Q ss_pred hccc--CCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 166 AAQV--DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 166 ga~~--~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ ++++|+.++|+.|+|+++||++|+++++.+++++|++.++++ .| ++++++.+++..|+.|.+.||+++++.+
T Consensus 162 g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~G-l~~~~~~~l~~~w~~g~~~s~l~~~~~~ 240 (474)
T 2iz1_A 162 AAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILG-LSNAEIQAIFEEWNEGELDSYLIEITKE 240 (474)
T ss_dssp SCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred hcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccccHHHhhhh
Confidence 9874 677888999999999999999999999999999999999999 68 9999999999999999999999999999
Q ss_pred hcccccccCCc-hhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccccc
Q 010652 243 IFKVKDEYGEG-ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNV 321 (505)
Q Consensus 243 ~l~~~~~~~~~-~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~ 321 (505)
++..+| +.++ +.++.++|.++|||||+|+++.|.++|+|+|++.+++++|++|.+|++|..+++.+++|..
T Consensus 241 ~l~~~d-~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~g~~~------- 312 (474)
T 2iz1_A 241 VLKRKD-DEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPAL------- 312 (474)
T ss_dssp HTTCBC-SSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC-------
T ss_pred HhhcCC-CCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhHHhhhccCCCCC-------
Confidence 876544 5444 9999999999999999999999999999999999999999999999999999999988852
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCc
Q 010652 322 GVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLV 401 (505)
Q Consensus 322 ~~~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll 401 (505)
.+..+++||+|||||||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||
T Consensus 313 ~~~~~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~ 392 (474)
T 2iz1_A 313 DFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLL 392 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCGG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhhh
Confidence 23357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCcccccccC
Q 010652 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
+||+|.+.+++.+++|||+|.+|++.|+|+|++|+||+|||+||++++|+|||||||||||+|||+|+|++|+|||+|++
T Consensus 393 ~~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fg~h~~~r~~~~~~~h~~w~~ 472 (474)
T 2iz1_A 393 LDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 472 (474)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSSSCBCCCCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCccceecCCCCeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C
Q 010652 482 L 482 (505)
Q Consensus 482 ~ 482 (505)
+
T Consensus 473 ~ 473 (474)
T 2iz1_A 473 E 473 (474)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-103 Score=836.04 Aligned_cols=466 Identities=51% Similarity=0.864 Sum_probs=434.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-hhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-RAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~-~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|||||+|.||.+||.+|+++||+|++|||++++++++.+ ..... ++..+.+++++++.++.+|+||+|||++.+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~---gi~~~~~~~e~v~~l~~aDvVilaVp~~~~ 79 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT---KVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS---SCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCC---CeEEeCCHHHHHhhccCCCEEEEeCCChHH
Confidence 68999999999999999999999999999999999998876 21101 367788999999755569999999999878
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~i 165 (505)
++++++++.+.+.+|++|||++|+.+.++.++.+.+.++|++|+++|++|+++++..|+++|+||++++++.++++|+.+
T Consensus 80 v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~ 159 (482)
T 2pgd_A 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (482)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888888888899999999999999999999889999999999999999999
Q ss_pred hccc-CCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhccCCcchhhHhhhhhh
Q 010652 166 AAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 166 ga~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~-g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (505)
+.++ ++++|+.++|+.|+|+++||++|+++++.+++++|++.++++. | ++++++.+++..|+.+.+.|++++++.++
T Consensus 160 g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G-~~~~~~~~~~~~w~~g~~~S~l~~~~~~~ 238 (482)
T 2pgd_A 160 AAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-LGHKEMAKAFEEWNKTELDSFLIEITASI 238 (482)
T ss_dssp SCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred hhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence 9876 5667889999999999999999999999999999999999999 8 99999999999999999999999999887
Q ss_pred cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccccccc
Q 010652 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGV 323 (505)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 323 (505)
+..+ ++++++.++.++|.++|||||+|+++.|+++|+|+|++.+++++|+.|.+|++|..+++.+++|... .+
T Consensus 239 l~~~-d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~~~~~~~~g~~~~------~~ 311 (482)
T 2pgd_A 239 LKFQ-DADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI------PF 311 (482)
T ss_dssp HHCB-CTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC------CC
T ss_pred hhcc-CCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHHHHhhhcCCCCcc------cc
Confidence 7764 4677799999999999999999999999999999999998899999999999999999999888521 23
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcch
Q 010652 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 324 ~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
..+++||+|||||||||++|++|+|||+||+++|++|+|+||+.+|++|||+||||||+||+.|.++|+++|+++||++|
T Consensus 312 ~~~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~ 391 (482)
T 2pgd_A 312 EGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLD 391 (482)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGS
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChhhhhcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCC-cccccccCC
Q 010652 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTEWTKL 482 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~-~~h~~w~~~ 482 (505)
+.|.+.+++.+++|||||.+|++.|+|+|++|+||+|||+||++++|+|||||||||||+|||+|+|++| .|||+|++.
T Consensus 392 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fG~h~~~r~~~~~~~~h~~w~~~ 471 (482)
T 2pgd_A 392 DFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 471 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCcchhHHHHHHhhcCCceeeecCCCCCceecccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999764
Q ss_pred C
Q 010652 483 P 483 (505)
Q Consensus 483 ~ 483 (505)
+
T Consensus 472 ~ 472 (482)
T 2pgd_A 472 G 472 (482)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-101 Score=822.07 Aligned_cols=462 Identities=36% Similarity=0.651 Sum_probs=429.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc----ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH----REGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~----~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||||+|.||.+||.+|+++|++|++|||++++++++.+... .. ++..+.++++++++++++|+||+|||+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~---~i~~~~~~~e~v~~l~~aDvVilaVp~ 78 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAG---NLKAFETMEAFAASLKKPRKALILVQA 78 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGG---GEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCC---CeEEECCHHHHHhcccCCCEEEEecCC
Confidence 58999999999999999999999999999999999998876521 11 267788999999877779999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll 162 (505)
+.+++++++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++++++.|+++|+||++++++.++++|
T Consensus 79 ~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll 158 (478)
T 1pgj_A 79 GAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIV 158 (478)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEeccCCHHHHHHHHHHH
Confidence 87899999999999999999999999999999888888888899999999999999999999889999999999999999
Q ss_pred HHhhccc-CCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhc-cCCcchhhHhhh
Q 010652 163 QKVAAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWN-KGELESFLVEIT 240 (505)
Q Consensus 163 ~~iga~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~-~g~~~s~l~~~~ 240 (505)
+.++.+. ++++|+.++|+.|+|+++||++|+++++.+++++|++.++++.| ++++++.+++..|+ .|.+.|++++++
T Consensus 159 ~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G-~~~~~~~~l~~~w~~~g~~~s~l~~~~ 237 (478)
T 1pgj_A 159 EAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 237 (478)
T ss_dssp HHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHH
T ss_pred HHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCCCcCchHHHhh
Confidence 9999764 45678999999999999999999999999999999999999888 99999999999999 899999999999
Q ss_pred hhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCC-ccccc
Q 010652 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGL-KDEVQ 319 (505)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~-~~~~~ 319 (505)
.+++..+| +.+.+.+|.++|.++|||||+|+++.|+++|+|+|++.++|++|++|..|++|..+++.+++|.. .
T Consensus 238 ~~~l~~~d-~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~~~~---- 312 (478)
T 1pgj_A 238 IAAARAKD-KDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSP---- 312 (478)
T ss_dssp HHHHHCBC-TTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCC----
T ss_pred chhhhcCC-CCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCCccc----
Confidence 98886544 54448999999999999999999999999999999999999999999999999999999988742 1
Q ss_pred ccccc-cch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCC
Q 010652 320 NVGVH-VDK---KRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP 395 (505)
Q Consensus 320 ~~~~~-~~~---~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~ 395 (505)
.+. .++ ..|+++|++|+|+++|++|+|||+||+++|++|+|+||+.+|++|||+||||||.||++|.++|+++|
T Consensus 313 --~~~~~~~~~~~~~~~~~~~al~~~~~~~yaqg~~~~~~a~~~~~w~l~~~~~a~~wr~gciir~~~l~~i~~a~~~~~ 390 (478)
T 1pgj_A 313 --GYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNP 390 (478)
T ss_dssp --CCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCT
T ss_pred --ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCceeeHHHHHHHHHHHhcCC
Confidence 122 355 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHhHHHHhhhhHHHHHHHH-HHHcCCChHHHHHHHHHHHhhccCChh-hhHHHHHhhhhcCccccccCCCC
Q 010652 396 NLASLVVDPEFAREMVQRQAAWRRVVGL-AISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPG 473 (505)
Q Consensus 396 ~~~~ll~~~~~~~~~~~~~~~~r~~v~~-a~~~gvp~P~~saal~y~~~~~~~~~~-a~liqaqRd~FG~H~~~r~d~~~ 473 (505)
++.||| +.|.+.+++.+++||++|.. |++.|+|+|++|+||+|||+||+++|| +|||||||||||||||||+|++|
T Consensus 391 ~~~~l~--~~~~~~~~~~~~~~r~~v~~~~~~~g~~~p~~~~~l~y~d~~~~~~l~~~~l~qaqrd~fg~h~~~~~~~~~ 468 (478)
T 1pgj_A 391 NISNLM--CAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDG 468 (478)
T ss_dssp TCSCTT--GGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSS
T ss_pred ChhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccccCCcchhHHHHHHhccCceeeecCCCC
Confidence 999999 89999999999999999999 999999999999999999999999999 99999999999999999999999
Q ss_pred cccccccC
Q 010652 474 SFHTEWTK 481 (505)
Q Consensus 474 ~~h~~w~~ 481 (505)
+|||+|++
T Consensus 469 ~~h~~w~~ 476 (478)
T 1pgj_A 469 RESFQWPE 476 (478)
T ss_dssp EECCCCCC
T ss_pred ceecCCCC
Confidence 99999975
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=438.27 Aligned_cols=320 Identities=27% Similarity=0.482 Sum_probs=264.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ +..+.+++++++..+.+|+||+|||++ +
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~a~~~DvVi~~vp~~-~ 93 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREG-------IAGARSIEEFCAKLVKPRVVWLMVPAA-V 93 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CBCCSSHHHHHHHSCSSCEEEECSCGG-G
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CEEeCCHHHHHhcCCCCCEEEEeCCHH-H
Confidence 37899999999999999999999999999999999999887653 466789999999844459999999998 8
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~i 165 (505)
++++++++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++||+||+++++.|+++|+||+++++++++++|+.+
T Consensus 94 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG~~~a~~~~~~ll~~l 173 (358)
T 4e21_A 94 VDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTL 173 (358)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEESCHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--------------CcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCC
Q 010652 166 AAQVDDG--------------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE 231 (505)
Q Consensus 166 ga~~~~~--------------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~ 231 (505)
+++.++. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| +...
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~-~~~~------------- 239 (358)
T 4e21_A 174 APGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHAN-AGKE------------- 239 (358)
T ss_dssp SCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CC---------------
T ss_pred ccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc-------------
Confidence 9653211 37999999999999999999999999999999999999875 2110
Q ss_pred cchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhcc
Q 010652 232 LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKE 311 (505)
Q Consensus 232 ~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~ 311 (505)
. . . . ++ . . .
T Consensus 240 -------------~--~---------~-~-~~-------------~----------~----------------------~ 248 (358)
T 4e21_A 240 -------------G--Q---------G-A-DA-------------E----------T----------------------A 248 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------c--c---------c-c-cc-------------c----------c----------------------c
Confidence 0 0 0 0 00 0 0 0
Q ss_pred CCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHH
Q 010652 312 AGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAY 391 (505)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~ 391 (505)
| . +.+++|+|++|+++|+++||+||+|+|+||+.+..+|
T Consensus 249 ~-~----------------------------------------~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~ 287 (358)
T 4e21_A 249 P-L----------------------------------------RNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATAL 287 (358)
T ss_dssp --------------------------------------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHH
T ss_pred c-c----------------------------------------ccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 1 0 0157899999999999999999999999999999999
Q ss_pred hcCCCCCCCcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH-HHHhhccCChhh-hHHHHHhhhhcCcccc
Q 010652 392 QRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS-YFDTYRRARLPA-NLVQAQRDLFGAHTYE 467 (505)
Q Consensus 392 ~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~-y~~~~~~~~~~a-~liqaqRd~FG~H~~~ 467 (505)
+++|.++++. +.+.+ ++++ ||++..|.+.|+|+|++++||+ +|++ +.+++++ |++||||||||+|+++
T Consensus 288 ~~~p~~~~~~--~~~~d---~g~~--r~~~~~A~~~gvp~p~~~~al~~~~~s-~~~~~~~~~l~~a~r~~fG~h~~~ 357 (358)
T 4e21_A 288 LDSPDLQEFQ--GRVSD---SGEG--RWTVAAAIDEGVPAHVLSSALYERFSS-RGEDDFANRLLSAMRYEFGGHREK 357 (358)
T ss_dssp HHCTTCTTC----CCCC---CSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHH-TTTTHHHHHHHHHHC---------
T ss_pred hhCCChHHHH--HHHHh---cCcH--HHHHHHHHHcCCChHHHHHHHHHHHHH-CCCcccHHHHHHHHHHhcCCCCCC
Confidence 9988765432 22222 4444 9999999999999999999998 5666 7888885 6999999999999975
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=382.93 Aligned_cols=264 Identities=23% Similarity=0.330 Sum_probs=240.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+||||||+|.||.+||+||+++||+|++|||++++++.+.+.+ .+.+.|++|+++. +|+||+|||++++
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~a~s~~e~~~~---~dvv~~~l~~~~~ 72 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 72 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTT---CSEEEECCSCHHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCceeecCCchHH
Confidence 35899999999999999999999999999999999999998765 4788999999998 9999999999999
Q ss_pred HHHHHH---HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 86 VDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~---~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
+++|+. .+.+.+.+|++|||+||+.|.+++++.+.++++|++|+|+|||||+.+|+.|+ ++|+||+++++++++|+
T Consensus 73 v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~ 152 (300)
T 3obb_A 73 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 152 (300)
T ss_dssp HHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 999984 47888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhh
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ +.++|+|+.|+|+.+|++||.+.++.+++++|++.++++.| +|++.+.+++ +.+...||.++.+.
T Consensus 153 l~~~g------~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~ 222 (300)
T 3obb_A 153 FEAMG------RNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVYN 222 (300)
T ss_dssp HHHHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHCC
T ss_pred HHHhC------CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHH---HhCcccchHHHhhc
Confidence 99999 78999999999999999999999999999999999999999 9999999986 67778899988776
Q ss_pred hhcc------cccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 242 DIFK------VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 242 ~~l~------~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
+... ..++|+++|.++.+.||++ ++.++|+++|+|+|+...+ .++|.+
T Consensus 223 p~~~~~~~~~~~~~~~~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~a-~~~~~~ 276 (300)
T 3obb_A 223 PWPGVMENAPASRDYSGGFMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRL 276 (300)
T ss_dssp CSTTTSTTSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred cccchhhhccccccCCccchHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 5321 1246889999999999996 8999999999999998875 455544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=370.97 Aligned_cols=266 Identities=18% Similarity=0.252 Sum_probs=234.6
Q ss_pred cCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 4 ~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.|..||||||+|.||.+||+||+++||+|++|||++++++++.+.+ .+.+.|++|+++. +|+||+|+|++
T Consensus 3 ~Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------~~~~~s~~e~~~~---~dvvi~~l~~~ 72 (297)
T 4gbj_A 3 AMSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLG-------ATVVENAIDAITP---GGIVFSVLADD 72 (297)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTT-------CEECSSGGGGCCT---TCEEEECCSSH
T ss_pred CCCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-------CeEeCCHHHHHhc---CCceeeeccch
Confidence 3456899999999999999999999999999999999988877654 5778999999987 99999999998
Q ss_pred chHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 84 SPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 84 ~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
.++++++ ..+.+.+.+|++|||+||+.|.+++++.+.+.++|++|+|+||+||+.++..|+ ++|+||+++++++++|+
T Consensus 73 ~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~ 152 (297)
T 4gbj_A 73 AAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPI 152 (297)
T ss_dssp HHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHH
Confidence 8888776 678888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhhcccCCCCcEEEeCC-CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhh
Q 010652 162 LQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (505)
|+.++ +.++|+|+ .|+|+++|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.||+++.+
T Consensus 153 l~~~g------~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~ 222 (297)
T 4gbj_A 153 VENFV------KGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNG-ISRQSIYEML---TSTLFAAPIFQNY 222 (297)
T ss_dssp HHTTC------SEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTTTTCSHHHHHH
T ss_pred HHHhh------CCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccCchhhcc
Confidence 99999 78999985 799999999999999999999999999999999 9999998886 6788899999998
Q ss_pred hhhcccccccCC-chhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcc
Q 010652 241 ADIFKVKDEYGE-GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 241 ~~~l~~~~~~~~-~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~ 297 (505)
.+.+.. ++|.| +|.++.+.||++ ++.++|+++|+|+|+...+ .++|..+
T Consensus 223 ~~~~~~-~~~~p~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~~-~~~~~~a 272 (297)
T 4gbj_A 223 GKLVAS-NTYEPVAFRFPLGLKDIN------LTLQTASDVNAPMPFADII-RNRFISG 272 (297)
T ss_dssp HHHHHH-TCCCSCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred CccccC-CCCCCccchhHHHHHHHH------HHHHHHHHhCCCChHHHHH-HHHHHHH
Confidence 877765 45665 799999999996 8999999999999998765 5565443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=316.30 Aligned_cols=263 Identities=20% Similarity=0.302 Sum_probs=239.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||||+|.||.+||.+|+++||+|++|||++++++++.+.+ +..+.+++++++. +|+||+|||++.
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~ 89 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHG-------ASVCESPAEVIKK---CKYTIAMLSDPC 89 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHH
T ss_pred cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeEcCCHHHHHHh---CCEEEEEcCCHH
Confidence 457999999999999999999999999999999999999887643 5678899999988 999999999987
Q ss_pred hHHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010652 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ 160 (505)
++++++ +++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||++++++++++
T Consensus 90 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ 169 (310)
T 3doj_A 90 AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIP 169 (310)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHH
Confidence 899998 788899999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhh
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (505)
+|+.++ +.++++|+.|+|+++|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+...|++++..
T Consensus 170 ll~~~g------~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~~~ 239 (310)
T 3doj_A 170 AFDVLG------KRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSG-LSSDTLLDIL---DLGAMTNPMFKGK 239 (310)
T ss_dssp HHHHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHH---HHSTTCCHHHHHH
T ss_pred HHHHhC------CCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccccHHHHHH
Confidence 999999 78999999999999999999999999999999999999998 9999999987 4567788888887
Q ss_pred hhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 010652 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (505)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~ 295 (505)
.+.+.. ++|.++|.++.+.||++ .+.+.|+++|+|+|+..++ .+.|.
T Consensus 240 ~~~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~ 286 (310)
T 3doj_A 240 GPSMNK-SSYPPAFPLKHQQKDMR------LALALGDENAVSMPVAAAA-NEAFK 286 (310)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHH
T ss_pred hhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 766554 55888999999999986 8999999999999999865 44443
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=317.04 Aligned_cols=262 Identities=21% Similarity=0.293 Sum_probs=238.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|||||+|.||.++|.+|+++|++|++|||++++++++.+.+ +..+.+++++++. +|+||+|||++..
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~~ 100 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALG-------ATIHEQARAAARD---ADIVVSMLENGAV 100 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CEEESSHHHHHTT---CSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCC-------CEeeCCHHHHHhc---CCEEEEECCCHHH
Confidence 46899999999999999999999999999999999999887653 5778999999987 9999999999888
Q ss_pred HHHHHH--HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 86 VDQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 86 v~~vl~--~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
++.++. ++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++.++..|+ .+|+||+++++++++++|
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll 180 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLL 180 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHH
Confidence 999987 88889999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
+.+ . .++++|+.|+|+++|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+.+.||+++.+.+
T Consensus 181 ~~~-~------~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~~~~~ 249 (320)
T 4dll_A 181 KVF-G------RATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGG-ADMAKVKEAI---TGGFADSRVLQLHGQ 249 (320)
T ss_dssp HHH-E------EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHH---TTSTTCBHHHHTHHH
T ss_pred Hhc-C------CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcccccCHHHHHhhh
Confidence 999 4 4789999999999999999999999999999999999998 9999999987 667788999998877
Q ss_pred hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
.+.. ++|.++|.++.+.||+. ++++.|+++|+|+|+..++ .+.|..
T Consensus 250 ~~l~-~~~~~gf~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 295 (320)
T 4dll_A 250 RMVE-RDFAPRARLSIQLKDMR------NALATAQEIGFDAPITGLF-EQLYAE 295 (320)
T ss_dssp HHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred hhcc-CCCCCcccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 6655 45888999999999986 8999999999999999875 444433
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=310.53 Aligned_cols=260 Identities=18% Similarity=0.285 Sum_probs=238.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.++|.+|+++||+|++|||++++.+++.+.+ +..+.+++++++. +|+||+|||++..+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~~~ 71 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALG-------AERAATPCEVVES---CPVTFAMLADPAAA 71 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEcCCHHHH
Confidence 6899999999999999999999999999999999998887653 5778899999988 99999999987789
Q ss_pred HHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
++++ +++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|
T Consensus 72 ~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 151 (287)
T 3pef_A 72 EEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGF 151 (287)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 9999 889999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ .+++++|+.|.|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+.+.|++++...+
T Consensus 152 ~~~g------~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~~~~~ 221 (287)
T 3pef_A 152 EKMG------KKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAG-LATDAILDVI---GAGAMANPMFALKGG 221 (287)
T ss_dssp HHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HHSTTCCHHHHHHHH
T ss_pred HHhC------CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccccHHHHHHhh
Confidence 9999 67999999999999999999999999999999999999999 9999999987 456678999988877
Q ss_pred hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHH
Q 010652 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRY 294 (505)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~ 294 (505)
.+.. ++|.++|.++...||+. ++++.|+++|+|+|++.++ .+.|
T Consensus 222 ~~~~-~~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~ 265 (287)
T 3pef_A 222 LIRD-RNFAPAFPLKHMQKDLR------LAVALGDRVGQPLVASAAA-NELF 265 (287)
T ss_dssp HHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHH
T ss_pred hhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHH
Confidence 6655 45788999999999985 8999999999999999875 4444
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=313.56 Aligned_cols=262 Identities=18% Similarity=0.200 Sum_probs=231.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||.++|.+|+++||+|++|||++++++++.+.+ ++.+++++++++ +|+||+|||++.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~----aDvvi~~vp~~~~ 83 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAG-------ATLADSVADVAA----ADLIHITVLDDAQ 83 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTT-------CEECSSHHHHTT----SSEEEECCSSHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CEEcCCHHHHHh----CCEEEEECCChHH
Confidence 46899999999999999999999999999999999998887653 567889998876 8999999999888
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQK 164 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~~ 164 (505)
++++++++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|+++.+..|+ .+++||+++++++++++|+.
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 163 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKH 163 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH---hccCCcchhhHhhhh
Q 010652 165 VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE---WNKGELESFLVEITA 241 (505)
Q Consensus 165 iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~---~~~g~~~s~l~~~~~ 241 (505)
++ +.++++|+.|+|+++|+++|.+.++.+++++|++.++++.| ++++++.++|.. .+.+.+.||+.+ ..
T Consensus 164 ~g------~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~~~~~i~~~~~~s~~~~-~~ 235 (296)
T 3qha_A 164 WA------AVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG-LDLQALGRVVRHTDALTGGPGAIMVRD-NM 235 (296)
T ss_dssp HE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHCCGGGGCCCS-SC
T ss_pred Hc------CCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHhhhcchHHHHhcCcccCHHhh-ch
Confidence 99 67999999999999999999999999999999999999999 999999333222 256777787666 33
Q ss_pred hhcccccccCCchhH-----HHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 242 DIFKVKDEYGEGELV-----DKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 242 ~~l~~~~~~~~~~~l-----d~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
.++. + |.++|.+ +.+.||++ .+.+.|.++|+|+|++..+ .+.|..
T Consensus 236 ~~~~--~-~~~~f~~~~~~~~~~~KD~~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 285 (296)
T 3qha_A 236 KDLE--P-DNFLYQPFLHTRGLGEKDLS------LALALGEAVSVDLPLARLA-YEGLAA 285 (296)
T ss_dssp SCCC--T-TSTTHHHHHHHHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred hhhh--c-CCCCCchhhhhhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 3433 3 6788999 99999985 8889999999999999875 455544
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=311.05 Aligned_cols=260 Identities=18% Similarity=0.265 Sum_probs=237.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.++|.+|+++||+|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|||++.++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---advvi~~v~~~~~~ 71 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALG-------ARQASSPAEVCAA---CDITIAMLADPAAA 71 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHT-------CEECSCHHHHHHH---CSEEEECCSSHHHH
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHHc---CCEEEEEcCCHHHH
Confidence 6899999999999999999999999999999999999887653 5678899999988 99999999997789
Q ss_pred HHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
++++ +++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|
T Consensus 72 ~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 151 (287)
T 3pdu_A 72 REVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAF 151 (287)
T ss_dssp HHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHH
T ss_pred HHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 9998 788899999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ ++++++|+.|+|+++|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+.+.|++++...+
T Consensus 152 ~~~g------~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~~~ 221 (287)
T 3pdu_A 152 AALG------KKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCG-LDGGQLLEVL---DAGAMANPMFKGKGQ 221 (287)
T ss_dssp HHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HHSTTCCHHHHHHHH
T ss_pred HHhC------CCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhccccChHHHhhcc
Confidence 9999 78999999999999999999999999999999999999999 9999999997 456678899888876
Q ss_pred hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHH
Q 010652 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRY 294 (505)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~ 294 (505)
.+.. ++|.++|.++...||++ ++.+.|+++|+|+|+..++ .+.+
T Consensus 222 ~~~~-~~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~ 265 (287)
T 3pdu_A 222 MLLS-GEFPTSFPLKHMQKDLR------LAVELGDRLGQPLHGAATA-NESF 265 (287)
T ss_dssp HHHH-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHH
T ss_pred cccc-CCCCCCCcHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHH
Confidence 6655 45788899999999985 8999999999999999865 4443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=310.71 Aligned_cols=262 Identities=20% Similarity=0.293 Sum_probs=235.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEecCCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ ... +.+++++++. +|+||+|||++
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~e~~~~---aDvvi~~vp~~ 75 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEG-------ACGAAASAREFAGV---VDALVILVVNA 75 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CSEEESSSTTTTTT---CSEEEECCSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC-------CccccCCHHHHHhc---CCEEEEECCCH
Confidence 457899999999999999999999999999999999999888754 234 7888888877 99999999998
Q ss_pred chHHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010652 84 SPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 84 ~~v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~ 159 (505)
..++.++ +++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++
T Consensus 76 ~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 155 (303)
T 3g0o_A 76 AQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLK 155 (303)
T ss_dssp HHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred HHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHH
Confidence 7888888 788899999999999999999999999999988999999999999999999999 999999999999999
Q ss_pred HHHHHhhcccCCCCcEEEeCC-CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHh
Q 010652 160 DILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~ 238 (505)
++|+.++ +.++++|+ .|+|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+...|++++
T Consensus 156 ~ll~~~g------~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~ 225 (303)
T 3g0o_A 156 PVLDAVA------SNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAG-IPLDVMYDVV---THAAGNSWMFE 225 (303)
T ss_dssp HHHHHHE------EEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHH
T ss_pred HHHHHHC------CCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccCCHHHH
Confidence 9999999 78999998 899999999999999999999999999999998 9999999987 55777899988
Q ss_pred hhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHH
Q 010652 239 ITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRY 294 (505)
Q Consensus 239 ~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~ 294 (505)
...+.+.. ++|.++|.++.+.||+. ++++.|+++|+|+|++.++ .+.+
T Consensus 226 ~~~~~~~~-~~~~~~~~~~~~~kD~~------~~~~~a~~~g~~~p~~~~~-~~~~ 273 (303)
T 3g0o_A 226 NRMQHVVD-GDYTPRSAVDIFVKDLG------LVADTAKALRFPLPLASTA-LNMF 273 (303)
T ss_dssp HHHHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHH
T ss_pred hhhHHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHH
Confidence 87765544 55788899999999986 8999999999999999865 4444
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=295.64 Aligned_cols=261 Identities=14% Similarity=0.134 Sum_probs=225.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ +..+.+++++++. +|+||+|||++.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~ 77 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAG-------AHLCESVKAALSA---SPATIFVLLDNH 77 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT-------CEECSSHHHHHHH---SSEEEECCSSHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEeCCHH
Confidence 357899999999999999999999999999999999999888754 4677899999988 999999999987
Q ss_pred hHHHHHH--HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 85 PVDQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 85 ~v~~vl~--~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
++++++. .+.+ +.+|++|||+||+.|.+++++.+.+.++|++|+++||+|+++.+..+. .+|+||+++++++++++
T Consensus 78 ~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~l 156 (306)
T 3l6d_A 78 ATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRAL 156 (306)
T ss_dssp HHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHH
T ss_pred HHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHH
Confidence 7898886 6644 568999999999999999999999999999999999999987776666 89999999999999999
Q ss_pred HHHhhcccCCCCcEEEe--CC-CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHh
Q 010652 162 LQKVAAQVDDGPCVTYI--GE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~--G~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~ 238 (505)
|+.++ ..++++ |+ .|+|+.+| .+.++.+++++|++.++++.| +|++++.+++..+.. .+.|++++
T Consensus 157 l~~lg------~~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~~~~~~-~~~s~~~~ 224 (306)
T 3l6d_A 157 LEGLA------GHTVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFG-LPVSKTARLLLETSR-FFVADALE 224 (306)
T ss_dssp HHTTC------SEEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHhc------CCEEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhh-hcccHHHH
Confidence 99998 679999 87 79999999 566788999999999999999 999999999854310 15788888
Q ss_pred hhhhhcccccccCCc-hhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 239 ITADIFKVKDEYGEG-ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 239 ~~~~~l~~~~~~~~~-~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
.+.+.+.. ++|+++ |.++.+.||+. ++++.|+++|+|+|+..++ .+.|..
T Consensus 225 ~~~~~~~~-~~~~~~~~~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 275 (306)
T 3l6d_A 225 EAVRRLET-QDFKGDQARLDVHADAFA------HIAQSLHAQGVWTPVFDAV-CQVVQR 275 (306)
T ss_dssp HHHHHHHH-TCCCTTSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred HHHHHHhc-CCCCCCcccHHHHHHHHH------HHHHHHHHcCCCchHHHHH-HHHHHH
Confidence 87766654 457764 78999999986 8999999999999999865 455443
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=279.86 Aligned_cols=252 Identities=13% Similarity=0.105 Sum_probs=210.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC--hhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT--TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~--~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+|+|||||+|.||.+||.+|+++|| +|++|||+ +++.+.+.+.+ +..+.+++++++. +|+||+|||+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~ 93 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELG-------VSCKASVAEVAGE---CDVIFSLVTA 93 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTT-------CEECSCHHHHHHH---CSEEEECSCT
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCC-------CEEeCCHHHHHhc---CCEEEEecCc
Confidence 5799999999999999999999999 99999997 57777666543 5678899999988 9999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--CCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~ 159 (505)
+.. .++++++.+.+.++++|||+||+.|.+++++.+.+.++ |++|+++|++|++..+ .|+ .+++||+++ ++++
T Consensus 94 ~~~-~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~~ 169 (312)
T 3qsg_A 94 QAA-LEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRFQ 169 (312)
T ss_dssp TTH-HHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHHH
T ss_pred hhH-HHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChH--HHHH
Confidence 754 45779999999999999999999999999999999888 9999999999987654 566 899999887 8999
Q ss_pred HHHHHhhcccCCCCcEEEeCC-CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHh
Q 010652 160 DILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~ 238 (505)
++|+.++ +.++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| +++ ++.+.+. .+. .++.++
T Consensus 170 ~ll~~~g------~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~-~~~~~l~---~~~-~~~~~~ 237 (312)
T 3qsg_A 170 AAFTLYG------CRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMG-LAD-RVLASLD---ASF-PEHHLR 237 (312)
T ss_dssp HHHHTTT------CEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHH-HHHHHHH---HHS-GGGTHH
T ss_pred HHHHHhC------CCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCH-HHHHHHH---hcC-CchhHH
Confidence 9999999 78999998 899999999999999999999999999999999 998 5666663 322 244445
Q ss_pred hhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHH
Q 010652 239 ITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRY 294 (505)
Q Consensus 239 ~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~ 294 (505)
...+.+.. ++|.++|.+ .||++ .+++.|+++|+|+|++.++ .+.|
T Consensus 238 ~~~~~~~~-~~~~~g~~~---~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~ 282 (312)
T 3qsg_A 238 DLALYLVE-RNLEHADRR---AHELG------EVAATLCSVGVEPLVAEAG-YRRL 282 (312)
T ss_dssp HHHHHHHH-HHHHHHHHH---HHHHH------HHHHHHHHTTCCCHHHHHH-HHHH
T ss_pred HhhhHhhc-CCCCcccch---HHHHH------HHHHHHHHcCCCcHHHHHH-HHHH
Confidence 44444433 346666665 56664 7899999999999999865 4443
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=271.13 Aligned_cols=258 Identities=21% Similarity=0.321 Sum_probs=224.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+|+|+|||+|.||..++.+|+++|++|.+|||++++.+.+.+.+ +..+.+++++++. +|+||+++|++.
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~v~~~~ 73 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSP 73 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHH
T ss_pred ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCHH
Confidence 457999999999999999999999999999999999988877653 4667899998887 999999999877
Q ss_pred hHHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010652 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ 160 (505)
.++.++ +++.+.+.+|.+||++++..+.+.+++.+.+.+.|++|+++|+++++.++..+. .+++||+++.++.+++
T Consensus 74 ~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T 1vpd_A 74 HVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYD 153 (299)
T ss_dssp HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHH
Confidence 788888 678888999999999999998888888888888899999999999988888887 8888999999999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhh
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (505)
+|+.++ ..++++++.|+|.++|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+...++.+..+
T Consensus 154 ll~~~g------~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~ 223 (299)
T 1vpd_A 154 LMKAMA------GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 223 (299)
T ss_dssp HHHTTE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHH
T ss_pred HHHHHc------CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HccCCCCHHHHHh
Confidence 999999 67889999999999999999999999999999999999998 9999988876 4555667766654
Q ss_pred hhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
.+.+.. +++.+++.++.+.++++ ++++.|+++|+|+|+..++
T Consensus 224 ~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~ 265 (299)
T 1vpd_A 224 APMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAQLPLTAAV 265 (299)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH
T ss_pred hhHhhc-CCCCCCCChHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 444433 44677789999888875 8999999999999998864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=278.38 Aligned_cols=253 Identities=13% Similarity=0.122 Sum_probs=204.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCCh-------hHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTT-------SKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRS 75 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~-------~~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~adv 75 (505)
|+|+|||||+|.||.++|.+|+++| ++|++|||++ +..+++.+. ++ +. +++++++. +|+
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~-------g~--~~~s~~e~~~~---aDv 90 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAEL-------GV--EPLDDVAGIAC---ADV 90 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHT-------TC--EEESSGGGGGG---CSE
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHC-------CC--CCCCHHHHHhc---CCE
Confidence 5679999999999999999999999 9999999998 344444332 23 56 88888887 999
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHH
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEA 154 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~ 154 (505)
||+|||++..+ ++++++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++ .+..|. .+++||+++
T Consensus 91 Vi~avp~~~~~-~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~-~a~~g~l~i~vgg~~~- 167 (317)
T 4ezb_A 91 VLSLVVGAATK-AVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV-PPYAEKVPILVAGRRA- 167 (317)
T ss_dssp EEECCCGGGHH-HHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS-TTTGGGSEEEEESTTH-
T ss_pred EEEecCCHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc-hhhcCCEEEEEeCChH-
Confidence 99999997544 56689999999999999999999999999999999999999999999964 555666 899999887
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCC-CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcc
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELE 233 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~ 233 (505)
++++++|+.++ ++++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| ++++ +.+.+..- +...
T Consensus 168 -~~~~~ll~~~g------~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~G-id~~-~~~~l~~~--~~~~ 236 (317)
T 4ezb_A 168 -VEVAERLNALG------MNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG-VTER-ILDSVQET--FPGL 236 (317)
T ss_dssp -HHHHHHHHTTT------CEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHHHH--STTS
T ss_pred -HHHHHHHHHhC------CCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHH-HHHHHHhc--Cccc
Confidence 89999999999 78999998 899999999999999999999999999999999 9995 44444221 1122
Q ss_pred hhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 234 SFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 234 s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
+| +.+.+.+.. ++|.++|. +.||++ .+++.|+++|+|+|+..++ .+.|..
T Consensus 237 ~~--~~~~~~~~~-~~~~~g~~---~~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~~~ 286 (317)
T 4ezb_A 237 DW--RDVADYYLS-RTFEHGAR---RVTEMT------EAAETIESFGLNAPMSRAA-CETIAA 286 (317)
T ss_dssp CH--HHHHHHHHH-HHHHHHHH---HHHHHH------HHHHHHHTTTCCCHHHHHH-HHHHHH
T ss_pred cH--HHhhhhhhc-CCCCCCcc---hHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 33 223333322 33555565 367775 7899999999999998865 445433
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-31 Score=264.36 Aligned_cols=257 Identities=21% Similarity=0.347 Sum_probs=224.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|+|||+|.||..++.+|+++|++|++|||++++.+.+.+.+ +..+.+++++++. +|+|++++|.+..
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~~ 73 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQG-------AQACENNQKVAAA---SDIIFTSLPNAGI 73 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCHHH
Confidence 46899999999999999999999999999999999988876542 4667899998887 9999999998777
Q ss_pred HHHHHH---HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 86 VDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~---~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
++.++. ++.+.+.++++||+++|..+.+..++.+.+.++|++|+++|+++++.++..|. .+++||+++.++.++++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~l 153 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPV 153 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHH
Confidence 888885 78888999999999999998888888888888899999999999998888888 88889999999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhh
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ ..++++++.|+|..+|+++|.+.+..+++++|++.++++.| ++++++.+++. .+...++.+..+.
T Consensus 154 l~~~g------~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~~ 223 (301)
T 3cky_A 154 LSVIG------KDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCG-LKPETMQEIIG---KSSGRSYAMEAKM 223 (301)
T ss_dssp HHHHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHHC
T ss_pred HHHhc------CCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHhh
Confidence 99999 67888999999999999999999999999999999999998 99999888873 4445566666555
Q ss_pred h-hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 242 D-IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 242 ~-~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+ .+.. +++.+++.++.+.||++ ++++.++++|+|+|+..+.
T Consensus 224 ~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~ 265 (301)
T 3cky_A 224 EKFIMS-GDFAGGFAMDLQHKDLG------LALEAGKEGNVPLPMTAMA 265 (301)
T ss_dssp CCCCCT-CCCSSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH
T ss_pred hhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHhCCCChHHHHH
Confidence 4 3332 44677899999999885 8999999999999998864
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=259.95 Aligned_cols=257 Identities=19% Similarity=0.291 Sum_probs=220.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||..+|.+|+++|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+++|.+..+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~Dvvi~~vp~~~~~ 70 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAG-------EQVVSSPADVAEK---ADRIITMLPTSINA 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCCHHHH
Confidence 4899999999999999999999999999999999988877542 5667899998887 99999999987788
Q ss_pred HHHHHH---HhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 87 DQTIAA---LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl~~---l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
+.++.+ +.+.+.++++||++++..+.+.+++.+.+.+++..|+++|+++|+..+..|. .+++|++++.++.++++|
T Consensus 71 ~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~ 150 (296)
T 2gf2_A 71 IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELL 150 (296)
T ss_dssp HHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHH
T ss_pred HHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHH
Confidence 888875 4557789999999998888888887777777889999999999988888888 888999999999999999
Q ss_pred HHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ ..+++++..|+|+..|+++|.+.+..+.+++|++.++++.| ++++++.+++. .+.+.+++++...+
T Consensus 151 ~~~g------~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~~~ 220 (296)
T 2gf2_A 151 GCMG------SNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLG-LDPKLLAKILN---MSSGRCWSSDTYNP 220 (296)
T ss_dssp TTTE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHSCS
T ss_pred HHHc------CCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hCcccCHHHHhcCC
Confidence 9999 67888999999999999999999999999999999999998 99999988874 45556677654321
Q ss_pred ---hcc---cccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 243 ---IFK---VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 243 ---~l~---~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
.++ ..+++.++|.++.+.||++ ++++.|+++|+|+|+..++
T Consensus 221 ~~~~l~~s~~~~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~ 267 (296)
T 2gf2_A 221 VPGVMDGVPSANNYQGGFGTTLMAKDLG------LAQDSATSTKSPILLGSLA 267 (296)
T ss_dssp STTTCSSSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH
T ss_pred cccccccchhccCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 221 1235677899999998886 8999999999999998864
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=261.24 Aligned_cols=256 Identities=23% Similarity=0.347 Sum_probs=222.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|+|||+|.||..+|.+|+++|++|++|| ++++.+.+.+.+ +..+.+++++++. +|+||+++|.+..
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~~ 71 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLG-------AVNVETARQVTEF---ADIIFIMVPDTPQ 71 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTT-------CBCCSSHHHHHHT---CSEEEECCSSHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEECCCHHH
Confidence 4799999999999999999999999999999 998888776543 4567789998887 9999999999777
Q ss_pred HHHHHH---HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 86 VDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~---~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
++.++. ++.+.+.+|++||+++|+.+.+.+++.+.+.++|++|+++|+++++..+..|. .+++||+++.+++++++
T Consensus 72 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~l 151 (295)
T 1yb4_A 72 VEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPL 151 (295)
T ss_dssp HHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHH
Confidence 888887 78888899999999999998888888888888899999999999988888888 88889999999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhh
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ ..++++++.|.+..+|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+...++.+....
T Consensus 152 l~~~g------~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~~ 221 (295)
T 1yb4_A 152 FDILG------KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-ADPVRVRQAL---MGGFASSRILEVHG 221 (295)
T ss_dssp HHHHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TSSSSCBHHHHHHH
T ss_pred HHHhc------CCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCCCCCHHHHHhh
Confidence 99999 67889999999999999999999999999999999999998 9999888876 45555666666444
Q ss_pred hhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 242 ~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
..+.. +++.+++..+.+.||++ +.++.++++|+|+|++.+.
T Consensus 222 ~~~~~-~~~~~g~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~ 262 (295)
T 1yb4_A 222 ERMIN-RTFEPGFKIALHQKDLN------LALQSAKALALNLPNTATC 262 (295)
T ss_dssp HHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH
T ss_pred HHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 44443 44677888998888885 8899999999999998864
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=258.13 Aligned_cols=252 Identities=23% Similarity=0.303 Sum_probs=218.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||..+|.+|++ |++|++|||++++.+.+.+.+. ..++ ++++++. +|+||+|+|++..+
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~-------~~~~-~~~~~~~---~D~vi~~v~~~~~~ 69 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFG-------SEAV-PLERVAE---ARVIFTCLPTTREV 69 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHC-------CEEC-CGGGGGG---CSEEEECCSSHHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCC-------cccC-HHHHHhC---CCEEEEeCCChHHH
Confidence 589999999999999999999 9999999999999888876542 3344 6676666 99999999997668
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~~i 165 (505)
+.+++++.+.+.+|.+||++|+..+.+.+++.+.+.++|++|+++|+++++..+..|+ .+++|++++.++.++++| .+
T Consensus 70 ~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~ 148 (289)
T 2cvz_A 70 YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AY 148 (289)
T ss_dssp HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TT
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hh
Confidence 8899999999999999999999998888888888888899999999999998888888 788899999999999999 99
Q ss_pred hcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh--h
Q 010652 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD--I 243 (505)
Q Consensus 166 ga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~--~ 243 (505)
+ ..++++++.+.++++|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+...+++++.+.+ +
T Consensus 149 g------~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~~~~~~ 218 (289)
T 2cvz_A 149 A------KKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQRV 218 (289)
T ss_dssp E------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHHT
T ss_pred c------CCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cCHHHHHHHH---HccCCCCHHHHHhccchh
Confidence 8 66889999999999999999999999999999999999998 9999888876 455556677765555 4
Q ss_pred cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+. +++++++.++.+.||++ ++++.++++|+|+|+..+.
T Consensus 219 l~--~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~v 256 (289)
T 2cvz_A 219 LT--RAFPKTFALGLLVKDLG------IAMGVLDGEKAPSPLLRLA 256 (289)
T ss_dssp TT--SCCCCSSBHHHHHHHHH------HHHHHHTTTCCCCHHHHHH
T ss_pred hc--CCCCCCcChHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 44 44677889999998875 8899999999999998864
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=255.11 Aligned_cols=257 Identities=19% Similarity=0.295 Sum_probs=220.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|+|||+|.||..+|.+|++.|++|++|||++++.+++.+.+ +....+++++++. +|+||+|+|++..
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~DvVi~av~~~~~ 99 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEG-------ARLGRTPAEVVST---CDITFACVSDPKA 99 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTT-------CEECSCHHHHHHH---CSEEEECCSSHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCEEEEeCCCHHH
Confidence 36899999999999999999999999999999999988876643 4567789888887 9999999997778
Q ss_pred HHHHHHHH---hhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 86 VDQTIAAL---SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~~l---~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
++.++.++ .+.+.++++||++||..+...+++.+.+..++..|+++|++|++..+..|+ .+++||+++.++.++++
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~l 179 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSC 179 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHH
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHH
Confidence 88888654 477889999999999998888888888877889999999999998888898 77888999999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhh
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ ..++++|+.+.+...|++.|.+....+.++.|++.++++.| ++++++.+++. .+...++.+....
T Consensus 180 l~~~g------~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G-~~~~~~~~~~~---~~~~~s~~~~~~~ 249 (316)
T 2uyy_A 180 FQAMG------KTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG-QSQQTLLDILN---QGQLASIFLDQKC 249 (316)
T ss_dssp HHHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHH
T ss_pred HHHhc------CCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHhh
Confidence 99999 67888899999999999999999999999999999999998 99999988863 4455566555443
Q ss_pred hhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 242 ~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+.+.. +++++++.++.+.++++ ++++.++++|+|+|+..++
T Consensus 250 ~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~v 290 (316)
T 2uyy_A 250 QNILQ-GNFKPDFYLKYIQKDLR------LAIALGDAVNHPTPMAAAA 290 (316)
T ss_dssp HHHHH-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH
T ss_pred HHhhc-CCCCCCCcHHHHHHHHH------HHHHHHHHhCCCChHHHHH
Confidence 33322 34777889999888875 8899999999999998864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=257.15 Aligned_cols=251 Identities=16% Similarity=0.138 Sum_probs=203.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc---------------ccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH---------------REGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~---------------~~g~~~i~~~~s~~e~v~~l~ 71 (505)
-+|+|||+|.||.++|.+|+++||+|++|||++++++.+.+... ..+ +++++++++++++.
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g--~l~~ttd~~ea~~~-- 84 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAG--RLSFTTDLAEGVKD-- 84 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHTT--
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccC--CEEEECCHHHHHhc--
Confidence 47999999999999999999999999999999999998875310 011 47888999998887
Q ss_pred CCcEEEEecCCCc----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhh
Q 010652 72 RPRSVIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR 141 (505)
Q Consensus 72 ~advIil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~ 141 (505)
+|+||+|||++. .++++++++.+.+.+|++||+.||+.|.+++++.+.+.+.+.. .+.++.++|+.++
T Consensus 85 -aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~ 162 (446)
T 4a7p_A 85 -ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLR 162 (446)
T ss_dssp -CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCC
T ss_pred -CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCccccc
Confidence 999999998875 5899999999999999999999999999999999888876533 4566666666666
Q ss_pred cCC---------cccCCCC-HHHHHHHHHHHHHhhcccCCCCc---EEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHH
Q 010652 142 HGP---------SLMPGGS-FEAYNNIRDILQKVAAQVDDGPC---VTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (505)
Q Consensus 142 ~G~---------~i~~gg~-~e~~~~v~~ll~~iga~~~~~~~---v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l 208 (505)
.|. .+++|++ +++.++++++|+.+. +. ++++++.++|+++|+++|.+.+..+++++|+..+
T Consensus 163 eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~------~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l 236 (446)
T 4a7p_A 163 EGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLS------LNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADL 236 (446)
T ss_dssp TTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----------CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHh------cCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 6788885 899999999998877 43 6888999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 209 LKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 209 ~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+++.| +|++++.+++. .++- +....+. .+++|...-+.||.. ..+..|.++|+++|++.+
T Consensus 237 ~~~~G-iD~~~v~~~~~---~~~r------ig~~~l~----pg~G~gg~c~~KD~~------~l~~~A~~~g~~~~l~~~ 296 (446)
T 4a7p_A 237 CEQVG-ADVQEVSRGIG---MDNR------IGGKFLH----AGPGYGGSCFPKDTL------ALMKTAADNETPLRIVEA 296 (446)
T ss_dssp HHHTT-CCHHHHHHHHH---TSTT------C---CCC----CCSCCCTTTHHHHHH------HHHHHHHHTTCCCHHHHH
T ss_pred HHHcC-CCHHHHHHHHh---cCCC------CCCccCC----CCCCcchhhHHHHHH------HHHHHHHhcCCCCHHHHH
Confidence 99999 99999999873 2210 0011122 123344556677764 778899999999999997
Q ss_pred H
Q 010652 289 S 289 (505)
Q Consensus 289 A 289 (505)
+
T Consensus 297 ~ 297 (446)
T 4a7p_A 297 T 297 (446)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-28 Score=254.38 Aligned_cols=255 Identities=13% Similarity=0.076 Sum_probs=201.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc---------------ccCCCCeeeeCCHHHHHhhc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH---------------REGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~---------------~~g~~~i~~~~s~~e~v~~l 70 (505)
+|||+|||+|.||.++|.+|+++||+|++||+++++++.+.+... ..+ ++..+++++++++.
T Consensus 2 ~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~--~l~~t~d~~ea~~~- 78 (450)
T 3gg2_A 2 SLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAG--RLRFGTEIEQAVPE- 78 (450)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTT--SEEEESCHHHHGGG-
T ss_pred CCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccC--cEEEECCHHHHHhc-
Confidence 379999999999999999999999999999999999988775210 011 47788999998887
Q ss_pred CCCcEEEEecCCCc---------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe---EEcCCCCCChh
Q 010652 71 QRPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL---YLGMGVSGGEE 138 (505)
Q Consensus 71 ~~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~---~v~~pvsgg~~ 138 (505)
+|+||+|||++. .++++++++.+.+.+|++||+.||+.|.+++++.+.+.+.+.. ..+.++.++|+
T Consensus 79 --aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe 156 (450)
T 3gg2_A 79 --ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPE 156 (450)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCC
T ss_pred --CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechh
Confidence 999999999974 7999999999999999999999999999999988877664221 13445555555
Q ss_pred hhhcCC---------cccCCC-CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHH
Q 010652 139 GARHGP---------SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (505)
Q Consensus 139 ~a~~G~---------~i~~gg-~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l 208 (505)
.++.|. .+++|| ++++.++++++|+.++.+ ..++++++.+.++++|+++|.+.+..+++++|+..+
T Consensus 157 ~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~----~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l 232 (450)
T 3gg2_A 157 FLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLN----NFRVLFMDIASAEMTKYAANAMLATRISFMNDVANL 232 (450)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCS----CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcC----CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 477787 589999999999988721 136788888999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 209 LKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 209 ~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+++.| +|++++.+++. .+. ++....+.. +++|...-+.||.. +.+..|.++|+++|++.+
T Consensus 233 ~~~~G-id~~~v~~~~~---~~~------rig~~~~~p----g~G~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 292 (450)
T 3gg2_A 233 CERVG-ADVSMVRLGIG---SDS------RIGSKFLYP----GCGYGGSCFPKDVK------ALIRTAEDNGYRMEVLEA 292 (450)
T ss_dssp HHHHT-CCHHHHHHHHH---TST------TTCSSSCCC----SSCCCSSHHHHHHH------HHHHHHHHTTCCCHHHHH
T ss_pred HHHhC-CCHHHHHHHHc---CCC------CCCcccCCC----CCCCCcccHHhhHH------HHHHHHHHcCCCcHHHHH
Confidence 99999 99999999873 221 000011211 22344455667764 778899999999999987
Q ss_pred H
Q 010652 289 S 289 (505)
Q Consensus 289 A 289 (505)
+
T Consensus 293 ~ 293 (450)
T 3gg2_A 293 V 293 (450)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=246.03 Aligned_cols=253 Identities=11% Similarity=0.034 Sum_probs=200.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChh----HHHHHHHhhc-----------------ccCCCCeeeeC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTS----KVDETLDRAH-----------------REGQLPLTGHY 61 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~-G~-~V~v~dr~~~----~~~~~~~~~~-----------------~~g~~~i~~~~ 61 (505)
.+|||+|||+|.||.++|.+|+++ || +|++||++++ +++.+.+... ..+ ++.+++
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g--~l~~tt 94 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAG--KFECTP 94 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTT--CEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccC--CeEEeC
Confidence 357999999999999999999999 99 9999999999 8888764210 011 466666
Q ss_pred CHHHHHhhcCCCcEEEEecCCCc-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--HcC---
Q 010652 62 TPRDFVLSIQRPRSVIILVKAGS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QKG--- 125 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~g--- 125 (505)
+ .+.++. +|+||+|||++. .+..+.+++.+.+.+|++||+.||+.|.+++++.+.+. ..|
T Consensus 95 d-~ea~~~---aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~ 170 (478)
T 3g79_A 95 D-FSRISE---LDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKA 170 (478)
T ss_dssp C-GGGGGG---CSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCB
T ss_pred c-HHHHhc---CCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCc
Confidence 7 566666 999999999873 36777789999999999999999999999999886443 234
Q ss_pred ---CeEEcCCCCCChhhhhc----CCcccCCCCHHHHHHHHHHHHHh-hcccCCCCcEEEeCCCCchhhhhhHhHHHHHH
Q 010652 126 ---LLYLGMGVSGGEEGARH----GPSLMPGGSFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYG 197 (505)
Q Consensus 126 ---i~~v~~pvsgg~~~a~~----G~~i~~gg~~e~~~~v~~ll~~i-ga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~ 197 (505)
+.++++|.++.+..+.. .+.++.|++++.+++++++|+.+ + ..++++|+.++|+++|+++|.+.+.
T Consensus 171 ~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~------~~~~~~~~~~~aE~~Kl~~N~~~a~ 244 (478)
T 3g79_A 171 GEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLT------VGQVIPMSATAAEVTKTAENTFRDL 244 (478)
T ss_dssp TTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCS------SCCEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhcc------CCeEEeCCHHHHHHHHHHHHHHHHH
Confidence 46889998876655433 23788999999999999999999 6 5688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCch--hHHHHHhhhCCCccHHHHHHH
Q 010652 198 DMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQ 275 (505)
Q Consensus 198 ~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~--~ld~i~~~~~~kgtg~~~~~~ 275 (505)
.+++++|+..++++.| +|++++.+++. .. +.+++... .+.|+| --.-+-||.. ..+..
T Consensus 245 ~Ia~~nE~~~l~e~~G-iD~~~v~~~~~---~~----~~~ri~~~------~~~PG~G~GG~c~~KD~~------~l~~~ 304 (478)
T 3g79_A 245 QIAAINQLALYCEAMG-INVYDVRTGVD---SL----KGEGITRA------VLWPGAGVGGHCLTKDTY------HLERG 304 (478)
T ss_dssp HHHHHHHHHHHHHHTT-CCHHHHHHHHH---TS----CCSSSCCC------CCCCCSCCCSSHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHC---CC----chhhhccc------cCCCCCCcchhhHHHHHH------HHHHH
Confidence 9999999999999999 99999999873 21 11122111 233332 2234566653 67889
Q ss_pred HHHcCCC-------cchhHHH
Q 010652 276 AAELSVA-------APTIAAS 289 (505)
Q Consensus 276 A~~~gvp-------~p~i~~A 289 (505)
|.++|++ .|++.++
T Consensus 305 a~~~g~~~~~~~~~~~li~~~ 325 (478)
T 3g79_A 305 VKIGRGELDYPEGADSIYVLA 325 (478)
T ss_dssp HTTSSCCCCCCSSCCCHHHHH
T ss_pred HHHcCCCcccccchhHHHHHH
Confidence 9999988 8898876
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-26 Score=222.12 Aligned_cols=244 Identities=15% Similarity=0.152 Sum_probs=192.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC--ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR--TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr--~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+|+|||+|.||..+|.+|+++||+|++||| ++++.+++.+.+ +. .+++++++. +|+||+|||+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g-------~~--~~~~~~~~~---aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-------VT--ETSEEDVYS---CPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT-------CE--ECCHHHHHT---SSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCC-------Cc--CCHHHHHhc---CCEEEEECCCHH
Confidence 4899999999999999999999999999999 777777776543 34 677888876 999999999976
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQK 164 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ 164 (505)
.++. +.++.+.+.+ +|||+++..+.+++++.+.+.+.| |+++|+++++..+..|..+++||+.+ +.+++ |+.
T Consensus 69 ~~~~-~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~~~~~g~~~--~~~~~-l~~ 140 (264)
T 1i36_A 69 ALGA-ARRAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDA--EEFMK-LNR 140 (264)
T ss_dssp HHHH-HHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCEEEEESTTH--HHHHG-GGG
T ss_pred HHHH-HHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCeEEecCCcH--HHhhh-HHH
Confidence 5555 4678887765 999999999888888888877766 88999999998888887777788766 78889 999
Q ss_pred hhcccCCCCcEEEeCC-CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhh
Q 010652 165 VAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 165 iga~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (505)
+| .+++++++ .|.++.+|+++|.+.+..+.+++|++.++++.| ++++ ..+.+ +.+.+.+++. .. +.
T Consensus 141 ~g------~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G-~~~~-~~~~~---~~~~g~~~~~-~~-~~ 207 (264)
T 1i36_A 141 YG------LNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLG-LEED-VLEML---EYTEGNDFRE-SA-IS 207 (264)
T ss_dssp GT------CEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHH---HTTSCSSTHH-HH-HH
T ss_pred cC------CeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHH-HHHHH---HHhcCccHHH-HH-HH
Confidence 99 77889998 799999999999999999999999999999998 9876 55665 3333334432 22 22
Q ss_pred cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 010652 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (505)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~ 295 (505)
+.. +++.+++. ..++++ .+++.++++ +|+|+..+. .+.+.
T Consensus 208 ~~~-~~~~~g~~---~~~~~~------~~~~~a~~~-v~~p~~~~v-~~~~~ 247 (264)
T 1i36_A 208 RLK-SSCIHARR---RYEEMK------EVQDMLAEV-IDPVMPTCI-IRIFD 247 (264)
T ss_dssp HHH-HHHHTHHH---HHHHHH------HHHHHHHTT-SCCSHHHHH-HHHHH
T ss_pred Hhc-CCCCcchh---hHHHHH------HHHHHHHHh-cCchHHHHH-HHHHH
Confidence 222 23455554 334543 688999999 999999864 44443
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=235.28 Aligned_cols=208 Identities=15% Similarity=0.143 Sum_probs=176.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-----------ccCCCCeeeeCCHHHHHhhcCCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-----------REGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~-----------~~g~~~i~~~~s~~e~v~~l~~a 73 (505)
.+|||+|||+|.||.++|..|++ ||+|++||+++++++.+.+... ..+..+++++++++++++. +
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~---a 110 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN---A 110 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT---C
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC---C
Confidence 35799999999999999999998 9999999999999988765210 0000147888999988887 9
Q ss_pred cEEEEecCCCc----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcC
Q 010652 74 RSVIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 74 dvIil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G 143 (505)
|+||+|||++. .++++++++.+ +.+|++||+.||+.|.+++++.+.+.+.++.| +|+++++..+..+
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~~--sPe~~~~G~A~~~ 187 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVIF--SPEFLREGRALYD 187 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEEE--CCCCCCTTSHHHH
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEee--cCccCCcchhhhc
Confidence 99999999962 68888899999 99999999999999999999999887765544 9999998777554
Q ss_pred ----CcccCCCCHHHHHHHHHHHHH--hhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 144 ----PSLMPGGSFEAYNNIRDILQK--VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 144 ----~~i~~gg~~e~~~~v~~ll~~--iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
+.+|+||+++.++++.++|.. ++. ...+++++.++|+++|+++|.+.+..+++++|+..++++.| +|+
T Consensus 188 ~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~-----~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~G-iD~ 261 (432)
T 3pid_A 188 NLHPSRIVIGERSARAERFADLLKEGAIKQ-----DIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQG-LNS 261 (432)
T ss_dssp HHSCSCEEESSCSHHHHHHHHHHHHHCSSS-----SCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCH
T ss_pred ccCCceEEecCCHHHHHHHHHHHHhhhccC-----CCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCH
Confidence 278999999999999999987 331 22356678899999999999999999999999999999999 999
Q ss_pred HHHHHHHH
Q 010652 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~~~~ 225 (505)
+++.+++.
T Consensus 262 ~~v~~~~~ 269 (432)
T 3pid_A 262 KQIIEGVC 269 (432)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999873
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=237.70 Aligned_cols=252 Identities=12% Similarity=0.083 Sum_probs=198.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHh---------------hcccCCCCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~---------------~~~~g~~~i~~~~s~~e~v~ 68 (505)
+|+|+|||+|.||.++|.+|+++ |++|++|||++++++.+.+. .... ++..++++++.++
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~---~~~~t~~~~e~~~ 81 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGK---NLFFSTNIDDAIK 81 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTT---TEEEESCHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcC---CEEEECCHHHHHh
Confidence 47999999999999999999999 89999999999998875321 0001 4677889988888
Q ss_pred hcCCCcEEEEecCCCch--------------HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 69 SIQRPRSVIILVKAGSP--------------VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 69 ~l~~advIil~vp~~~~--------------v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
. +|+||+|||++.. +.++++++.+.+.+|++||++||+.+.+++++.+.+.+.+..+++++++
T Consensus 82 ~---aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~ 158 (467)
T 2q3e_A 82 E---ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVL 158 (467)
T ss_dssp H---CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEE
T ss_pred c---CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEE
Confidence 7 9999999998653 5677888999999999999999999999988888888766556677778
Q ss_pred CChhhhhcCC-c--------ccCCC-----CHHHHHHHHHHHHHh-hcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHH
Q 010652 135 GGEEGARHGP-S--------LMPGG-----SFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDM 199 (505)
Q Consensus 135 gg~~~a~~G~-~--------i~~gg-----~~e~~~~v~~ll~~i-ga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~ 199 (505)
++++.+..|. . +++|| ++++.+.++++|+.+ + ..++++++.++++++|++.|.+.+..+
T Consensus 159 ~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g------~~~~~~~~~~~ae~~Kl~~N~~~a~~i 232 (467)
T 2q3e_A 159 SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVP------REKILTTNTWSSELSKLAANAFLAQRI 232 (467)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSC------GGGEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhcc------CCeEEecCHHHHHHHHHHHHHHHHHHH
Confidence 8888777776 3 77888 778899999999998 5 467888899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHc
Q 010652 200 QLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAEL 279 (505)
Q Consensus 200 ~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~ 279 (505)
++++|+..++++.| ++++++.+++..+.. ..+ ..+...-.|++. -+.||+. +.+..|.++
T Consensus 233 a~~nE~~~l~~~~G-id~~~v~~~~~~~~~--~~~-------~~~~pg~g~gg~----c~~kD~~------~l~~~a~~~ 292 (467)
T 2q3e_A 233 SSINSISALCEATG-ADVEEVATAIGMDQR--IGN-------KFLKASVGFGGS----CFQKDVL------NLVYLCEAL 292 (467)
T ss_dssp HHHHHHHHHHHHHT-CCHHHHHHHHHTSTT--TCS-------SSCCCCSCCCSS----SHHHHHH------HHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cCHHHHHHHHcCCCC--CCc-------cccCCCCCCCCc----cHHHHHH------HHHHHHHHc
Confidence 99999999999999 999999998743211 011 112211113333 2446653 677899999
Q ss_pred CCC--cchhHHH
Q 010652 280 SVA--APTIAAS 289 (505)
Q Consensus 280 gvp--~p~i~~A 289 (505)
|+| .+++.++
T Consensus 293 g~~~~~~~~~~~ 304 (467)
T 2q3e_A 293 NLPEVARYWQQV 304 (467)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCchHHHHHHHH
Confidence 997 4555543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-25 Score=230.00 Aligned_cols=202 Identities=12% Similarity=0.140 Sum_probs=170.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc---------------cCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---------------EGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~---------------~g~~~i~~~~s~~e~v~~l~ 71 (505)
.|..|||+|+||.++|.+|+++||+|++||+++++++.+.+.... .| ++.++++ ++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g--~l~~ttd-------~~ 82 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSG--KLKVSTT-------PE 82 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESS-------CC
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccC--ceEEeCc-------hh
Confidence 479999999999999999999999999999999999998753210 01 2344443 23
Q ss_pred CCcEEEEecCCCc-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH-cC------CeEEcCCC
Q 010652 72 RPRSVIILVKAGS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ-KG------LLYLGMGV 133 (505)
Q Consensus 72 ~advIil~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~-~g------i~~v~~pv 133 (505)
.+|+||+|||++. .+..+.+++.+.+.+|++||+.||+.|.+++++.+.+.+ .| +.++++|.
T Consensus 83 ~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 83 ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence 4999999999986 377788999999999999999999999999998876544 45 36788997
Q ss_pred CCChhhhhcC---C-cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHH
Q 010652 134 SGGEEGARHG---P-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVL 209 (505)
Q Consensus 134 sgg~~~a~~G---~-~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~ 209 (505)
+..+..+.++ | .++.|+++++.++++++|+.++ +.++++|+.++|+++|+++|.+.+..+++++|+..++
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~------~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~ 236 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFV------QGEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTC------CSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHh------CCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665444322 3 7889999999999999999998 6678889999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 010652 210 KHVGGLSNAELAEIF 224 (505)
Q Consensus 210 ~~~g~l~~~~i~~~~ 224 (505)
++.| +|++++.+++
T Consensus 237 e~~G-iD~~~v~~~~ 250 (431)
T 3ojo_A 237 NNLN-INVLDVIEMA 250 (431)
T ss_dssp HHTT-CCHHHHHHHH
T ss_pred HHcC-CCHHHHHHHH
Confidence 9999 9999999987
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=230.50 Aligned_cols=254 Identities=14% Similarity=0.077 Sum_probs=195.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc---------------cCCCCeeeeCCHHHHHhhc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---------------EGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~---------------~g~~~i~~~~s~~e~v~~l 70 (505)
.|||+|||+|.||.++|..|+++||+|++||+++++++.+.+.+.. .+ ++.+++++++.++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~--~l~~ttd~~~a~~~- 84 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAG--RLRFSTDIEAAVAH- 84 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEECCHHHHHHH-
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccC--CEEEECCHHHHhhc-
Confidence 4799999999999999999999999999999999999988764210 01 36788899888877
Q ss_pred CCCcEEEEecCCC---------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc---CCeE-EcCCCCCCh
Q 010652 71 QRPRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK---GLLY-LGMGVSGGE 137 (505)
Q Consensus 71 ~~advIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~---gi~~-v~~pvsgg~ 137 (505)
+|+||+|||++ ..++++++.+.+.+.++++||+.||+.+.+++++.+.+.+. | .| ++.+++++|
T Consensus 85 --aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~P 161 (478)
T 2y0c_A 85 --GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNP 161 (478)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECC
T ss_pred --CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEECh
Confidence 99999999996 68999999999999999999999999999998887777653 3 22 344566666
Q ss_pred hhhhcCC---------cccCCCC-H----HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHH
Q 010652 138 EGARHGP---------SLMPGGS-F----EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (505)
Q Consensus 138 ~~a~~G~---------~i~~gg~-~----e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~ 203 (505)
+.+..|. .+++|++ + ++.+.++++|+.+..+ ..++++++.+.+.+.|++.|.+....+++++
T Consensus 162 e~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~n 237 (478)
T 2y0c_A 162 EFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRN----HERTLYMDVRSAEFTKYAANAMLATRISFMN 237 (478)
T ss_dssp CCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSS----SCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhcc----CCeEEcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555554 5777775 5 7889999999876610 1578888889999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCc
Q 010652 204 EAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (505)
Q Consensus 204 Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~ 283 (505)
|+..++++.| ++++++.+.+.. . +. +....+...-.+++.. +.+|.. ..+..|+++|+++
T Consensus 238 E~~~la~~~G-id~~~v~~~i~~---~---~r---ig~~~~~pG~g~gg~c----~~kD~~------~l~~~A~~~gv~~ 297 (478)
T 2y0c_A 238 ELANLADRFG-ADIEAVRRGIGS---D---PR---IGYHFLYAGCGYGGSC----FPKDVE------ALIRTADEHGQSL 297 (478)
T ss_dssp HHHHHHHHTT-CCHHHHHHHHHT---S---TT---TCSTTCCCSSCCCSSS----HHHHHH------HHHHHHHHTTCCC
T ss_pred HHHHHHHHhC-CCHHHHHHHHhc---C---Cc---cCcccCCCCcccccCc----CHHHHH------HHHHHHHHcCCCc
Confidence 9999999999 999999887631 0 00 0000111100122221 333432 6778999999999
Q ss_pred chhHHH
Q 010652 284 PTIAAS 289 (505)
Q Consensus 284 p~i~~A 289 (505)
|++.++
T Consensus 298 pl~~~v 303 (478)
T 2y0c_A 298 QILKAV 303 (478)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-25 Score=234.79 Aligned_cols=257 Identities=14% Similarity=0.073 Sum_probs=194.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcc---cC---------CCCeeeeCCHHHHHhhc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR---EG---------QLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~---~g---------~~~i~~~~s~~e~v~~l 70 (505)
++|||+|||+|.||.++|.+|+++ ||+|++|||++++++.+.+.... .+ ..++.+++++++.++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~- 86 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAE- 86 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhc-
Confidence 357999999999999999999998 79999999999999887642100 00 0036778888888877
Q ss_pred CCCcEEEEecCCCc--------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH-cCC------eEE
Q 010652 71 QRPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ-KGL------LYL 129 (505)
Q Consensus 71 ~~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~-~gi------~~v 129 (505)
+|+||+|||++. .++++++++.+.+.+|++||+.||+.+.+++++.+.+.+ .++ .+.
T Consensus 87 --aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~ 164 (481)
T 2o3j_A 87 --ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVL 164 (481)
T ss_dssp --CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEE
T ss_pred --CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEE
Confidence 999999998864 388888999999999999999999999999988888877 542 234
Q ss_pred cCCCCCChhhhh----cCCcccCCCCH-----HHHHHHHHHHHHhhcccCCCC-cEEEeCCCCchhhhhhHhHHHHHHHH
Q 010652 130 GMGVSGGEEGAR----HGPSLMPGGSF-----EAYNNIRDILQKVAAQVDDGP-CVTYIGEGGSGNFVKMVHNGIEYGDM 199 (505)
Q Consensus 130 ~~pvsgg~~~a~----~G~~i~~gg~~-----e~~~~v~~ll~~iga~~~~~~-~v~~~G~~G~g~~vK~v~N~i~~~~~ 199 (505)
..|....+..+. ..+.+++||+. ++++.++++|+.++ + .++++++.++++++|++.|.+....+
T Consensus 165 ~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~------~~~~~~~~d~~~ae~~Kl~~N~~~a~~i 238 (481)
T 2o3j_A 165 SNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWV------PRNRIITTNTWSSELSKLVANAFLAQRI 238 (481)
T ss_dssp ECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTS------CGGGEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred eCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhc------CCCeEEecCHHHHHHHHHHHHHHHHHHH
Confidence 455544433322 22267888754 57889999999988 4 57788888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHc
Q 010652 200 QLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAEL 279 (505)
Q Consensus 200 ~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~ 279 (505)
++++|+..++++.| +|++++.+++. .+. . +....+... + +|...-+.||.. ..+..|.++
T Consensus 239 a~~nE~~~la~~~G-id~~~v~~~~~---~~~---r---i~~~~~~pg--~--g~gg~c~~KD~~------~l~~~A~~~ 298 (481)
T 2o3j_A 239 SSINSISAVCEATG-AEISEVAHAVG---YDT---R---IGSKFLQAS--V--GFGGSCFQKDVL------SLVYLCESL 298 (481)
T ss_dssp HHHHHHHHHHHHHS-CCHHHHHHHHH---TST---T---TCSSSCCCC--S--CCCSSSHHHHHH------HHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cCHHHHHHHHc---cCC---C---CCCCCCCCC--C--ccCCccHHHHHH------HHHHHHHHc
Confidence 99999999999999 99999998873 221 0 001112211 1 122233556663 677899999
Q ss_pred CCC--cchhHHHH
Q 010652 280 SVA--APTIAASL 290 (505)
Q Consensus 280 gvp--~p~i~~A~ 290 (505)
|+| +|++.++.
T Consensus 299 g~~~~~~l~~~~~ 311 (481)
T 2o3j_A 299 NLPQVADYWQGVI 311 (481)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCCccchHHHHHH
Confidence 999 89988763
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=226.26 Aligned_cols=253 Identities=15% Similarity=0.167 Sum_probs=190.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc---------------cCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---------------EGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~---------------~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.||.++|..|+++||+|++|||++++++.+.+.+.. .| ++..+++++++++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g--~l~~t~~~~~~~~~-- 76 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTG--RLSGTTDFKKAVLD-- 76 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHHT--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccC--ceEEeCCHHHHhcc--
Confidence 589999999999999999999999999999999999887652100 11 36778899888877
Q ss_pred CCcEEEEecCCCch---------HHHHHHHHhhccCC---CCEEEeCCCCChhh-HHHHHHHHHHc-CCeE-EcCCCCCC
Q 010652 72 RPRSVIILVKAGSP---------VDQTIAALSEHMSP---GDCIIDGGNEWYLN-TERRIHEASQK-GLLY-LGMGVSGG 136 (505)
Q Consensus 72 ~advIil~vp~~~~---------v~~vl~~l~~~l~~---g~iiId~st~~~~~-t~~~~~~l~~~-gi~~-v~~pvsgg 136 (505)
+|+||+|||++.. ++++++++.+.+.+ +++||+.||..+.+ .+.+.+.+.+. |..+ ++.+++++
T Consensus 77 -aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~ 155 (436)
T 1mv8_A 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (436)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEEC
Confidence 9999999999765 89999999999988 99999999999888 55566666654 5544 34455555
Q ss_pred hhhhhcCC---------cccCCCC-HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHH
Q 010652 137 EEGARHGP---------SLMPGGS-FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (505)
Q Consensus 137 ~~~a~~G~---------~i~~gg~-~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~ 206 (505)
++.+..|. .++.|++ +++.+.++++++.++ ..++. ++.+.++++|++.|.+....+++++|+.
T Consensus 156 Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~------~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~ 228 (436)
T 1mv8_A 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELD------APIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIG 228 (436)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSS------SCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccC------CCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443 4677775 888999999999998 44444 7789999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchh
Q 010652 207 DVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTI 286 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i 286 (505)
.++++.| ++++++.+++. ... .+.. ....+...-.+++ ..+.+|.. ..+..|.++|+++|++
T Consensus 229 ~l~~~~G-id~~~v~~~~~---~~~--r~~~--~~~~~~pg~g~gg----~~~~kD~~------~l~~~a~~~g~~~pl~ 290 (436)
T 1mv8_A 229 NIAKAVG-VDGREVMDVIC---QDH--KLNL--SRYYMRPGFAFGG----SCLPKDVR------ALTYRASQLDVEHPML 290 (436)
T ss_dssp HHHHHTT-SCHHHHHHHHT---TCT--TTTT--SSTTCSCCSCCCS----SSHHHHHH------HHHHHHHHTTCCCTTG
T ss_pred HHHHHhC-CCHHHHHHHhc---CCC--CCCC--cccCCCCcccccC----cCcHhhHH------HHHHHHHHcCCCcHHH
Confidence 9999998 99999988863 111 0000 0011111001222 23344442 6778999999999999
Q ss_pred HHH
Q 010652 287 AAS 289 (505)
Q Consensus 287 ~~A 289 (505)
.++
T Consensus 291 ~~v 293 (436)
T 1mv8_A 291 GSL 293 (436)
T ss_dssp GGH
T ss_pred HHH
Confidence 875
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=212.72 Aligned_cols=287 Identities=15% Similarity=0.124 Sum_probs=207.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-------CCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-------LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~-------~~i~~~~s~~e~v~~l~~advIil 78 (505)
+|||+|||+|.||.++|..|+++|++|++|||++++++.+.+.+.+... .++..+++++++++. +|+||+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~---aDvVil 105 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG---VTDILI 105 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT---CCEEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc---CCEEEE
Confidence 4699999999999999999999999999999999999988876432100 036678899888877 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHH----HHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHH
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR----IHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFE 153 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~----~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e 153 (505)
+||+ ..++++++++.+.+.++++||+++++....+..+ .+.+....+.++..|....+..+...+ .++.+.+++
T Consensus 106 aVp~-~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~ 184 (356)
T 3k96_A 106 VVPS-FAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQ 184 (356)
T ss_dssp CCCH-HHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHH
T ss_pred CCCH-HHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHH
Confidence 9998 4899999999999999999999998766554222 333332345567777665443332323 445567899
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCC-----------------CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~ 216 (505)
..+.++++|+..+ ..++...+ .|.+..+|+.+|.....+...++|+.+++++.| .+
T Consensus 185 ~~~~v~~lf~~~~------~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G-~~ 257 (356)
T 3k96_A 185 FSKDLIERLHGQR------FRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFG-GK 257 (356)
T ss_dssp HHHHHHHHHCCSS------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHhCCCC------eeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 9999999998766 34444333 256667899999999999999999999999999 99
Q ss_pred HHHHHHHHHHhccCCcchhhHhhhhhhcccccc----cCCchhHHHHHhhhCCCccHHHHH----HHHHHcCCCcchhHH
Q 010652 217 NAELAEIFDEWNKGELESFLVEITADIFKVKDE----YGEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAA 288 (505)
Q Consensus 217 ~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~----~~~~~~ld~i~~~~~~kgtg~~~~----~~A~~~gvp~p~i~~ 288 (505)
++++.+. .|.++ ++-++...+.++.. ...+..++.+++.++|+.+|..++ +.|+++|+++|+..+
T Consensus 258 ~~t~~gl-----~g~gD--l~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~ 330 (356)
T 3k96_A 258 QETLTGL-----AGLGD--LVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQ 330 (356)
T ss_dssp HHHHTST-----TTHHH--HHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hHhhccc-----chhhH--HHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHH
Confidence 9887643 22222 11111111111111 112346777888889999997766 478899999999885
Q ss_pred HHHHHHHcccchHHHHHHHHhccC
Q 010652 289 SLDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 289 A~~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
| .+.+...++.+..+..++..+
T Consensus 331 -v-~~il~~~~~~~~~~~~l~~r~ 352 (356)
T 3k96_A 331 -V-HRILHEDLDPQQAVQELLERS 352 (356)
T ss_dssp -H-HHHHHSCCCHHHHHHHHHSCC
T ss_pred -H-HHHHhCCCCHHHHHHHHHcCC
Confidence 4 466666677777777776543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=210.76 Aligned_cols=251 Identities=13% Similarity=0.030 Sum_probs=185.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc-----------CCCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE-----------GQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~-----------g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||+|.||.++|.+|++ ||+|++|||++++++.+.+.+..- ...++..++++++.++. +|+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~---aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcC---CCE
Confidence 589999999999999999999 999999999999998887543210 00034667788887777 999
Q ss_pred EEEecCCCc----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhh---c
Q 010652 76 VIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR---H 142 (505)
Q Consensus 76 Iil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~---~ 142 (505)
||+|||++. .++++++.+.+ +.++++||+.||..+.+++++.+.+.+. .++.+|....+..+. .
T Consensus 77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~ 153 (402)
T 1dlj_A 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (402)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred EEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence 999999974 58999999999 9999999999999999998888776544 566777766554332 2
Q ss_pred CC-cccCCCCH-------HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCC
Q 010652 143 GP-SLMPGGSF-------EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 143 G~-~i~~gg~~-------e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.+ .+++|++. +..+.+.++|..-..+ ...++++++.++++++|++.|.+.+..+++++|+..++++.|
T Consensus 154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~G- 229 (402)
T 1dlj_A 154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKK---NNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRK- 229 (402)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSC---SCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhcc---CCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 23 68888876 5566677777643210 012577888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 215 LSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 215 l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+|.+++.+++. .+. . +....+.. +.+|.-.-+.||.. ..+..| .|+|+|++.++
T Consensus 230 id~~~v~~~~~---~~~---r---i~~~~~~p----g~g~gg~c~~kD~~------~l~~~a--~~~~~~l~~~~ 283 (402)
T 1dlj_A 230 LNSHMIIQGIS---YDD---R---IGMHYNNP----SFGYGGYSLPKDTK------QLLANY--NNIPQTLIEAI 283 (402)
T ss_dssp CCHHHHHHHHH---TST---T---TCSSSCCC----CSSCCSSHHHHHHH------HHHHHH--TTSSCSHHHHH
T ss_pred CCHHHHHHHhc---cCC---C---CCcCCCCC----CCccCCccHHhhHH------HHHHHh--cCCChHHHHHH
Confidence 99999998863 222 1 10011111 11233345666653 344455 39999999876
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-23 Score=200.72 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=142.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--------------HHHHHHhhcccCCCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--------------VDETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~--------------~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.++|||||+|.||.+||.+|+++||+|++|||++++ .+++.+.. +...+.+++++++.
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~e~~~~-- 90 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH------PHVHLAAFADVAAG-- 90 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGS------TTCEEEEHHHHHHH--
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc------CceeccCHHHHHhc--
Confidence 478999999999999999999999999999999987 44444321 12346788898887
Q ss_pred CCcEEEEecCCCchHHHHHHHH-hhccCCCCEEEeCCCC-----------ChhhHHHHHHHHHH--------cCCeEEcC
Q 010652 72 RPRSVIILVKAGSPVDQTIAAL-SEHMSPGDCIIDGGNE-----------WYLNTERRIHEASQ--------KGLLYLGM 131 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l-~~~l~~g~iiId~st~-----------~~~~t~~~~~~l~~--------~gi~~v~~ 131 (505)
+|+||+|||+. .+.+++.++ .+.+ +|++|||++|. .|.++.+..+.+++ +++.++++
T Consensus 91 -aDvVilavp~~-~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a 167 (245)
T 3dtt_A 91 -AELVVNATEGA-SSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNA 167 (245)
T ss_dssp -CSEEEECSCGG-GHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCH
T ss_pred -CCEEEEccCcH-HHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCH
Confidence 99999999996 566777788 7777 89999999954 33334444444444 37889999
Q ss_pred CCCCChhhhhcCC-cccCCC-CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHH
Q 010652 132 GVSGGEEGARHGP-SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD 198 (505)
Q Consensus 132 pvsgg~~~a~~G~-~i~~gg-~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~ 198 (505)
|+++++..+..|+ .++++| ++++++.++++|+.++. ..++++|+.|+|+.+|+++|.+....
T Consensus 168 ~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~-----~~~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 168 SLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGH-----QDVIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp HHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTC-----CCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred HHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCC-----CceeccCcHHHHHHhhhhHHHHHHHH
Confidence 9999999888888 777655 68999999999999992 14789999999999999999876554
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-21 Score=200.51 Aligned_cols=253 Identities=16% Similarity=0.122 Sum_probs=182.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLS 69 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~---------------~~~~g~~~i~~~~s~~e~v~~ 69 (505)
.|.+|+|||+|+||.++|..|+++||+|+++|+++++++.+.+. ....| ++.+++++++.++.
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g--~l~~tt~~~~ai~~ 97 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSG--RLSFAESAEEAVAA 97 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEECSSHHHHHHT
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcC--CeeEEcCHHHHHhc
Confidence 45689999999999999999999999999999999998877531 11112 57888899998887
Q ss_pred cCCCcEEEEecCCC---------chHHHHHHHHhhccC---CCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 70 IQRPRSVIILVKAG---------SPVDQTIAALSEHMS---PGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 70 l~~advIil~vp~~---------~~v~~vl~~l~~~l~---~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+|++|+|||++ ..++++.+.+.+.+. +|++||..||+.|.+|+++...+.++...-.+..+...|
T Consensus 98 ---ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~P 174 (444)
T 3vtf_A 98 ---TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNP 174 (444)
T ss_dssp ---SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECC
T ss_pred ---CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCc
Confidence 99999999875 247777788887764 689999999999999998765543321111122233333
Q ss_pred hhhhcC---------CcccCCC-CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHH
Q 010652 138 EGARHG---------PSLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 138 ~~a~~G---------~~i~~gg-~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
+..+.| +.++.|+ ++.+.+.++.+++.+. ..++.. +..+++++|++.|.+.+..+++++|...
T Consensus 175 Erl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~------~~~~~~-~~~~AE~~Kl~eN~~ravnIa~~NEla~ 247 (444)
T 3vtf_A 175 EFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVD------APKLVM-KPREAELVKYASNVFLALKISFANEVGL 247 (444)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSC------SCEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccC------CCEEEe-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 2455564 6677788888887765 344444 4578999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhH
Q 010652 208 VLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 208 l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
+|++.| +|..++.+.+.. ....+. ..+...-.+++...- +|. +.....|.++|++.+++.
T Consensus 248 ice~~G-iDv~eV~~a~~~-d~rig~--------~~l~PG~G~GG~Cip----kD~------~~L~~~a~~~g~~~~li~ 307 (444)
T 3vtf_A 248 LAKRLG-VDTYRVFEAVGL-DKRIGR--------HYFGAGLGFGGSCFP----KDT------LAFIRFGESLGLEMAISK 307 (444)
T ss_dssp HHHHTT-CCHHHHHHHHHT-STTSCS--------TTCCCSSCCCTTTHH----HHH------HHHHHHHHHTTCCCHHHH
T ss_pred HHHHcC-CCHHHHHHHhcc-CCCCCC--------CCCCCCCCCCCcccC----cCH------HHHHHHHHhcCCCHHHHH
Confidence 999999 999999988731 011111 123322225554332 232 134568899999999988
Q ss_pred HH
Q 010652 288 AS 289 (505)
Q Consensus 288 ~A 289 (505)
++
T Consensus 308 a~ 309 (444)
T 3vtf_A 308 AV 309 (444)
T ss_dssp HH
T ss_pred hh
Confidence 65
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=198.05 Aligned_cols=260 Identities=17% Similarity=0.151 Sum_probs=176.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC------CeeeeCCHHHHHhhcCCCcEEEE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL------PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~------~i~~~~s~~e~v~~l~~advIil 78 (505)
+||||+|||+|.||..+|..|+++|++|++|||++++.+.+.+.+...... ++.. .+.+++.+.++.+|+||+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPI-FSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCE-ECGGGCCTTSCCCSEEEE
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEeccee-ecchhhcccCCCCCEEEE
Confidence 357999999999999999999999999999999999988887654210000 0111 144455443345999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCC--hhhhhcCC-ccc--CC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGG--EEGARHGP-SLM--PG 149 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg--~~~a~~G~-~i~--~g 149 (505)
+||+. .++++++++.+.+.++++||+.+|+.. ..+.+.+.+.+. |..+.++++++. ......|. .++ .|
T Consensus 81 ~v~~~-~~~~v~~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~ 158 (316)
T 2ew2_A 81 LTKAQ-QLDAMFKAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDP 158 (316)
T ss_dssp CSCHH-HHHHHHHHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSG
T ss_pred Eeccc-cHHHHHHHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCC
Confidence 99984 789999999999999999999988754 334444444433 333344445442 11223444 443 46
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHH---------------------HHHHHHHHHHHHHH
Q 010652 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI---------------------EYGDMQLISEAYDV 208 (505)
Q Consensus 150 g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i---------------------~~~~~~~i~Ea~~l 208 (505)
++++.++.++++|+.++ ..+.+.++.+.+.+.|++.|.+ .....+++.|+..+
T Consensus 159 ~~~~~~~~~~~ll~~~g------~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~l 232 (316)
T 2ew2_A 159 SGKKFALEVVDVFQKAG------LNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAV 232 (316)
T ss_dssp GGHHHHHHHHHHHHHTT------CCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCC------CCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 68889999999999999 6788888889999999999964 24567889999999
Q ss_pred HHHhCCCCH--HHHHHHHHHhccCC--cchhhHhhhhhh-cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCc
Q 010652 209 LKHVGGLSN--AELAEIFDEWNKGE--LESFLVEITADI-FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (505)
Q Consensus 209 ~~~~g~l~~--~~i~~~~~~~~~g~--~~s~l~~~~~~~-l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~ 283 (505)
+++.| +++ +.+.+.+..+.... ..++ ..+..++ ... +..+ +.++. | +.++.|+++|+|+
T Consensus 233 a~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~-~sm~~d~~~~g-------~~~E-~~~~~-----~-~~~~~a~~~gv~~ 296 (316)
T 2ew2_A 233 AEKEA-IYLDQAEVYTHIVQTYDPNGIGLHY-PSMYQDLIKNH-------RLTE-IDYIN-----G-AVWRKGQKYNVAT 296 (316)
T ss_dssp HHHTT-CCCCHHHHHHHHHHTTCTTTTTTSC-CHHHHHHTTTC-------CCCS-GGGTH-----H-HHHHHHHHHTCCC
T ss_pred HHHcC-CCCChHHHHHHHHHHhccccCCCCC-cHHHHHHHHcC-------Ccch-HHHHh-----h-HHHHHHHHhCCCC
Confidence 99998 886 45666654322111 1111 0111222 211 1112 23333 3 6889999999999
Q ss_pred chhHHH
Q 010652 284 PTIAAS 289 (505)
Q Consensus 284 p~i~~A 289 (505)
|+....
T Consensus 297 P~~~~~ 302 (316)
T 2ew2_A 297 PFCAML 302 (316)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 998864
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=189.26 Aligned_cols=185 Identities=11% Similarity=0.135 Sum_probs=141.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.+||.+|+ +||+|++|||++++++++.+.....---+++.++++++ +++ ||+||+|||++.++
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~---aDlVieavpe~~~v 87 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKD---CDIVMEAVFEDLNT 87 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGG---CSEEEECCCSCHHH
T ss_pred CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcC---CCEEEEcCcCCHHH
Confidence 68999999999999999999 99999999999999988876510000003677888887 565 99999999999888
Q ss_pred HHHH-HHHhhccCCCCEEE-eCCCCChhhHHHHHH-HHHHcCCeEEcCCCCCChhhhhcCC--cccCC--CCHHHHHHHH
Q 010652 87 DQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIH-EASQKGLLYLGMGVSGGEEGARHGP--SLMPG--GSFEAYNNIR 159 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiI-d~st~~~~~t~~~~~-~l~~~gi~~v~~pvsgg~~~a~~G~--~i~~g--g~~e~~~~v~ 159 (505)
+.++ .++.+. ++.+++ |+||..+....+... ..+..|.||++ |+.+ ++ .+++| ++++++++++
T Consensus 88 k~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv~~-------~~lveiv~g~~t~~~~~~~~~ 157 (293)
T 1zej_A 88 KVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PPHV-------MPLVEIVISRFTDSKTVAFVE 157 (293)
T ss_dssp HHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-STTT-------CCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-cccc-------CCEEEEECCCCCCHHHHHHHH
Confidence 8777 555554 888886 667766643322111 11234888888 5543 34 56666 5999999999
Q ss_pred HHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
++++.+| +.++++|+. |+++|.+. ..++|++.++++ | ++++++++++
T Consensus 158 ~l~~~lG------k~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-G-v~~e~id~~~ 204 (293)
T 1zej_A 158 GFLRELG------KEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-G-VRAEDVDRVW 204 (293)
T ss_dssp HHHHHTT------CEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-T-CCHHHHHHHH
T ss_pred HHHHHcC------CeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-C-CCHHHHHHHH
Confidence 9999999 889999864 66666543 568999999999 7 7999999997
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-21 Score=196.60 Aligned_cols=276 Identities=13% Similarity=0.044 Sum_probs=181.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----C---CCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G---QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g---~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+|+|||+|.||..+|.+|+++||+|++|||++++++.+.+.+... + ..++..+.+++++++. +|+||+||
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDvVilav 93 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILFVI 93 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSSEEECC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcC---CCEEEECC
Confidence 899999999999999999999999999999999988887654210 0 0035677889888776 99999999
Q ss_pred CCCchHHHHHHH----HhhccCC-CCEEEeCCCCChh-hHHHHHHHHHHc-CC---eEEcCCCCCChhhhhcCC---ccc
Q 010652 81 KAGSPVDQTIAA----LSEHMSP-GDCIIDGGNEWYL-NTERRIHEASQK-GL---LYLGMGVSGGEEGARHGP---SLM 147 (505)
Q Consensus 81 p~~~~v~~vl~~----l~~~l~~-g~iiId~st~~~~-~t~~~~~~l~~~-gi---~~v~~pvsgg~~~a~~G~---~i~ 147 (505)
|+ ..+++++.+ +.+.+.+ +++||+++++... +.+...+.+.+. +. .++..|..... ...|. .++
T Consensus 94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~--~~~g~~~~~~~ 170 (366)
T 1evy_A 94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIE--VATGVFTCVSI 170 (366)
T ss_dssp CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHH--HHTTCCEEEEE
T ss_pred Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHH--HHhCCceEEEE
Confidence 98 688999988 9888888 9999999966433 333344444433 32 23333322111 12333 344
Q ss_pred CCCCHHHHHHHHHHHHHh--hcccCCCCcEEEeCCC-----------------CchhhhhhHhHHHHHHHHHHHHHHHHH
Q 010652 148 PGGSFEAYNNIRDILQKV--AAQVDDGPCVTYIGEG-----------------GSGNFVKMVHNGIEYGDMQLISEAYDV 208 (505)
Q Consensus 148 ~gg~~e~~~~v~~ll~~i--ga~~~~~~~v~~~G~~-----------------G~g~~vK~v~N~i~~~~~~~i~Ea~~l 208 (505)
.+++++.++.++++|+.. + ..+++.++. |....+|+.+|.+......+++|+..+
T Consensus 171 ~~~~~~~~~~v~~ll~~~g~g------~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~l 244 (366)
T 1evy_A 171 ASADINVARRLQRIMSTGDRS------FVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDL 244 (366)
T ss_dssp ECSSHHHHHHHHHHHSCTTSS------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHhcCCCCe------EEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHH
Confidence 567889999999999988 6 345555542 222335677888888999999999999
Q ss_pred HHHhCCCCHHHHHHHH---HHhccCCcchhhHhhh--hhhcccccccCCchhHHHH----------HhhhCCCccHHHHH
Q 010652 209 LKHVGGLSNAELAEIF---DEWNKGELESFLVEIT--ADIFKVKDEYGEGELVDKI----------LDKTGMKGTGKWTV 273 (505)
Q Consensus 209 ~~~~g~l~~~~i~~~~---~~~~~g~~~s~l~~~~--~~~l~~~~~~~~~~~ld~i----------~~~~~~kgtg~~~~ 273 (505)
+++.| ++++++.++. ..|.. ..|.+.+.+ ...+.. ++.++.+ .++++ ..+
T Consensus 245 a~a~G-i~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~e~~~~~~------~v~ 309 (366)
T 1evy_A 245 TAALG-GDGSAVFGLAGLGDLQLT--CSSELSRNFTVGKKLGK------GLPIEEIQRTSKAVAEGVATAD------PLM 309 (366)
T ss_dssp HHHTT-CCCTTTTSTTTHHHHHHH--HTCTTSHHHHHHHHHHT------TCCHHHHHC---CCCHHHHHHH------HHH
T ss_pred HHHhC-CCCccccccccchhheee--ecCCCCchHHHHHHHhC------CCCHHHHHHHcCCeeehHHHHH------HHH
Confidence 99999 9876543210 00000 001111111 111111 1112222 23332 688
Q ss_pred HHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccC
Q 010652 274 QQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 274 ~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
+.|+++|+|+|+.... .+.+...++.+..+..++..+
T Consensus 310 ~~a~~~gv~~P~~~~v--~~~~~~~~~~~~~~~~l~~~~ 346 (366)
T 1evy_A 310 RLAKQLKVKMPLCHQI--YEIVYKKKNPRDALADLLSCG 346 (366)
T ss_dssp HHHHHHTCCCHHHHHH--HHHHHSCCCHHHHHHHHGGGC
T ss_pred HHHHHhCCCCcHHHHH--HHHHHCCCCHHHHHHHHHcCC
Confidence 9999999999999853 355556677777777776543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=184.90 Aligned_cols=198 Identities=10% Similarity=0.104 Sum_probs=161.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|+|+|+|||+ |.||..+|.+|+++|++|++|||++++.+.+.+.+ +.. .++.++++. +|+||++||+.
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~-~~~~~~~~~---aDvVi~av~~~ 78 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG-------IPL-TDGDGWIDE---ADVVVLALPDN 78 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTT-------CCC-CCSSGGGGT---CSEEEECSCHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcC-------CCc-CCHHHHhcC---CCEEEEcCCch
Confidence 4579999999 99999999999999999999999999988876532 232 366666665 99999999995
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCCh------hhhhcCC--------c--c
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGE------EGARHGP--------S--L 146 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~------~~a~~G~--------~--i 146 (505)
.++++++++.+.+.++.+|||+|+..+... +.+ + ..+..|+ .+|++|++ .....|. . +
T Consensus 79 -~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~--l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~ 153 (286)
T 3c24_A 79 -IIEKVAEDIVPRVRPGTIVLILDAAAPYAG--VMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCA 153 (286)
T ss_dssp -HHHHHHHHHGGGSCTTCEEEESCSHHHHHT--CSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEE
T ss_pred -HHHHHHHHHHHhCCCCCEEEECCCCchhHH--HHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeee
Confidence 589999999999999999999888764332 222 2 2367888 78999887 5566772 2 3
Q ss_pred cCCCCHHHHHHHHHHHHHhhcccCCCC---cEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHH
Q 010652 147 MPGGSFEAYNNIRDILQKVAAQVDDGP---CVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAE 222 (505)
Q Consensus 147 ~~gg~~e~~~~v~~ll~~iga~~~~~~---~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~-g~l~~~~i~~ 222 (505)
..+++++.++.++++|+.+| . .++++++.+.+.+.|.+.|+.....+..++|++..+... | ++++++.+
T Consensus 154 ~~~~~~~~~~~v~~l~~~~G------~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~G-l~~~~~~~ 226 (286)
T 3c24_A 154 LMQGPEEHYAIGADICETMW------SPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYG-IDRQAALD 226 (286)
T ss_dssp EEESCTHHHHHHHHHHHHHT------CSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhc------CCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 35689999999999999999 5 689999888888889999999999999999988776655 7 99999888
Q ss_pred HHH
Q 010652 223 IFD 225 (505)
Q Consensus 223 ~~~ 225 (505)
++.
T Consensus 227 ~~~ 229 (286)
T 3c24_A 227 FMI 229 (286)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-21 Score=194.94 Aligned_cols=274 Identities=11% Similarity=0.036 Sum_probs=176.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc---C-CCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE---G-QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~---g-~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|.|||+|||+|.||..||.+|+++|++|++|||++++++.+.+.+... + .+++..++++++ ++. +|+||+||
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~---aDvVil~v 88 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKK---EDILVIAI 88 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCT---TEEEEECS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcC---CCEEEEEC
Confidence 458999999999999999999999999999999999999887765210 0 002466778887 665 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChh-hHHHHHHHHHHcCCeEEcCCCCCChhhh---hcCC-c-ccCCCCHHH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGMGVSGGEEGA---RHGP-S-LMPGGSFEA 154 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~t~~~~~~l~~~gi~~v~~pvsgg~~~a---~~G~-~-i~~gg~~e~ 154 (505)
|+ .+++++++++.+ ++++||+++|+... +.+.+.+.+.+... ...++.++|..+ ..|. . +..|++.
T Consensus 89 k~-~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~--~~~~~~~~P~~~~~~~~g~~~~~~~g~~~-- 160 (335)
T 1z82_A 89 PV-QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG--CPYAVLSGPSHAEEVAKKLPTAVTLAGEN-- 160 (335)
T ss_dssp CG-GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC--CCEEEEESSCCHHHHHTTCCEEEEEEETT--
T ss_pred CH-HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC--CceEEEECCccHHHHhCCCceEEEEEehh--
Confidence 97 689998877665 78999999976433 33445555544311 122333333322 2444 3 3344433
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCC-----------------CchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEG-----------------GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~-----------------G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
++.++++|+..+ ..+++.++. |.+..+|+.+|.+......++.|+..++++.| +++
T Consensus 161 ~~~~~~ll~~~g------~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G-~~~ 233 (335)
T 1z82_A 161 SKELQKRISTEY------FRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFG-ADQ 233 (335)
T ss_dssp HHHHHHHHCCSS------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCH
T ss_pred HHHHHHHhCCCC------EEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhC-CCh
Confidence 788999998777 445544431 33355677788888889999999999999999 998
Q ss_pred HHHHHHHHHhccCCcc------hhhHhhh--hhhcccccccCCchhHHHHHhhhCC-----CccHHHHHHHHHHcCCCcc
Q 010652 218 AELAEIFDEWNKGELE------SFLVEIT--ADIFKVKDEYGEGELVDKILDKTGM-----KGTGKWTVQQAAELSVAAP 284 (505)
Q Consensus 218 ~~i~~~~~~~~~g~~~------s~l~~~~--~~~l~~~~~~~~~~~ld~i~~~~~~-----kgtg~~~~~~A~~~gvp~p 284 (505)
+++.++. +..+ |...+.+ ...+.. + +..+.+.+..++ |..| .+++.|+++|+|+|
T Consensus 234 ~~~~~l~-----~~~~~~~t~~s~~~~n~~~~~~~~~-g-----~~~~~~~~~~g~~~e~~~~~~-~v~~~a~~~gv~~P 301 (335)
T 1z82_A 234 KTFMGLA-----GIGDLMVTCNSRYSRNRRFGELIAR-G-----FNPLKLLESSNQVVEGAFTVK-AVMKIAKENKIDMP 301 (335)
T ss_dssp HHHTSTT-----THHHHHHHHHCTTCHHHHHHHHHHH-T-----CCHHHHHHTCSSCCTHHHHHH-HHHHHHHHTTCCCH
T ss_pred hhhcccc-----cccceeeeccCccCcHHHHHHHHhC-C-----CCHHHHHHhcCCeeeHHHHHH-HHHHHHHHhCCCCc
Confidence 8764421 1111 1111111 111111 1 122323222222 1122 67789999999999
Q ss_pred hhHHHHHHHHHcccchHHHHHHHHhcc
Q 010652 285 TIAASLDCRYLSGLKEEREKAAKVLKE 311 (505)
Q Consensus 285 ~i~~A~~~r~~s~~~~~r~~~~~~~~~ 311 (505)
+..+. .+.+...++.+.....+...
T Consensus 302 ~~~~v--~~~~~~~~~~~~~~~~l~~~ 326 (335)
T 1z82_A 302 ISEEV--YRVVYEGKPPLQSMRDLMRR 326 (335)
T ss_dssp HHHHH--HHHHHSCCCHHHHHHHHHC-
T ss_pred HHHHH--HHHHhCCCCHHHHHHHHHcC
Confidence 99864 35555667777777666543
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=175.85 Aligned_cols=226 Identities=15% Similarity=0.144 Sum_probs=159.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|+|||+|.||..++.+|.+.|++|.+|||++++.+++.+.. ++..+.+++++++. +|+|++++|+ .
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~D~Vi~~v~~-~ 71 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-Q 71 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-G
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc------CCEeeCCHHHHHhc---CCEEEEEeCc-H
Confidence 347999999999999999999999999999999999988877542 24556789998886 9999999995 5
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCC--CHHHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYNNIRDI 161 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg--~~e~~~~v~~l 161 (505)
.+.+++.+ +.+|++||+.+++.... .+.+.+. .+.+++. ++.+.+.....|. .+++|+ +++.++.++++
T Consensus 72 ~~~~v~~~----l~~~~~vv~~~~~~~~~--~l~~~~~-~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l 143 (259)
T 2ahr_A 72 LFETVLKP----LHFKQPIISMAAGISLQ--RLATFVG-QDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDL 143 (259)
T ss_dssp GHHHHHTT----SCCCSCEEECCTTCCHH--HHHHHHC-TTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred hHHHHHHH----hccCCEEEEeCCCCCHH--HHHHhcC-CCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHH
Confidence 67666654 34788999996554433 2333333 4556776 5666666666777 667776 89999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHh--HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchh-hHh
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVH--NGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESF-LVE 238 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~--N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~-l~~ 238 (505)
|+.+| .++++++.....++++.. |.+.+..+..++|+ +.+.| ++++++.+++. ++...++ ++.
T Consensus 144 l~~~G-------~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~G-l~~~~~~~~~~---~~~~~~~~~~~ 209 (259)
T 2ahr_A 144 TDSFG-------STFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNG-IPKAKALEIVT---QTVLASASNLK 209 (259)
T ss_dssp HHTTE-------EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHhCC-------CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH---HHHHHHHHHHH
Confidence 99998 378888766666666532 44555666666666 66788 99999888874 3333343 333
Q ss_pred hhh--h-hcccccccCCchhHHHHHhhh
Q 010652 239 ITA--D-IFKVKDEYGEGELVDKILDKT 263 (505)
Q Consensus 239 ~~~--~-~l~~~~~~~~~~~ld~i~~~~ 263 (505)
... + .++ ++.+++++.+...++++
T Consensus 210 ~~~~~p~~l~-~~~~~p~~~~~~~~~~l 236 (259)
T 2ahr_A 210 TSSQSPHDFI-DAICSPGGTTIAGLMEL 236 (259)
T ss_dssp HSSSCHHHHH-HHHCCTTSHHHHHHHHH
T ss_pred hcCCCHHHHH-HhCCCCChhHHHHHHHH
Confidence 221 2 222 23346667777666664
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-20 Score=189.00 Aligned_cols=284 Identities=11% Similarity=0.077 Sum_probs=183.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHhhccc----C---CCCeeeeCCHHH
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHRE----G---QLPLTGHYTPRD 65 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G-------~~V~v~dr~~~-----~~~~~~~~~~~~----g---~~~i~~~~s~~e 65 (505)
|+|||+|||+|.||.+||.+|+++| ++|++|||+++ +++.+.+.+... + ..++..++++++
T Consensus 20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e 99 (375)
T 1yj8_A 20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS 99 (375)
T ss_dssp SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence 4579999999999999999999999 99999999998 888776543210 0 013677788888
Q ss_pred HHhhcCCCcEEEEecCCCchHHHHHHHHhh----ccCCCCEEEeCCCCChh---hHHHHHHHHHHc-CCeEEcCCCCCCh
Q 010652 66 FVLSIQRPRSVIILVKAGSPVDQTIAALSE----HMSPGDCIIDGGNEWYL---NTERRIHEASQK-GLLYLGMGVSGGE 137 (505)
Q Consensus 66 ~v~~l~~advIil~vp~~~~v~~vl~~l~~----~l~~g~iiId~st~~~~---~t~~~~~~l~~~-gi~~v~~pvsgg~ 137 (505)
+++. +|+||++||+ ..++++++++.+ .+.++++||+++++... ..+.+.+.+.+. +. ..++..++
T Consensus 100 a~~~---aDvVilav~~-~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~---~~~v~~gp 172 (375)
T 1yj8_A 100 VIND---ADLLIFIVPC-QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNI---PCSALSGA 172 (375)
T ss_dssp HHTT---CSEEEECCCH-HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSS---CEEEEECS
T ss_pred HHcC---CCEEEEcCCH-HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCC---CEEEEeCC
Confidence 8876 9999999997 689999999998 89999999999976443 122333333332 21 12233333
Q ss_pred hhh---hcCC---cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCC-----------------CchhhhhhHhHHH
Q 010652 138 EGA---RHGP---SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG-----------------GSGNFVKMVHNGI 194 (505)
Q Consensus 138 ~~a---~~G~---~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~-----------------G~g~~vK~v~N~i 194 (505)
..+ ..|. .++.+++++..+.++++|+..+ ..+++.++. |.+.-+|+.+|..
T Consensus 173 ~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g------~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~ 246 (375)
T 1yj8_A 173 NIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPY------FKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSK 246 (375)
T ss_dssp CCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTT------EEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred chHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCC------eEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHH
Confidence 222 2232 3456678899999999999877 456665553 2223346668888
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCHHHHHH------HHHHhccCCcchhhHhhhhhhccc-ccccCCchhHHHHHhhh--C
Q 010652 195 EYGDMQLISEAYDVLKHVG-GLSNAELAE------IFDEWNKGELESFLVEITADIFKV-KDEYGEGELVDKILDKT--G 264 (505)
Q Consensus 195 ~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~------~~~~~~~g~~~s~l~~~~~~~l~~-~~~~~~~~~ld~i~~~~--~ 264 (505)
.....++++|+..++++.| |++++++.+ ++..- ....++.+ ...+.. .+.+ .++.+.+++ +
T Consensus 247 ~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~--~~~~~~~~---~~~~~~~g~~~----~~~d~~~~~~~g 317 (375)
T 1yj8_A 247 SAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSF--LAGRNAKC---SAEFIKSTPKK----TWEELENEILKG 317 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHH--SSSSHHHH---HHHHHHHTTSS----CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEee--eCCccHHH---HHHHHhcCCCC----CHHHHHHhhcCC
Confidence 8889999999999999995 598766532 22110 01111111 111111 0001 112222211 2
Q ss_pred CCccHH----HHHHHHHHcCC--CcchhHHHHHHHHHcccchHHHHHHHHhccC
Q 010652 265 MKGTGK----WTVQQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 265 ~kgtg~----~~~~~A~~~gv--p~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
++-+|. ..++.|+++|+ |+|+.... .+.+...++.+..+..+...|
T Consensus 318 ~~~E~~~~~~~v~~~a~~~gv~~~~P~~~~v--~~~~~~~~~~~~~~~~l~~~~ 369 (375)
T 1yj8_A 318 QKLQGTVTLKYVYHMIKEKNMTNEFPLFTVL--HKISFENEDPSSLLKTFMNNK 369 (375)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCGGGCHHHHHH--HHHHHSCCCTTHHHHHHSSCC
T ss_pred cEeeHHHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHhCCCCHHHHHHHHHcCc
Confidence 222111 46789999999 99998864 456666777777777766544
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-20 Score=181.30 Aligned_cols=197 Identities=16% Similarity=0.141 Sum_probs=152.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+|+|+|||+|.||..++..|+++|++ |.+|||++++.+++.+.. ++..+.+++++++. +|+||+++|+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~Dvvi~av~~~- 79 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV------EAEYTTDLAEVNPY---AKLYIVSLKDS- 79 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT------TCEEESCGGGSCSC---CSEEEECCCHH-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc------CCceeCCHHHHhcC---CCEEEEecCHH-
Confidence 46899999999999999999999999 899999999988877642 24667788887665 99999999996
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCccc-CCCCHHHHHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLM-PGGSFEAYNNIRDILQ 163 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~-~gg~~e~~~~v~~ll~ 163 (505)
.++++++++.+.++++.+|++++++.+.+. +.+.+...+..+..+|++|++.....+..++ .|++++.++.++++|+
T Consensus 80 ~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 157 (266)
T 3d1l_A 80 AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIAS 157 (266)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHH
Confidence 678899999998989999999999987654 3333333355566778887544322233444 4889999999999999
Q ss_pred HhhcccCCCCcEEEeCCCC---chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 164 KVAAQVDDGPCVTYIGEGG---SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 164 ~iga~~~~~~~v~~~G~~G---~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
.+| ..++++++.+ -...+|+++|.. +.+..++|+ ++++.| ++++++.+++.
T Consensus 158 ~~g------~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l~~~~G-l~~~~~~~l~~ 211 (266)
T 3d1l_A 158 TLS------NRVYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--LLKKYN-LPFDVMLPLID 211 (266)
T ss_dssp TTC------SCEEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHTT-CCGGGGHHHHH
T ss_pred hcC------CcEEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHcC-CCHHHHHHHHH
Confidence 999 6789998754 456789999984 345667776 567888 99998888764
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.3e-21 Score=189.85 Aligned_cols=252 Identities=19% Similarity=0.200 Sum_probs=168.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-CCee-eeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-LPLT-GHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~-~~i~-~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|||+|||+|.||..+|.+|+++|++|++|||++++.+.+...+.. +. .... ..++. +.++. +|+||++||+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~-~~~~~~~~~~~~~-~~~~~---~d~vi~~v~~~- 74 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETD-GSIFNESLTANDP-DFLAT---SDLLLVTLKAW- 74 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTT-SCEEEEEEEESCH-HHHHT---CSEEEECSCGG-
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCC-CceeeeeeeecCc-cccCC---CCEEEEEecHH-
Confidence 589999999999999999999999999999998765443222110 00 0011 23443 45555 99999999996
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--cCCeEEcCCCCCC-hhhhhcCC-cccC-CCCHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGG-EEGARHGP-SLMP-GGSFEAYNNIR 159 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~gi~~v~~pvsgg-~~~a~~G~-~i~~-gg~~e~~~~v~ 159 (505)
.++++++++.+.+.++++||+.+|+. ...+.+.+.+.+ .|..+.++...+. ...+..|. .+++ +++++.++.++
T Consensus 75 ~~~~v~~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~ 153 (291)
T 1ks9_A 75 QVSDAVKSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLA 153 (291)
T ss_dssp GHHHHHHHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHH
T ss_pred hHHHHHHHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHH
Confidence 68999999999999999999998865 232333333332 2322222222222 23344555 4443 55667788999
Q ss_pred HHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHH------------------HHHHHHHHHHHHHHHHhCCCCH--HH
Q 010652 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE------------------YGDMQLISEAYDVLKHVGGLSN--AE 219 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~------------------~~~~~~i~Ea~~l~~~~g~l~~--~~ 219 (505)
++|+.++ ..+.+.++.+.+.+.|++.|... ....+++.|+..++++.| ++. ++
T Consensus 154 ~ll~~~g------~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G-~~~~~~~ 226 (291)
T 1ks9_A 154 DILQTVL------PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREG-HHTSAED 226 (291)
T ss_dssp HHHHTTS------SCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHT-CCCCHHH
T ss_pred HHHHhcC------CCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcC-CCCCHHH
Confidence 9999998 67888888899999999999877 677899999999999998 885 45
Q ss_pred HHHHHHHh-cc-CCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 220 LAEIFDEW-NK-GELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 220 i~~~~~~~-~~-g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+.+.+... .. +...|.+. .++... + .. .++.+ .| +.++.|+++|+|+|+....
T Consensus 227 ~~~~~~~~~~~~~~~~ssm~---~d~~~g-~-~~---e~~~~--------~g-~~~~~a~~~gv~~P~~~~~ 281 (291)
T 1ks9_A 227 LRDYVMQVIDATAENISSML---QDIRAL-R-HT---EIDYI--------NG-FLLRRARAHGIAVPENTRL 281 (291)
T ss_dssp HHHHHHHHHHHTTTCCCHHH---HHHHTT-C-CC---SGGGT--------HH-HHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCChHH---HHHHcC-C-cc---HHHHH--------HH-HHHHHHHHhCCCCCHHHHH
Confidence 43332221 11 11222222 233221 1 11 22222 23 6889999999999998854
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-20 Score=185.31 Aligned_cols=253 Identities=16% Similarity=0.146 Sum_probs=168.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-----C-CcEEEEeCChhHHHHHHH-hhcccCC-------CCeeeeCCHHHHHhhc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK-----G-FPISVYNRTTSKVDETLD-RAHREGQ-------LPLTGHYTPRDFVLSI 70 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~-----G-~~V~v~dr~~~~~~~~~~-~~~~~g~-------~~i~~~~s~~e~v~~l 70 (505)
++|+|+|||+|.||..+|.+|+++ | ++|++||| +++.+.+.+ .+..... .++...++. +.+..
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~- 83 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVGT- 83 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHCC-
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccCC-
Confidence 346899999999999999999999 9 99999999 888888876 4321000 001112333 34444
Q ss_pred CCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH----cCCeEEcCCCCCC-h-hhhhcCC
Q 010652 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGG-E-EGARHGP 144 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~----~gi~~v~~pvsgg-~-~~a~~G~ 144 (505)
+|+||+|||+. .++++++.+.+.+.++++||+++|+. ...+.+.+.+.+ .|+.++++++++. . ..+..|.
T Consensus 84 --~D~vil~vk~~-~~~~v~~~i~~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~ 159 (317)
T 2qyt_A 84 --VDYILFCTKDY-DMERGVAEIRPMIGQNTKILPLLNGA-DIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRE 159 (317)
T ss_dssp --EEEEEECCSSS-CHHHHHHHHGGGEEEEEEEEECSCSS-SHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred --CCEEEEecCcc-cHHHHHHHHHhhcCCCCEEEEccCCC-CcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCc
Confidence 89999999996 57999999999998899999998875 333444444433 3455667777642 1 2223344
Q ss_pred cc-c----CCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHH-------------------HHHH
Q 010652 145 SL-M----PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEY-------------------GDMQ 200 (505)
Q Consensus 145 ~i-~----~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~-------------------~~~~ 200 (505)
.. + .+++.+.+ .+.++|+..+ ..+.+.++.+.+.+.|++.|.+.. ....
T Consensus 160 ~~~ig~~~~~~~~~~~-~~~~ll~~~g------~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~ 232 (317)
T 2qyt_A 160 LFYFGSGLPEQTDDEV-RLAELLTAAG------IRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLS 232 (317)
T ss_dssp EEEEECCSSSCCHHHH-HHHHHHHHTT------CCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHH
T ss_pred eEEEcCCCCCCcCHHH-HHHHHHHHCC------CCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 32 3 34567777 8999999998 678888889999999999998654 3458
Q ss_pred HHHHHHHHHHHhCCCCHH--HHHHHHHHhccCCcchhhHhhhhhhcccccccCCchh--HHHHHhhhCCCccHHHHHHHH
Q 010652 201 LISEAYDVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGEL--VDKILDKTGMKGTGKWTVQQA 276 (505)
Q Consensus 201 ~i~Ea~~l~~~~g~l~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~--ld~i~~~~~~kgtg~~~~~~A 276 (505)
++.|+..++++.| ++++ .+.+.+...... ....+..++. ++..++. ++.+ .| +.++.|
T Consensus 233 ~~~E~~~v~~a~G-~~~~~~~~~~~~~~~~~~-----~~~~~~sm~~---d~~~g~~~E~~~~--------~g-~~~~~a 294 (317)
T 2qyt_A 233 LLEEVAELFRAKY-GQVPDDVVQQLLDKQRKM-----PPESTSSMHS---DFLQGGSTEVETL--------TG-YVVREA 294 (317)
T ss_dssp HHHHHHHHHHHHT-SCCCSSHHHHHHHHHHHC----------------------------CTT--------TH-HHHHHH
T ss_pred HHHHHHHHHHHcC-CCCChHHHHHHHHHHhcc-----CCCCCChHHH---HHHcCCccCHHHH--------hh-HHHHHH
Confidence 9999999999998 8864 555555321110 0011111111 1212221 2222 23 788999
Q ss_pred HHcCCCcchhHHH
Q 010652 277 AELSVAAPTIAAS 289 (505)
Q Consensus 277 ~~~gvp~p~i~~A 289 (505)
+++|+|+|+....
T Consensus 295 ~~~gv~~P~~~~~ 307 (317)
T 2qyt_A 295 EALRVDLPMYKRM 307 (317)
T ss_dssp HHTTCCCHHHHHH
T ss_pred HHcCCCCCHHHHH
Confidence 9999999998753
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-19 Score=178.34 Aligned_cols=202 Identities=11% Similarity=0.038 Sum_probs=145.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC--ChhHHHHHHHhhccc--C-C-CCeeeeC--CHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR--TTSKVDETLDRAHRE--G-Q-LPLTGHY--TPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr--~~~~~~~~~~~~~~~--g-~-~~i~~~~--s~~e~v~~l~~advIil 78 (505)
|||+|||+|.||..+|.+|+++|++|++||| ++++.+.+.+.+... | . .++...+ +++++++. +|+||+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhc---CCEEEE
Confidence 4899999999999999999999999999999 999988887654210 0 0 0124555 77777765 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCC---h-hhHHHHHHHHHHc-CCeEEcCCCCCChhhh---hcCC--cccC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW---Y-LNTERRIHEASQK-GLLYLGMGVSGGEEGA---RHGP--SLMP 148 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~---~-~~t~~~~~~l~~~-gi~~v~~pvsgg~~~a---~~G~--~i~~ 148 (505)
+||+. .++++++.+.+ +.++++||+++|+. + ...+.+.+.+.+. |..+ ..++..++..+ ..|. .+++
T Consensus 78 ~v~~~-~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~~p~~~~~~~~g~~~~~~~ 154 (335)
T 1txg_A 78 GVSTD-GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRE-RTVAITGPAIAREVAKRMPTTVVF 154 (335)
T ss_dssp CSCGG-GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGG-GEEEEESSCCHHHHHTTCCEEEEE
T ss_pred cCChH-HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCC-cEEEEECCCcHHHHHccCCcEEEE
Confidence 99996 78999999999 99999999999775 3 3445556666543 3211 11222222222 1232 3444
Q ss_pred -CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCC-----------------CchhhhhhH-----hHHHHHHHHHHHHHH
Q 010652 149 -GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG-----------------GSGNFVKMV-----HNGIEYGDMQLISEA 205 (505)
Q Consensus 149 -gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~-----------------G~g~~vK~v-----~N~i~~~~~~~i~Ea 205 (505)
+++++.++.++++|+..+ ..+.+.++. |+++.+|+. +|.......++++|+
T Consensus 155 ~~~~~~~~~~~~~ll~~~g------~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~ 228 (335)
T 1txg_A 155 SSPSESSANKMKEIFETEY------FGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEM 228 (335)
T ss_dssp ECSCHHHHHHHHHHHCBTT------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHhCCCc------EEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 457888999999999887 456666654 333445777 888888889999999
Q ss_pred HHHHHHhCCCCHHHHH
Q 010652 206 YDVLKHVGGLSNAELA 221 (505)
Q Consensus 206 ~~l~~~~g~l~~~~i~ 221 (505)
..++++.| ++++++.
T Consensus 229 ~~la~~~G-~~~~~~~ 243 (335)
T 1txg_A 229 AELIEILG-GDRETAF 243 (335)
T ss_dssp HHHHHHHT-SCGGGGG
T ss_pred HHHHHHHC-CCcchhh
Confidence 99999999 9987653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-18 Score=171.62 Aligned_cols=173 Identities=15% Similarity=0.182 Sum_probs=139.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHH-HHhhcCCCcEEEEecC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD-FVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e-~v~~l~~advIil~vp 81 (505)
++++|||||+|.||.++|..|+++|+ +|++|||++++++.+.+.+.. ...+.++++ +++. +|+||+|||
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~-----~~~~~~~~~~~~~~---aDvVilavp 103 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSP 103 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCTTGGGGGC---CSEEEECSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCc-----chhcCCHHHHhhcc---CCEEEEeCC
Confidence 44789999999999999999999999 999999999998887765431 145678888 7776 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCC----hhhhh----cCC-cccC---
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGG----EEGAR----HGP-SLMP--- 148 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg----~~~a~----~G~-~i~~--- 148 (505)
.. .+.++++++.+.+.++.+|+|++++.......+.+.+.. .|++ .|+.|+ +..+. .|. .+++
T Consensus 104 ~~-~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~ 179 (314)
T 3ggo_A 104 VR-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTK 179 (314)
T ss_dssp GG-GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCT
T ss_pred HH-HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCC
Confidence 95 688899999999999999999999887666666666543 6887 688874 33333 455 4444
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHH
Q 010652 149 GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE 195 (505)
Q Consensus 149 gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~ 195 (505)
+++++.++.++++|+.+| ..++++++......+.++...-.
T Consensus 180 ~~~~~~~~~v~~l~~~~G------~~v~~~~~~~hD~~~a~~s~lph 220 (314)
T 3ggo_A 180 KTDKKRLKLVKRVWEDVG------GVVEYMSPELHDYVFGVVSHLPH 220 (314)
T ss_dssp TSCHHHHHHHHHHHHHTT------CEEEECCHHHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHHHHHH
Confidence 468999999999999999 67889988887888877765433
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-19 Score=172.12 Aligned_cols=229 Identities=14% Similarity=0.126 Sum_probs=159.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+|||+|.||..+|.+|+++| ++|++|||++++.+++.+.. ++..+.++++++ . +|+||+++| +..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~------g~~~~~~~~~~~-~---~D~vi~~v~-~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPELH-S---DDVLILAVK-PQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCCC-T---TSEEEECSC-HHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhc------CCEEeCCHHHHh-c---CCEEEEEeC-chh
Confidence 58999999999999999999999 99999999999988887641 245667777666 5 999999999 567
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCC--CHHHHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYNNIRDIL 162 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg--~~e~~~~v~~ll 162 (505)
++++++++.+ . +.+||+++++... ..+.+.+. .+.+++.+ +.+.+.....|. .+++++ +++.++.++++|
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~--~~l~~~~~-~~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~ 142 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSV--GTLSRYLG-GTRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIM 142 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCH--HHHHHHTT-SCCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCH--HHHHHHcC-CCCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHH
Confidence 8888876655 4 8999999665543 34444443 35678877 666666666676 677777 889999999999
Q ss_pred HHhhcccCCCCcEEEeC-C---------CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCc
Q 010652 163 QKVAAQVDDGPCVTYIG-E---------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGEL 232 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G-~---------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~ 232 (505)
+.+| .++ +++ + .|++. .+.+..+..+.|+ +++.| ++++++.+++... ..
T Consensus 143 ~~~g------~~~-~~~~~~~~~~~~al~g~~~-------~~~~~~~~~l~e~---~~~~G-~~~~~~~~~~~~~---~~ 201 (263)
T 1yqg_A 143 KSVG------LTV-WLDDEEKMHGITGISGSGP-------AYVFYLLDALQNA---AIRQG-FDMAEARALSLAT---FK 201 (263)
T ss_dssp HTTE------EEE-ECSSTTHHHHHHHHTTSHH-------HHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHH---HH
T ss_pred HhCC------CEE-EeCChhhccHHHHHHccHH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHH---HH
Confidence 9998 455 787 4 23332 2234455555666 67788 9999888876432 22
Q ss_pred chh-hHhhhh--h-hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 233 ESF-LVEITA--D-IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 233 ~s~-l~~~~~--~-~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
.+. ++.... + .+.. ..+++++.+...+++ ..+.|++.|+..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-------------l~~~~~~~~~~~a 247 (263)
T 1yqg_A 202 GAVALAEQTGEDFEKLQK-NVTSKGGTTHEAVEA-------------FRRHRVAEAISEG 247 (263)
T ss_dssp HHHHHHHHHCCCHHHHHH-HTCCTTSHHHHHHHH-------------HHHTTHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHH-hcCCCChhHHHHHHH-------------HHHCCHHHHHHHH
Confidence 222 333221 2 2222 224555655555444 3668899888864
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=166.34 Aligned_cols=197 Identities=14% Similarity=0.186 Sum_probs=142.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccC-C----------CCeeeeCCHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REG-Q----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~-------~~g-~----------~~i~~~~s~~e~v 67 (505)
+++|+|||+|.||.++|..|+++|++|++||+++++++++.+... ..| . .++..+.++++++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 83 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV 83 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence 468999999999999999999999999999999998877664310 000 0 0256788998887
Q ss_pred hhcCCCcEEEEecCCCch-HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-c
Q 010652 68 LSIQRPRSVIILVKAGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-S 145 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~ 145 (505)
+. +|+||++||+... .+.++.++.+.++++.++++.+++.+. .++.+.+.. ..+++++.... .+..++ .
T Consensus 84 ~~---aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~--~~la~~~~~-~~~~ig~h~~~---p~~~~~lv 154 (283)
T 4e12_A 84 KD---ADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLP--SDLVGYTGR-GDKFLALHFAN---HVWVNNTA 154 (283)
T ss_dssp TT---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH--HHHHHHHSC-GGGEEEEEECS---STTTSCEE
T ss_pred cc---CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CcceEEEccCC---CcccCceE
Confidence 76 9999999999744 455668898999999999987766643 344444432 22333322111 122344 2
Q ss_pred -ccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 146 -LMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 146 -i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
+++| .++++++.++++++.++ +.+++++..+.|.. + |.+. ...++|++.++++.+ .+++++++
T Consensus 155 evv~~~~t~~~~~~~~~~l~~~~g------~~~v~v~~~~~g~i---~-nr~~---~~~~~ea~~l~~~g~-~~~~~id~ 220 (283)
T 4e12_A 155 EVMGTTKTDPEVYQQVVEFASAIG------MVPIELKKEKAGYV---L-NSLL---VPLLDAAAELLVDGI-ADPETIDK 220 (283)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTT------CEEEECSSCCTTTT---H-HHHH---HHHHHHHHHHHHTTS-CCHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcC------CEEEEEecCCCCEE---e-hHHH---HHHHHHHHHHHHhCC-CCHHHHHH
Confidence 3333 37899999999999999 78899977777763 3 4333 346799999999988 99999999
Q ss_pred HHH
Q 010652 223 IFD 225 (505)
Q Consensus 223 ~~~ 225 (505)
++.
T Consensus 221 ~~~ 223 (283)
T 4e12_A 221 TWR 223 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=178.05 Aligned_cols=201 Identities=11% Similarity=0.019 Sum_probs=143.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHhhccc----C---CCCeeeeCCHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHRE----G---QLPLTGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-------~~V~v~dr~~~-----~~~~~~~~~~~~----g---~~~i~~~~s~~e~ 66 (505)
+|||+|||+|.||..+|.+|+++| ++|++|||+++ +.+.+.+.+... + ..++..+++++++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 468999999999999999999999 99999999998 777776532110 0 0135667888888
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCCh---hhHHHHHHHHHHc-CCeEEcCCCCCChhhh--
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY---LNTERRIHEASQK-GLLYLGMGVSGGEEGA-- 140 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~---~~t~~~~~~l~~~-gi~~v~~pvsgg~~~a-- 140 (505)
++. +|+||+|||+ ..++++++++.+.+.++++||+++|+.. ...+.+.+.+.+. +. .+++..++..+
T Consensus 88 ~~~---aD~Vilav~~-~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~---~~~v~~gp~~a~~ 160 (354)
T 1x0v_A 88 AED---ADILIFVVPH-QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGI---PMSVLMGANIASE 160 (354)
T ss_dssp HTT---CSEEEECCCG-GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTC---CEEEEECSCCHHH
T ss_pred HcC---CCEEEEeCCH-HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCC---CEEEEECCCcHHH
Confidence 776 9999999998 5899999999999999999999998653 2222233333222 31 12233333222
Q ss_pred -hcCC---cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhh-----------------hhHhHHHHHHHH
Q 010652 141 -RHGP---SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV-----------------KMVHNGIEYGDM 199 (505)
Q Consensus 141 -~~G~---~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~v-----------------K~v~N~i~~~~~ 199 (505)
..|. ..+.+++++..++++++|+..+ ..+++.++.-...+. |+.+|.......
T Consensus 161 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g------~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~ 234 (354)
T 1x0v_A 161 VADEKFCETTIGCKDPAQGQLLKELMQTPN------FRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIR 234 (354)
T ss_dssp HHTTCCEEEEEECSSHHHHHHHHHHHCBTT------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhcCCceEEEEECCHHHHHHHHHHhCCCC------EEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHH
Confidence 2342 3445678888999999999887 455555543222222 455888888889
Q ss_pred HHHHHHHHHHHHhCCC---CHHHH
Q 010652 200 QLISEAYDVLKHVGGL---SNAEL 220 (505)
Q Consensus 200 ~~i~Ea~~l~~~~g~l---~~~~i 220 (505)
.++.|+..++++.| + +++++
T Consensus 235 ~~~~E~~~la~a~G-~~~~~~~~~ 257 (354)
T 1x0v_A 235 LGLMEMIAFAKLFC-SGPVSSATF 257 (354)
T ss_dssp HHHHHHHHHHHHHS-SSCCCGGGG
T ss_pred HHHHHHHHHHHHhc-CCCCCcccc
Confidence 99999999999998 8 77654
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=167.74 Aligned_cols=195 Identities=11% Similarity=0.118 Sum_probs=139.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChh--HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G----~~V~v~dr~~~--~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+|+|+|||+|.||.+||.+|+++| ++|++|||+++ +.+.+.+.+ +..+.++.++++. +|+||+|
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G-------~~~~~~~~e~~~~---aDvVila 91 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG-------VKLTPHNKETVQH---SDVLFLA 91 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT-------CEEESCHHHHHHH---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC-------CEEeCChHHHhcc---CCEEEEE
Confidence 468999999999999999999999 89999999986 777776443 5667889888887 9999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--CCeEEcCCCCCChhhhhcCCcccCCCC---HHH
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGPSLMPGGS---FEA 154 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--gi~~v~~pvsgg~~~a~~G~~i~~gg~---~e~ 154 (505)
||+ ..++++++++.+.+.++.+||+++++.+. ..+.+.+.+. +..++.+.. ..+.....|..++.+|+ ++.
T Consensus 92 v~~-~~~~~vl~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~p-~~p~~~~~g~~v~~~g~~~~~~~ 167 (322)
T 2izz_A 92 VKP-HIIPFILDEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCMT-NTPVVVREGATVYATGTHAQVED 167 (322)
T ss_dssp SCG-GGHHHHHHHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEEC-CGGGGGTCEEEEEEECTTCCHHH
T ss_pred eCH-HHHHHHHHHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEeC-CcHHHHcCCeEEEEeCCCCCHHH
Confidence 996 68999999999999899999999887653 3445555542 345554322 22222334446666665 789
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhH--hHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV--HNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v--~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
++.++++|+.+| .++ ++.+.....+..+. .+.+.+..+..++|+ +.+.| +++++..+++.
T Consensus 168 ~~~v~~ll~~~G------~~~-~~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~G-l~~~~a~~l~~ 229 (322)
T 2izz_A 168 GRLMEQLLSSVG------FCT-EVEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMG-LPRRLAVRLGA 229 (322)
T ss_dssp HHHHHHHHHTTE------EEE-ECCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCC------CEE-EeCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999999 443 44443222333322 234444445555554 46677 99998887763
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=173.55 Aligned_cols=193 Identities=11% Similarity=0.108 Sum_probs=140.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHH--------HHHHhhcccC------CCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVD--------ETLDRAHREG------QLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~--------~~~~~~~~~g------~~~i~~~~s~~e~v~~l~ 71 (505)
+++|+|||+|.||.+||.+|+++|++|++||+++++.. ++.+.+.... ..+++.++++++ +++
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~a-l~~-- 130 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHK-LSN-- 130 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGG-CTT--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHH-Hcc--
Confidence 46899999999999999999999999999999998432 2222221000 004667788753 444
Q ss_pred CCcEEEEecCCCchHH-HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH----cCCeEEcCCCCCChhhhhcCC--
Q 010652 72 RPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHGP-- 144 (505)
Q Consensus 72 ~advIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~----~gi~~v~~pvsgg~~~a~~G~-- 144 (505)
||+||+|||+...++ .++.++.+.++++.||++.+++.+.+ ++.+.+.. .|.||++ |+. ..+
T Consensus 131 -aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~--~ia~~~~~p~r~iG~Hffn-Pv~-------~m~Lv 199 (460)
T 3k6j_A 131 -CDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN--EISSVLRDPSNLVGIHFFN-PAN-------VIRLV 199 (460)
T ss_dssp -CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHHTTSSSGGGEEEEECCS-STT-------TCCEE
T ss_pred -CCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH--HHHHhccCCcceEEEEecc-hhh-------hCCEE
Confidence 999999999976665 55688999999999998766655432 33333321 2556665 332 233
Q ss_pred cccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 145 SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
.+++| +++++++.+.++++.+| +.++++++ +.|. +.|.+.. ..++|++.++++.| ++++++++
T Consensus 200 EIv~g~~Ts~e~~~~~~~l~~~lG------k~~v~v~d-~pGf----i~Nril~---~~~~EA~~l~~~~G-a~~e~ID~ 264 (460)
T 3k6j_A 200 EIIYGSHTSSQAIATAFQACESIK------KLPVLVGN-CKSF----VFNRLLH---VYFDQSQKLMYEYG-YLPHQIDK 264 (460)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHTT------CEEEEESS-CCHH----HHHHHHH---HHHHHHHHHHHTSC-CCHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhC------CEEEEEec-ccHH----HHHHHHH---HHHHHHHHHHHHcC-CCHHHHHH
Confidence 46666 48999999999999999 88999986 6675 3344443 35799999998888 99999999
Q ss_pred HHHHh
Q 010652 223 IFDEW 227 (505)
Q Consensus 223 ~~~~~ 227 (505)
+++.+
T Consensus 265 a~~~~ 269 (460)
T 3k6j_A 265 IITNF 269 (460)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98643
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=160.04 Aligned_cols=192 Identities=15% Similarity=0.145 Sum_probs=136.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~----~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+|||+|||+|.||.+++.+|+++|+ +|++|||++++.+++.+.. ++..+.+++++++. +|+||+|||
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~------g~~~~~~~~e~~~~---aDvVilav~ 72 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY------GLTTTTDNNEVAKN---ADILILSIK 72 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH------CCEECSCHHHHHHH---CSEEEECSC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh------CCEEeCChHHHHHh---CCEEEEEeC
Confidence 4799999999999999999999999 9999999999998887542 35678899999888 999999998
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc----CCCCCChhhhhcCC-cccC--CCCHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG----MGVSGGEEGARHGP-SLMP--GGSFEA 154 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~----~pvsgg~~~a~~G~-~i~~--gg~~e~ 154 (505)
+ ..++++++++.+.+.++++||..+++... ..+.+.+. .+..++. .|++++ .|. .+++ +++++.
T Consensus 73 ~-~~~~~v~~~l~~~l~~~~~vvs~~~gi~~--~~l~~~~~-~~~~~v~~~p~~p~~~~-----~g~~~~~~~~~~~~~~ 143 (247)
T 3gt0_A 73 P-DLYASIINEIKEIIKNDAIIVTIAAGKSI--ESTENAFN-KKVKVVRVMPNTPALVG-----EGMSALCPNEMVTEKD 143 (247)
T ss_dssp T-TTHHHHC---CCSSCTTCEEEECSCCSCH--HHHHHHHC-SCCEEEEEECCGGGGGT-----CEEEEEEECTTCCHHH
T ss_pred H-HHHHHHHHHHHhhcCCCCEEEEecCCCCH--HHHHHHhC-CCCcEEEEeCChHHHHc-----CceEEEEeCCCCCHHH
Confidence 6 57899999999999999999966665543 23344443 2334433 344332 344 4444 479999
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHH
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEIFD 225 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l-~~~~g~l~~~~i~~~~~ 225 (505)
++.++++|+.+| . ++++++.-.-.++-+. +-.-+.+..+.|++.. +.+.| +++++..+++.
T Consensus 144 ~~~~~~l~~~~G------~-~~~~~e~~~d~~~a~~--g~gpa~~~~~~eal~~a~~~~G-l~~~~a~~~~~ 205 (247)
T 3gt0_A 144 LEDVLNIFNSFG------Q-TEIVSEKLMDVVTSVS--GSSPAYVYMIIEAMADAAVLDG-MPRNQAYKFAA 205 (247)
T ss_dssp HHHHHHHHGGGE------E-EEECCGGGHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCC------C-EEEeCHHHccHHHHHh--ccHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 999999999999 4 6667543211111122 1112345566777766 67788 99999998873
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=162.58 Aligned_cols=175 Identities=15% Similarity=0.172 Sum_probs=139.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh-hcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL-SIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~-~l~~advIil~vp~~ 83 (505)
++|+|||+|.||..+|..|+++|+ +|++|||++++.+.+.+.+.. ...+.+++++++ . +|+||++||+.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~---aDvVilavp~~ 73 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSPVR 73 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGGGGTC---CSEEEECSCHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc-----ccccCCHHHHhcCC---CCEEEEcCCHH
Confidence 589999999999999999999999 999999999988877654321 124567877776 6 99999999995
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCC----hhhhh----cCC-cccC---CC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGG----EEGAR----HGP-SLMP---GG 150 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg----~~~a~----~G~-~i~~---gg 150 (505)
.+.++++++.+.+.++.+|++.+++.......+.+.+.+. +++ .|+.|+ +..+. .|. .++. ++
T Consensus 74 -~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~---~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~ 149 (281)
T 2g5c_A 74 -TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT 149 (281)
T ss_dssp -HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS
T ss_pred -HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc---ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCC
Confidence 6788999999999999999999998876666666666542 665 466653 33332 565 5555 67
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHH
Q 010652 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDM 199 (505)
Q Consensus 151 ~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~ 199 (505)
+++.++.++++|+.+| ..++++++...+.++|++.|...+...
T Consensus 150 ~~~~~~~v~~l~~~~g------~~~~~~~~~~~d~~~~~~~~~~~~~a~ 192 (281)
T 2g5c_A 150 DKKRLKLVKRVWEDVG------GVVEYMSPELHDYVFGVVSHLPHAVAF 192 (281)
T ss_dssp CHHHHHHHHHHHHHTT------CEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 678888887778999999988766433
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=175.24 Aligned_cols=189 Identities=16% Similarity=0.170 Sum_probs=140.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
.++|||||+|.||.+||.+|+++|++|++||+++++++++.+.. ...|.. +++.++++++ ++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA-LA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH-hc
Confidence 46899999999999999999999999999999999988765420 001100 3567778764 45
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhccCCCCEEEe-CCCCChhhHHHHHHHHH----HcCCeEEc-CCCCCChhhhh
Q 010652 69 SIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIID-GGNEWYLNTERRIHEAS----QKGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iiId-~st~~~~~t~~~~~~l~----~~gi~~v~-~pvsgg~~~a~ 141 (505)
+ +|+||++||+...++ .++.++.+.++++.+|++ +|+..+. ++.+.+. -.|.||++ +|++
T Consensus 84 ~---aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~---~ia~~~~~p~~~ig~hf~~Pa~v~------- 150 (483)
T 3mog_A 84 A---ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT---AIAAEIKNPERVAGLHFFNPAPVM------- 150 (483)
T ss_dssp G---CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---HHTTTSSSGGGEEEEEECSSTTTC-------
T ss_pred C---CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH---HHHHHccCccceEEeeecChhhhC-------
Confidence 5 999999999986664 667889999999999865 5555432 2333222 12566666 3443
Q ss_pred cCC-cccCCC---CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 142 HGP-SLMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 142 ~G~-~i~~gg---~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
+ ..+++| ++++++.+.++++.+| +.++++++. .| |+++|.+.. .++|++.++++.+ .|+
T Consensus 151 --~Lvevv~g~~Ts~e~~~~~~~l~~~lG------k~~v~v~d~-~G---fi~Nr~l~~----~~~Ea~~l~~~g~-~~~ 213 (483)
T 3mog_A 151 --KLVEVVSGLATAAEVVEQLCELTLSWG------KQPVRCHST-PG---FIVNRVARP----YYSEAWRALEEQV-AAP 213 (483)
T ss_dssp --CEEEEEECSSCCHHHHHHHHHHHHHTT------CEEEEEESC-TT---TTHHHHTHH----HHHHHHHHHHTTC-SCH
T ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHhC------CEEEEEecc-Cc---chHHHHHHH----HHHHHHHHHHhCC-CCH
Confidence 3 445555 8999999999999999 788999863 34 566665433 6799999999988 999
Q ss_pred HHHHHHHH
Q 010652 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~~~~ 225 (505)
++++++++
T Consensus 214 ~~id~a~~ 221 (483)
T 3mog_A 214 EVIDAALR 221 (483)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-17 Score=161.93 Aligned_cols=192 Identities=12% Similarity=0.188 Sum_probs=137.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccC-----------CCCeeeeCCH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREG-----------QLPLTGHYTP 63 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~-----------~~~~~g-----------~~~i~~~~s~ 63 (505)
+++|+|||+|.||.+||..|+++|++|++|||++++++++.+ .+.... ..+++.++++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence 468999999999999999999999999999999998776432 110000 0035677888
Q ss_pred HHHHhhcCCCcEEEEecCCCchH-HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--H--cCCeEEcCCCCCChh
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--Q--KGLLYLGMGVSGGEE 138 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~--~gi~~v~~pvsgg~~ 138 (505)
++.+++ +|+||++||+..++ +.++.++.+.+.++.+|++.+++.+.. ++.+.+. + .|.||++ |+
T Consensus 95 ~~~~~~---aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~--~l~~~~~~~~~~~g~h~~~-P~----- 163 (302)
T 1f0y_A 95 ASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFN-PV----- 163 (302)
T ss_dssp HHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECS-ST-----
T ss_pred HHhhcC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH--HHHHhcCCcccEEEEecCC-Cc-----
Confidence 877766 99999999997554 456688888888899998766655432 3333222 1 1445544 22
Q ss_pred hhhcCC--cccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCC
Q 010652 139 GARHGP--SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 139 ~a~~G~--~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
..++ .++.| +++++++.+.++++.+| +.++++++. .| ++++|.+ ..+++|++.++++.+
T Consensus 164 --~~~~~~~i~~g~~~~~e~~~~~~~l~~~~G------~~~v~~~~~-~g---~i~nr~l----~~~~~Ea~~l~~~g~- 226 (302)
T 1f0y_A 164 --PVMKLVEVIKTPMTSQKTFESLVDFSKALG------KHPVSCKDT-PG---FIVNRLL----VPYLMEAIRLYERGD- 226 (302)
T ss_dssp --TTCCEEEEECCTTCCHHHHHHHHHHHHHTT------CEEEEECSC-TT---TTHHHHH----HHHHHHHHHHHHTTS-
T ss_pred --ccCceEEEeCCCCCCHHHHHHHHHHHHHcC------CceEEecCc-cc---ccHHHHH----HHHHHHHHHHHHcCC-
Confidence 1233 44555 38999999999999999 778888752 34 4454443 356899999999988
Q ss_pred CCHHHHHHHHH
Q 010652 215 LSNAELAEIFD 225 (505)
Q Consensus 215 l~~~~i~~~~~ 225 (505)
+++++++.++.
T Consensus 227 ~~~~~id~~~~ 237 (302)
T 1f0y_A 227 ASKEDIDTAMK 237 (302)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998874
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-17 Score=152.53 Aligned_cols=176 Identities=14% Similarity=0.084 Sum_probs=136.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc---cCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~---~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|||+||| +|.||..++..|+++|++|+++||++++.+++.+.... .+ .+. ..+++++++. +|+||+++|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~---~D~Vi~~~~~ 74 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDA--SIT-GMKNEDAAEA---CDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSC--CEE-EEEHHHHHHH---CSEEEECSCH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccC--CCC-hhhHHHHHhc---CCEEEEeCCh
Confidence 4899999 99999999999999999999999999988776653110 00 134 4678787777 9999999997
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChh------------hHHHHHHHHHHcCCeEEcC--CCCCChhhh--hcCC-c
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYL------------NTERRIHEASQKGLLYLGM--GVSGGEEGA--RHGP-S 145 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~------------~t~~~~~~l~~~gi~~v~~--pvsgg~~~a--~~G~-~ 145 (505)
..++++++++.+.+ ++.+|+|.++.... ..+++.+.+. +.+++.+ |+.+..... ..|. .
T Consensus 75 -~~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~ 150 (212)
T 1jay_A 75 -EHAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWD 150 (212)
T ss_dssp -HHHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEE
T ss_pred -hhHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCcc
Confidence 46788888887777 58999999996542 2456666554 4678876 665544433 4455 6
Q ss_pred ccCCCC-HHHHHHHHHHHHHh-hcccCCCCcEEEeCCCCchhhhhhHhHHHHHHH
Q 010652 146 LMPGGS-FEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD 198 (505)
Q Consensus 146 i~~gg~-~e~~~~v~~ll~~i-ga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~ 198 (505)
++++|+ ++.++.++++|+.+ | .+++++|+.++++++|++.|.+.+..
T Consensus 151 ~~~~g~~~~~~~~v~~l~~~~~G------~~~~~~~~~~~a~~~k~~~~~~~~~~ 199 (212)
T 1jay_A 151 VPVCGDDDESKKVVMSLISEIDG------LRPLDAGPLSNSRLVESLTPLILNIM 199 (212)
T ss_dssp EEEEESCHHHHHHHHHHHHHSTT------EEEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHcCC------CCceeccchhHHHHhcchHHHHHHHH
Confidence 677775 89999999999999 8 67889999999999999999876544
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=164.66 Aligned_cols=275 Identities=14% Similarity=0.061 Sum_probs=161.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc--CC-----CCe-eeeCCHHHHHhhcCCCcEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE--GQ-----LPL-TGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~--g~-----~~i-~~~~s~~e~v~~l~~advIi 77 (505)
+|||+|||+|.||..+|..|+++|++|++|||++++.+.+.+.+... +. .++ ..+.++++++.. +|+||
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi 80 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVIL 80 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEE
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhc---CCEEE
Confidence 47999999999999999999999999999999999988887652100 00 011 356788887766 99999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcC---CeEEc---CCCCCChhh---hhc-C--Cc
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG---LLYLG---MGVSGGEEG---ARH-G--PS 145 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~g---i~~v~---~pvsgg~~~---a~~-G--~~ 145 (505)
+++|+. ..+++++.+.+.+.++++||+..+..+ .+.++.+.+.+.+ +.|++ +|+++...+ +.. + ..
T Consensus 81 ~~v~~~-~~~~~~~~l~~~l~~~~~vv~~~~~~~-~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~ 158 (359)
T 1bg6_A 81 IVVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGA 158 (359)
T ss_dssp ECSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSC
T ss_pred EeCCch-HHHHHHHHHHHhCCCCCEEEEcCCCch-HHHHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecc
Confidence 999996 578899999999999999999855333 3344555565554 45654 455443221 110 0 01
Q ss_pred ccC-----CCCHHHHHHHHHHHHHhhcccCCC------C---cEEEeCCC--Cchhhhh---hH------hHHHHHHHHH
Q 010652 146 LMP-----GGSFEAYNNIRDILQKVAAQVDDG------P---CVTYIGEG--GSGNFVK---MV------HNGIEYGDMQ 200 (505)
Q Consensus 146 i~~-----gg~~e~~~~v~~ll~~iga~~~~~------~---~v~~~G~~--G~g~~vK---~v------~N~i~~~~~~ 200 (505)
+.. +++++.++.++++|..+. +... + ++++.+.. +.+...| +. .+.......+
T Consensus 159 ~~~g~~~~~~~~~~~~~l~~~~~~~~--~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 1bg6_A 159 MDFACLPAAKAGWALEQIGSVLPQYV--AVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEK 236 (359)
T ss_dssp EEEEEESGGGHHHHHHHHTTTCTTEE--ECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHH
T ss_pred eEEEeccccccHHHHHHHHHHhhhcE--EcCChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHH
Confidence 111 345556777777775432 0000 0 01111110 3333332 11 2334566788
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcch-hhHhhhhhhcccccccCCchhHH--HHHhhhCCCccHHHHHHHHH
Q 010652 201 LISEAYDVLKHVGGLSNAELAEIFDEWNKGELES-FLVEITADIFKVKDEYGEGELVD--KILDKTGMKGTGKWTVQQAA 277 (505)
Q Consensus 201 ~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s-~l~~~~~~~l~~~~~~~~~~~ld--~i~~~~~~kgtg~~~~~~A~ 277 (505)
++.|+..++++.| ++++++.+.+.........+ +....+..+++ |...+ ..++ .+.+|+. -+.| ..++.|+
T Consensus 237 ~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~--d~~~~-~e~~~~~~~~D~~-~~~g-~~~~~a~ 310 (359)
T 1bg6_A 237 VDAERIAIAKAFD-LNVPSVCEWYKESYGQSPATIYEAVQGNPAYR--GIAGP-INLNTRYFFEDVS-TGLV-PLSELGR 310 (359)
T ss_dssp HHHHHHHHHHTTT-CCCCCHHHHC-------CCSHHHHHHTCGGGT--TCBCC-SSSCCHHHHHHHH-TTHH-HHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCcHHHHHHHHhCCCcccHHHHHhcchhhc--CCCCC-CCCCccceecCcC-ccHH-HHHHHHH
Confidence 9999999999998 98876666543211111111 00001112221 11111 1233 4455441 0123 6889999
Q ss_pred HcCCCcchhHHHHHHHH
Q 010652 278 ELSVAAPTIAASLDCRY 294 (505)
Q Consensus 278 ~~gvp~p~i~~A~~~r~ 294 (505)
++|+|+|+.... ...+
T Consensus 311 ~~gv~~P~~~~l-~~~~ 326 (359)
T 1bg6_A 311 AVNVPTPLIDAV-LDLI 326 (359)
T ss_dssp HTTCCCHHHHHH-HHHH
T ss_pred HcCCCchHHHHH-HHHH
Confidence 999999998864 4433
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-17 Score=164.18 Aligned_cols=175 Identities=13% Similarity=0.141 Sum_probs=135.6
Q ss_pred cCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhh-cCCCcEEEEecCC
Q 010652 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS-IQRPRSVIILVKA 82 (505)
Q Consensus 4 ~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~-l~~advIil~vp~ 82 (505)
+..++|||||+|.||.+||++|.++|++|++|||++++.+.+.+.+ +..+.+++++++. ++.+|+||+|||.
T Consensus 6 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G-------~~~~~~~~e~~~~a~~~aDlVilavP~ 78 (341)
T 3ktd_A 6 DISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEG-------FDVSADLEATLQRAAAEDALIVLAVPM 78 (341)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTT-------CCEESCHHHHHHHHHHTTCEEEECSCH
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeeeCCHHHHHHhcccCCCEEEEeCCH
Confidence 3457999999999999999999999999999999999888776543 4557888887753 1237999999997
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCCh-hhhhc-------CC-cccCCC--
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGE-EGARH-------GP-SLMPGG-- 150 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~-~~a~~-------G~-~i~~gg-- 150 (505)
..+.++++++.+. .++.+|+|.+++.......+.+.+. +.+|++ .|++|++ .+... |. .+++.+
T Consensus 79 -~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~ 154 (341)
T 3ktd_A 79 -TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQL 154 (341)
T ss_dssp -HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred -HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCC
Confidence 5788999999886 7899999999998766655555432 578998 6999875 34332 33 444443
Q ss_pred -CHH--------HHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHH
Q 010652 151 -SFE--------AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE 195 (505)
Q Consensus 151 -~~e--------~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~ 195 (505)
+++ .++.++++|+.+| ..++++++......+.++...=.
T Consensus 155 ~~~e~~~~~~~~~~~~v~~l~~~~G------a~v~~~~~~~HD~~~A~vshlPh 202 (341)
T 3ktd_A 155 FDGTDINSTWISIWKDVVQMALAVG------AEVVPSRVGPHDAAAARVSHLTH 202 (341)
T ss_dssp TSSCCCCHHHHHHHHHHHHHHHHTT------CEEEECCHHHHHHHHHHHTHHHH
T ss_pred CChhhhccchHHHHHHHHHHHHHcC------CEEEEeCHHHHHHHHHHHhHHHH
Confidence 556 8999999999999 67889988776777766655433
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=156.82 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=131.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G----~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+|+|+|||+|.||..+|.+|+++| ++|++|||++++ . ++..+.+++++++. +|+||+|||
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~-------g~~~~~~~~~~~~~---~D~vi~~v~ 67 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------T-------TLNYMSSNEELARH---CDIIVCAVK 67 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------S-------SSEECSCHHHHHHH---CSEEEECSC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------C-------ceEEeCCHHHHHhc---CCEEEEEeC
Confidence 469999999999999999999999 799999999876 1 24667789888887 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--cCCeEE-cCCCCCChhhhhcCCcccCCC---CHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYL-GMGVSGGEEGARHGPSLMPGG---SFEAY 155 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~gi~~v-~~pvsgg~~~a~~G~~i~~gg---~~e~~ 155 (505)
+ ..++++++++.+.++++.+|.++++..+. .+.+.+.. +.++++ +.|+.++ .|..+++++ +++.+
T Consensus 68 ~-~~~~~v~~~l~~~l~~~~vv~~~~gi~~~---~l~~~~~~~~~~v~~~p~~p~~~~-----~g~~~~~~~~~~~~~~~ 138 (262)
T 2rcy_A 68 P-DIAGSVLNNIKPYLSSKLLISICGGLNIG---KLEEMVGSENKIVWVMPNTPCLVG-----EGSFIYCSNKNVNSTDK 138 (262)
T ss_dssp T-TTHHHHHHHSGGGCTTCEEEECCSSCCHH---HHHHHHCTTSEEEEEECCGGGGGT-----CEEEEEEECTTCCHHHH
T ss_pred H-HHHHHHHHHHHHhcCCCEEEEECCCCCHH---HHHHHhCCCCcEEEECCChHHHHc-----CCeEEEEeCCCCCHHHH
Confidence 6 57999999999888433344455555443 33333433 123444 2333332 345444433 78999
Q ss_pred HHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhH--hHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 156 NNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV--HNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 156 ~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v--~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
+.++++|+.+| . ++++++.....++++. .|.+.+..+..+.|+ +.+.| +++++..+++.
T Consensus 139 ~~~~~ll~~~G------~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~G-l~~~~~~~~~~ 199 (262)
T 2rcy_A 139 KYVNDIFNSCG------I-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNG-LSRELSKNLVL 199 (262)
T ss_dssp HHHHHHHHTSE------E-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHhCC------C-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999999 5 8888876555566554 356666666666665 56777 99988777763
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-17 Score=159.60 Aligned_cols=160 Identities=20% Similarity=0.231 Sum_probs=125.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+|+|||||+|.||.++|..|+++ |++|++|||++++.+.+.+.+.. ...+.+++++++. +|+||++||+.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 77 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIV-----DEATADFKVFAAL---ADVIILAVPIK 77 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSC-----SEEESCTTTTGGG---CSEEEECSCHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCc-----ccccCCHHHhhcC---CCEEEEcCCHH
Confidence 57999999999999999999988 68999999999998877654321 1356788877776 99999999995
Q ss_pred chHHHHHHHHhhc-cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCC----Chhhhh----cCC-cc---cCC
Q 010652 84 SPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSG----GEEGAR----HGP-SL---MPG 149 (505)
Q Consensus 84 ~~v~~vl~~l~~~-l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsg----g~~~a~----~G~-~i---~~g 149 (505)
.++++++++.+. +.++.+|+|++++.+..+..+.+.+.+++++|++ .|++| |+..+. .|. .+ ..+
T Consensus 78 -~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~ 156 (290)
T 3b1f_A 78 -KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCL 156 (290)
T ss_dssp -HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTT
T ss_pred -HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCC
Confidence 578999999998 9999999999998877776666666555788887 57766 333332 454 22 236
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCcEEEeCC
Q 010652 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180 (505)
Q Consensus 150 g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~ 180 (505)
++++.++.++++|+.+| ..++++++
T Consensus 157 ~~~~~~~~v~~l~~~~G------~~~~~~~~ 181 (290)
T 3b1f_A 157 TKPNTIPALQDLLSGLH------ARYVEIDA 181 (290)
T ss_dssp CCTTHHHHHHHHTGGGC------CEEEECCH
T ss_pred CCHHHHHHHHHHHHHcC------CEEEEcCH
Confidence 78899999999999999 66777765
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-15 Score=146.58 Aligned_cols=242 Identities=15% Similarity=0.126 Sum_probs=158.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~---~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|||||+|.||.+|+.+|+++|+ +|++|||++++.+++.+.. ++..+.+..++++. +|+||++||+
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~------gi~~~~~~~~~~~~---aDvVilav~p 73 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC------GVHTTQDNRQGALN---ADVVVLAVKP 73 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT------CCEEESCHHHHHSS---CSEEEECSCG
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc------CCEEeCChHHHHhc---CCeEEEEeCH
Confidence 4789999999999999999999999 9999999999998887642 35778899988887 9999999987
Q ss_pred CchHHHHHHHHhhc-cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCCc-ccCC--CCHHHHHH
Q 010652 83 GSPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYNN 157 (505)
Q Consensus 83 ~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~~-i~~g--g~~e~~~~ 157 (505)
..++++++++.+. ++++++||..+++.+. ..+.+.+.. +..++. +|. .+.....|.+ +++| .+++.++.
T Consensus 74 -~~~~~vl~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~~-~~~vvr~mPn--~p~~v~~g~~~l~~~~~~~~~~~~~ 147 (280)
T 3tri_A 74 -HQIKMVCEELKDILSETKILVISLAVGVTT--PLIEKWLGK-ASRIVRAMPN--TPSSVRAGATGLFANETVDKDQKNL 147 (280)
T ss_dssp -GGHHHHHHHHHHHHHTTTCEEEECCTTCCH--HHHHHHHTC-CSSEEEEECC--GGGGGTCEEEEEECCTTSCHHHHHH
T ss_pred -HHHHHHHHHHHhhccCCCeEEEEecCCCCH--HHHHHHcCC-CCeEEEEecC--ChHHhcCccEEEEeCCCCCHHHHHH
Confidence 6899999999998 8888899987776643 344555442 334444 232 2222233333 3444 47899999
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCCC-chhhh--hhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcch
Q 010652 158 IRDILQKVAAQVDDGPCVTYIGEGG-SGNFV--KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELES 234 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~G~~G-~g~~v--K~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s 234 (505)
++++|+.+| + +.++.++. ...+. .-.-+.+.+..+..+.|+ +.+.| +++++..++....-.
T Consensus 148 v~~l~~~iG------~-~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~G-l~~~~a~~l~~~t~~----- 211 (280)
T 3tri_A 148 AESIMRAVG------L-VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLG-LTKETAELLTEQTVL----- 211 (280)
T ss_dssp HHHHHGGGE------E-EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHCC------C-eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHHH-----
Confidence 999999999 4 55664311 11111 111123445555566665 45777 999998887632211
Q ss_pred hhHhhhhhhcccccccCCchhHHHHHh-hhCCCccHHHHHHHHHHcCCCcchhH
Q 010652 235 FLVEITADIFKVKDEYGEGELVDKILD-KTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 235 ~l~~~~~~~l~~~~~~~~~~~ld~i~~-~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
-....+...+ ..| ..+.| .....||-.-.+..-++.|++..++.
T Consensus 212 ----G~a~~~~~~~-~~p----~~l~~~v~spgGtT~~~l~~le~~g~~~~~~~ 256 (280)
T 3tri_A 212 ----GAARMALETE-QSV----VQLRQFVTSPGGTTEQAIKVLESGNLRELFIK 256 (280)
T ss_dssp ----HHHHHHHTCS-SCH----HHHHHHHCCTTSHHHHHHHHHHTTCHHHHHHH
T ss_pred ----HHHHHHHhcC-CCH----HHHHHhccCCChHHHHHHHHHHHCChHHHHHH
Confidence 1122332211 122 22222 33445666666666677788865554
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-16 Score=154.38 Aligned_cols=199 Identities=15% Similarity=0.192 Sum_probs=141.8
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccCCC-------CeeeeCC
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQL-------PLTGHYT 62 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~-----------~~~~~g~~-------~i~~~~s 62 (505)
|+.+...+|+|||+|.||..+|..++.+|++|++||++++.+++..+ .+...+.. ++..+++
T Consensus 1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~ 80 (319)
T 3ado_A 1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTN 80 (319)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECC
T ss_pred CCCCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccc
Confidence 66555678999999999999999999999999999999987554332 11100000 4677888
Q ss_pred HHHHHhhcCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--Hc--CCeEEcCC-CCCC
Q 010652 63 PRDFVLSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMG-VSGG 136 (505)
Q Consensus 63 ~~e~v~~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~--gi~~v~~p-vsgg 136 (505)
+++.+++ +|+|+.+||....++.- +.+|.+.++++.|+...|++.+.+ ++.+.+. ++ |.||+..| ++.-
T Consensus 81 l~~a~~~---ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is--~ia~~~~~p~r~ig~HffNP~~~m~L 155 (319)
T 3ado_A 81 LAEAVEG---VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPS--KLFTGLAHVKQCIVAHPVNPPYYIPL 155 (319)
T ss_dssp HHHHTTT---EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHH--HHHTTCTTGGGEEEEEECSSTTTCCE
T ss_pred hHhHhcc---CcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccch--hhhhhccCCCcEEEecCCCCccccch
Confidence 8888776 99999999999888754 488888888888877666665443 3333332 22 66777643 2222
Q ss_pred hhhhhcCCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCC
Q 010652 137 EEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 137 ~~~a~~G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.| +++| .++++++.+..+++.++ +.++.+-.+..|+.+ |.+ ...++.|++.++++.+
T Consensus 156 VE-------iv~g~~Ts~~~~~~~~~~~~~~g------k~pv~v~kd~pGFi~----NRl---~~~~~~EA~~lv~eGv- 214 (319)
T 3ado_A 156 VE-------LVPHPETSPATVDRTHALMRKIG------QSPVRVLKEIDGFVL----NRL---QYAIISEAWRLVEEGI- 214 (319)
T ss_dssp EE-------EEECTTCCHHHHHHHHHHHHHTT------CEEEECSSCCTTTTH----HHH---HHHHHHHHHHHHHTTS-
T ss_pred HH-------hcCCCCCcHHHHHHHHHHHHHhC------CccCCcCCCCCCEeH----HHH---HHHHHHHHHHHHHhCC-
Confidence 22 3444 58899999999999999 677766666677765 554 4456699999999988
Q ss_pred CCHHHHHHHHH
Q 010652 215 LSNAELAEIFD 225 (505)
Q Consensus 215 l~~~~i~~~~~ 225 (505)
.++++++.++.
T Consensus 215 as~edID~~~~ 225 (319)
T 3ado_A 215 VSPSDLDLVMS 225 (319)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999863
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-16 Score=152.27 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=133.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||..+|..|.++|++|++|||++++.+.+.+.+.. ...+.+++++ .. +|+||+++|+ ..+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~-~~---~D~vi~av~~-~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLV-----DEAGQDLSLL-QT---AKIIFLCTPI-QLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGG-TT---CSEEEECSCH-HHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCC-----ccccCCHHHh-CC---CCEEEEECCH-HHH
Confidence 589999999999999999999999999999999998887654321 1346678777 65 9999999998 478
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCC----hhhhh----cCC-ccc-C--CCCHH
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGG----EEGAR----HGP-SLM-P--GGSFE 153 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg----~~~a~----~G~-~i~-~--gg~~e 153 (505)
.++++++.+.+.++.+|+++++......+.+.+.+. ++++. |++|+ +..+. .|. .++ + +++++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~----~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~ 146 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPE 146 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC----CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHH
Confidence 899999999999999999998877665544444322 56654 77654 22222 343 333 2 46889
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHH
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDM 199 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~ 199 (505)
..+.++++|+.++ ..++++++.....++|++.|.-.+...
T Consensus 147 ~~~~v~~l~~~~g------~~~~~~~~~~~~~~~~~~~~~p~~i~~ 186 (279)
T 2f1k_A 147 QLACLRSVLEPLG------VKIYLCTPADHDQAVAWISHLPVMVSA 186 (279)
T ss_dssp HHHHHHHHHGGGT------CEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999 678888888889999999997554444
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=170.44 Aligned_cols=190 Identities=15% Similarity=0.189 Sum_probs=137.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~----------~~i~~~~s~~e~v~ 68 (505)
+++|+|||+|.||.+||.+|+++||+|++||+++++++...+. ....|. .+++.+++++ .++
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~~~ 390 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-SFR 390 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-GGT
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-HHC
Confidence 4689999999999999999999999999999999987765321 000100 0366777774 444
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH----cCCeEEcCCCCCChhhhhcC
Q 010652 69 SIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~----~gi~~v~~pvsgg~~~a~~G 143 (505)
+ +|+||++||+...++ .++.++.+.++++.+|++.+++.+.+ ++.+.+.. .|.||++ |+.. +
T Consensus 391 ~---aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~p~~~iG~hf~~-P~~~-------~ 457 (725)
T 2wtb_A 391 D---VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN--KIGERTKSQDRIVGAHFFS-PAHI-------M 457 (725)
T ss_dssp T---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH--HHTTTCSCTTTEEEEEECS-STTT-------C
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHHhcCCCCEEEecCCC-Cccc-------C
Confidence 4 999999999987665 45588888999999998766665443 23322211 2566665 4322 3
Q ss_pred C--cccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 144 P--SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 144 ~--~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
+ .++.| +++++++.+.++++.+| +.++++++. .|+ +.|.+.. ..++|+..++++ | +++++
T Consensus 458 ~lvevv~g~~t~~e~~~~~~~l~~~lG------k~~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~e~ 521 (725)
T 2wtb_A 458 PLLEIVRTNHTSAQVIVDLLDVGKKIK------KTPVVVGNC-TGF----AVNRMFF---PYTQAAMFLVEC-G-ADPYL 521 (725)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTT------CEEEEEESS-TTT----THHHHHH---HHHHHHHHHHHT-T-CCHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHhC------CEEEEECCC-ccH----HHHHHHH---HHHHHHHHHHHC-C-CCHHH
Confidence 3 45555 38999999999999999 889999873 554 3454443 457999999998 7 99999
Q ss_pred HHHHHH
Q 010652 220 LAEIFD 225 (505)
Q Consensus 220 i~~~~~ 225 (505)
+++++.
T Consensus 522 id~~~~ 527 (725)
T 2wtb_A 522 IDRAIS 527 (725)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.6e-16 Score=170.52 Aligned_cols=190 Identities=14% Similarity=0.224 Sum_probs=137.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~~----------~i~~~~s~~e~v~ 68 (505)
.++|||||+|.||.+||.+|+++||+|++||+++++++..... ....|.. +++.++++ +.++
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 392 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG 392 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence 4689999999999999999999999999999999987763210 0001100 25667777 4555
Q ss_pred hcCCCcEEEEecCCCchHHH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH----cCCeEEcCCCCCChhhhhcC
Q 010652 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~----~gi~~v~~pvsgg~~~a~~G 143 (505)
+ +|+||++||+...++. ++.++.+.++++.+|++.+++.+.+ ++.+.+.. .|.||++ |+. .+
T Consensus 393 ~---aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~~~~~ig~hf~~-P~~-------~~ 459 (715)
T 1wdk_A 393 N---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFN-PVH-------MM 459 (715)
T ss_dssp G---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCS-STT-------TC
T ss_pred C---CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH--HHHHHhcCccceEEEEccC-Ccc-------cC
Confidence 5 9999999999876654 5588888999999998766655433 23332211 2555554 332 23
Q ss_pred C--cccCCC--CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 144 P--SLMPGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 144 ~--~i~~gg--~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
+ .++.|. ++++++.+.++++.+| +.++++++. .|+ +.|.+.. ..++|+..++++ | +++++
T Consensus 460 ~lvevv~g~~t~~e~~~~~~~l~~~lG------k~~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~~~ 523 (715)
T 1wdk_A 460 PLVEVIRGEKSSDLAVATTVAYAKKMG------KNPIVVNDC-PGF----LVNRVLF---PYFGGFAKLVSA-G-VDFVR 523 (715)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTT------CEEEEEESC-TTT----THHHHHH---HHHHHHHHHHHT-T-CCHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHhC------CEeEEEcCC-CCh----hhhHHHH---HHHHHHHHHHHC-C-CCHHH
Confidence 3 455554 8999999999999999 889999863 554 3354443 467999999997 7 99999
Q ss_pred HHHHHH
Q 010652 220 LAEIFD 225 (505)
Q Consensus 220 i~~~~~ 225 (505)
+++++.
T Consensus 524 id~~~~ 529 (715)
T 1wdk_A 524 IDKVME 529 (715)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999873
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=158.00 Aligned_cols=190 Identities=16% Similarity=0.249 Sum_probs=135.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-----------hcccC----CCCeeeeCCHHHHHhhc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----------AHREG----QLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-----------~~~~g----~~~i~~~~s~~e~v~~l 70 (505)
+++|+|||+|.||.+||.+|+++|++|++||+++++++...+. +.... ......+++++ .+++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~- 114 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELST- 114 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GGTT-
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HHCC-
Confidence 4689999999999999999999999999999999887765431 10000 00123456764 3444
Q ss_pred CCCcEEEEecCCCchH-HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH----cCCeEEcCCCCCChhhhhcCC-
Q 010652 71 QRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHGP- 144 (505)
Q Consensus 71 ~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~----~gi~~v~~pvsgg~~~a~~G~- 144 (505)
+|+||++||....+ +.++.++.+.++++.+|++ +|+.+..+ ++.+.+.. .|.||+ .|+. .++
T Consensus 115 --aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf~-~P~~-------~~~l 182 (463)
T 1zcj_A 115 --VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHFF-SPAH-------VMRL 182 (463)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEEC-SSTT-------TCCE
T ss_pred --CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeecC-CCcc-------ccee
Confidence 99999999987544 4566888888999999987 44444443 55443321 256665 3433 223
Q ss_pred -cccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 010652 145 -SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 145 -~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
.++.| +++++++.++++++.++ +.++++++ ..|. +.|.+... .++|++.++++ | ++++++.
T Consensus 183 vevv~g~~t~~e~~~~~~~l~~~lG------k~~v~v~~-~~gf----i~Nrll~~---~~~ea~~l~~~-G-~~~~~id 246 (463)
T 1zcj_A 183 LEVIPSRYSSPTTIATVMSLSKKIG------KIGVVVGN-CYGF----VGNRMLAP---YYNQGFFLLEE-G-SKPEDVD 246 (463)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTT------CEEEEBCC-STTT----THHHHHHH---HHHHHHHHHHT-T-CCHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhC------CEEEEECC-CccH----HHHHHHHH---HHHHHHHHHHc-C-CCHHHHH
Confidence 45554 79999999999999999 78899986 4555 34554443 35999999887 7 9999999
Q ss_pred HHHH
Q 010652 222 EIFD 225 (505)
Q Consensus 222 ~~~~ 225 (505)
++++
T Consensus 247 ~~~~ 250 (463)
T 1zcj_A 247 GVLE 250 (463)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-17 Score=158.07 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=115.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.|+|+|||+|.||..+|.+|.+.|++|++|||+++ .+.+...+ +... +++++++. +|+||++||+. +
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g-------~~~~-~~~~~~~~---aDvVilav~~~-~ 85 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRG-------AEVL-CYSEAASR---SDVIVLAVHRE-H 85 (201)
Confidence 46899999999999999999999999999999987 44443322 3334 67777665 99999999985 6
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC--------------hhhhhcCC--cccCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG--------------EEGARHGP--SLMPG 149 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg--------------~~~a~~G~--~i~~g 149 (505)
++.++ ++.+ +.++++|||++|+.+... +.+.+..+++.++.++ ..+...|. .+++|
T Consensus 86 ~~~v~-~l~~-~~~~~ivI~~~~G~~~~~------~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g 157 (201)
T 2yjz_A 86 YDFLA-ELAD-SLKGRVLIDVSNNQKMNQ------YPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCG 157 (201)
Confidence 77776 4544 347899999999986422 1111222222222221 11222222 67888
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhH
Q 010652 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 150 g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v 190 (505)
++++.++.++++|+.+| ..++++|+.|.|.++|.+
T Consensus 158 ~~~~~~~~v~~ll~~~G------~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 158 NDSKAKDRVMDIARTLG------LTPLDQGSLVAAKEIENY 192 (201)
Confidence 89999999999999999 788999999999999876
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=154.95 Aligned_cols=255 Identities=16% Similarity=0.177 Sum_probs=158.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc---C---CCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE---G---QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~---g---~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+|||+|||+|.||..+|..|+++|++|++|+|+ ++.+.+.+.+... + ..++..+++++++ .. +|+||++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~D~Vila 77 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-GE---QDVVIVA 77 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-CC---CSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-CC---CCEEEEe
Confidence 479999999999999999999999999999996 6677766544210 0 0023345677764 44 9999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCCh------------------hhHHHHHHHHHHcC----CeEEcCCCCCCh
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY------------------LNTERRIHEASQKG----LLYLGMGVSGGE 137 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~------------------~~t~~~~~~l~~~g----i~~v~~pvsgg~ 137 (505)
||+ .+++++++.+.+.+.++.+||...|+.+ ...+.+.+.+.... +.+.++..++..
T Consensus 78 vk~-~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg 156 (335)
T 3ghy_A 78 VKA-PALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPG 156 (335)
T ss_dssp CCH-HHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTT
T ss_pred CCc-hhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCc
Confidence 999 5889999999999999999999999852 11223344443221 111112122211
Q ss_pred hhhhcCC-cccC----CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH--------------------
Q 010652 138 EGARHGP-SLMP----GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN-------------------- 192 (505)
Q Consensus 138 ~~a~~G~-~i~~----gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N-------------------- 192 (505)
.....+. .+.. +.+.+..+.+..+|+..+ ..+....+.-...+.|++-|
T Consensus 157 ~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~ 230 (335)
T 3ghy_A 157 HIRHGNGRRLILGEPAGGASPRLASIAALFGRAG------LQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDD 230 (335)
T ss_dssp EEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTT------CEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHS
T ss_pred EEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCC------CCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcC
Confidence 1111222 2333 334567788889998877 45555555455556665444
Q ss_pred -HHHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHH
Q 010652 193 -GIEYGDMQLISEAYDVLKHVGGLSNA-ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGK 270 (505)
Q Consensus 193 -~i~~~~~~~i~Ea~~l~~~~g~l~~~-~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~ 270 (505)
.....+..++.|+..++++.| ++++ +..+++....... ....++..++...++ .-.+|.+..
T Consensus 231 ~~~~~l~~~~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~----~tEid~i~G--------- 294 (335)
T 3ghy_A 231 PLVSAFCLAVMAEAKAIGARIG-CPIEQSGEARSAVTRQLG--AFKTSMLQDAEAGRG----PLEIDALVA--------- 294 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-CCCCSCHHHHHHHHHTTC--SCCCTTTC-----CC----CCCHHHHTH---------
T ss_pred hHHHHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHhccC--CCCcHHHHHHHcCCC----CchHHHHhh---------
Confidence 234556789999999999988 7632 1222222111111 111233344443320 146787765
Q ss_pred HHHHHHHHcCCCcchhHH
Q 010652 271 WTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 271 ~~~~~A~~~gvp~p~i~~ 288 (505)
+.++.|+++|+|+|+...
T Consensus 295 ~vv~~a~~~gv~~P~~~~ 312 (335)
T 3ghy_A 295 SVREIGLHVGVPTPQIDT 312 (335)
T ss_dssp HHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHhCCCCCHHHH
Confidence 478999999999999875
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=150.69 Aligned_cols=252 Identities=14% Similarity=0.140 Sum_probs=161.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC----C--CCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG----Q--LPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g----~--~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++||+|||+|.||..+|..|+++|++|++| +++++++.+.+.+.... . .++..++++++ +.. +|+||++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~---~D~vila 93 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQG---ADLVLFC 93 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTT---CSEEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCC---CCEEEEE
Confidence 579999999999999999999999999999 99999888876543210 0 02344566654 343 9999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc---CCeEEcCCCCCChhhhhcCC-cccCCCCHHHH
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK---GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAY 155 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~---gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~ 155 (505)
||+. +++++++.+.+.+.++++||..+|+.... ..+.+.+.++ ++.+..+-.+|.......+. .+.+|. .+..
T Consensus 94 vk~~-~~~~~l~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~~ 170 (318)
T 3hwr_A 94 VKST-DTQSAALAMKPALAKSALVLSLQNGVENA-DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TSHG 170 (318)
T ss_dssp CCGG-GHHHHHHHHTTTSCTTCEEEEECSSSSHH-HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CTTT
T ss_pred cccc-cHHHHHHHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CHHH
Confidence 9996 79999999999999999999999987543 2444444211 11112222222111111122 233444 3445
Q ss_pred HHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHH---------------------HHHHHHHHHHHHHHHHHhCC
Q 010652 156 NNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI---------------------EYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 156 ~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i---------------------~~~~~~~i~Ea~~l~~~~g~ 214 (505)
+.+.++|...+ ..+....+.-...+.|++-|.. ......++.|+..++++.|
T Consensus 171 ~~l~~~l~~~~------~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G- 243 (318)
T 3hwr_A 171 ANLAAIFAAAG------VPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEG- 243 (318)
T ss_dssp HHHHHHHHHTT------CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCC------CCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcC-
Confidence 67888888777 4566655666677888877732 2335578899999999988
Q ss_pred CCHH--HHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 215 LSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 215 l~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
++.+ ....++....... ....++..++...+. -.+|.+.. +.++.|+++|+|+|+...
T Consensus 244 ~~l~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP~~~~ 303 (318)
T 3hwr_A 244 VKLPDDVALAIRRIAETMP--RQSSSTAQDLARGKR-----SEIDHLNG---------LIVRRGDALGIPVPANRV 303 (318)
T ss_dssp CCCCTTHHHHHHHHHHHST--TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHH
T ss_pred CCCChHHHHHHHHHHHhcC--CCCcHHHHHHHcCCh-----hHHHHHHH---------HHHHHHHHhCCCCcHHHH
Confidence 7632 1222221111111 122334445544322 35666654 578999999999999875
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=157.43 Aligned_cols=183 Identities=9% Similarity=0.035 Sum_probs=123.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+|+|||||+|.||..|+..|+++ ++| .+|||++++.+++.+.. +. .+.+++++++. +|+||++||+.
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~------g~-~~~~~~~~~~~---~DvVilav~~~- 69 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVY------GG-KAATLEKHPEL---NGVVFVIVPDR- 69 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHT------CC-CCCSSCCCCC------CEEECSCTT-
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHc------CC-ccCCHHHHHhc---CCEEEEeCChH-
Confidence 46999999999999999999999 999 59999999988876532 23 45667666655 99999999996
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhh--cCCcccCCCCHHHHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR--HGPSLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~--~G~~i~~gg~~e~~~~v~~ll 162 (505)
.+.+++.++. .++++||++|++.+.+..+.. ..+..+...+++|++.... .+..++++++++.++.+++++
T Consensus 70 ~~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (276)
T 2i76_A 70 YIKTVANHLN---LGDAVLVHCSGFLSSEIFKKS----GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIA 142 (276)
T ss_dssp THHHHHTTTC---CSSCCEEECCSSSCGGGGCSS----SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHhc---cCCCEEEECCCCCcHHHHHHh----hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHH
Confidence 5777776654 578999999987665442211 1112223346777554433 333567778888899999999
Q ss_pred HHhhcccCCCCcEEEeCCCCch---hhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010652 163 QKVAAQVDDGPCVTYIGEGGSG---NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G~~G~g---~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
+.+| ..++++++.+.. ...+++.|.+. .++.|+..++.+.| ++.+
T Consensus 143 ~~lG------~~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~G-l~~~ 190 (276)
T 2i76_A 143 EEIS------GKYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLG-LDEP 190 (276)
T ss_dssp HHHC------SCEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTT-CSCH
T ss_pred HHhC------CCEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CChH
Confidence 9999 678899864322 23366767543 35678888898888 9977
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-16 Score=151.12 Aligned_cols=160 Identities=15% Similarity=0.216 Sum_probs=116.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v-~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
||||+|||+|.||..+|..|+++|++|.+ |||++++.+++.+... +....+..+.++. +|+||+++|. .
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g------~~~~~~~~~~~~~---aDvVilavp~-~ 92 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFG------ASVKAVELKDALQ---ADVVILAVPY-D 92 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHT------TTEEECCHHHHTT---SSEEEEESCG-G
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhC------CCcccChHHHHhc---CCEEEEeCCh-H
Confidence 57999999999999999999999999999 9999999888765421 2233344555655 9999999997 5
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCCh------------hhHHHHHHHHHHcCCeEE------cCCCCC-ChhhhhcCC-
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWY------------LNTERRIHEASQKGLLYL------GMGVSG-GEEGARHGP- 144 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~------------~~t~~~~~~l~~~gi~~v------~~pvsg-g~~~a~~G~- 144 (505)
.+.+++.++.+ + ++++|||+++..+ ...+.+.+.+.. ..++ .+++.. ++. ...++
T Consensus 93 ~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~~v~~~g~~-~~~~~~ 167 (220)
T 4huj_A 93 SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AKVVKAFNTLPAAVLAADPD-KGTGSR 167 (220)
T ss_dssp GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CEEEEESCSSCHHHHTSCSB-CSSCEE
T ss_pred HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CCEEECCCCCCHHHhhhCcc-cCCCCe
Confidence 78888888777 5 6899999998873 144555555542 2222 222222 222 22233
Q ss_pred -cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhh
Q 010652 145 -SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186 (505)
Q Consensus 145 -~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~ 186 (505)
.++.|.++++.+.++++++.+| ..++++|+.+.|..
T Consensus 168 ~v~~~g~~~~~~~~v~~l~~~~G------~~~~~~G~l~~a~~ 204 (220)
T 4huj_A 168 VLFLSGNHSDANRQVAELISSLG------FAPVDLGTLAASGP 204 (220)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT------CEEEECCSHHHHHH
T ss_pred eEEEeCCCHHHHHHHHHHHHHhC------CCeEeeCChhhcch
Confidence 4456678899999999999999 88999999766654
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-14 Score=144.87 Aligned_cols=253 Identities=11% Similarity=0.097 Sum_probs=158.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CCC---CeeeeCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQL---PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g~~---~i~~~~s~~e~v~~l~~advIil 78 (505)
+|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.+... |.. ++..++++++ +.. +|+||+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~---~D~vil 75 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGP---MDLVLV 75 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCC---CSEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCC---CCEEEE
Confidence 4799999999999999999999999999999986 36665544210 100 1223456655 343 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccC----C
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMP----G 149 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~----g 149 (505)
+||.. +++++++.+.+.+.++++||...|+... .+.+.+.+... ++.++++-.++.......++ .+.. +
T Consensus 76 avk~~-~~~~~l~~l~~~l~~~~~iv~l~nGi~~-~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~ 153 (312)
T 3hn2_A 76 GLKTF-ANSRYEELIRPLVEEGTQILTLQNGLGN-EEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLP 153 (312)
T ss_dssp CCCGG-GGGGHHHHHGGGCCTTCEEEECCSSSSH-HHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSC
T ss_pred ecCCC-CcHHHHHHHHhhcCCCCEEEEecCCCCc-HHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCC
Confidence 99995 6889999999999999999999998732 23444444332 22233333333211112222 2333 3
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHH---------------------HHHHHHHHHHHHHHH
Q 010652 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYDV 208 (505)
Q Consensus 150 g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~---------------------i~~~~~~~i~Ea~~l 208 (505)
.+.+..+.+..+|+..+ ..+.+..+.-...+-|++-|. ....+..++.|+.++
T Consensus 154 ~~~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~v 227 (312)
T 3hn2_A 154 RDTGRIEELAAMFRQAG------VDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAG 227 (312)
T ss_dssp CCSHHHHHHHHHHHHTT------CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCC------CCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHH
Confidence 45667788889998877 445544444445556655543 334456788999999
Q ss_pred HHHhC---CCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcch
Q 010652 209 LKHVG---GLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPT 285 (505)
Q Consensus 209 ~~~~g---~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~ 285 (505)
+++.| .++.+.+..++....... ....++..++...+. -.+|.+.. +.++.|+++|+|+|+
T Consensus 228 a~a~G~~~~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~ 291 (312)
T 3hn2_A 228 ANAQGLATFIADGYVDDMLEFTDAMG--EYKPSMEIDREEGRP-----LEIAAIFR---------TPLAYGAREGIAMPR 291 (312)
T ss_dssp HHTSCCSSCCCTTHHHHHHHHHTTSC--SCCCHHHHHHHTTCC-----CCHHHHTH---------HHHHHHHHTTCCCHH
T ss_pred HHHcCCccCCCHHHHHHHHHHHhcCC--CCCchHHHHHHhCCC-----ccHHHHhh---------HHHHHHHHhCCCCCH
Confidence 99876 233333333333222211 112234445544322 36777765 578999999999999
Q ss_pred hHH
Q 010652 286 IAA 288 (505)
Q Consensus 286 i~~ 288 (505)
...
T Consensus 292 ~~~ 294 (312)
T 3hn2_A 292 VEM 294 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-15 Score=148.19 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=134.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++++|+||| +|.||.++|..|+++|++|++|||+++. ++++++.. +|+||+|||..
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~--------------------~~~~~~~~---aDvVilavp~~ 76 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------------------VAESILAN---ADVVIVSVPIN 76 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------------------GHHHHHTT---CSEEEECSCGG
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc--------------------CHHHHhcC---CCEEEEeCCHH
Confidence 346899999 9999999999999999999999998641 34455555 99999999995
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-ccc-CCCCHHHHHHHHH
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLM-PGGSFEAYNNIRD 160 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~-~gg~~e~~~~v~~ 160 (505)
.+.++++++.+.+.++.+|+|.+++.....+.+.+. .+.+|++ .|++|.+.....|. .++ ++.+++.++.+++
T Consensus 77 -~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~---~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~ 152 (298)
T 2pv7_A 77 -LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLE 152 (298)
T ss_dssp -GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHH
T ss_pred -HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh---cCCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHH
Confidence 699999999999999999999988876555444433 2467877 48887765555665 444 3447888999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
+|+.+| ..++++++......++++.++-.+.... +.|++ .+.| ++.++..+
T Consensus 153 l~~~~G------~~~~~~~~~~~d~~~a~~~~~p~~~a~~-l~~~l---~~~g-~~~~~~~~ 203 (298)
T 2pv7_A 153 QIQIWG------AKIYQTNATEHDHNMTYIQALRHFSTFA-NGLHL---SKQP-INLANLLA 203 (298)
T ss_dssp HHHHTT------CEEEECCHHHHHHHHHHHTHHHHHHHHH-HHHHH---TTSS-CCHHHHHH
T ss_pred HHHHcC------CEEEECCHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhcC-CCHHHHHh
Confidence 999999 6778888766677888887775554332 22332 2355 77765544
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-16 Score=148.88 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=120.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++++|+|||+|.||..++..|+++|++|+++||++++.+++.+.+ +... +.+++++. +|+||+++|. .
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~~-~~~~~~~~---~DvVi~av~~-~ 94 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSA-------AQVT-FQEEAVSS---PEVIFVAVFR-E 94 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTT-------SEEE-EHHHHTTS---CSEEEECSCG-G
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------Ccee-cHHHHHhC---CCEEEECCCh-H
Confidence 347899999999999999999999999999999999887765432 3444 77777665 9999999997 4
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHH----HHHHHHHc--CCeEEc--CCCCCCh--hhhhcCC--cccCCCCH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTER----RIHEASQK--GLLYLG--MGVSGGE--EGARHGP--SLMPGGSF 152 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~----~~~~l~~~--gi~~v~--~pvsgg~--~~a~~G~--~i~~gg~~ 152 (505)
.++.+++ +.+.+ ++.+|||++++.+..+.+ ..+.+.+. +.+++. .++++.. ++...|+ .++.|+++
T Consensus 95 ~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~ 172 (215)
T 2vns_A 95 HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQP 172 (215)
T ss_dssp GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCH
T ss_pred HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCH
Confidence 5666665 55556 799999999998755421 11222211 223332 1222111 1222333 56778899
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH
Q 010652 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN 192 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N 192 (505)
+.++.++++|+.+| .+++++|+.|+|+.++.+.+
T Consensus 173 ~~~~~v~~ll~~~G------~~~~~~g~~~~~~~~e~~~~ 206 (215)
T 2vns_A 173 EAKRAVSEMALAMG------FMPVDMGSLASAWEVEAMPL 206 (215)
T ss_dssp HHHHHHHHHHHHTT------CEEEECCSGGGHHHHHHSCC
T ss_pred HHHHHHHHHHHHcC------CceEeecchhhhhHhhhhhh
Confidence 99999999999999 78999999999999876543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-15 Score=148.50 Aligned_cols=251 Identities=16% Similarity=0.121 Sum_probs=161.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----cCCC---CeeeeCCHHHHHhhcCCCcEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----EGQL---PLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~-----~g~~---~i~~~~s~~e~v~~l~~advIi 77 (505)
+|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.+.. .|.. .+..+.+++++.+. +|+||
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~---~DlVi 76 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETK---PDCTL 76 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSC---CSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCC---CCEEE
Confidence 4799999999999999999999999999999986 3556554321 1100 12345667665534 99999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC------hhhhhcCC-cccC--
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG------EEGARHGP-SLMP-- 148 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg------~~~a~~G~-~i~~-- 148 (505)
++||.. +++++++.+.+.+.++++||...|+.... +.+.+.+... .++.+++.-+ .+-...++ .+..
T Consensus 77 lavK~~-~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~-~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~ 152 (320)
T 3i83_A 77 LCIKVV-EGADRVGLLRDAVAPDTGIVLISNGIDIE-PEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGN 152 (320)
T ss_dssp ECCCCC-TTCCHHHHHTTSCCTTCEEEEECSSSSCS-HHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EecCCC-ChHHHHHHHHhhcCCCCEEEEeCCCCChH-HHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEec
Confidence 999996 67889999999999999999998886422 3344444432 2333332221 11122233 3333
Q ss_pred --CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHH--------------------HHHHHHHHHHHH
Q 010652 149 --GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI--------------------EYGDMQLISEAY 206 (505)
Q Consensus 149 --gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i--------------------~~~~~~~i~Ea~ 206 (505)
+.+.+..+.+..+|+..+ ..+.+..+.-...+-|++-|.. ......++.|+.
T Consensus 153 ~~~~~~~~~~~l~~~l~~~~------~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~ 226 (320)
T 3i83_A 153 YPGGVSERVKTLAAAFEEAG------IDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIR 226 (320)
T ss_dssp SSSCCCHHHHHHHHHHHHTT------SCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHhCC------CCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHH
Confidence 445677788889998877 4566655666666777766531 233557889999
Q ss_pred HHHHHhCCCCHH-H-HHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcc
Q 010652 207 DVLKHVGGLSNA-E-LAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAP 284 (505)
Q Consensus 207 ~l~~~~g~l~~~-~-i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p 284 (505)
.++++.| ++.+ + +..++....... ....++..++...+. -.+|.+.. +.++.|+++|+|+|
T Consensus 227 ~va~a~G-~~l~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P 289 (320)
T 3i83_A 227 AVAAANG-HPLPEDIVEKNVASTYKMP--PYKTSMLVDFEAGQP-----METEVILG---------NAVRAGRRTRVAIP 289 (320)
T ss_dssp HHHHHTT-CCCCTTHHHHHHHHHHHSC--CCCCHHHHHHHHTCC-----CCHHHHTH---------HHHHHHHHTTCCCH
T ss_pred HHHHHcC-CCCChHHHHHHHHHHhcCC--CCCCcHHHHHHhCCC-----chHHHHcc---------HHHHHHHHhCCCCC
Confidence 9999988 7632 2 222222111111 111233445544322 36777765 47899999999999
Q ss_pred hhHH
Q 010652 285 TIAA 288 (505)
Q Consensus 285 ~i~~ 288 (505)
+...
T Consensus 290 ~~~~ 293 (320)
T 3i83_A 290 HLES 293 (320)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-15 Score=144.18 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=114.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|+|||+|.||..+|..|+++|++|++|||+++ .++.+|+||+++|+ ..
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------------------~~~~aD~vi~av~~-~~ 69 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------------------ATTLGEIVIMAVPY-PA 69 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------------------CSSCCSEEEECSCH-HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------------------HhccCCEEEEcCCc-HH
Confidence 57899999999999999999999999999998864 11238999999995 67
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCCh-hh------------HHHHHHHHHHcCCeEEc-CCCCCChhhhh---cC--C-c
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWY-LN------------TERRIHEASQKGLLYLG-MGVSGGEEGAR---HG--P-S 145 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~-~~------------t~~~~~~l~~~gi~~v~-~pvsgg~~~a~---~G--~-~ 145 (505)
++++++++.+.++ +.+|++++|..+ .+ ++.+.+.+. +.+++. .....++..+. .| + .
T Consensus 70 ~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~ 146 (209)
T 2raf_A 70 LAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTT 146 (209)
T ss_dssp HHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECE
T ss_pred HHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCce
Confidence 8999999888887 999999999664 11 344444433 456776 22222332221 23 3 4
Q ss_pred ccCCC-CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHH
Q 010652 146 LMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI 194 (505)
Q Consensus 146 i~~gg-~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i 194 (505)
++++| +++..+.++++|+.++ ..++++++.+.+..+|++.|.+
T Consensus 147 ~~~~g~~~~~~~~v~~ll~~~G------~~~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 147 VLVAGNDDSAKQRFTRALADSP------LEVKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp EEEEESCHHHHHHHHHHTTTSS------CEEEEEESGGGHHHHHHHHHHH
T ss_pred eEEcCCCHHHHHHHHHHHHHcC------CceEeCCCHhHHHHhcchHHHH
Confidence 45555 5688999999999999 6789999999999999987764
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-15 Score=146.64 Aligned_cols=247 Identities=16% Similarity=0.122 Sum_probs=150.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|||+|||+|.||..+|..|+++|++|++|+|+++.++.....+. .......++.+.+. +.+|+||++||+. +
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~----~~~~~~~~~~~~~~--~~~D~vilavk~~-~ 74 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHA----PAQDIVVKGYEDVT--NTFDVIIIAVKTH-Q 74 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTS----CCEEEEEEEGGGCC--SCEEEEEECSCGG-G
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCe----eccceecCchHhcC--CCCCEEEEeCCcc-C
Confidence 479999999999999999999999999999999764321111110 01122223333320 2389999999995 7
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ 160 (505)
++++++.+.+.+.++++||...|+...... +... |+.++++-.+| +..+..++ .+.. ++.+..+.+..
T Consensus 75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~-pg~v~~~~~~~~~-~~~~~~~~l~~ 147 (294)
T 3g17_A 75 LDAVIPHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKG-DVVTHFRDYQLRI-QDNALTRQFRD 147 (294)
T ss_dssp HHHHGGGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEET-TEEEEEEEEEEEE-ECSHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcC-CCEEEECCCEEec-CccHHHHHHHH
Confidence 999999999999888999999998754432 2211 22222221221 11112222 2223 34455666777
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHH--------------------HHHHHHHHHHHHHHHHHHhCCCC--HH
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG--------------------IEYGDMQLISEAYDVLKHVGGLS--NA 218 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~--------------------i~~~~~~~i~Ea~~l~~~~g~l~--~~ 218 (505)
+|+.-+ ..+.+..+.-...+-|++-|. .......++.|+.+++++.| ++ .+
T Consensus 148 ~l~~~~------~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G-~~l~~~ 220 (294)
T 3g17_A 148 LVQDSQ------IDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEG-LNFSEQ 220 (294)
T ss_dssp HTTTSS------CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTT-CCCCHH
T ss_pred HHHhCC------CceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcC-CCCCHH
Confidence 776555 445555555555666666554 23345578899999999988 65 44
Q ss_pred HHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 219 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
.+.+.+....+.... ...++..++...+. -.+|.+.. +.++.|+++|+|+|+...
T Consensus 221 ~~~~~~~~~~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~~ 275 (294)
T 3g17_A 221 TVDTIMTIYQGYPDE-MGTSMYYDIVHQQP-----LEVEAIQG---------FIYRRAREHNLDTPYLDT 275 (294)
T ss_dssp HHHHHHHHHHTSCTT-CCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHhhcCCC-CCCcHHHHHHcCCC-----ccHHHhhh---------HHHHHHHHhCCCCChHHH
Confidence 444444322221111 12234445544322 25566654 578999999999999875
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=131.93 Aligned_cols=156 Identities=12% Similarity=0.142 Sum_probs=115.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..|||+|||+|.||.+||++|.++||+|++||+.. + +.. +| |++||+.
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~-------------------------~-~~~---aD--ilavP~~- 52 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE-------------------------D-IRD---FE--LVVIDAH- 52 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG-------------------------G-GGG---CS--EEEECSS-
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH-------------------------H-hcc---CC--EEEEcHH-
Confidence 45799999999999999999999999999999830 0 233 89 8999996
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCCcccCCCCHHHHHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~ 163 (505)
.+.++++++.+.+.+|.+|+|+|++..... .+.+..+|.+|++ .|+.|.. ..+.++++++++.++++++
T Consensus 53 ai~~vl~~l~~~l~~g~ivvd~sgs~~~~v---l~~~~~~g~~fvg~HPm~g~~-------~~i~a~d~~a~~~l~~L~~ 122 (232)
T 3dfu_A 53 GVEGYVEKLSAFARRGQMFLHTSLTHGITV---MDPLETSGGIVMSAHPIGQDR-------WVASALDELGETIVGLLVG 122 (232)
T ss_dssp CHHHHHHHHHTTCCTTCEEEECCSSCCGGG---GHHHHHTTCEEEEEEEEETTE-------EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCcCHHHH---HHHHHhCCCcEEEeeeCCCCc-------eeeeCCCHHHHHHHHHHHH
Confidence 799999999999999999999877654433 2233467889986 6886543 3344458889999999999
Q ss_pred HhhcccCCCCcEEEeCCCCchhh-hhhHhHHHHHHHHHHHHHHHHHHHH
Q 010652 164 KVAAQVDDGPCVTYIGEGGSGNF-VKMVHNGIEYGDMQLISEAYDVLKH 211 (505)
Q Consensus 164 ~iga~~~~~~~v~~~G~~G~g~~-vK~v~N~i~~~~~~~i~Ea~~l~~~ 211 (505)
.+| ..++++++...-.+ .-.+|+-. ...++.++..+++.
T Consensus 123 ~lG------~~vv~~~~~~hd~~~AAvsh~nh---Lv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 123 ELG------GSIVEIADDKRAQLAAALTYAGF---LSTLQRDASYFLDE 162 (232)
T ss_dssp HTT------CEECCCCGGGHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhC------CEEEEeCHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 999 67888876433222 22334333 34456777777744
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.7e-14 Score=147.90 Aligned_cols=117 Identities=7% Similarity=0.126 Sum_probs=100.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhHHHHHHHHHhcCCCCCCCc
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNPNLASLV 401 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~i---W~~GciIrs~lL~~i~~~~~~~~~~~~ll 401 (505)
.+++|++||+||++++++|+.++|+|.++++. .++|..+++++ |+.| .++|++++...+++.+++..+..+
T Consensus 178 ~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~-----~Gld~~~l~~v~~~w~~G-~~~S~l~e~~~~~l~~~D~~g~~~ 251 (484)
T 4gwg_A 178 EGAGHFVKMVHNGIEYGDMQLICEAYHLMKDV-----LGMAQDEMAQAFEDWNKT-ELDSFLIEITANILKFQDTDGKHL 251 (484)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhcCCccCCcc
Confidence 47899999999999999999999999999952 34887776655 9999 789999999999998544334577
Q ss_pred chhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010652 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~ 449 (505)
+|.+.+...++++| ||++++|+++|+|+|+|++||+ |+++++.+|.
T Consensus 252 ld~i~d~~~~kgtG--~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~ 299 (484)
T 4gwg_A 252 LPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 299 (484)
T ss_dssp GGGSCCCCCSSCTT--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhccccCcchH--HHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHH
Confidence 78788778889999 9999999999999999999999 7888777664
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=139.86 Aligned_cols=272 Identities=12% Similarity=0.009 Sum_probs=168.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--------cEEEEeCChhH-----HHHHHHhhcccCCC-------CeeeeCCHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--------PISVYNRTTSK-----VDETLDRAHREGQL-------PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--------~V~v~dr~~~~-----~~~~~~~~~~~g~~-------~i~~~~s~~e~ 66 (505)
.||+|||.|.||++||..|+++|+ +|.+|.|+++. .+.+...+.+...+ ++.++++++++
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a 114 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS 114 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence 489999999999999999999875 49999988753 33333333221111 68889999999
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhH---HHHHHHHHHc-CCeE--EcCCCCCChhhh
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT---ERRIHEASQK-GLLY--LGMGVSGGEEGA 140 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t---~~~~~~l~~~-gi~~--v~~pvsgg~~~a 140 (505)
++. +|+||++||. +.++++++++.+++.++.++|.++.+....+ +.+.+.+.+. +..+ +..| +-..+-+
T Consensus 115 l~~---ad~ii~avPs-~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGP-s~A~EVa 189 (391)
T 4fgw_A 115 VKD---VDIIVFNIPH-QFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGA-NIATEVA 189 (391)
T ss_dssp HTT---CSEEEECSCG-GGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECS-CCHHHHH
T ss_pred Hhc---CCEEEEECCh-hhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCC-chHHHhh
Confidence 987 9999999999 6899999999999999999999988764322 2233333322 3332 3222 2234555
Q ss_pred hcCC-cccCCC-C---------HHHHHHHHHHHHHhh-----------cccCC-CCcEEEeCCCCchhhhhhHhHHHHHH
Q 010652 141 RHGP-SLMPGG-S---------FEAYNNIRDILQKVA-----------AQVDD-GPCVTYIGEGGSGNFVKMVHNGIEYG 197 (505)
Q Consensus 141 ~~G~-~i~~gg-~---------~e~~~~v~~ll~~ig-----------a~~~~-~~~v~~~G~~G~g~~vK~v~N~i~~~ 197 (505)
+.-| .+.++. + +...+.++.+|..=. .++.+ -|+++-++. |...-+++-.|+-.+.
T Consensus 190 ~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAa-Gi~dGlg~G~NakAAL 268 (391)
T 4fgw_A 190 QEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGC-GFVEGLGWGNNASAAI 268 (391)
T ss_dssp TTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHH
T ss_pred cCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHH-HHHhcCCCCCCHHHHH
Confidence 5555 333322 1 122345566553111 00000 034444432 5556677888999999
Q ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhccCCcchhh----Hhhh--hhhcccccccCCchhHHHHHhhh--CCCc
Q 010652 198 DMQLISEAYDVLKHV--GGLSNAELAEIFDEWNKGELESFL----VEIT--ADIFKVKDEYGEGELVDKILDKT--GMKG 267 (505)
Q Consensus 198 ~~~~i~Ea~~l~~~~--g~l~~~~i~~~~~~~~~g~~~s~l----~~~~--~~~l~~~~~~~~~~~ld~i~~~~--~~kg 267 (505)
+...++|+.+++... ||-++..+... .|.++-.+ .+++ ...+.+ .+..++.+.+.+ +|+-
T Consensus 269 itrGl~Em~rlg~al~~~g~~~tt~~gl-----aGlGDLi~Tc~sSRNr~~G~~lg~-----~G~~~~~~~~~~~~g~v~ 338 (391)
T 4fgw_A 269 QRVGLGEIIRFGQMFFPESREETYYQES-----AGVADLITTCAGGRNVKVARLMAT-----SGKDAWECEKELLNGQSA 338 (391)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHST-----TTHHHHHHHHHSSHHHHHHHHHHH-----TCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhcccCCceeecCC-----CcccceeEEecCCccHHHHHHHHh-----cCCCHHHHHHHHhCCCEE
Confidence 999999999999987 32333322111 12222111 1111 011111 234566777766 7899
Q ss_pred cHHHHHH----HHHHcCC--CcchhHHHHHHHHH
Q 010652 268 TGKWTVQ----QAAELSV--AAPTIAASLDCRYL 295 (505)
Q Consensus 268 tg~~~~~----~A~~~gv--p~p~i~~A~~~r~~ 295 (505)
+|..++. .++++|+ .+|++.+ |++-+.
T Consensus 339 EGv~ta~~v~~l~~~~~v~~emPI~~~-vy~IL~ 371 (391)
T 4fgw_A 339 QGLITCKEVHEWLETCGSVEDFPLFEA-VYQIVY 371 (391)
T ss_dssp THHHHHHHHHHHHHHHTCSTTCHHHHH-HHHHHH
T ss_pred ehHHHHHHHHHHHHHcCCCCCCCHHHH-HHHHHh
Confidence 9988886 4677899 8998875 554433
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-13 Score=135.19 Aligned_cols=192 Identities=13% Similarity=0.061 Sum_probs=126.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH-HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV-DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~-~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||+|.||.++|.+|+++|++|++|||++++. +.+.+. ++..+ +++++++. +|+|+++||+.
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~-------G~~~~-~~~e~~~~---aDvVilavp~~- 83 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAH-------GLKVA-DVKTAVAA---ADVVMILTPDE- 83 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHT-------TCEEE-CHHHHHHT---CSEEEECSCHH-
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHC-------CCEEc-cHHHHHhc---CCEEEEeCCcH-
Confidence 4689999999999999999999999999999998763 333332 24445 88888877 99999999995
Q ss_pred hHHHHHH-HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhh---hh---cCC-cc-cC--CCCH
Q 010652 85 PVDQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG---AR---HGP-SL-MP--GGSF 152 (505)
Q Consensus 85 ~v~~vl~-~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~---a~---~G~-~i-~~--gg~~ 152 (505)
...++++ ++.+.+++|.+|+|+++.. . .+.......++.++. +| +|.... .. .|. .+ .+ +.++
T Consensus 84 ~~~~v~~~~i~~~l~~~~ivi~~~gv~---~-~~~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~ 158 (338)
T 1np3_A 84 FQGRLYKEEIEPNLKKGATLAFAHGFS---I-HYNQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASG 158 (338)
T ss_dssp HHHHHHHHHTGGGCCTTCEEEESCCHH---H-HTTSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSS
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCch---h-HHHhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCH
Confidence 5688888 9999999999999985421 1 221111133566665 45 333211 11 144 33 33 4567
Q ss_pred HHHHHHHHHHHHhhcccCCCCc--EEEeCCCCchhhhhhHhH-HHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 153 EAYNNIRDILQKVAAQVDDGPC--VTYIGEGGSGNFVKMVHN-GIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~--v~~~G~~G~g~~vK~v~N-~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
++.+.++.+++.+|. .. ++.+...........+.+ .+..+.-.+++.++..+.+.| +++++.
T Consensus 159 ~a~~~~~~l~~~lG~-----~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~G-l~~~~a 223 (338)
T 1np3_A 159 NAKNVALSYACGVGG-----GRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMA 223 (338)
T ss_dssp CHHHHHHHHHHHTTH-----HHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHHHHHHcCC-----CccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHH
Confidence 888999999999993 03 555543222222333333 233334455566666667788 998755
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-13 Score=134.81 Aligned_cols=252 Identities=12% Similarity=0.010 Sum_probs=135.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee-e-eCCH-HHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-G-HYTP-RDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~-~-~~s~-~e~v~~l~~advIil~vp~ 82 (505)
+|||+|||+|.||..+|..|+ +|++|++|+|++++.+.+.+.+......+.. . ..+. .+. ...+|+||++||+
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~---~~~~D~vilavK~ 77 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSI---NSDFDLLVVTVKQ 77 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSC---CSCCSEEEECCCG
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccc---cCCCCEEEEEeCH
Confidence 579999999999999999999 9999999999998888887654310000000 0 0000 122 2348999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccCC---CCHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPG---GSFEA 154 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~g---g~~e~ 154 (505)
. +++++++.+.+. .++. ||...|+.... +.+.+.+... |+.++++-..+...-...|. .+..| ++.+.
T Consensus 78 ~-~~~~~l~~l~~~-~~~~-ivs~~nGi~~~-e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~ 153 (307)
T 3ego_A 78 H-QLQSVFSSLERI-GKTN-ILFLQNGMGHI-HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEPD 153 (307)
T ss_dssp G-GHHHHHHHTTSS-CCCE-EEECCSSSHHH-HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCGG
T ss_pred H-HHHHHHHHhhcC-CCCe-EEEecCCccHH-HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcHH
Confidence 5 789999888774 4555 88888887532 1222222211 11111111111000001111 12222 11121
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHH---------------------HHHHHHHHHHHHHHHHHHhC
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~---------------------i~~~~~~~i~Ea~~l~~~~g 213 (505)
++.+...|+.-+ -.+.+..+.-...+-|++-|. .......++.|+..+++..
T Consensus 154 ~~~l~~~l~~ag------~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~- 226 (307)
T 3ego_A 154 RLNILFQHNHSD------FPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLE- 226 (307)
T ss_dssp GGTTTTSSCCTT------SCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCS-
T ss_pred HHHHHHHhhhCC------CCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhcc-
Confidence 222222222111 223333344445566665553 2333456778888887643
Q ss_pred CCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 214 GLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 214 ~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+++++.+.+....... .....++..++...+. -.+|.|.. +.++.|+++|+|+|+....
T Consensus 227 --~~~~~~~~~~~~~~~~-~~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP~~~~l 285 (307)
T 3ego_A 227 --NEEKAWERVQAVCGQT-KENRSSMLVDVIGGRQ-----TEADAIIG---------YLLKEASLQGLDAVHLEFL 285 (307)
T ss_dssp --CHHHHHHHHHHHHHHT-TTCCCHHHHHHHHTCC-----CSHHHHHH---------HHHHHHHHTTCCCHHHHHH
T ss_pred --ChHHHHHHHHHHHHhc-CCCCchHHHHHHcCCc-----ccHHHhhh---------HHHHHHHHcCCCCcHHHHH
Confidence 3443333221111100 1112233445544322 36888875 4789999999999998853
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=137.48 Aligned_cols=193 Identities=17% Similarity=0.283 Sum_probs=137.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-----------hcccC----CCCeeeeCCHHHHHhhc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----------AHREG----QLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-----------~~~~g----~~~i~~~~s~~e~v~~l 70 (505)
..+|||||+|.||..+|..++.+|++|+++|++++.++...+. +.... ...+...++.+++.+
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 393 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELST-- 393 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGS--
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhh--
Confidence 3689999999999999999999999999999999865543321 00000 014667777776543
Q ss_pred CCCcEEEEecCCCchHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--Hc--CCeEEcCC-CCCChhhhhcCC
Q 010652 71 QRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMG-VSGGEEGARHGP 144 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~--gi~~v~~p-vsgg~~~a~~G~ 144 (505)
+|+||.+|+....++.- +.++.+.++++.|+...|++.+.+. +.+.+. ++ |.||+..| ++.-.
T Consensus 394 --aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~--ia~~~~~p~r~ig~HFfnP~~~m~LV------- 462 (742)
T 3zwc_A 394 --VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDD--IASSTDRPQLVIGTHFFSPAHVMRLL------- 462 (742)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH--HHTTSSCGGGEEEEECCSSTTTCCEE-------
T ss_pred --CCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHH--HHhhcCCccccccccccCCCCCCceE-------
Confidence 99999999999888754 4888888988888887766665443 333222 22 55666532 21111
Q ss_pred cccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 145 SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
-++.| .++++++.+..+.+.++ +.++.+. ...|+++ |.+ ....+.|++.++.+ | .+++++++
T Consensus 463 Evi~g~~Ts~e~~~~~~~~~~~lg------K~pV~vk-d~pGFi~----NRi---~~~~~~ea~~l~~e-G-~~~~~id~ 526 (742)
T 3zwc_A 463 EVIPSRYSSPTTIATVMSLSKKIG------KIGVVVG-NCYGFVG----NRM---LAPYYNQGFFLLEE-G-SKPEDVDG 526 (742)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHTT------CEEEECC-CSTTTTH----HHH---HHHHHHHHHHHHHT-T-CCHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhC------CCCcccC-CCCCccH----HHH---hhHHHHHHHHHHHc-C-CCHHHHHH
Confidence 23443 58899999999999999 7788775 4667766 444 45566999999886 5 89999999
Q ss_pred HHHHh
Q 010652 223 IFDEW 227 (505)
Q Consensus 223 ~~~~~ 227 (505)
++..+
T Consensus 527 a~~~~ 531 (742)
T 3zwc_A 527 VLEEF 531 (742)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 88654
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-14 Score=145.21 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=103.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++|+|||+|.||..++.+|++. |+ +|.+|||++++.+++.+.... ++..+.+++++++. +|+|++|+|..
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~----~~~~~~~~~e~v~~---aDiVi~atp~~ 207 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG----EVRVCSSVQEAVAG---ADVIITVTLAT 207 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS----CCEECSSHHHHHTT---CSEEEECCCCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC----CeEEeCCHHHHHhc---CCEEEEEeCCC
Confidence 46899999999999999999886 76 899999999999988765210 15677899999887 99999999974
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc----CCCCCCh----hhhhcCC-cccCCCCHH
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG----MGVSGGE----EGARHGP-SLMPGGSFE 153 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~----~pvsgg~----~~a~~G~-~i~~gg~~e 153 (505)
. .++.. +.+++|++|++.|+..|.. .++.+.+.++|..|+| +|+.+|+ .++..|+ ..|++|+.+
T Consensus 208 ~---~v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~ 280 (312)
T 2i99_A 208 E---PILFG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKP 280 (312)
T ss_dssp S---CCBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSC
T ss_pred C---cccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCC
Confidence 3 33332 5788999999998888864 6667777788999999 6773343 3444555 667777643
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-12 Score=125.24 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=101.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++++.+. .....+++++++. +|+|++++|..+.+
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------~~~~~~l~ell~~---aDiV~l~~P~t~~t 187 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------------DVISESPADLFRQ---SDFVLIAIPLTDKT 187 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------------SEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------------ccccCChHHHhhc---cCeEEEEeeccccc
Confidence 68999999999999999999999999999999764221 2456799999988 99999999987777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ .+.++.+++|.++||+|++.+.+...+.+.+++.++...+..|+..++
T Consensus 188 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 240 (290)
T 3gvx_A 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEP 240 (290)
T ss_dssp TTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTT
T ss_pred hhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCc
Confidence 7777 678889999999999999999999999999999888877777777665
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=123.68 Aligned_cols=112 Identities=12% Similarity=0.158 Sum_probs=93.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||+.+|..|+..|++|.+|||++++.+.+.+. ++... +++++++. +|+|++++|....
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~~~-~l~e~l~~---aDvVi~~vp~~~~ 223 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF-------QAEFV-STPELAAQ---SDFIVVACSLTPA 223 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTT-------TCEEC-CHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhc-------CceeC-CHHHHHhh---CCEEEEeCCCChH
Confidence 3689999999999999999999999999999988765554332 23444 88888887 9999999999877
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
++.++ +++.+.+++|.++|++|++.+.++..+.+.+.+.++..
T Consensus 224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~g 267 (330)
T 2gcg_A 224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAA 267 (330)
T ss_dssp TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSE
T ss_pred HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccE
Confidence 77777 56778899999999999999999999999888765543
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.2e-11 Score=122.36 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=77.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHh-CCCcEEEEe---CChhHHHHHHHhhc------ccCC------CCee-eeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAE-KGFPISVYN---RTTSKVDETLDRAH------REGQ------LPLT-GHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~-~G~~V~v~d---r~~~~~~~~~~~~~------~~g~------~~i~-~~~s~~e~v~ 68 (505)
+|||+|||+|.||..+|..|++ +|++|++|| |++++++.+.+... ..+. .++. .++++++++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 4699999999999999999998 599999999 88888877543321 0000 0122 5678888777
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCC
Q 010652 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
. +|+||++||+. ..+++++++.+.+.++++|++..
T Consensus 82 ~---aD~Vilav~~~-~~~~v~~~l~~~l~~~~ivv~~~ 116 (404)
T 3c7a_A 82 G---ADVVILTVPAF-AHEGYFQAMAPYVQDSALIVGLP 116 (404)
T ss_dssp T---CSEEEECSCGG-GHHHHHHHHTTTCCTTCEEEETT
T ss_pred C---CCEEEEeCchH-HHHHHHHHHHhhCCCCcEEEEcC
Confidence 6 99999999995 68999999999999999999853
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-11 Score=122.00 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=97.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||..+|..|+..|++|.+|||++++ +...+.+ +.. .+++++++. +|+|++++|....
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~~~l~~---aDvVil~vp~~~~ 217 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELN-------AEF-KPLEDLLRE---SDFVVLAVPLTRE 217 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHC-------CEE-CCHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcC-------ccc-CCHHHHHhh---CCEEEECCCCChH
Confidence 368999999999999999999999999999999876 4333322 333 588888887 9999999999876
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
++.++ +++.+.+++|.++|++|++.+.++..+.+.+.+..+...+..+++.+
T Consensus 218 t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~E 270 (334)
T 2dbq_A 218 TYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270 (334)
T ss_dssp TTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCC
Confidence 77777 57778899999999999999999989999888866655444455443
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-11 Score=122.57 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=98.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||+.+|+.+. ..|++|.+|||++++.+...+.+ +....+++++++. +|+|++++|....
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvVil~vp~~~~ 233 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALG-------AERVDSLEELARR---SDCVSVSVPYMKL 233 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCSGG
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcC-------cEEeCCHHHHhcc---CCEEEEeCCCChH
Confidence 57999999999999999999 99999999999987655443322 3445689998887 9999999999877
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
++.++ .++.+.+++|.++|++|++.+.+...+.+.+.+..+...+..+++.+
T Consensus 234 t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E 286 (348)
T 2w2k_A 234 THHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE 286 (348)
T ss_dssp GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTT
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCC
Confidence 77777 46778899999999999999999999999888765554555566544
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=123.51 Aligned_cols=121 Identities=10% Similarity=0.066 Sum_probs=100.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++...+.+.+.+ +....+++++++. +|+|++++|..+.+
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 234 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETG-------AKFVEDLNEMLPK---CDVIVINMPLTEKT 234 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHC-------CEECSCHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCC-------CeEcCCHHHHHhc---CCEEEECCCCCHHH
Confidence 6899999999999999999999999999999875555444432 4556799999988 99999999987777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ .+.++.+++|.++||++.+...+...+.+.+.+..+......|...+
T Consensus 235 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 286 (351)
T 3jtm_A 235 RGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQ 286 (351)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred HHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCC
Confidence 7777 67788899999999999999999999999999877664444455443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-12 Score=124.46 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=113.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|||||||+|.||..++.+|.+.|++| .+||+++ +.+ . .+.+++++++ .++|+|++|+|+. .
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~------------~--~~~~~~~l~~--~~~DvVv~~~~~~-~ 62 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHE------------K--MVRGIDEFLQ--REMDVAVEAASQQ-A 62 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCT------------T--EESSHHHHTT--SCCSEEEECSCHH-H
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chh------------h--hcCCHHHHhc--CCCCEEEECCCHH-H
Confidence 48999999999999999999999997 6999985 211 1 3678999884 2399999999985 3
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhH---HHHHHHHHHcCCe-EEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNT---ERRIHEASQKGLL-YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t---~~~~~~l~~~gi~-~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~l 161 (505)
..+++ ...+..|..|++.++..+... +++.+..+++|.. +++.|++|+...+..+.. |++...+...++.
T Consensus 63 ~~~~~---~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~ 136 (236)
T 2dc1_A 63 VKDYA---EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE---LIEEIVLTTRKNW 136 (236)
T ss_dssp HHHHH---HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG---GEEEEEEEEEEEG
T ss_pred HHHHH---HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc---cccEEEEEEEcCh
Confidence 33333 344567899999988765443 5666777777877 689999999877665543 4444444444454
Q ss_pred HHHhhcccCCCCcEEEeCCCC-chhhhhhHhHHHH
Q 010652 162 LQKVAAQVDDGPCVTYIGEGG-SGNFVKMVHNGIE 195 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G-~g~~vK~v~N~i~ 195 (505)
++..+ ++++|.|+.+ .+..+|...|.+.
T Consensus 137 ~~~~~------~~~~~~G~~~~~~~~~~~~~n~~~ 165 (236)
T 2dc1_A 137 RQFGR------KGVIFEGSASEAAQKFPKNLNVAA 165 (236)
T ss_dssp GGTTS------CEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred HHcCc------ceEEEeccHHHHHHHCCchHHHHH
Confidence 55445 6788888753 3346777777654
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-11 Score=121.48 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=98.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++.. +...+. ++....+++++++. +|+|++++|....+
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDiV~l~~Plt~~t 229 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARAD-------GFAVAESKDALFEQ---SDVLSVHLRLNDET 229 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHT-------TCEECSSHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhc-------CceEeCCHHHHHhh---CCEEEEeccCcHHH
Confidence 58999999999999999999999999999998643 333333 24566799999988 99999999988777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
+.++ .+.++.+++|.++||+|.+...+...+.+.+++..+......|...
T Consensus 230 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~ 280 (352)
T 3gg9_A 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFET 280 (352)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSS
T ss_pred HHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCC
Confidence 7766 5778889999999999999999999999999988776544444443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.1e-11 Score=119.67 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=94.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||+.+|+.|...|++|.+|||++++.+ + .....+++++++. +|+|++++|....
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g-------~~~~~~l~ell~~---aDvVil~vP~~~~ 228 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----N-------YTYYGSVVELASN---SDILVVACPLTPE 228 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----C-------SEEESCHHHHHHT---CSEEEECSCCCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----C-------ceecCCHHHHHhc---CCEEEEecCCChH
Confidence 36899999999999999999999999999999976421 1 3456789998887 9999999999877
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
++.++ ++..+.+++|.++|++|++.+.++..+.+.+.+..+.....-+..
T Consensus 229 t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~ 279 (333)
T 3ba1_A 229 TTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE 279 (333)
T ss_dssp GTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence 77777 467778899999999999999999999999988765543333433
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=117.53 Aligned_cols=118 Identities=11% Similarity=0.136 Sum_probs=95.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||+.+|+.+...|++|.+|||++++ +...+.+ +.. .+++++++. +|+|++++|....
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~e~l~~---aDiVil~vp~~~~ 213 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELK-------ARY-MDIDELLEK---SDIVILALPLTRD 213 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHT-------EEE-CCHHHHHHH---CSEEEECCCCCTT
T ss_pred cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcC-------cee-cCHHHHHhh---CCEEEEcCCCChH
Confidence 368999999999999999999999999999999876 3333322 333 488888887 9999999999877
Q ss_pred HHHHHH-HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 86 VDQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 86 v~~vl~-~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
++.+++ ++.+.+++| ++|++|++.+.++.++.+.+.+..+...+..+++.
T Consensus 214 t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 264 (333)
T 2d0i_A 214 TYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEK 264 (333)
T ss_dssp TTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSS
T ss_pred HHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCC
Confidence 777774 567788899 99999999999998888888876555555555553
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-11 Score=124.01 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=99.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||+++..+.+. ......+++++++. +|+|++++|....+
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~t 205 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH---------ETVAFTATADALAT---ANFIVNALPLTPTT 205 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCS---------EEEEGGGCHHHHHH---CSEEEECCCCCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHh---------hccccCCHHHHHhh---CCEEEEcCCCchHH
Confidence 5799999999999999999999999999999976432211 12335688999988 99999999988777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ .+.+..+++|.++||+|.+...+...+.+.+.+..+......|+..++
T Consensus 206 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP 258 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP 258 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSS
T ss_pred HHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCC
Confidence 7777 677888999999999999999999999999988877665556665543
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.4e-11 Score=120.66 Aligned_cols=116 Identities=21% Similarity=0.336 Sum_probs=77.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++++ .. ......+++++++. +|+|++++|....+
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~-------~~~~~~sl~ell~~---aDvVil~vP~t~~t 236 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GV-------DWIAHQSPVDLARD---SDVLAVCVAASAAT 236 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TS-------CCEECSSHHHHHHT---CSEEEECC------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----cc-------CceecCCHHHHHhc---CCEEEEeCCCCHHH
Confidence 68999999999999999999999999999999764 11 23456799999988 99999999988888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ ++.++.+++|.++||++.+...+...+.+.+++..+......|...+
T Consensus 237 ~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~E 288 (340)
T 4dgs_A 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNE 288 (340)
T ss_dssp ----CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSS
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCC
Confidence 8888 67888899999999999999999999999998876665555555544
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=117.80 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=99.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++...+... + .....+++++++. +|+|++++|..+.+
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g-------~~~~~~l~ell~~---sDvV~l~~Plt~~T 241 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--G-------AIYHDTLDSLLGA---SDIFLIAAPGRPEL 241 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--T-------CEECSSHHHHHHT---CSEEEECSCCCGGG
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--C-------CeEeCCHHHHHhh---CCEEEEecCCCHHH
Confidence 5899999999999999999999999999999875433221 2 3455799999987 99999999988777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ .+.++.+++|.++||++.+...+...+.+.+++..+......|...++
T Consensus 242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP 294 (345)
T 4g2n_A 242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP 294 (345)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence 7777 677888999999999999999999999999988766655555665554
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=120.79 Aligned_cols=120 Identities=12% Similarity=0.148 Sum_probs=99.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++.+.+.....+ +. ..+++++++. +|+|++++|....+
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~P~t~~t 214 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLG-------LR-QVACSELFAS---SDFILLALPLNADT 214 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHT-------EE-ECCHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcC-------ce-eCCHHHHHhh---CCEEEEcCCCCHHH
Confidence 6899999999999999999999999999999975444433332 33 3489999988 99999999987777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ ++.++.+++|.++||++++...+...+.+.+.+.++......|+..+
T Consensus 215 ~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 266 (330)
T 4e5n_A 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEME 266 (330)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence 7777 57888899999999999999999999999999887765555555544
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=9.7e-11 Score=118.15 Aligned_cols=119 Identities=15% Similarity=0.210 Sum_probs=95.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr-~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||+.+|+++...|++|.+||| ++++. ...+.+ +....+++++++. +|+|++++|...+
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g-------~~~~~~l~ell~~---aDvVil~~p~~~~ 215 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQ-------ATFHDSLDSLLSV---SQFFSLNAPSTPE 215 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcC-------cEEcCCHHHHHhh---CCEEEEeccCchH
Confidence 5799999999999999999999999999999 87663 333222 3455589999987 9999999998777
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
++.++ +..++.+++|.++||++++.+.+...+.+.+++..+.-.+.-|+..
T Consensus 216 t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~ 267 (320)
T 1gdh_A 216 TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAG 267 (320)
T ss_dssp TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTT
T ss_pred HHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 77777 5677889999999999999888888889888876554333334433
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.1e-11 Score=120.30 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=96.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||+.+|++|...|++|.+||+++++.. .... ++..+.+++++++. +|+|++++|....
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------g~~~~~~l~ell~~---aDvV~l~~P~t~~ 236 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEH 236 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHH-------TCEECSSHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-Hhhc-------CCeecCCHHHHHhc---CCEEEEcCCCCHH
Confidence 36899999999999999999999999999999876421 1222 23455689999988 9999999999877
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
++.++ ++.++.+++|.++|+++++.+.+...+.+.+.+.++.....-|..
T Consensus 237 t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~ 287 (347)
T 1mx3_A 237 NHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHE 287 (347)
T ss_dssp CTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred HHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecc
Confidence 77777 677788999999999999999999999999998776543333443
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-11 Score=123.48 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=96.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++...+.+ . ......+++++++. +|+|++++|....+
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-----~----~~~~~~~l~ell~~---aDvV~l~lPlt~~T 208 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF-----D----QVYQLPALNKMLAQ---ADVIVSVLPATRET 208 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC-----S----EEECGGGHHHHHHT---CSEEEECCCCCSSS
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh-----h----cccccCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 689999999999999999999999999999987432211 0 12335689999887 99999999987777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ .+.+..+++|.++||+|.+...+...+.+.+.+..+......|...++
T Consensus 209 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP 261 (324)
T 3hg7_A 209 HHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEP 261 (324)
T ss_dssp TTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSS
T ss_pred HHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCC
Confidence 7776 466778999999999999999999999999988777554445555443
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.8e-11 Score=117.77 Aligned_cols=119 Identities=12% Similarity=0.157 Sum_probs=95.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++++. ...+.+ +.. .+++++++. +|+|++++|....+
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g-------~~~-~~l~ell~~---aDvVvl~~P~~~~t 210 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKIN-------AKA-VSLEELLKN---SDVISLHVTVSKDA 210 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCCTTS
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcC-------cee-cCHHHHHhh---CCEEEEeccCChHH
Confidence 689999999999999999999999999999998764 233322 333 489999887 99999999987767
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ ++.++.+++|.++||++++.+.+...+.+.+++.++.-...-+...+
T Consensus 211 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~e 262 (313)
T 2ekl_A 211 KPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNE 262 (313)
T ss_dssp CCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSS
T ss_pred HHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCC
Confidence 6666 56778899999999999999999999999988766543333344443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=116.16 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=92.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++++ +...+.+ +.. .+++++++. +|+|++++|....+
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~ell~~---aDvV~l~~p~~~~t 210 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVN-------GKF-VDLETLLKE---SDVVTIHVPLVEST 210 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCSTTT
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcC-------ccc-cCHHHHHhh---CCEEEEecCCChHH
Confidence 58999999999999999999999999999999876 3333332 333 489999887 99999999988777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+.++ ++.++.+++|.++||+|++.+.+...+.+.+++..+.-
T Consensus 211 ~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~g 253 (307)
T 1wwk_A 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAG 253 (307)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSE
T ss_pred hhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcE
Confidence 7777 56778899999999999999989989999888865543
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-10 Score=115.56 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=95.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+||+++.. +...+.+ +. ..+++++++. +|+|++++|....+
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~Plt~~T 244 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEENG-------VE-PASLEDVLTK---SDFIFVVAAVTSEN 244 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHHTT-------CE-ECCHHHHHHS---CSEEEECSCSSCC-
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhhcC-------ee-eCCHHHHHhc---CCEEEEcCcCCHHH
Confidence 57999999999999999999999999999998643 3333332 23 4589999987 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ .+.+..+++|.++||+|.+...+...+.+.+++..+. ....|...+
T Consensus 245 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~E 295 (365)
T 4hy3_A 245 KRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEE 295 (365)
T ss_dssp --CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSS
T ss_pred HhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCC
Confidence 8888 6788889999999999999999999999999887665 444555443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-11 Score=121.92 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=97.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
-++|||||+|.||+.+|++|...|++|.+|||+++..+.+ . ......+++++++. +|+|++++|....
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-----~----~~~~~~~l~ell~~---aDiV~l~~Plt~~ 206 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV-----E----SYVGREELRAFLNQ---TRVLINLLPNTAQ 206 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC-----E----EEESHHHHHHHHHT---CSEEEECCCCCGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh-----h----hhcccCCHHHHHhh---CCEEEEecCCchh
Confidence 3689999999999999999999999999999997642211 0 01123578888887 9999999998888
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
++.++ .+.++.+++|.++||+|.+...+...+.+.+.+..+......|...+
T Consensus 207 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 259 (315)
T 3pp8_A 207 TVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQE 259 (315)
T ss_dssp GTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred hhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCC
Confidence 88887 67888899999999999999999999999998876665444555544
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=116.70 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=96.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||+++. . .+. ... ..+++++++. +|+|++++|....+
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~-~~~-------~~~-~~~l~ell~~---aDvV~l~~Plt~~t 214 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP--E-FEP-------FLT-YTDFDTVLKE---ADIVSLHTPLFPST 214 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG--G-GTT-------TCE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh--h-hhc-------ccc-ccCHHHHHhc---CCEEEEcCCCCHHH
Confidence 57999999999999999999999999999999764 1 111 122 3499999988 99999999987777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ .+.+..+++|.++||+|.+...+...+.+.+.+..+.....-|+..++
T Consensus 215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 267 (343)
T 2yq5_A 215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES 267 (343)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence 7776 567788999999999999999999999999988766554445555544
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=116.96 Aligned_cols=119 Identities=9% Similarity=0.088 Sum_probs=95.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++++ +.....+ +. ..+++++++. +|+|++++|....+
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~P~t~~t 233 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFG-------VQ-QLPLEEIWPL---CDFITVHTPLLPST 233 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTT-------CE-ECCHHHHGGG---CSEEEECCCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcC-------ce-eCCHHHHHhc---CCEEEEecCCCHHH
Confidence 57999999999999999999999999999998776 2333322 33 3588998887 99999999998777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ ++.++.+++|.++||+|++...+...+.+.+.+..+.-...-|...+
T Consensus 234 ~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~E 285 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE 285 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred HHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCC
Confidence 7777 57888899999999999999999999999888865543222344443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=120.29 Aligned_cols=120 Identities=13% Similarity=0.044 Sum_probs=97.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++.+.+...+.+ +....+++++++. +|+|++++|...++
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 261 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELN-------LTWHATREDMYPV---CDVVTLNCPLHPET 261 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcC-------ceecCCHHHHHhc---CCEEEEecCCchHH
Confidence 6899999999999999999999999999999875544333332 3445689999887 99999999987777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
+.++ ++.++.+++|.++|+++++...+...+.+.+.+..+.....-|+..
T Consensus 262 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~ 312 (393)
T 2nac_A 262 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 312 (393)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSS
T ss_pred HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCC
Confidence 7777 5778889999999999999999999999998876554433334443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=118.82 Aligned_cols=120 Identities=12% Similarity=0.020 Sum_probs=98.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||..+|++|...|++ |.+|||++.+.+...+. ++....+++++++. +|+|++++|....
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~~P~t~~ 234 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKV-------GARRVENIEELVAQ---ADIVTVNAPLHAG 234 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHT-------TEEECSSHHHHHHT---CSEEEECCCCSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhc-------CcEecCCHHHHHhc---CCEEEECCCCChH
Confidence 5899999999999999999999998 99999988655544333 24555689999887 9999999999877
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
++.++ ++.++.+++|.++|+++++...+...+.+.+.+.++.....-|...
T Consensus 235 t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~ 286 (364)
T 2j6i_A 235 TKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 286 (364)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCC
Confidence 77777 5677889999999999999999999999999887665443344433
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-10 Score=121.91 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=109.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+++|++|...|++|.+||+++.. +...+.+ +... +++++++. +|+|++++|..+.+
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g-------~~~~-~l~e~~~~---aDvV~l~~P~~~~t 210 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLG-------IELL-SLDDLLAR---ADFISVHLPKTPET 210 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHT-------CEEC-CHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcC-------cEEc-CHHHHHhc---CCEEEECCCCchHH
Confidence 68999999999999999999999999999998753 3333332 3333 89999888 99999999998777
Q ss_pred HHHHHH-HhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhh----hhcCC-ccc---CC-CCHHHHH
Q 010652 87 DQTIAA-LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEG----ARHGP-SLM---PG-GSFEAYN 156 (505)
Q Consensus 87 ~~vl~~-l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~----a~~G~-~i~---~g-g~~e~~~ 156 (505)
+.++++ +.+.+++|.+|||++++.+.+..++.+.+.+..+......+.++++. ....+ .++ .| .+.++.+
T Consensus 211 ~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~ 290 (529)
T 1ygy_A 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQD 290 (529)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHH
T ss_pred HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHH
Confidence 888754 88889999999999999999998888888876544333334444332 22334 222 24 4677766
Q ss_pred H-----HHHHHHHhhc
Q 010652 157 N-----IRDILQKVAA 167 (505)
Q Consensus 157 ~-----v~~ll~~iga 167 (505)
+ ++.+.+.+++
T Consensus 291 ~~~~~~~~~l~~~l~~ 306 (529)
T 1ygy_A 291 RAGTDVAESVRLALAG 306 (529)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5 5566666664
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=115.67 Aligned_cols=113 Identities=11% Similarity=0.147 Sum_probs=93.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||+.+|++|...|++|.+|||+++ +. + .....+++++++. +|+|++++|....
T Consensus 124 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~-------~~~~~~l~ell~~---aDvV~l~~P~~~~ 187 (303)
T 1qp8_A 124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----P-------WRFTNSLEEALRE---ARAAVCALPLNKH 187 (303)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----S-------SCCBSCSHHHHTT---CSEEEECCCCSTT
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----C-------cccCCCHHHHHhh---CCEEEEeCcCchH
Confidence 36899999999999999999999999999999876 11 1 1235688898887 9999999999877
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
++.++ ++.++.+++|.++||+|++.+.+...+.+.+.+..+...+..|+
T Consensus 188 t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~ 237 (303)
T 1qp8_A 188 TRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237 (303)
T ss_dssp TTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence 77777 47888899999999999999999999999998876554433444
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-10 Score=118.63 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=92.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+||+++... .. ......+++++++. +|+|++++|..+.+
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~-----~~------~~~~~~sl~ell~~---aDvV~lhvPlt~~T 222 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ-----YG------NVKPAASLDELLKT---SDVVSLHVPSSKST 222 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC-----BT------TBEECSSHHHHHHH---CSEEEECCCC----
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc-----cc------CcEecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999985421 00 23556799999998 99999999998777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ .+.+..+++|.++||+|.+...+...+.+.+++..+......|+..+
T Consensus 223 ~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~E 274 (416)
T 3k5p_A 223 SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVE 274 (416)
T ss_dssp -CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSC
T ss_pred hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCC
Confidence 7777 56778899999999999999999999999998876654444555444
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-10 Score=117.28 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=97.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|||||+|.||+.+|++|...|++|.+||++.+... . .....+++++++. +|+|++++|....
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~-------~~~~~sl~ell~~---aDiV~l~~Plt~~g 184 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----D-------EGDFRTLDELVQE---ADVLTFHTPLYKDG 184 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----C-------CSCBCCHHHHHHH---CSEEEECCCCCCSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----c-------CcccCCHHHHHhh---CCEEEEcCcCCccc
Confidence 5899999999999999999999999999998543211 1 1235789999988 9999999998766
Q ss_pred ---HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
++.++ .+.+..+++|.++||+|.+...+...+.+.+++.++......|...++
T Consensus 185 ~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP 241 (381)
T 3oet_A 185 PYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP 241 (381)
T ss_dssp TTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred cccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCC
Confidence 66666 567788999999999999999999999999998877766666766554
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-10 Score=113.17 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=96.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++++. + +.. +....+++++++. +|+|++++|....+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~~~~~l~ell~~---aDvV~l~~p~~~~t 213 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 213 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-------CeecCCHHHHHhh---CCEEEEcCCCcHHH
Confidence 579999999999999999999999999999998764 2 221 1234589999887 99999999998777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ +...+.+++|.++|++|++...+...+.+.+++..+.....-|...+
T Consensus 214 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~E 265 (333)
T 1j4a_A 214 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 265 (333)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred HHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCC
Confidence 7777 56778899999999999999999999999999877665444455444
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-10 Score=115.24 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=100.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC------CCcEEEEeCChhH-HHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK------GFPISVYNRTTSK-VDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~------G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~----~~s~~e~v~~l~~adv 75 (505)
++|||||+|.||.++|++|.+. |++|++++++.++ .+...+.+ +.. ..+++|+++. +|+
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G-------~~v~d~ta~s~aEAa~~---ADV 124 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAG-------FTEESGTLGDIWETVSG---SDL 124 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTT-------CCTTTTCEEEHHHHHHH---CSE
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCC-------CEEecCCCCCHHHHHhc---CCE
Confidence 6899999999999999999999 9999987776443 34444433 222 3588999988 999
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHH--HHHHcCCeEEc-CCCCCChh-------h---hhc
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH--EASQKGLLYLG-MGVSGGEE-------G---ARH 142 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~--~l~~~gi~~v~-~pvsgg~~-------~---a~~ 142 (505)
||+++|+. ...++++++.+.+++|.+|+.+.... ...+.+ .....++.++- +|-..|.. + .-.
T Consensus 125 VILaVP~~-~~~eVl~eI~p~LK~GaILs~AaGf~---I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~ 200 (525)
T 3fr7_A 125 VLLLISDA-AQADNYEKIFSHMKPNSILGLSHGFL---LGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGA 200 (525)
T ss_dssp EEECSCHH-HHHHHHHHHHHHSCTTCEEEESSSHH---HHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTC
T ss_pred EEECCChH-HHHHHHHHHHHhcCCCCeEEEeCCCC---HHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccC
Confidence 99999995 45678889999999999987765532 111221 11223555553 56544433 1 013
Q ss_pred CC-ccc-CCC--CHHHHHHHHHHHHHhh
Q 010652 143 GP-SLM-PGG--SFEAYNNIRDILQKVA 166 (505)
Q Consensus 143 G~-~i~-~gg--~~e~~~~v~~ll~~ig 166 (505)
|. +++ +.. +.++.+.+..++.++|
T Consensus 201 Gv~~liAv~qd~tgea~e~alala~aiG 228 (525)
T 3fr7_A 201 GINSSFAVHQDVDGRATDVALGWSVALG 228 (525)
T ss_dssp SCCEEEEEEECSSSCHHHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCHHHHHHHHHHHHHCC
Confidence 44 233 333 3478899999999999
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-10 Score=116.76 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=91.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++... .+ .+....+++++++. +|+|++++|..+.+
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---aDvV~l~~P~t~~t 211 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-----LG------NATQVQHLSDLLNM---SDVVSLHVPENPST 211 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC-----CT------TCEECSCHHHHHHH---CSEEEECCCSSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc-----cC------CceecCCHHHHHhc---CCEEEEccCCChHH
Confidence 589999999999999999999999999999986431 11 24556799999988 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ ++.+..+++|.++||+|++...+...+.+.+++..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 253 (404)
T 1sc6_A 212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 253 (404)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence 8777 5677889999999999999999999999999876554
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-10 Score=112.90 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=90.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||..+|+++...|++|.+|||++++.+ . ...+++++++. +|+|++++|....+
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~--------~~~~l~ell~~---aDvV~l~~p~~~~t 207 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y--------PFLSLEELLKE---ADVVSLHTPLTPET 207 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S--------CBCCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c--------ccCCHHHHHhh---CCEEEEeCCCChHH
Confidence 5799999999999999999999999999999976532 1 13588899887 99999999998777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
+.++ ++.++.+++|.++||+|++.+.+...+.+.++ ..+.....-+++
T Consensus 208 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~ 256 (311)
T 2cuk_A 208 HRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTD 256 (311)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCS
T ss_pred HhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCC
Confidence 7777 36778899999999999999989888988888 655433233443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.3e-10 Score=113.77 Aligned_cols=116 Identities=10% Similarity=0.148 Sum_probs=94.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|||||+|.||+.+|++|...|++|.+||++++.. ..+ . ...+++++++. +|+|++++|....
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g-------~-~~~~l~ell~~---aDvV~l~~Plt~~g 181 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPD-------G-EFVSLERLLAE---ADVISLHTPLNRDG 181 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STT-------S-CCCCHHHHHHH---CSEEEECCCCCSSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccC-------c-ccCCHHHHHHh---CCEEEEeccCcccc
Confidence 689999999999999999999999999999876532 111 1 24689999987 9999999998776
Q ss_pred ---HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
++.++ ++.++.+++|.++||+|++...+...+.+.+++.++.....-|...+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~E 237 (380)
T 2o4c_A 182 EHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGE 237 (380)
T ss_dssp SSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTT
T ss_pred ccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccC
Confidence 66666 56788899999999999999999999999998876654444454443
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=9.9e-10 Score=111.33 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=97.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++++. + ... +. ..+++++++. +|+|++++|....+
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~-~~~l~ell~~---aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD-------FD-YVSLEDLFKQ---SDVIDLHVPGIEQN 211 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT-------CE-ECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc-------cc-cCCHHHHHhc---CCEEEEcCCCchhH
Confidence 579999999999999999999999999999987642 1 111 22 3489999987 99999999998877
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ ++.++.+++|.++|++|++...+...+.+.+++.++.-...-|...++
T Consensus 212 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 264 (333)
T 1dxy_A 212 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264 (333)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence 7777 567788999999999999999999999999988776655555665554
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-10 Score=111.53 Aligned_cols=118 Identities=16% Similarity=0.150 Sum_probs=96.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++++. + +.. +. ..+++++++. +|+|++++|....+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~-~~~l~ell~~---aDvV~~~~p~t~~t 212 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDY-------CT-QVSLDEVLEK---SDIITIHAPYIKEN 212 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTT-------CE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhc-------cc-cCCHHHHHhh---CCEEEEecCCchHH
Confidence 579999999999999999999999999999987643 1 111 22 3489999887 99999999988777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ ++.++.+++|.++||+|++...+...+.+.+.+.++.....-|...++
T Consensus 213 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 265 (331)
T 1xdw_A 213 GAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEA 265 (331)
T ss_dssp CCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCC
Confidence 7777 567788999999999999999999999999998877655555655543
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=96.00 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=84.0
Q ss_pred CCcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGl----G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ . +...+.|++|+.+. +|++++++|
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~-------G~~~~~s~~el~~~---vDlvii~vp 78 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----E-------GLKCYRSVRELPKD---VDVIVFVVP 78 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----T-------TEECBSSGGGSCTT---CCEEEECSC
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----C-------CeeecCCHHHhCCC---CCEEEEEeC
Confidence 357999999 9999999999999999866666653221 1 35778899998876 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+ +.+.++++++.. ...+.+|++.++. .+++.+.+++.|+.+++.
T Consensus 79 ~-~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igp 122 (138)
T 1y81_A 79 P-KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFG 122 (138)
T ss_dssp H-HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECS
T ss_pred H-HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcC
Confidence 6 688889988776 4567789988774 467777778889999974
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-09 Score=103.86 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=83.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch--
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP-- 85 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~-- 85 (505)
+|+|||+|.||.+++..|.+.|++|++|||++++.+++.+... .. ..+++++ +. +|+|++++|.+..
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~------~~-~~~~~~~-~~---~Divi~~tp~~~~~~ 186 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG------LR-AVPLEKA-RE---ARLLVNATRVGLEDP 186 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT------CE-ECCGGGG-GG---CSEEEECSSTTTTCT
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cc-hhhHhhc-cC---CCEEEEccCCCCCCC
Confidence 8999999999999999999999999999999998888765421 23 4577777 66 9999999998731
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+..++. .+.+++|.+|+|.+.. |..+ ++.+.++++|+.+++
T Consensus 187 ~~~~l~--~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~ 227 (263)
T 2d5c_A 187 SASPLP--AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQT 227 (263)
T ss_dssp TCCSSC--GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CCCCCC--HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEEC
Confidence 112221 3567889999999887 4455 466667778887774
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.5e-09 Score=103.31 Aligned_cols=138 Identities=16% Similarity=0.124 Sum_probs=96.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|+|||+|.||..+|+.+...|.+|++|||++++.+.+.+.+. ......+++++++. +|+|++++|.+.
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~-----~~~~~~~l~~~l~~---aDvVi~~~p~~~- 227 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGL-----VPFHTDELKEHVKD---IDICINTIPSMI- 227 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----EEEEGGGHHHHSTT---CSEEEECCSSCC-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-----eEEchhhHHHHhhC---CCEEEECCChhh-
Confidence 368999999999999999999999999999999987766554321 11113567776665 999999999853
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC-CCCChhhhhcCCcccCCCCHHHHHHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG-VSGGEEGARHGPSLMPGGSFEAYNNIRDILQK 164 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p-vsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ 164 (505)
+. +.....+++|.++||++....... . +.....|+.++++| +.|+...+..+ .-.++.+.+++..
T Consensus 228 i~---~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg~~g~v~~a~a~--------~l~~~~~~~~l~~ 293 (300)
T 2rir_A 228 LN---QTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAPGLPGIVAPKTAG--------QILANVLSKLLAE 293 (300)
T ss_dssp BC---HHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCHHHHHCHHHHH--------HHHHHHHHHHHHH
T ss_pred hC---HHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECCCCCCcHHHHHHH--------HHHHHHHHHHHHH
Confidence 22 234567889999999998643332 2 34456689999887 55544333222 1234566777776
Q ss_pred hh
Q 010652 165 VA 166 (505)
Q Consensus 165 ig 166 (505)
++
T Consensus 294 ~~ 295 (300)
T 2rir_A 294 IQ 295 (300)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-08 Score=85.43 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=79.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeee-eCCHHHHHh-hcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTG-HYTPRDFVL-SIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-~~~~g~~~i~~-~~s~~e~v~-~l~~advIil~vp~ 82 (505)
.|+|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+. +.. -+.. ..+.+.+.+ .++++|+|++++|+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 79 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL----VINGDCTKIKTLEDAGIEDADMYIAVTGK 79 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE----EEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE----EEEcCCCCHHHHHHcCcccCCEEEEeeCC
Confidence 4689999999999999999999999999999999988877643 210 0111 123333322 24569999999988
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
. .....+..+.+.+.++.+|+..++.. . .+.+.+.|+.++-.|
T Consensus 80 ~-~~~~~~~~~~~~~~~~~ii~~~~~~~--~----~~~l~~~g~~~v~~p 122 (140)
T 1lss_A 80 E-EVNLMSSLLAKSYGINKTIARISEIE--Y----KDVFERLGVDVVVSP 122 (140)
T ss_dssp H-HHHHHHHHHHHHTTCCCEEEECSSTT--H----HHHHHHTTCSEEECH
T ss_pred c-hHHHHHHHHHHHcCCCEEEEEecCHh--H----HHHHHHcCCCEEECH
Confidence 5 44445555666677778887655432 2 234556787776655
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-09 Score=105.15 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=82.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|+|||+|.||.+++..|.+.|++|++|||++++.+++.+.. ++...++++++++. +|+||.++|.+..
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---aDiVi~atp~~~~~ 200 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF------PLEVVNSPEEVIDK---VQVIVNTTSVGLKD 200 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS------CEEECSCGGGTGGG---CSEEEECSSTTSST
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc------CCeeehhHHhhhcC---CCEEEEeCCCCCCC
Confidence 6899999999999999999999999999999999888776432 34555577777766 9999999998742
Q ss_pred -HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 -VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 -v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+...++ .+.+.++.+|+|.++ . .+ ++.+..+++|+.+++
T Consensus 201 ~~~~~i~--~~~l~~g~~viDv~~-~--~t-~ll~~a~~~g~~~v~ 240 (275)
T 2hk9_A 201 EDPEIFN--YDLIKKDHVVVDIIY-K--ET-KLLKKAKEKGAKLLD 240 (275)
T ss_dssp TCCCSSC--GGGCCTTSEEEESSS-S--CC-HHHHHHHHTTCEEEC
T ss_pred CCCCCCC--HHHcCCCCEEEEcCC-C--hH-HHHHHHHHCcCEEEC
Confidence 111221 356788999999988 2 22 344455667877764
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.81 E-value=3e-09 Score=94.78 Aligned_cols=105 Identities=12% Similarity=0.044 Sum_probs=83.0
Q ss_pred CCcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGl----G~mG~~lA~~La~~G~~V~v~dr~~--~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
..+|+|||+ |.||..++.+|.+.||+|+.+|++. +.+ . ++..+.|++|+.+. +|+++++
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i---------~---G~~~~~sl~el~~~---~Dlvii~ 77 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL---------L---GQQGYATLADVPEK---VDMVDVF 77 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE---------T---TEECCSSTTTCSSC---CSEEECC
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc---------C---CeeccCCHHHcCCC---CCEEEEE
Confidence 357999999 8999999999999999977776654 221 1 35677888888765 8999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+|+ ..+.++++++.. ...+.+|++.++. .+++.+.+++.|+.+++.
T Consensus 78 vp~-~~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~igp 123 (145)
T 2duw_A 78 RNS-EAAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVMD 123 (145)
T ss_dssp SCS-THHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEECS
T ss_pred eCH-HHHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEcC
Confidence 997 688999988777 4556788887665 567777788889999963
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-08 Score=89.33 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=73.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|+|||+|.||..++..|.+.|++|++|||++++.+++.+.... .+....+++++++. +|+||.++|.+..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~----~~~~~~~~~~~~~~---~Divi~at~~~~~ 93 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY----EYVLINDIDSLIKN---NDVIITATSSKTP 93 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC----EEEECSCHHHHHHT---CSEEEECSCCSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCC----ceEeecCHHHHhcC---CCEEEEeCCCCCc
Confidence 3689999999999999999999999999999999998887665321 24466788888887 9999999998743
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+ +. ...+.+|.+++|.+..
T Consensus 94 ~---~~--~~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 94 I---VE--ERSLMPGKLFIDLGNP 112 (144)
T ss_dssp S---BC--GGGCCTTCEEEECCSS
T ss_pred E---ee--HHHcCCCCEEEEccCC
Confidence 2 11 1457789999998763
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=83.93 Aligned_cols=119 Identities=18% Similarity=0.289 Sum_probs=77.0
Q ss_pred cCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecC
Q 010652 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVK 81 (505)
Q Consensus 4 ~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp 81 (505)
.++.+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+.+... +....+..+..+ .+.++|.||+++|
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~----i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRA----VLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCE----EECCCCCHHHHHhcCcccCCEEEEECC
Confidence 3456899999999999999999999999999999999998887654321 122223333433 2346999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
++.....++.. +..+.++..+|-..+. + ...+.+.+.|+..+-.|
T Consensus 81 ~~~~n~~~~~~-a~~~~~~~~iiar~~~-~----~~~~~l~~~G~d~vi~p 125 (140)
T 3fwz_A 81 NGYEAGEIVAS-ARAKNPDIEIIARAHY-D----DEVAYITERGANQVVMG 125 (140)
T ss_dssp CHHHHHHHHHH-HHHHCSSSEEEEEESS-H----HHHHHHHHTTCSEEEEH
T ss_pred ChHHHHHHHHH-HHHHCCCCeEEEEECC-H----HHHHHHHHCCCCEEECc
Confidence 86544334433 3334344444433332 2 23345566787665433
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=82.96 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=75.5
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhh--cCCCcEEEE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS--IQRPRSVII 78 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~--l~~advIil 78 (505)
|...++++|.|+|+|.+|..++..|.++|++|+++|+++++++.+.+.+... +....+..+.++. ++++|.||+
T Consensus 1 m~~~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~----~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 1 MTENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDA----VIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp -----CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcE----EECCCCCHHHHHhCCcccCCEEEE
Confidence 4433456899999999999999999999999999999999988887654321 1222223333332 356999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
++|+. .....+-..+..+....+|+-..+.. . .+.+.+.|+..+-.
T Consensus 77 ~~~~~-~~n~~~~~~a~~~~~~~iia~~~~~~--~----~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 77 TGSDD-EFNLKILKALRSVSDVYAIVRVSSPK--K----KEEFEEAGANLVVL 122 (141)
T ss_dssp CCSCH-HHHHHHHHHHHHHCCCCEEEEESCGG--G----HHHHHHTTCSEEEE
T ss_pred ecCCH-HHHHHHHHHHHHhCCceEEEEEcChh--H----HHHHHHcCCCEEEC
Confidence 99964 33333334444444556666554432 2 23345567765443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.69 E-value=8.3e-08 Score=96.45 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=74.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHH----hhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLD----RAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~----~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||.++|..|+.+|+ +|++||+++++++.... ..... ...++..+.++ +.++. +|+||++
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~---aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISG---SDVVIIT 79 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEEe
Confidence 4689999999999999999999999 99999999987765321 10000 00145666676 44444 9999999
Q ss_pred cCCC---------------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHH
Q 010652 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRI 118 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~ 118 (505)
++.+ ...+++++.+.+.. ++.+++..||.....+..+.
T Consensus 80 vg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~~~~~~~ 132 (317)
T 2ewd_A 80 ASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDVMVSHFQ 132 (317)
T ss_dssp CCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHH
Confidence 9432 22466667777775 58889888885543333333
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=86.81 Aligned_cols=117 Identities=8% Similarity=0.027 Sum_probs=76.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhh--cCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLS--IQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~--l~~advIil~vp 81 (505)
.++|.|+|+|.||..+|..|.+. |++|+++|+++++++.+.+.+... +... .+.+.+.+. +.++|+||+++|
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~----~~gd~~~~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNV----ISGDATDPDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCE----EECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCE----EEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence 35899999999999999999999 999999999999988877654210 1111 233333232 567999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
+......++..+ ..+.+...|+..++ .+.. .+.+.+.|+.++..|
T Consensus 115 ~~~~~~~~~~~~-~~~~~~~~ii~~~~-~~~~----~~~l~~~G~~~vi~p 159 (183)
T 3c85_A 115 HHQGNQTALEQL-QRRNYKGQIAAIAE-YPDQ----LEGLLESGVDAAFNI 159 (183)
T ss_dssp SHHHHHHHHHHH-HHTTCCSEEEEEES-SHHH----HHHHHHHTCSEEEEH
T ss_pred ChHHHHHHHHHH-HHHCCCCEEEEEEC-CHHH----HHHHHHcCCCEEEch
Confidence 865554444433 33444444444333 2222 234556688877655
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-07 Score=94.73 Aligned_cols=113 Identities=14% Similarity=0.051 Sum_probs=81.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|+|||+|.||..+|+.+...|.+|++|||++++.+.+.+.+.. .....+++++++. +|+|++++|.+..
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDvVi~~~p~~~i 226 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGME-----PFHISKAAQELRD---VDVCINTIPALVV 226 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSE-----EEEGGGHHHHTTT---CSEEEECCSSCCB
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCe-----ecChhhHHHHhcC---CCEEEECCChHHh
Confidence 3589999999999999999999999999999999876655443211 1112466666655 9999999998532
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pv 133 (505)
-+ .....++++.++||++....... . +.....|+.++.+|-
T Consensus 227 ~~----~~l~~mk~~~~lin~ar~~~~~~--~-~~a~~~Gv~~~~~~~ 267 (293)
T 3d4o_A 227 TA----NVLAEMPSHTFVIDLASKPGGTD--F-RYAEKRGIKALLVPG 267 (293)
T ss_dssp CH----HHHHHSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCC
T ss_pred CH----HHHHhcCCCCEEEEecCCCCCCC--H-HHHHHCCCEEEECCC
Confidence 22 34456789999999997543321 2 444556888876653
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=94.89 Aligned_cols=99 Identities=15% Similarity=0.044 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcc---cCCCCeee-eCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHR---EGQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~---~g~~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||.++|..|+++| ++|++|||++++++.+...... .....+.. ..++ +.++. +|+||+++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~---aDvViiav 77 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALAD---ADVVISTL 77 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCC---CCEEEEec
Confidence 68999999999999999999999 7999999999887766532110 00001233 4565 44444 99999999
Q ss_pred CCCch-------------------HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGSP-------------------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~-------------------v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|.+.. ++++++.+.+.. ++.+|+..+|..
T Consensus 78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 125 (309)
T 1hyh_A 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPV 125 (309)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSH
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcH
Confidence 98653 467777777765 566777776643
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-07 Score=77.57 Aligned_cols=105 Identities=11% Similarity=0.019 Sum_probs=73.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
++++|.|+|+|.||..++..|.+.| ++|+++||++++.+.+...+.. ... ..+.+++.+.++++|+||.++|
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~-----~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVA-----TKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCE-----EEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCc-----EEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 4568999999999999999999999 9999999999988877633211 111 1234444444556999999997
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~ 119 (505)
.. ....+++... ..|..++|.++... .++++.+
T Consensus 79 ~~-~~~~~~~~~~---~~g~~~~~~~~~~~-~~~~~~~ 111 (118)
T 3ic5_A 79 FF-LTPIIAKAAK---AAGAHYFDLTEDVA-ATNAVRA 111 (118)
T ss_dssp GG-GHHHHHHHHH---HTTCEEECCCSCHH-HHHHHHH
T ss_pred ch-hhHHHHHHHH---HhCCCEEEecCcHH-HHHHHHH
Confidence 64 3444444433 36778888876543 4544443
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-07 Score=93.56 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=84.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++. +.+++++++. ..+|+|++|+|+
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~------~~~-~~~~~~~l~~-~~~D~V~i~tp~ 73 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY------GCE-VRTIDAIEAA-ADIDAVVICTPT 73 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT------TCE-ECCHHHHHHC-TTCCEEEECSCG
T ss_pred CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh------CCC-cCCHHHHhcC-CCCCEEEEeCCc
Confidence 457999999999999999999986 77866 7999999988877653 356 8999999983 238999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+. ..+. .|. ++++.- +..+.+.+++.+..+++|+.+.
T Consensus 74 ~~h~~~~~-~al~---~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 118 (331)
T 4hkt_A 74 DTHADLIE-RFAR---AGKAIFCEKPIDLDAERVRACLKVVSDTKAKLM 118 (331)
T ss_dssp GGHHHHHH-HHHH---TTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred hhHHHHHH-HHHH---cCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 75544333 3332 343 555543 5667788888888888887654
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=94.19 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=83.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~--G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++..+++++++++. ..+|+|++|+|
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 84 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT------GARGHASLTDMLAQ-TDADIVILTTP 84 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH------CCEEESCHHHHHHH-CCCSEEEECSC
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEECCC
Confidence 346899999999999999999987 77755 8999999988877653 35778999999973 23899999999
Q ss_pred CCchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 82 AGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
+....+.+. .. +..|. ++++.- +....+.+++.+..+++|+.+.
T Consensus 85 ~~~h~~~~~-~a---l~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~ 130 (354)
T 3q2i_A 85 SGLHPTQSI-EC---SEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF 130 (354)
T ss_dssp GGGHHHHHH-HH---HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHH-HH---HHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 975444333 33 23444 455432 4456777778777777777654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-07 Score=92.18 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=70.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHH---hhcc-c-CCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLD---RAHR-E-GQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~---~~~~-~-g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
+++||+|||+|.||.++|..|+.+|+ +|.+||+++++++.... .... . ...++..+.++ +.+++ +|+||+
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~VI~ 88 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN---SDVVII 88 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC---CCEEEE
Confidence 34689999999999999999999999 99999999987764221 1100 0 00146666777 44444 999999
Q ss_pred ecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 LVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+++.+. .++++.+.+.+.. ++.+++..||.
T Consensus 89 avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP 133 (328)
T 2hjr_A 89 TAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNP 133 (328)
T ss_dssp CCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred cCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 994331 2455667777765 67777777774
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-08 Score=101.88 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=88.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|.||..++..|.. ...+|.+|||++++.+++.+......+..+..+.++++++++ +|+|++|+|++
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~---aDiVi~aTps~ 205 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADK 205 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCS
T ss_pred CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhc---CCEEEEeccCC
Confidence 3579999999999999998864 356899999999999988865321000124667899999887 99999999986
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
. ...++. ...+.+|..|++.|+..|. .+++...+..++..|+|.
T Consensus 206 ~-~~pvl~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~ 249 (350)
T 1x7d_A 206 A-YATIIT--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEY 249 (350)
T ss_dssp S-EEEEEC--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESS
T ss_pred C-CCceec--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECC
Confidence 2 112221 2467899999999998776 455555666677789986
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-07 Score=92.63 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=84.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++|||||+|.||..++..|.+. +++|. ++|+++++.+.+.+.. +...+.+++++++. ..+|+|++|+|+.
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~~l~~-~~~D~V~i~tp~~ 76 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN------GAEAVASPDEVFAR-DDIDGIVIGSPTS 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT------TCEEESSHHHHTTC-SCCCEEEECSCGG
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEEeCCch
Confidence 46899999999999999999986 67766 8999999988876642 35678999999873 2389999999997
Q ss_pred chHHHHHHHHhhccCCC-CEEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 84 SPVDQTIAALSEHMSPG-DCIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
...+.+. ..+. .| .++++.- +..+.+.+++.+..++.|+.+.
T Consensus 77 ~h~~~~~-~al~---~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 120 (344)
T 3euw_A 77 THVDLIT-RAVE---RGIPALCEKPIDLDIEMVRACKEKIGDGASKVM 120 (344)
T ss_dssp GHHHHHH-HHHH---TTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEE
T ss_pred hhHHHHH-HHHH---cCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 5544333 3333 33 4666644 5566777788887777776554
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.7e-07 Score=92.60 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=83.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.... ...+++++++++. ..+|+|++|+|+.
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~-~~~D~V~i~tp~~ 75 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGV-----EKAYKDPHELIED-PNVDAVLVCSSTN 75 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEEEECSCGG
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCC-----CceeCCHHHHhcC-CCCCEEEEcCCCc
Confidence 46999999999999999999885 67765 789999998887765321 1478999999983 2389999999997
Q ss_pred chHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 84 SPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
...+.+. .. +..|. ++++.- +..+.+.+++.+..+++|+.+.
T Consensus 76 ~h~~~~~-~a---l~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~ 119 (344)
T 3ezy_A 76 THSELVI-AC---AKAKKHVFCEKPLSLNLADVDRMIEETKKADVILF 119 (344)
T ss_dssp GHHHHHH-HH---HHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred chHHHHH-HH---HhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 5444333 33 23344 666643 5566778888887777776554
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-07 Score=91.06 Aligned_cols=111 Identities=12% Similarity=0.133 Sum_probs=82.3
Q ss_pred CCcEEEEcccHHHHH-HHHHHHh-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~-~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||.. ++..|.+ .+++|. ++|+++++.+++.+.. ++..++++++++++ +|+|++++|+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------~~~~~~~~~~ll~~---~D~V~i~tp~ 76 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY------RIMPFDSIESLAKK---CDCIFLHSST 76 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH------TCCBCSCHHHHHTT---CSEEEECCCG
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc------CCCCcCCHHHHHhc---CCEEEEeCCc
Confidence 468999999999997 8888887 467776 8999999988887653 23447899999985 9999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEe-CCCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIID-GGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId-~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+ ...+ ..|. ++++ -.+..+.+.+++.+..+++|+.+.
T Consensus 77 ~~h~~~~-~~al---~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~ 121 (308)
T 3uuw_A 77 ETHYEII-KILL---NLGVHVYVDKPLASTVSQGEELIELSTKKNLNLM 121 (308)
T ss_dssp GGHHHHH-HHHH---HTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred HhHHHHH-HHHH---HCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 7554433 3333 3344 5555 345567788888888777776554
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=94.36 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=97.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+.+... ..+.+ ....+++++++. +|+|.+.+|-.+..
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~--~~~~~--------~~~~~l~ell~~---sDivslh~Plt~~T 208 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED--LKEKG--------CVYTSLDELLKE---SDVISLHVPYTKET 208 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHTT--------CEECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchh--hhhcC--------ceecCHHHHHhh---CCEEEEcCCCChhh
Confidence 579999999999999999999999999999876532 22221 235689999998 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ .+.+..+++|.++|++|-+..-+...+.+.|++..+.....-|.-.|+
T Consensus 209 ~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EP 261 (334)
T 3kb6_A 209 HHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEE 261 (334)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHH
T ss_pred ccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCC
Confidence 8777 567788999999999999999999999999988766555555666554
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.7e-07 Score=91.55 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=84.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++||||||+|.||..++.+|.+. +++|. ++|+++++.+++.+.. ++..+++++++++. ..+|+|++|+|+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~------g~~~~~~~~~~l~~-~~~D~V~i~tp~ 76 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY------NCAGDATMEALLAR-EDVEMVIITVPN 76 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH------TCCCCSSHHHHHHC-SSCCEEEECSCT
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEEeCCh
Confidence 346899999999999999999987 78855 8899999988877653 24557899999953 248999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+...+ ..|. ++++.- +..+.+.+++.+..+++|+.+.
T Consensus 77 ~~h~~~~~~al----~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~ 121 (354)
T 3db2_A 77 DKHAEVIEQCA----RSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL 121 (354)
T ss_dssp TSHHHHHHHHH----HTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHH----HcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 76554443332 3444 566543 5566778888887777777554
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-07 Score=93.08 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=81.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|.|||+|.||.+++..|++.|+ +|+++||++++.+++.+..... .. .. .+.+++.+.+..+|+||.++|.+.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~--~~-~~-~~~~~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDER--RS-AY-FSLAEAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSS--SC-CE-ECHHHHHHTGGGCSEEEECSCTTC
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhc--cC-ce-eeHHHHHhhhccCCEEEECCCCCC
Confidence 3579999999999999999999998 8999999999988887653210 00 11 122333333334999999999874
Q ss_pred hH--HHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 85 PV--DQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v--~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.- +.+ +. ...+.++.+++|.+.. |..|. +.+..+++|..+++
T Consensus 217 ~~~~~~~~i~--~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~v~ 261 (297)
T 2egg_A 217 HPRVEVQPLS--LERLRPGVIVSDIIYN-PLETK-WLKEAKARGARVQN 261 (297)
T ss_dssp SSCCSCCSSC--CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEEC
T ss_pred CCCCCCCCCC--HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCEEEC
Confidence 21 100 11 2346789999999985 65663 66677788887764
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.7e-07 Score=91.08 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=68.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhh---ccc-CCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRA---HRE-GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~---~~~-g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||.++|..|+.+|+ +|++||+++++++.+.... ... ...++.. .+. +.++ .+|+||+++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d~-~~~~---~aDvViiav 75 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GDY-ADLK---GSDVVIVAA 75 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CCG-GGGT---TCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CCH-HHhC---CCCEEEEcc
Confidence 589999999999999999999999 9999999998877654221 100 0002333 343 3334 499999999
Q ss_pred CCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|.+. .++++++.+.+.. ++.++|..||..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 119 (319)
T 1a5z_A 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (319)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcH
Confidence 9754 1456667777764 666777777654
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-07 Score=90.92 Aligned_cols=114 Identities=10% Similarity=0.096 Sum_probs=84.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++ ..+++++++++. ..+|+|++++|+
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~------~~~~~~~~~~~ll~~-~~~D~V~i~tp~ 77 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKEL------AIPVAYGSYEELCKD-ETIDIIYIPTYN 77 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHT------TCCCCBSSHHHHHHC-TTCSEEEECCCG
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHc------CCCceeCCHHHHhcC-CCCCEEEEcCCC
Confidence 46899999999999999999985 67766 7899999988877653 23 467899999873 238999999999
Q ss_pred CchHHHHHHHHhhccCCC-CEEEeCC-CCChhhHHHHHHHHHHcCCeEEc
Q 010652 83 GSPVDQTIAALSEHMSPG-DCIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g-~iiId~s-t~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
....+.+.. .+ ..| .++++.- +....+.+++.+..+++|+.+..
T Consensus 78 ~~h~~~~~~-al---~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v 123 (330)
T 3e9m_A 78 QGHYSAAKL-AL---SQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLME 123 (330)
T ss_dssp GGHHHHHHH-HH---HTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHH-HH---HCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 755443333 32 234 4666654 55667788888887888776543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.1e-07 Score=78.65 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=64.5
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHh-hcCCCcEEEE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVL-SIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~-~l~~advIil 78 (505)
|...++++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+.+.. -+.. ..+.+.+.+ .++++|+|+.
T Consensus 1 m~~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~~~~~d~vi~ 76 (144)
T 2hmt_A 1 MGRIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH----AVIANATEENELLSLGIRNFEYVIV 76 (144)
T ss_dssp -----CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSE----EEECCTTCHHHHHTTTGGGCSEEEE
T ss_pred CCCCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCE----EEEeCCCCHHHHHhcCCCCCCEEEE
Confidence 443234579999999999999999999999999999999887665433211 0111 123333322 1345999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+++.+......+...+..+.+..+|+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 77 AIGANIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp CCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 999853333333344444555555555444
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9.5e-07 Score=89.28 Aligned_cols=101 Identities=11% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHh---hcc--cCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR---AHR--EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~---~~~--~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.|||+|||+|.||.++|..|+.+|+ +|.+||+++++++..... ... ....++..+.++++.+++ +|+||++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~---aDiVi~a 85 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIVT 85 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC---CCEEEEc
Confidence 3689999999999999999999998 999999999877652211 000 001156777888876666 9999999
Q ss_pred c--CCCc------------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 V--KAGS------------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 v--p~~~------------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ |... .++++.+.+.+.. ++.+++..||-.
T Consensus 86 ~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~ 135 (331)
T 1pzg_A 86 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL 135 (331)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred cCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCch
Confidence 8 4311 1556667777765 677887776643
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=94.26 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=85.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|.||..++..|++ ...+|.+|||++++.+++.+.....+ ..+. +.++++++ + +|+|++|+|..
T Consensus 125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~-~~~~-~~~~~e~v-~---aDvVi~aTp~~ 198 (322)
T 1omo_A 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG-ISAS-VQPAEEAS-R---CDVLVTTTPSR 198 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT-CCEE-ECCHHHHT-S---SSEEEECCCCS
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC-ceEE-ECCHHHHh-C---CCEEEEeeCCC
Confidence 3589999999999999999987 34689999999999998876532110 1245 78999888 7 99999999986
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
.+ ++. ...+++|..|++.++..|. .+++...+..++..|+|.+
T Consensus 199 ~p---v~~--~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~~ 241 (322)
T 1omo_A 199 KP---VVK--AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDDL 241 (322)
T ss_dssp SC---CBC--GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESCH
T ss_pred Cc---eec--HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECCH
Confidence 43 221 2467899999999887766 3344444555566788863
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=89.01 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=83.4
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQ-NLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~-~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||. .++..|.+. +++|+ ++|+++++.+++.+.. ++..+.+++++++. ..+|+|++|+|+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~ll~~-~~~D~V~i~tp~ 99 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF------GGEPVEGYPALLER-DDVDAVYVPLPA 99 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH------CSEEEESHHHHHTC-TTCSEEEECCCG
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEECCCc
Confidence 35899999999998 799999887 77765 8899999988877653 34566899999874 348999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+... + ..|. ++++-- +....+.+++.+..+++|+.+.
T Consensus 100 ~~h~~~~~~a-l---~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 144 (350)
T 3rc1_A 100 VLHAEWIDRA-L---RAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM 144 (350)
T ss_dssp GGHHHHHHHH-H---HTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH-H---HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 7654433333 2 3444 566543 5566778888888888877654
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=87.77 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=67.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~-----~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.||.++|..|+.+ |++|.+||+++++++........ ....++..+.++++ ++. +|+||++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~---aDvViia 76 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN---SDIVIIT 76 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCC---CCEEEEe
Confidence 5899999999999999999985 79999999999887754311000 00013556677766 454 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+|.+. .++++.+.+.++. ++.+++..||
T Consensus 77 v~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tN 119 (310)
T 1guz_A 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN 119 (310)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC
Confidence 97641 2345556666664 5666666666
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=88.81 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=83.1
Q ss_pred CCcEEEEcccHHHHHHHHHHH-h-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-E-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~-~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|||||+|.||..++..|. + .+++|. ++|+++++.+++.+.... ....+++++++++. .++|+|++|+|+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 76 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQL----NATVYPNDDSLLAD-ENVDAVLVTSWG 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTC----CCEEESSHHHHHHC-TTCCEEEECSCG
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEECCCc
Confidence 468999999999999999998 5 467765 889999998887765320 14678999999874 347999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+.+. .. +..|. ++++.- +....+.+++.+..+++|+.+
T Consensus 77 ~~h~~~~~-~a---l~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 77 PAHESSVL-KA---IKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp GGHHHHHH-HH---HHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHH-HH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 75544333 32 33454 555543 456677778888777777754
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.4e-07 Score=98.42 Aligned_cols=111 Identities=14% Similarity=0.237 Sum_probs=82.6
Q ss_pred CchhhhhhHhHHHHHHHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHhccC-CcchhhHhhhhhhcccccccCCch
Q 010652 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKH------VGGLSNAELAEIFDEWNKG-ELESFLVEITADIFKVKDEYGEGE 254 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~------~g~l~~~~i~~~~~~~~~g-~~~s~l~~~~~~~l~~~~~~~~~~ 254 (505)
+.++++|+++|+++++.++..+|.+.++++ .. +|..++.++ |+.| ..+|++++...+.+.++.+. .+-
T Consensus 325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~-l~~~~ia~i---wr~GciIrs~~l~~i~~a~~~~~~l-~~l 399 (480)
T 2zyd_A 325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWD-LNYGEIAKI---FRAGCIIRAQFLQKITDACAENPQI-ANL 399 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCHHHHHHH---TSSSSTTCBTHHHHHHHHHHHCTTC-SCG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHH---HhcCcchHHHHHHHHHHHHhcCCCh-Hhh
Confidence 789999999999999999999999999998 45 888888776 8876 46899999776777653322 221
Q ss_pred hH-HHHHhhhCCCc-cHHHHHHHHHHcCCCcchhHHHHHHHHHcccc
Q 010652 255 LV-DKILDKTGMKG-TGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 255 ~l-d~i~~~~~~kg-tg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~ 299 (505)
++ +.+.+.+...+ .+||++..|.+.|||+|.+++|+.. +.+++
T Consensus 400 ~~~~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~--~~~~~ 444 (480)
T 2zyd_A 400 LLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAY--YDSYR 444 (480)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH--HHHHT
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--HHhcc
Confidence 11 11222222234 4899999999999999999999764 44443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-07 Score=80.28 Aligned_cols=112 Identities=12% Similarity=0.086 Sum_probs=68.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH-HhhcccCCCCeeee-CCHHHHHh-hcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTGH-YTPRDFVL-SIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~-~~~~~~g~~~i~~~-~s~~e~v~-~l~~advIil~vp~ 82 (505)
.++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+. ..+.. -+... .+.+.+.+ .++.+|+||+++++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~----~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF----TVVGDAAEFETLKECGMEKADMVFAFTND 94 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE----EEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc----EEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence 36899999999999999999999999999999998876554 22211 01111 12332222 14459999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+. ....+..+...+.+...++-..+.. ... +.+.+.|+.
T Consensus 95 ~~-~~~~~~~~~~~~~~~~~iv~~~~~~-~~~----~~l~~~G~~ 133 (155)
T 2g1u_A 95 DS-TNFFISMNARYMFNVENVIARVYDP-EKI----KIFEENGIK 133 (155)
T ss_dssp HH-HHHHHHHHHHHTSCCSEEEEECSSG-GGH----HHHHTTTCE
T ss_pred cH-HHHHHHHHHHHHCCCCeEEEEECCH-HHH----HHHHHCCCc
Confidence 54 4444444445433334344333332 222 234456666
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-07 Score=98.18 Aligned_cols=109 Identities=14% Similarity=0.288 Sum_probs=82.2
Q ss_pred CchhhhhhHhHHHHHHHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHhccC-CcchhhHhhhhhhcccccccCC--
Q 010652 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKH------VGGLSNAELAEIFDEWNKG-ELESFLVEITADIFKVKDEYGE-- 252 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~------~g~l~~~~i~~~~~~~~~g-~~~s~l~~~~~~~l~~~~~~~~-- 252 (505)
+.++++|++||++.++.++..+|.+.++++ .. +|..++.++ |+.| ..+|++++...+.+.++.+...
T Consensus 317 ~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~-l~~~~ia~~---wr~Gciirs~~l~~i~~a~~~~~~l~~l~ 392 (474)
T 2iz1_A 317 DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWD-LPYGTIAQI---WRAGCIIRAEFLQNITDAFDKDSELENLL 392 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCHHHHHHH---TSSSCTTCBTTHHHHHHHHHHCTTCCCGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHH---HhccchHHHHHHHHHHHHHhcCCChhhhh
Confidence 889999999999999999999999999998 35 888888776 8876 4679999876677665322221
Q ss_pred --chhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccc
Q 010652 253 --GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 253 --~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~ 299 (505)
.|..+.+.+. -+.+||++..|.++|+|+|.+++|+. + +.+++
T Consensus 393 ~~~~~~~~~~~~---~~~~r~~v~~a~~~~~p~p~~s~al~-~-~~~~~ 436 (474)
T 2iz1_A 393 LDDYFVDITKRY---QEAVRDVVSLAVQAGTPIPTFTSAIS-Y-YDSYR 436 (474)
T ss_dssp GSHHHHHHHHHH---HHHHHHHHHHHHHHTCCCHHHHHHHH-H-HHHHT
T ss_pred cCHHHHHHHHHH---HHHHHHHHHHHHHcCCCHHHHHHHHH-H-HHhcc
Confidence 1122333332 14589999999999999999999976 4 44443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-06 Score=85.69 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=68.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH--HH-Hhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE--TL-DRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~--~~-~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||+|||+|.||..+|..|+.+|+ +|+++||++++++. .. ..+... +..++....+.+ .+. .+|+||+
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~aD~Vii 81 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICR---DADMVVI 81 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGT---TCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH-HhC---CCCEEEE
Confidence 45799999999999999999999999 99999999877652 21 221100 001233333443 333 4999999
Q ss_pred ecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 79 LVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+++.+. .++++++.+.+. .++.+|+..+|..
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~ 127 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 127 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCch
Confidence 996542 233566777774 6788888888764
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-06 Score=86.03 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=66.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-----~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++||+|||+|.||.+++..|+.+|+ +|.++|+++++++........ ....++..+.+. +.+++ +|+||++
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~---aD~Vi~a 77 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTAN---SDVIVVT 77 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCC---CCEEEEc
Confidence 4699999999999999999999997 999999998876543221100 001145665676 33444 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+. .++++.+.+.+.. ++.+|+..||-
T Consensus 78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP 121 (309)
T 1ur5_A 78 SGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNP 121 (309)
T ss_dssp CCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCc
Confidence 85542 1234445555554 67777777663
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-06 Score=86.49 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=69.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-----~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++||+|||+|.||.++|..|+.+|+ +|.++|+++++++........ ....++..+.+. +.+++ +|+||++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG---ADVVIVT 79 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEEe
Confidence 4689999999999999999999998 999999999876543211100 001146666777 44444 9999999
Q ss_pred cCCC--------------------chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAG--------------------SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~--------------------~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+ ..++++.+.+.+.. ++.++|..||.
T Consensus 80 ~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 128 (322)
T 1t2d_A 80 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNP 128 (322)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSS
T ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 8332 12555666777765 67777777663
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=86.40 Aligned_cols=98 Identities=11% Similarity=0.212 Sum_probs=65.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc----CCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~----g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||.++|..|+.+|+ +|.++|+++++++......... ...++.. .+. +. ++.+|+||+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~-~a---~~~aDvVIi~~ 75 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-GGH-SE---LADAQVVILTA 75 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-ECG-GG---GTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-CCH-HH---hCCCCEEEEcC
Confidence 589999999999999999999999 9999999998765433221110 0002332 343 33 34499999999
Q ss_pred CCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.+. .++++++.+.+. .++.+++..||..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~ 119 (304)
T 2v6b_A 76 GANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPV 119 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSH
T ss_pred CCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 6543 235666777776 4777877777754
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-07 Score=95.87 Aligned_cols=118 Identities=7% Similarity=0.156 Sum_probs=88.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHHhCCCcchhhHHHHHHHHHhcCCCCCCCc
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELA---RIWKGGCIIRAVFLDRIKKAYQRNPNLASLV 401 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~---~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll 401 (505)
.+.++++|+++|++.++.|+.++|++.+++++ .++|.+++. ..|+.| .++|++++....++.+++.-+...
T Consensus 183 ~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----lGl~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~ 256 (497)
T 2p4q_A 183 AGAGHYVKMVHNGIEYGDMQLICEAYDIMKRL-----GGFTDKEISDVFAKWNNG-VLDSFLVEITRDILKFDDVDGKPL 256 (497)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHTT-TTCBHHHHHHHHHHTCBCTTSSBG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHhcCC-ccccHHHHHHHHHHhcCCCCCccH
Confidence 47899999999999999999999999999863 226766655 558888 579999998877766532212234
Q ss_pred chhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
++...+...+|+++ +|++..|.+.|+|+|.+.++++ +.+.++.+|..
T Consensus 257 vd~i~D~~~~KgtG--~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~ 305 (497)
T 2p4q_A 257 VEKIMDTAGQKGTG--KWTAINALDLGMPVTLIGEAVFARCLSALKNERIR 305 (497)
T ss_dssp GGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhhccchHH--HHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHH
Confidence 44333334446667 8999999999999999999986 66677666543
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-06 Score=87.04 Aligned_cols=114 Identities=11% Similarity=0.164 Sum_probs=80.6
Q ss_pred CCcEEEEcccHHHHHHHHHHH-h-CCCcE-EEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-E-KGFPI-SVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~-~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++|||||+|.||..++..|. + .|++| .++|+++++.+.+.+.. ++ ..+.+++++++. .++|+|++++|
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~------g~~~~~~~~~~~l~~-~~~D~V~i~tp 80 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL------GVETTYTNYKDMIDT-ENIDAIFIVAP 80 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT------CCSEEESCHHHHHTT-SCCSEEEECSC
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh------CCCcccCCHHHHhcC-CCCCEEEEeCC
Confidence 468999999999999999998 5 47774 58999999988776542 23 567899998863 23899999999
Q ss_pred CCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHc-CCeEEc
Q 010652 82 AGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQK-GLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~-gi~~v~ 130 (505)
+....+.+.. . +..|. ++++. .+....+.+++.+..+++ |+.+..
T Consensus 81 ~~~h~~~~~~-a---l~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~ 128 (346)
T 3cea_A 81 TPFHPEMTIY-A---MNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQS 128 (346)
T ss_dssp GGGHHHHHHH-H---HHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEEC
T ss_pred hHhHHHHHHH-H---HHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 8654443333 2 33465 55553 344556677777777777 766553
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=86.55 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=80.1
Q ss_pred CCcEEEEcccHHHHH-HHHHHHh-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~-~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|||||+|.||.. ++..|.+ .+++|. ++|+++++.+++.+.. ++..+++++++.. .+|+|++++|+
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~------g~~~~~~~~~l~~---~~D~V~i~tp~ 75 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW------RIPYADSLSSLAA---SCDAVFVHSST 75 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH------TCCBCSSHHHHHT---TCSEEEECSCT
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc------CCCccCcHHHhhc---CCCEEEEeCCc
Confidence 468999999999997 8888876 467766 8999999988776542 2345678887733 49999999998
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEEc
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
....+.+ ... +..|. ++++. .+..+.+.+++.+..++.|+.+..
T Consensus 76 ~~h~~~~-~~a---l~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 76 ASHFDVV-STL---LNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp THHHHHH-HHH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHH-HHH---HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 7544333 332 33555 66663 455667788888877787776543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=9.5e-08 Score=94.11 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=75.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|+|+|.||++++..|++.|. +|+++||++++.+++.... ......++++++.. +|+||.++|.+-.
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~------~~~~~~~~~~~~~~---aDiVInaTp~Gm~ 188 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI------NKINLSHAESHLDE---FDIIINTTPAGMN 188 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCC------EEECHHHHHHTGGG---CSEEEECCC----
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhc------ccccHhhHHHHhcC---CCEEEECccCCCC
Confidence 579999999999999999999999 8999999998876654321 11222334444444 9999999998621
Q ss_pred --HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 --VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+...+ -...+.++.+|+|.... |..| ++.+..+++|...++
T Consensus 189 ~~~~~~l--~~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~~G~~~~~ 231 (277)
T 3don_A 189 GNTDSVI--SLNRLASHTLVSDIVYN-PYKT-PILIEAEQRGNPIYN 231 (277)
T ss_dssp ---CCSS--CCTTCCSSCEEEESCCS-SSSC-HHHHHHHHTTCCEEC
T ss_pred CCCcCCC--CHHHcCCCCEEEEecCC-CCCC-HHHHHHHHCcCEEeC
Confidence 11111 12347789999999887 4445 466667788876543
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=87.39 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=77.0
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQ-NLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~-~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|||||+|.||. .++..|.+. +++|.++|+++++.+++.+... +.. +.+..+++. ..+|+|++++|+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g------~~~~~~~~~~~l~--~~~D~V~i~tp~ 73 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR------VSATCTDYRDVLQ--YGVDAVMIHAAT 73 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT------CCCCCSSTTGGGG--GCCSEEEECSCG
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC------CCccccCHHHHhh--cCCCEEEEECCc
Confidence 46899999999998 499999875 6788899999999888776431 222 334444442 248999999998
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
.... +++... +..|. ++++. .+....+.+++.+..+++|+.+.
T Consensus 74 ~~h~-~~~~~a---l~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 118 (323)
T 1xea_A 74 DVHS-TLAAFF---LHLGIPTFVDKPLAASAQECENLYELAEKHHQPLY 118 (323)
T ss_dssp GGHH-HHHHHH---HHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred hhHH-HHHHHH---HHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEE
Confidence 6443 333333 33454 66663 44556777788887777777654
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=87.22 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=82.8
Q ss_pred CCcEEEEcccHHHHHHHHHHH-h-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-E-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~-~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|||||+|.||..++..|. + .+++|. ++|+++++.+++.+.... ....+.+++++++. .++|+|++|+|+
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 97 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAI----EAKDYNDYHDLIND-KDVEVVIITASN 97 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTC----CCEEESSHHHHHHC-TTCCEEEECSCG
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEEcCCc
Confidence 458999999999999999998 4 477765 799999998887765321 14678999999874 248999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+.+.. .+ ..|. ++++-- +....+.+++.+..++.|+.+
T Consensus 98 ~~h~~~~~~-al---~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 98 EAHADVAVA-AL---NANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp GGHHHHHHH-HH---HTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHH-HH---HCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 765443333 32 3343 555533 456677888888777777754
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-06 Score=84.85 Aligned_cols=113 Identities=10% Similarity=0.165 Sum_probs=82.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---Cc-EEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG---FP-ISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G---~~-V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~v 80 (505)
++||||||+|.||..++..|.+.+ ++ |.++||++++.+++.+... + ..++++++++++ ...|+|++++
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~vD~V~i~t 74 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD------IPKAYGSYEELAKD-PNVEVAYVGT 74 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHT------CSCEESSHHHHHHC-TTCCEEEECC
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEECC
Confidence 469999999999999999998764 34 5588999999888876532 3 468899999984 2489999999
Q ss_pred CCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 81 KAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
|+....+.+... +..|+ ++++- -+....+.+++.+..+++|+.+.
T Consensus 75 p~~~H~~~~~~a----l~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 121 (334)
T 3ohs_X 75 QHPQHKAAVMLC----LAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLM 121 (334)
T ss_dssp CGGGHHHHHHHH----HHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred CcHHHHHHHHHH----HhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 997654433332 33444 55653 24566778888887777777554
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-06 Score=84.41 Aligned_cols=114 Identities=10% Similarity=0.101 Sum_probs=82.1
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNL-ALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~l-A~~La~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++|||||+|.||..+ +..|.+.|++|. ++|+++++.+++.+.. ++ ..+++++++++. .++|+|++++|+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~------g~~~~~~~~~~~l~~-~~~D~V~i~tp~~ 73 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATEN------GIGKSVTSVEELVGD-PDVDAVYVSTTNE 73 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHT------TCSCCBSCHHHHHTC-TTCCEEEECSCGG
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHc------CCCcccCCHHHHhcC-CCCCEEEEeCChh
Confidence 479999999999998 888888788865 8899999988776642 12 357899998863 2389999999986
Q ss_pred chHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
... +++... +..|. ++++. .+....+.+++.+..+++|+.+...
T Consensus 74 ~h~-~~~~~a---l~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~ 119 (332)
T 2glx_A 74 LHR-EQTLAA---IRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTN 119 (332)
T ss_dssp GHH-HHHHHH---HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred HhH-HHHHHH---HHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 543 333333 33565 55653 3456677778888777778766543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.1e-07 Score=87.23 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=74.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+|+|||+|.||++++..|++.|. +|+++||++++.+++.+.. +.....++++.++. +|+||.++|.+-.-
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~------~~~~~~~~~~~~~~---aDiVInatp~gm~p 180 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV------KIFSLDQLDEVVKK---AKSLFNTTSVGMKG 180 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSC------EEEEGGGHHHHHHT---CSEEEECSSTTTTS
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc------ccCCHHHHHhhhcC---CCEEEECCCCCCCC
Confidence 89999999999999999999998 8999999999877665432 12344566677766 99999999875210
Q ss_pred -HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 -DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 -~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
...+. ...+.++.+|+|.... + | ...+..+++|+.
T Consensus 181 ~~~~i~--~~~l~~~~~V~Divy~-~--T-~ll~~A~~~G~~ 216 (253)
T 3u62_A 181 EELPVS--DDSLKNLSLVYDVIYF-D--T-PLVVKARKLGVK 216 (253)
T ss_dssp CCCSCC--HHHHTTCSEEEECSSS-C--C-HHHHHHHHHTCS
T ss_pred CCCCCC--HHHhCcCCEEEEeeCC-C--c-HHHHHHHHCCCc
Confidence 00111 1235689999998877 2 3 333444556765
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-06 Score=92.73 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=78.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+++|+++...|.+|++||+++.+..+....+ +. ..++++++.. +|+|++++.+..
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g-------~~-~~~l~ell~~---aDiVi~~~~t~~-- 324 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNVD-- 324 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSSS--
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcC-------CE-ecCHHHHHhc---CCEEEECCChhh--
Confidence 5799999999999999999999999999999998754444332 33 3588888876 999999964432
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCCh-hhHHHHHH
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWY-LNTERRIH 119 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~-~~t~~~~~ 119 (505)
++ .+.+..+++|.+|||.+.... -+...+.+
T Consensus 325 --lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 325 --VIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp --SBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred --hcCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 23 456677999999999999988 47777766
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.9e-06 Score=79.23 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHh-hcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVL-SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~-~l~~advIil~vp~~~ 84 (505)
|+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+..... -+... .+.+.+-+ .++++|+|+++++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~---~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d- 76 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT---IIHGDGSHKEILRDAEVSKNDVVVILTPRD- 76 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE---EEESCTTSHHHHHHHTCCTTCEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe---EEEcCCCCHHHHHhcCcccCCEEEEecCCc-
Confidence 5899999999999999999999999999999999988876532110 01111 23222222 256799999999885
Q ss_pred hHHHHHHHHhhc-cCCCCEEEeC
Q 010652 85 PVDQTIAALSEH-MSPGDCIIDG 106 (505)
Q Consensus 85 ~v~~vl~~l~~~-l~~g~iiId~ 106 (505)
.....+..++.. .+...+|+-.
T Consensus 77 ~~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 77 EVNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEE
Confidence 444455555554 3344444433
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-07 Score=80.54 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=80.9
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ |.||..++.+|.+.||+ +|++||.+..+ + .. ++..+.|++|+.+. +|++++++|+
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~---~--i~---G~~~~~sl~el~~~---vDlavi~vp~ 80 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE---E--LF---GEEAVASLLDLKEP---VDILDVFRPP 80 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS---E--ET---TEECBSSGGGCCSC---CSEEEECSCH
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC---c--CC---CEEecCCHHHCCCC---CCEEEEEeCH
Confidence 57999999 89999999999999997 77788764211 1 11 36677889988765 9999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+.+.++++++...- .+.+|+..++. .+++.+.+++.|+.+++.
T Consensus 81 -~~~~~v~~~~~~~g-i~~i~~~~g~~----~~~~~~~a~~~Gir~vgp 123 (140)
T 1iuk_A 81 -SALMDHLPEVLALR-PGLVWLQSGIR----HPEFEKALKEAGIPVVAD 123 (140)
T ss_dssp -HHHTTTHHHHHHHC-CSCEEECTTCC----CHHHHHHHHHTTCCEEES
T ss_pred -HHHHHHHHHHHHcC-CCEEEEcCCcC----HHHHHHHHHHcCCEEEcC
Confidence 67888888777644 34677776554 356777778889999973
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=93.08 Aligned_cols=117 Identities=8% Similarity=0.127 Sum_probs=85.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhHHHHHHHHHhcCCCCCCCc
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNPNLASLV 401 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~i---W~~GciIrs~lL~~i~~~~~~~~~~~~ll 401 (505)
.+.++++|+++|++.++.++.++|++.++++.. +++.+++.++ |+.| .+.|++++.....+.+++......
T Consensus 176 ~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~-----G~~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~ 249 (482)
T 2pgd_A 176 DGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVL-----GLGHKEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHL 249 (482)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CcCHHHHHHHHHHhcCC-CcCchHHHHHhHHhhccCCCCCee
Confidence 468899999999999999999999999998641 2666665555 8888 468989888777666543222344
Q ss_pred chhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010652 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~ 449 (505)
+|...+...+++++ +|++..|.++|+|+|.+.+++. +.+.++.+|.
T Consensus 250 ld~i~d~~~~k~t~--~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~ 297 (482)
T 2pgd_A 250 LPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 297 (482)
T ss_dssp GGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred ecccccccccccHH--HHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHH
Confidence 44444444445556 9999999999999999987666 4556655554
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=87.76 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=90.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++|||||+|.||..++..|.+. ++++ .++|+++++.+++.+. +..+.+++++++. ..+|+|++++|+.
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~--------~~~~~~~~~~l~~-~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG--------CVIESDWRSVVSA-PEVEAVIIATPPA 80 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT--------CEEESSTHHHHTC-TTCCEEEEESCGG
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh--------CcccCCHHHHhhC-CCCCEEEEeCChH
Confidence 46899999999999999999986 6764 5899999876554332 3567899998852 2389999999986
Q ss_pred chHHHHHHHHhhccCCCC-EEEe-CCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHH
Q 010652 84 SPVDQTIAALSEHMSPGD-CIID-GGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iiId-~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~l 161 (505)
... +++... +..|. ++++ -.+....+.+++.+..+++|+.+....... . + ..+..++++
T Consensus 81 ~h~-~~~~~a---l~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r------~--------~-p~~~~~~~~ 141 (315)
T 3c1a_A 81 THA-EITLAA---IASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQL------F--------N-PAWEALKAD 141 (315)
T ss_dssp GHH-HHHHHH---HHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGG------G--------C-HHHHHHHHT
T ss_pred HHH-HHHHHH---HHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechh------c--------C-HHHHHHHHH
Confidence 543 333333 33454 6666 345566777788887777777654332111 0 1 235667777
Q ss_pred HHHhh
Q 010652 162 LQKVA 166 (505)
Q Consensus 162 l~~ig 166 (505)
++.+|
T Consensus 142 i~~lG 146 (315)
T 3c1a_A 142 LTSIG 146 (315)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 77676
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.28 E-value=9e-07 Score=88.71 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=80.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|+|||+|.||..++..|.+. ..+|.+|||+ +.+++.+.... .| ..+..+ ++++++++ +|+|++|+|..
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g-~~~~~~-~~~eav~~---aDIVi~aT~s~ 194 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCG-VPARMA-APADIAAQ---ADIVVTATRST 194 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHT-SCEEEC-CHHHHHHH---CSEEEECCCCS
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcC-CeEEEe-CHHHHHhh---CCEEEEccCCC
Confidence 5799999999999999999863 4589999999 55555543110 01 134566 99999988 99999999986
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcC-CeEEcC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG-LLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~g-i~~v~~ 131 (505)
.++ +. .+.+++|.+|++.++..|.. +++...+-.+. ..|+|.
T Consensus 195 ~pv---l~--~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~ 237 (313)
T 3hdj_A 195 TPL---FA--GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEW 237 (313)
T ss_dssp SCS---SC--GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESC
T ss_pred Ccc---cC--HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECC
Confidence 432 22 35688999999999987754 44444443344 467884
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.1e-06 Score=84.76 Aligned_cols=112 Identities=12% Similarity=0.134 Sum_probs=80.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+.+|||||+|.||...+.+|.+. +++|. ++|+++++.+.+... ++..+++++++++. ...|+|++|+|+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~-------g~~~~~~~~~ll~~-~~~D~V~i~tp~~ 76 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQK-------GLKIYESYEAVLAD-EKVDAVLIATPND 76 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTT-------TCCBCSCHHHHHHC-TTCCEEEECSCGG
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhc-------CCceeCCHHHHhcC-CCCCEEEEcCCcH
Confidence 35899999999999999999887 67765 789999987643221 35678999999983 2389999999997
Q ss_pred chHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
...+.+... +..|+ ++++- -+....+.+++.+..+++|+.+.
T Consensus 77 ~h~~~~~~a----l~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (359)
T 3e18_A 77 SHKELAISA----LEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFM 120 (359)
T ss_dssp GHHHHHHHH----HHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHH----HHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 554443332 33454 55553 24456778888887777776553
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-06 Score=90.78 Aligned_cols=101 Identities=9% Similarity=-0.047 Sum_probs=77.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.+...|.+|++|||++.+..+....+ +. ..++++++.. +|+|++++.+...+
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G-------~~-~~~l~ell~~---aDiVi~~~~t~~lI 346 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEG-------YR-VVTMEYAADK---ADIFVTATGNYHVI 346 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcC-------CE-eCCHHHHHhc---CCEEEECCCccccc
Confidence 5799999999999999999999999999999998753333322 23 3588888876 99999998543222
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChh-hHHHHHHHHH
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEAS 122 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~-~t~~~~~~l~ 122 (505)
. .+.+..+++|.+|||.+..... +...+ +.+.
T Consensus 347 ~---~~~l~~MK~gAilINvgrg~veID~~aL-~AL~ 379 (494)
T 3d64_A 347 N---HDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQ 379 (494)
T ss_dssp C---HHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSE
T ss_pred C---HHHHhhCCCCcEEEEcCCCcchhchHHH-Hhhh
Confidence 1 4566778999999999998764 66555 4443
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.3e-06 Score=86.15 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=79.6
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|||||+|.||.. ++..|.+. +++|. ++|+++++.+.+.+... ....+++++++++. .+.|+|++++|+
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 78 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFIS-----DIPVLDNVPAMLNQ-VPLDAVVMAGPP 78 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSC-----SCCEESSHHHHHHH-SCCSEEEECSCH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEcCCc
Confidence 368999999999995 88999876 67765 88999998877765421 24678999999986 235999999998
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+.+.. .+..|. ++++-- +....+.+++.+..+++|+.+
T Consensus 79 ~~H~~~~~~----al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~ 122 (359)
T 3m2t_A 79 QLHFEMGLL----AMSKGVNVFVEKPPCATLEELETLIDAARRSDVVS 122 (359)
T ss_dssp HHHHHHHHH----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHH----HHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 654433332 233454 555532 445567777777777777644
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-06 Score=83.90 Aligned_cols=114 Identities=8% Similarity=0.086 Sum_probs=83.7
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQ-NLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~-~lA~~La~~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++|||||+|.||. .++..|...|++| .++|+++++.+++.+... ....++++++++++ .+.|+|++++|+.
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 77 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFP-----SVPFAASAEQLITD-ASIDLIACAVIPC 77 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHST-----TCCBCSCHHHHHTC-TTCCEEEECSCGG
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcC-----CCcccCCHHHHhhC-CCCCEEEEeCChh
Confidence 47999999999996 6888887788985 689999999888776531 24567899999873 2389999999997
Q ss_pred chHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
...+.++.. +..|+ ++++. .+....+.+++.+..+++|+.+.
T Consensus 78 ~h~~~~~~a----l~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 78 DRAELALRT----LDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp GHHHHHHHH----HHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred hHHHHHHHH----HHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 654444333 33455 66664 45566777888887777776554
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.9e-06 Score=85.85 Aligned_cols=122 Identities=15% Similarity=0.116 Sum_probs=86.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+|||.|+|+|.+|+.++..|++ .++|.+.|++.++++++.+... .+.. ..+.+++.+.++++|+||.|+|..
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~-----~~~~d~~d~~~l~~~~~~~DvVi~~~p~~- 88 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFAT-----PLKVDASNFDKLVEVMKEFELVIGALPGF- 88 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSE-----EEECCTTCHHHHHHHHTTCSEEEECCCGG-
T ss_pred ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCC-----cEEEecCCHHHHHHHHhCCCEEEEecCCc-
Confidence 4799999999999999999876 5899999999998887654321 1121 235555555556699999999885
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChh
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~ 138 (505)
.-..+++.. +..|.-++|.|-.. ....++.+..++.|+.++ ++++..|..
T Consensus 89 ~~~~v~~~~---~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~~~G~~PG~~ 139 (365)
T 3abi_A 89 LGFKSIKAA---IKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIVFDAGFAPGLS 139 (365)
T ss_dssp GHHHHHHHH---HHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEECCCBTTTBHH
T ss_pred ccchHHHHH---HhcCcceEeeeccc-hhhhhhhhhhccCCceeeecCCCCCchH
Confidence 334444443 44688899987544 455667777778888766 467766643
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-06 Score=89.66 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCC-----eeee----------CCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP-----LTGH----------YTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~-----i~~~----------~s~~e~v~~l~ 71 (505)
.+|+|||+|.||..+++.+...|.+|++|||++++.+.+.+.+...-.+. .... ...+.+.+.++
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~ 264 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAIT 264 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHh
Confidence 58999999999999999999999999999999999888776443100000 0000 01122333334
Q ss_pred CCcEEEEec--CCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 72 RPRSVIILV--KAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 72 ~advIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
++|+||.++ |....-.-+-++++..+++|.+|||.+-
T Consensus 265 ~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 265 KFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp TCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred cCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence 599999986 4321111122677788899999999874
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=7.2e-06 Score=82.27 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=67.2
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccC-CC--CeeeeCCHHHHHhhcCCCcE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREG-QL--PLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g-~~--~i~~~~s~~e~v~~l~~adv 75 (505)
|+..+++||+|||+|.||.++|..|+.+|. +|.++|+++++.+.......... .. +.+...+..+.++ .+|+
T Consensus 1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~---~aDv 77 (316)
T 1ldn_A 1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCR---DADL 77 (316)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTT---TCSE
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhC---CCCE
Confidence 655556799999999999999999998885 89999999876553221110000 00 1222233333344 4999
Q ss_pred EEEecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 76 VIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 76 Iil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
||++++.+. .++++.+.+.+.. ++.+++..||-
T Consensus 78 Viia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNP 125 (316)
T 1ldn_A 78 VVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNP 125 (316)
T ss_dssp EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSS
T ss_pred EEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCc
Confidence 999987653 2344445666654 66667777773
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=89.33 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=69.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe---------e-e------------eCCHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL---------T-G------------HYTPR 64 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i---------~-~------------~~s~~ 64 (505)
.+|+|||+|.||..+++.+...|.+|++||+++++.+.+.+.+...-...+ . . ..+++
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~ 270 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVA 270 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHH
Confidence 589999999999999999999999999999999988877664431000000 0 0 11345
Q ss_pred HHHhhcCCCcEEEEec--CCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 65 DFVLSIQRPRSVIILV--KAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 65 e~v~~l~~advIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+++.. +|+||.++ |...+-.-+-++.+..+++|.+|||++.
T Consensus 271 e~l~~---aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 271 EHIAK---QDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHT---CSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred HHhcC---CCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence 55555 99999986 4322111122677888999999999974
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.4e-06 Score=88.56 Aligned_cols=91 Identities=10% Similarity=0.026 Sum_probs=72.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.+|..+|..|...|.+|+++|+++.+.......+ +. ..+++++++. +|+|+++..+...+
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G-------~~-~~sL~eal~~---ADVVilt~gt~~iI 280 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEG-------YQ-VLLVEDVVEE---AHIFVTTTGNDDII 280 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCSCSB
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhC-------Ce-ecCHHHHHhh---CCEEEECCCCcCcc
Confidence 5799999999999999999999999999999997765554433 22 3589998887 99999866543322
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
. .+....+++|.+||+.+...+
T Consensus 281 ~---~e~l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 281 T---SEHFPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp C---TTTGGGCCTTEEEEECSSSGG
T ss_pred C---HHHHhhcCCCcEEEEeCCCCC
Confidence 2 355677899999999998765
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.9e-07 Score=86.64 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=77.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|||+|-||++++..|++.|.+|+++||++++.+++.+.+ +... +.+++. .+|+||.++|.+...
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~-------~~~~-~~~~l~----~~DiVInaTp~Gm~~ 186 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLG-------CDCF-MEPPKS----AFDLIINATSASLHN 186 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHT-------CEEE-SSCCSS----CCSEEEECCTTCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------CeEe-cHHHhc----cCCEEEEcccCCCCC
Confidence 5799999999999999999999999999999999998887222 2222 233322 499999999987321
Q ss_pred HHHH--HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 87 DQTI--AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl--~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+..+ +.+...++++.+++|.... | .|. +.+..+++|+..++
T Consensus 187 ~~~l~~~~l~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~~G~~~~~ 229 (269)
T 3phh_A 187 ELPLNKEVLKGYFKEGKLAYDLAYG-F-LTP-FLSLAKELKTPFQD 229 (269)
T ss_dssp SCSSCHHHHHHHHHHCSEEEESCCS-S-CCH-HHHHHHHTTCCEEC
T ss_pred CCCCChHHHHhhCCCCCEEEEeCCC-C-chH-HHHHHHHCcCEEEC
Confidence 1111 2223345578999999886 4 553 66667778776554
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=7.9e-06 Score=82.00 Aligned_cols=105 Identities=12% Similarity=0.111 Sum_probs=65.8
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHH---hhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLD---RAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~---~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|..++++||+|||+|.+|.+++..|+.+|. +|.++|+++++++.... .........+....+..+.+++ +|+
T Consensus 1 m~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~---aDv 77 (317)
T 3d0o_A 1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHD---ADL 77 (317)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTT---CSE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCC---CCE
Confidence 443345799999999999999999999885 89999999876653211 1110000022232233444444 999
Q ss_pred EEEecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 76 VIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 76 Iil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
||++++.+. .++++.+.+.++ .++.+|+..||-
T Consensus 78 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (317)
T 3d0o_A 78 VVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNP 125 (317)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 999986652 234444566665 577777776653
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-06 Score=77.96 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=78.4
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ |.+|..++.+|.+.||+ +|++++.+ + .. . ++..+.+++|+.+. +|++++++|+
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~----~i--~---G~~~y~sl~~l~~~---vDlvvi~vp~ 87 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-E----EV--L---GRKCYPSVLDIPDK---IEVVDLFVKP 87 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-S----EE--T---TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-C----eE--C---CeeccCCHHHcCCC---CCEEEEEeCH
Confidence 57999999 79999999999999997 66666653 1 11 1 36777889988765 9999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
..+.++++++...- .+.+++..++. .+++.+.+++.|+++++.
T Consensus 88 -~~~~~vv~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~~Gi~vvGp 130 (144)
T 2d59_A 88 -KLTMEYVEQAIKKG-AKVVWFQYNTY----NREASKKADEAGLIIVAN 130 (144)
T ss_dssp -HHHHHHHHHHHHHT-CSEEEECTTCC----CHHHHHHHHHTTCEEEES
T ss_pred -HHHHHHHHHHHHcC-CCEEEECCCch----HHHHHHHHHHcCCEEEcC
Confidence 57888888777643 34566554432 456777778889999874
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.7e-06 Score=84.63 Aligned_cols=114 Identities=12% Similarity=0.106 Sum_probs=79.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||..++..|.+. +++| .++|+++++.+++.+.. ++ ..+.++++++++ ..+|+|++++|+
T Consensus 5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~------~~~~~~~~~~~ll~~-~~~D~V~i~tp~ 77 (329)
T 3evn_A 5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKY------HLPKAYDKLEDMLAD-ESIDVIYVATIN 77 (329)
T ss_dssp CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CC------CCSCEESCHHHHHTC-TTCCEEEECSCG
T ss_pred ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHc------CCCcccCCHHHHhcC-CCCCEEEECCCc
Confidence 46899999999999999999876 4554 48899999877766542 23 367899999973 238999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEEc
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
....+.+. .. +..|. ++++-- +....+.+++.+..+++|+.+..
T Consensus 78 ~~h~~~~~-~a---l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 123 (329)
T 3evn_A 78 QDHYKVAK-AA---LLAGKHVLVEKPFTLTYDQANELFALAESCNLFLME 123 (329)
T ss_dssp GGHHHHHH-HH---HHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHH-HH---HHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 75444333 32 33444 555532 45567777888877888876543
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=80.83 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=81.9
Q ss_pred CCccCCCcEEEEccc-HHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 1 MEASALSRIGLAGLA-VMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 M~~~~~~~IgiIGlG-~mG~~lA~~La~~--G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|+.+.+.+|||||+| .||...+..|.+. +++| .++|+++++.+++.+.... ...++|+++++++ ...|+|
T Consensus 13 ~~~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~-----~~~~~~~~~ll~~-~~vD~V 86 (340)
T 1zh8_A 13 MKPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAV 86 (340)
T ss_dssp ---CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEE
T ss_pred cCCCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCC-----CcccCCHHHHhcC-CCCCEE
Confidence 444455789999999 8999999999876 4665 5889999998887765321 2678999999874 248999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
++++|+....+.+... +..|. ++++- -+....+.+++.+..++.|+.+.
T Consensus 87 ~i~tp~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 137 (340)
T 1zh8_A 87 DLTLPVELNLPFIEKA----LRKGVHVICEKPISTDVETGKKVVELSEKSEKTVY 137 (340)
T ss_dssp EECCCGGGHHHHHHHH----HHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred EEeCCchHHHHHHHHH----HHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 9999986544333332 33454 55553 23355667777777777776543
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.3e-06 Score=84.29 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=65.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||||||+|.||..++..|.+. +++|. ++|+++++.+. .+. .....+++.+. .++|+|++|+|+.
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~-----~~~~~~~l~~~----~~~DvViiatp~~ 76 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQ-----PFRVVSDIEQL----ESVDVALVCSPSR 76 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCT-----TSCEESSGGGS----SSCCEEEECSCHH
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCC-----CcCCHHHHHhC----CCCCEEEECCCch
Confidence 46899999999999999999874 67876 79999887654 211 11223444443 3499999999985
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC---ChhhHHHHHHHHHHcCCe
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL 127 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~t~~~~~~l~~~gi~ 127 (505)
... +. +...+..|..|++.... .+....++.+..++.|..
T Consensus 77 ~h~-~~---~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~ 119 (304)
T 3bio_A 77 EVE-RT---ALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAA 119 (304)
T ss_dssp HHH-HH---HHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred hhH-HH---HHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCE
Confidence 433 22 33445678888887542 334445566666666754
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=81.91 Aligned_cols=118 Identities=11% Similarity=0.118 Sum_probs=82.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++|||||+|.||..++..|.+. ++++ .++|+++++.+.+.+..... .....+.++++++++ ..+|+|++++|+.
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~--~~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 82 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPTS 82 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCGG
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC--CCCeeeCCHHHHhcC-CCCCEEEEcCChH
Confidence 46899999999999999999875 5665 58999999988776643210 013567899999863 2389999999986
Q ss_pred chHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEEc
Q 010652 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... +++. ..+..|. ++++. -+....+.+++.+..+++|+.+..
T Consensus 83 ~h~-~~~~---~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~ 127 (362)
T 1ydw_A 83 LHV-EWAI---KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMD 127 (362)
T ss_dssp GHH-HHHH---HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEE
T ss_pred HHH-HHHH---HHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 543 3333 3345566 45543 345566777788777777876653
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=82.73 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=82.3
Q ss_pred CCcEEEEccc-HHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLA-VMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG-~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+| .||..++.+|.+. +++|. ++|+++++.+++.+.. ++..+.|++++++. .++|+|++++|+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~ell~~-~~vD~V~i~tp~ 74 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY------GIPVFATLAEMMQH-VQMDAVYIASPH 74 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH------TCCEESSHHHHHHH-SCCSEEEECSCG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc------CCCeECCHHHHHcC-CCCCEEEEcCCc
Confidence 4689999999 9999999999876 56654 8899999988877653 35678999999985 348999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+... +..|+ ++++-- +....+.+++.+..+++|+.+.
T Consensus 75 ~~H~~~~~~a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 119 (387)
T 3moi_A 75 QFHCEHVVQA----SEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLV 119 (387)
T ss_dssp GGHHHHHHHH----HHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHH----HHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEE
Confidence 7554433332 33444 555532 4456777778887777777654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-05 Score=79.44 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=66.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++. +....... ...++..+++ .+.+++ +|+||++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~---aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG---SEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC---CCEEEEC
Confidence 589999999999999999999998 89999999988652 11111000 0013555556 555555 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
...+. .++++.+.+... .++.+++..||-
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNP 120 (294)
T 1oju_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (294)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCc
Confidence 85441 133444555555 577888888763
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.14 E-value=5e-06 Score=88.20 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=84.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH---HHh-CCCcchhhHHHHHHHHHhcCCCCCCC
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELAR---IWK-GGCIIRAVFLDRIKKAYQRNPNLASL 400 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~---iW~-~GciIrs~lL~~i~~~~~~~~~~~~l 400 (505)
.+.++++|+++|++.+..++.++|.+.++++. + ++.+++.+ .|+ .| ...|++++.....+.+.+.-...
T Consensus 178 ~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~----G--~~~~~~~~l~~~w~~~g-~~~s~l~~~~~~~l~~~d~~G~~ 250 (478)
T 1pgj_A 178 GGAGSCVKMYHNSGEYAILQIWGEVFDILRAM----G--LNNDEVAAVLEDWKSKN-FLKSYMLDISIAAARAKDKDGSY 250 (478)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHHHHHHTS-TTCBHHHHHHHHHHHCBCTTSSB
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHHHhccCC-CcCchHHHhhchhhhcCCCCChh
Confidence 47889999999999999999999999999843 3 66655554 477 77 67899999887777542211113
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCC
Q 010652 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRAR 448 (505)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~ 448 (505)
.+|...+...+++++ +|++..|.+.|+|+|.+.+++. +++..+++|
T Consensus 251 ~ld~i~D~~~~kgtg--~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r 298 (478)
T 1pgj_A 251 LTEHVMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTER 298 (478)
T ss_dssp GGGGBCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhcCccHH--HHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHH
Confidence 334333333345556 9999999999999999999986 566666655
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.6e-06 Score=87.02 Aligned_cols=85 Identities=26% Similarity=0.529 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHhccCC-cchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHH
Q 010652 215 LSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCR 293 (505)
Q Consensus 215 l~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r 293 (505)
++.+++.++ |+.|. +.||+++++.+++.++.. ++.+.+.+.++|+|+|++++|.+.|+|+|++++|+++|
T Consensus 260 ~d~~~i~~~---~~~g~~~~s~~l~~~~~~~~~~p~------~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~al~~~ 330 (358)
T 4e21_A 260 LDLADITEV---WRRGSVISSWLLDLSATALLDSPD------LQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSALYER 330 (358)
T ss_dssp CCHHHHHHH---HTTTSTTCBHHHHHHHHHHHHCTT------CTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHH---HhCccHHHHHHHHHHHHHHhhCCC------hHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 777777555 78886 799999999988875321 22344566678999999999999999999999999999
Q ss_pred HHcccchHHHHHHHHhc
Q 010652 294 YLSGLKEEREKAAKVLK 310 (505)
Q Consensus 294 ~~s~~~~~r~~~~~~~~ 310 (505)
+.|. .+|..+.++++
T Consensus 331 ~~s~--~~~~~~~~l~~ 345 (358)
T 4e21_A 331 FSSR--GEDDFANRLLS 345 (358)
T ss_dssp HHHT--TTTHHHHHHHH
T ss_pred HHHC--CCcccHHHHHH
Confidence 9984 34444444544
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=4.1e-06 Score=85.53 Aligned_cols=108 Identities=11% Similarity=0.148 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.||..+|+.|.+.|.+|+++|+++++++++.++.. .... +.+++.. ..+|+++.|.... .+
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~g------a~~v-~~~~ll~--~~~DIvip~a~~~-~I 243 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------ADAV-APNAIYG--VTCDIFAPCALGA-VL 243 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CEEC-CGGGTTT--CCCSEEEECSCSC-CB
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-ChHHHhc--cCCcEeeccchHH-Hh
Confidence 57999999999999999999999999999999998887766421 2222 4444443 1489999886553 22
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
.. ..++.+ ...+|++.+|.. .+..+..+.+.++|+.|+
T Consensus 244 ~~---~~~~~l-g~~iV~e~An~p-~t~~ea~~~L~~~Gi~~~ 281 (364)
T 1leh_A 244 ND---FTIPQL-KAKVIAGSADNQ-LKDPRHGKYLHELGIVYA 281 (364)
T ss_dssp ST---THHHHC-CCSEECCSCSCC-BSSHHHHHHHHHHTCEEC
T ss_pred CH---HHHHhC-CCcEEEeCCCCC-cccHHHHHHHHhCCCEEe
Confidence 21 123334 346677666654 444456677888888665
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=84.76 Aligned_cols=119 Identities=10% Similarity=0.043 Sum_probs=81.6
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQ-NLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~-~lA~~La~~-G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|||||+|.||. .++..|.+. +++| .++|+++++.+++.+..... ..++..+.+++++++. .++|+|++++|+
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~~~ll~~-~~vD~V~iatp~ 160 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD-PKIDAVYIILPN 160 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC-TTCCEEEECSCG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC-cccccccCCHHHHhcC-CCCCEEEEcCCc
Confidence 45899999999997 899999875 5665 58999999988776642110 0012357889998873 238999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEEc
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
....+.+.. . +..|. ++++. .+....+.+++.+..+++|+.+..
T Consensus 161 ~~h~~~~~~-a---l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v 206 (433)
T 1h6d_A 161 SLHAEFAIR-A---FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMI 206 (433)
T ss_dssp GGHHHHHHH-H---HHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHHH-H---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEE
Confidence 754443333 2 33455 66653 344567777788877777776553
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.10 E-value=2e-05 Score=80.46 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=77.3
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.+|||||+|.||.. .+..+.+. +++|. ++|+++++..+ ... ....+.+++++++. .+.|+|++|+|+
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~---~~~-----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 77 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR---DLP-----DVTVIASPEAAVQH-PDVDLVVIASPN 77 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH---HCT-----TSEEESCHHHHHTC-TTCSEEEECSCG
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh---hCC-----CCcEECCHHHHhcC-CCCCEEEEeCCh
Confidence 458999999999997 66667665 67765 88999987542 111 35778999999983 238999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCC--CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+.. .+..|+-|+.-- +....+.+++.+..+++|+.+.
T Consensus 78 ~~H~~~~~~----al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (364)
T 3e82_A 78 ATHAPLARL----ALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS 122 (364)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH----HHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 765444333 334455444433 4456777778887777777554
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-05 Score=79.08 Aligned_cols=114 Identities=13% Similarity=0.187 Sum_probs=79.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+||||||+|.||.. ++..+.+. +.+|+ ++|+++++.+++.++... ...++|+++++++ ...|+|++++|+
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~I~tP~ 96 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSV-----PHAFGSYEEMLAS-DVIDAVYIPLPT 96 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-SSCSEEEECSCG
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCC-----CeeeCCHHHHhcC-CCCCEEEEeCCC
Confidence 469999999999986 45666665 56765 789999999888775421 1568999999975 347999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.++..+. .|+ +++.- =+....+.+++.+..++.|+.+.
T Consensus 97 ~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 141 (350)
T 4had_A 97 SQHIEWSIKAAD----AGKHVVCEKPLALKAGDIDAVIAARDRNKVVVT 141 (350)
T ss_dssp GGHHHHHHHHHH----TTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEE
T ss_pred chhHHHHHHHHh----cCCEEEEeCCcccchhhHHHHHHHHHHcCCcee
Confidence 765554444333 343 55542 12345677788777777776543
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-06 Score=83.69 Aligned_cols=115 Identities=17% Similarity=0.033 Sum_probs=79.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++.|+|+|-||++++..|++.|. +|+++||++++.+++.+.....+ ++.. .+++++.. .+|+||.++|.+.
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~--~~~~-~~~~~l~~---~aDiIInaTp~gm 199 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG--EVKA-QAFEQLKQ---SYDVIINSTSASL 199 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS--CEEE-EEGGGCCS---CEEEEEECSCCCC
T ss_pred CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC--CeeE-eeHHHhcC---CCCEEEEcCcCCC
Confidence 3579999999999999999999996 89999999999888876543211 1222 24455433 4899999999985
Q ss_pred hHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe-EEc
Q 010652 85 PVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL-YLG 130 (505)
Q Consensus 85 ~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~-~v~ 130 (505)
..+.. +. ...+.++.+|+|.... |..|. ..+..+++|.. .++
T Consensus 200 ~~~~~~l~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~ 243 (281)
T 3o8q_A 200 DGELPAID--PVIFSSRSVCYDMMYG-KGYTV-FNQWARQHGCAQAID 243 (281)
T ss_dssp ----CSCC--GGGEEEEEEEEESCCC-SSCCH-HHHHHHHTTCSEEEC
T ss_pred CCCCCCCC--HHHhCcCCEEEEecCC-CccCH-HHHHHHHCCCCEEEC
Confidence 32211 10 1246678999999876 44554 44566777775 443
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=83.60 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=83.1
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~--G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++|||||+ |.||...+..|.+. +++| .++|+++++.+++.+..... ....+.+++++++. ...|+|++|
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~---~~~~~~d~~ell~~-~~vD~V~I~ 115 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVVS 115 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEEC
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEc
Confidence 58999999 99999999999986 6775 48999999988877653110 12478999999873 238999999
Q ss_pred cCCCchHHHHHHHHhhccCCC-------CEEEeC-CCCChhhHHHHHHHHHHcC-CeE
Q 010652 80 VKAGSPVDQTIAALSEHMSPG-------DCIIDG-GNEWYLNTERRIHEASQKG-LLY 128 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g-------~iiId~-st~~~~~t~~~~~~l~~~g-i~~ 128 (505)
+|+....+.++..+ ..| .++++. -+....+.+++.+..+++| +.+
T Consensus 116 tp~~~H~~~~~~al----~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 169 (479)
T 2nvw_A 116 VKVPEHYEVVKNIL----EHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT 169 (479)
T ss_dssp SCHHHHHHHHHHHH----HHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred CCcHHHHHHHHHHH----HCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 99865544443333 334 477775 4455677788888777777 654
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.08 E-value=7.3e-06 Score=83.01 Aligned_cols=113 Identities=11% Similarity=0.141 Sum_probs=76.4
Q ss_pred CCcEEEEcccHHHHHHHHH-H-Hh-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALN-V-AE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~-L-a~-~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++||||||+|.||..+... + .. .+++|. ++|+++++.+...+.. ++..++|++++++. .++|+|++|+|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 74 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS------HIHFTSDLDEVLND-PDVKLVVVCTH 74 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGT------TCEEESCTHHHHTC-TTEEEEEECSC
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcC------CCceECCHHHHhcC-CCCCEEEEcCC
Confidence 4689999999999975444 4 32 367776 8999988753222211 35778999999874 34799999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCC--CCChhhHHHHHHHHHHcCCeEE
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~t~~~~~~l~~~gi~~v 129 (505)
+....+.+.. .+..|..|+.-- +....+.+++.+..+++|+.+.
T Consensus 75 ~~~h~~~~~~----al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 75 ADSHFEYAKR----ALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp GGGHHHHHHH----HHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHH----HHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 9765444333 234565555432 4456777788887777777654
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.2e-05 Score=78.52 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=79.1
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.+|||||+|.||.. .+..+.+. +++|. ++|+++++.+ +.. . ....+++++++++. .+.|+|++|+|+
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~--~---~~~~~~~~~~ll~~-~~vD~V~i~tp~ 77 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADW--P---AIPVVSDPQMLFND-PSIDLIVIPTPN 77 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTC--S---SCCEESCHHHHHHC-SSCCEEEECSCT
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhC--C---CCceECCHHHHhcC-CCCCEEEEeCCh
Confidence 358999999999997 77777765 67765 8899998765 211 1 35678999999975 348999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+... +..|+ ++++.- +....+.+++.+..+++|+.+.
T Consensus 78 ~~H~~~~~~a----l~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (352)
T 3kux_A 78 DTHFPLAQSA----LAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352)
T ss_dssp TTHHHHHHHH----HHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 7655444333 33454 666644 4566777788887777777554
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=2.2e-05 Score=78.78 Aligned_cols=99 Identities=9% Similarity=0.039 Sum_probs=61.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc--CCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE--GQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~--g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++||+|||+|.+|.+++..|+.+|+ +|.++|+++++++......... -..+++...+..+. ++.+|+||++++
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a---~~~aDvVii~~g 83 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD---VKDCDVIVVTAG 83 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG---GTTCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHH---hCCCCEEEEcCC
Confidence 4799999999999999999999998 8999999987654322111100 00022222222333 445999999997
Q ss_pred CCch---------------HHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGSP---------------VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~---------------v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.. ++++.+.+.++ .++.+|+..||
T Consensus 84 ~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 124 (318)
T 1y6j_A 84 ANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSN 124 (318)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSS
T ss_pred CCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence 6531 45555667666 46777777655
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3e-05 Score=77.92 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=67.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH----HHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDE----TLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~----~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++||+|||+|.||.++|..|+.+|+ +|.+||+++++++. +....... ...++..+.+. +.+++ +|+||++
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~---aDiVIia 82 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEG---ADVVIVT 82 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCC---CCEEEEc
Confidence 4699999999999999999999999 99999999987642 22211000 00145555666 44444 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
...+. .++++.+.+.... ++.+++..||-.
T Consensus 83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPv 127 (324)
T 3gvi_A 83 AGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPL 127 (324)
T ss_dssp CSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred cCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCc
Confidence 75431 2344445555554 777888888744
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=81.42 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh------HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS------KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~------~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
++|+|||.|.-|.+-|+||.+.|.+|++--|... ..+.+.+.| +.+ .+++|+++. +|+|++.+
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~G-------f~v-~~~~eA~~~---ADvV~~L~ 106 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FKV-GTYEELIPQ---ADLVINLT 106 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTT-------CEE-EEHHHHGGG---CSEEEECS
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCC-------CEe-cCHHHHHHh---CCEEEEeC
Confidence 5899999999999999999999999999887432 223333332 343 478999887 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~ 106 (505)
|+. .-..+.+.+.|.|++|+.+.-.
T Consensus 107 PD~-~q~~vy~~I~p~lk~G~~L~fa 131 (491)
T 3ulk_A 107 PDK-QHSDVVRTVQPLMKDGAALGYS 131 (491)
T ss_dssp CGG-GHHHHHHHHGGGSCTTCEEEES
T ss_pred Chh-hHHHHHHHHHhhCCCCCEEEec
Confidence 995 4556778899999999988754
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-05 Score=84.11 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.||..+|+.+...|.+|+++|+++.+.+...+.+ +. ..++++++.. +|+|+.+++....+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G-------a~-~~~l~e~l~~---aDvVi~atgt~~~i 343 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG-------FD-VVTVEEAIGD---ADIVVTATGNKDII 343 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CE-EecHHHHHhC---CCEEEECCCCHHHH
Confidence 5799999999999999999999999999999999877665543 23 3577887766 99999999876433
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
. .+....+++|.+|++.+....
T Consensus 344 ~---~~~l~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 344 M---LEHIKAMKDHAILGNIGHFDN 365 (494)
T ss_dssp C---HHHHHHSCTTCEEEECSSSGG
T ss_pred H---HHHHHhcCCCcEEEEeCCCCC
Confidence 2 245666889999999988654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-05 Score=83.28 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=83.8
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~--G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++|||||+ |.||...+..|.+. +++| .++|+++++.+++.+..... ....+.+++++++. ...|+|+++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~---~~~~~~~~~~ll~~-~~vD~V~i~ 96 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLS---NATAFPTLESFASS-STIDMIVIA 96 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCT---TCEEESSHHHHHHC-SSCSEEEEC
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEe
Confidence 58999999 99999999999987 6775 58999999988877652110 13478899999873 238999999
Q ss_pred cCCCchHHHHHHHHhhcc---CCCCEEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 80 VKAGSPVDQTIAALSEHM---SPGDCIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l---~~g~iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+|+....+.++..+.... +.-.++++. -+....+.+++.+..+++|+.+.
T Consensus 97 tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 150 (438)
T 3btv_A 97 IQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTI 150 (438)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred CCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 998655444433333220 002577774 44566778888887777776554
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.9e-06 Score=82.35 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=76.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+++.|+|+|.||++++..|++.|.+|+++||++++.+++.+.....+ .+.. .+++++.+ ..+|+||.++|.+..
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~--~~~~-~~~~~~~~--~~~DivIn~t~~~~~ 193 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQA-VSMDSIPL--QTYDLVINATSAGLS 193 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEE-EEGGGCCC--SCCSEEEECCCC---
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccC--CeEE-eeHHHhcc--CCCCEEEECCCCCCC
Confidence 357999999999999999999999999999999999888875432110 1222 23333322 249999999998743
Q ss_pred HHHHHHHHh-hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe-EEc
Q 010652 86 VDQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL-YLG 130 (505)
Q Consensus 86 v~~vl~~l~-~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~-~v~ 130 (505)
. .+. .+. ..+.++.+++|.+.....+|. ..+..+++|.. +++
T Consensus 194 ~-~~~-~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 194 G-GTA-SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp ------CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred C-CCC-CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 2 111 010 123468899999986544254 44556777876 654
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.02 E-value=3.9e-05 Score=80.96 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=54.0
Q ss_pred CCcEEEEcccHH--HHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhc----cc-CCCCeeeeCCHHHHHhhcCCCc
Q 010652 6 LSRIGLAGLAVM--GQNLALNVAEK----GFPISVYNRTTSKVDETLDRAH----RE-GQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgiIGlG~m--G~~lA~~La~~----G~~V~v~dr~~~~~~~~~~~~~----~~-g~~~i~~~~s~~e~v~~l~~ad 74 (505)
++||+|||+|.| |.++|..|+.. |++|.+||+++++++....... .. ...+++.++++++.+++ ||
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d---AD 79 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 79 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC---CC
Confidence 469999999997 56667788754 8999999999988665432110 00 01257777888777776 99
Q ss_pred EEEEecCC
Q 010652 75 SVIILVKA 82 (505)
Q Consensus 75 vIil~vp~ 82 (505)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999975
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.4e-05 Score=77.29 Aligned_cols=113 Identities=18% Similarity=0.156 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHHHHHHHHh--------CCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAE--------KGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~--------~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
-||||||+|.||..-+..+.. .+.+| .++|+++++.+++.++... ...++|.++++++ .+.|+|+
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~ 99 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF-----EKATADWRALIAD-PEVDVVS 99 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC-----SEEESCHHHHHHC-TTCCEEE
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC-----CeecCCHHHHhcC-CCCcEEE
Confidence 479999999999988777654 24564 5889999999888775421 2578999999975 3479999
Q ss_pred EecCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+|+|+....+.++..+. .|. +++.- -+....+.+++.+..++.|+.+.
T Consensus 100 IatP~~~H~~~a~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 149 (393)
T 4fb5_A 100 VTTPNQFHAEMAIAALE----AGKHVWCEKPMAPAYADAERMLATAERSGKVAA 149 (393)
T ss_dssp ECSCGGGHHHHHHHHHH----TTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEE
T ss_pred ECCChHHHHHHHHHHHh----cCCeEEEccCCcccHHHHHHhhhhHHhcCCccc
Confidence 99999766555444433 343 55552 13345667777777777776543
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-05 Score=81.49 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=56.8
Q ss_pred CCcEEEEcccHH--HHHHHHHHHh----CCCcEEEEeCChhHHHHHHHhhcc--cCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 6 LSRIGLAGLAVM--GQNLALNVAE----KGFPISVYNRTTSKVDETLDRAHR--EGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgiIGlG~m--G~~lA~~La~----~G~~V~v~dr~~~~~~~~~~~~~~--~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
.+||+|||.|.| |.+++..|+. .| +|.+||+++++++........ ....+++.++++++++++ +|+||
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~d---ADfVI 80 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSA---ADIVI 80 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTT---CSEEE
T ss_pred CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcC---CCEEE
Confidence 469999999997 6899988886 57 999999999887655432210 001157788999998887 99999
Q ss_pred EecCCC
Q 010652 78 ILVKAG 83 (505)
Q Consensus 78 l~vp~~ 83 (505)
++++.+
T Consensus 81 ~airvG 86 (450)
T 3fef_A 81 ISILPG 86 (450)
T ss_dssp ECCCSS
T ss_pred eccccC
Confidence 999865
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=78.93 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhH---HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSK---VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~---~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
++||+|||+|.||..+|..++.+|+ +|.++|++++. ..++..... . +++.+.++++ ++ .+|+||+++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~-~---~i~~t~d~~~-l~---~aD~Vi~aa 85 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL-P---NVEISKDLSA-SA---HSKVVIFTV 85 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC-T---TEEEESCGGG-GT---TCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC-C---CeEEeCCHHH-HC---CCCEEEEcC
Confidence 4689999999999999999999999 99999999852 223332111 1 4666667643 34 399999997
Q ss_pred CCCc--------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
..+. .++++++.+.... ++.+++..||-.
T Consensus 86 g~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~ 128 (303)
T 2i6t_A 86 NSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPV 128 (303)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChH
Confidence 3321 2445556666665 777888888843
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.3e-05 Score=80.07 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=80.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC---------CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK---------GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~---------G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
.||||||+|.||...+..+.+. +.+| .++|+++++.+++.++... ...++|.++++++ .+.|+|
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~-----~~~y~d~~~ll~~-~~vD~V 100 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA-----EKAYGDWRELVND-PQVDVV 100 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC-----CeEECCHHHHhcC-CCCCEE
Confidence 5899999999999999888764 3454 4789999999888775421 2578999999975 347999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
++++|+....+.++..+. .|+ +++.- -+....+.+++.+..+++|+.+.
T Consensus 101 ~I~tp~~~H~~~~~~al~----aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 151 (412)
T 4gqa_A 101 DITSPNHLHYTMAMAAIA----AGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTM 151 (412)
T ss_dssp EECSCGGGHHHHHHHHHH----TTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred EECCCcHHHHHHHHHHHH----cCCCeEeecCCcCCHHHHHHHHHHHHHhCCeee
Confidence 999999765554444433 344 55553 13345677777777777776543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.99 E-value=6e-05 Score=66.81 Aligned_cols=101 Identities=13% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHhhcccCCCCe-eee-CCHHHHHh-hcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPL-TGH-YTPRDFVL-SIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~-~~~~~~~~~~~~~~g~~~i-~~~-~s~~e~v~-~l~~advIil~vp 81 (505)
..+|.|+|+|.+|..++..|.+.|++|++.|++ +++.+.+...... | ..+ ... .+++.+.+ .++++|.|+++++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~-~-~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-N-ADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-T-CEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcC-C-CeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence 457999999999999999999999999999998 4655555432110 0 011 111 23333322 3667999999998
Q ss_pred CCchHHHHHHHHhhcc-CCCCEEEeCCCC
Q 010652 82 AGSPVDQTIAALSEHM-SPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l-~~g~iiId~st~ 109 (505)
++ .....+..++..+ +...+++...+.
T Consensus 81 ~d-~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 81 ND-ADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp CH-HHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred Ch-HHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 85 4444444444444 445677666543
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.2e-05 Score=80.25 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=81.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeC----CHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHY----TPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~----s~~e~v~~l~~advIil~ 79 (505)
+++|||||+|.||...+..|.+. |++| .++|+++++.+++.+.....|.-....++ +++++++. .+.|+|+++
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~-~~vD~V~i~ 98 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD-KNIDAVFVS 98 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC-TTCCEEEEC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC-CCCCEEEEc
Confidence 35899999999999999999875 6775 58899999988776531110000135667 99999874 238999999
Q ss_pred cCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 80 VKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+|+....+.++.. +..|+ ++++- -+....+.+++.+..++.|+.+.
T Consensus 99 tp~~~h~~~~~~a----l~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 99 SPWEWHHEHGVAA----MKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp CCGGGHHHHHHHH----HHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred CCcHHHHHHHHHH----HHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 9987654444333 33455 55553 23456677777777777776543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.1e-05 Score=75.61 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc----c-CCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR----E-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~----~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++||+|||+|.||.++|..|+.+|+ +|.++|+++++++.......+ . ...++..+.+.+ .+++ +|+||++
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~-a~~~---aDvVIi~ 80 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYK-DLEN---SDVVIVT 80 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHH-HHCC---CCEEEEc
Confidence 4799999999999999999999998 999999999876532211100 0 001345455543 3343 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
...+. .++++.+.+.... ++.+++..||-.
T Consensus 81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 125 (321)
T 3p7m_A 81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPL 125 (321)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCch
Confidence 75431 2344445666655 667777776643
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.7e-05 Score=75.08 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC--hhHHHHH----HHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT--TSKVDET----LDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~--~~~~~~~----~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
.+||+|||+|.||.++|..|+.+|+ +|.++|++ +++.+.. ....... ...++..+.+.+++ + .+|+||
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~-~---~aDvVI 83 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADT-A---DSDVVV 83 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGG-T---TCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHh-C---CCCEEE
Confidence 3589999999999999999999999 99999999 4443322 1111000 00145555565433 3 399999
Q ss_pred EecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++...+. .++++.+.+..+ .++.+++..||-.
T Consensus 84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPv 130 (315)
T 3tl2_A 84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPV 130 (315)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSH
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChH
Confidence 9984431 233444555555 4677888888743
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.97 E-value=4.1e-05 Score=77.93 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=76.5
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.+|||||+|.||.. .+..+.+. +++|. ++|+++++.. +... ....++++++++++ ...|+|++|+|+
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 75 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK---RDFP-----DAEVVHELEEITND-PAIELVIVTTPS 75 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH---HHCT-----TSEEESSTHHHHTC-TTCCEEEECSCT
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---hhCC-----CCceECCHHHHhcC-CCCCEEEEcCCc
Confidence 368999999999997 67777665 67764 7899987632 2211 25678999999984 238999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+... +..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 76 ~~H~~~~~~a----l~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 76 GLHYEHTMAC----IQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp TTHHHHHHHH----HHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHH----HHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 7655444333 33454 555532 4456777778877777776553
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3e-05 Score=78.57 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQ-NLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~-~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||. ..+..+.+. +++|. ++|++ +.+++.+..... ++..+.+++++++. .+.|+|++++|+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~---~~~~~~~~~~ll~~-~~~D~V~i~tp~ 75 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEK---GVNFTADLNELLTD-PEIELITICTPA 75 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTT---TCEEESCTHHHHSC-TTCCEEEECSCG
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCC---CCeEECCHHHHhcC-CCCCEEEEeCCc
Confidence 46999999999999 456666654 67765 88988 334444331111 35778999999974 347999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+... +..|+ ++++-- +....+.+++.+..+++|+.+.
T Consensus 76 ~~h~~~~~~a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 76 HTHYDLAKQA----ILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp GGHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 7554433333 33454 555532 3456677778777777777654
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.95 E-value=4.5e-05 Score=80.41 Aligned_cols=108 Identities=13% Similarity=0.181 Sum_probs=73.6
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHHhhc----c-cCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLDRAH----R-EGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~-----G~~V~v~dr~~~~~~~~~~~~~----~-~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||+|.+ |.++|..|+.+ +.+|.+||+++++++....... . ....++..++++++.+++ +|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~---AD~ 105 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VDF 105 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC---CCE
Confidence 48999999998 66688888887 6789999999988665332110 0 001246777888777776 999
Q ss_pred EEEecCCCc-----------------------------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHH
Q 010652 76 VIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRI 118 (505)
Q Consensus 76 Iil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~ 118 (505)
||+++|.+. .+.++++.+... .|+.++|..||-..-.|....
T Consensus 106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPvdi~T~~~~ 182 (472)
T 1u8x_X 106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEATR 182 (472)
T ss_dssp EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHHH
T ss_pred EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHHH
Confidence 999998852 133444555554 477888888876544443333
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.7e-05 Score=76.99 Aligned_cols=113 Identities=11% Similarity=0.090 Sum_probs=79.4
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQ-NLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~-~lA~~La~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+.+|||||+|.+|. .++..+...+++|. ++|+++++.+++.++.. ....+++++++++. .+.|+|++++|+.
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~I~tp~~ 99 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA-----DARRIATAEEILED-ENIGLIVSAAVSS 99 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS-----SCCEESCHHHHHTC-TTCCEEEECCCHH
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC-----CCcccCCHHHHhcC-CCCCEEEEeCChH
Confidence 35899999999995 57777777888854 88999999888876532 14578999999975 3479999999986
Q ss_pred chHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeE
Q 010652 84 SPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+.+... +..|+ ++++-= +....+.+++.+..+++|+.+
T Consensus 100 ~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 142 (361)
T 3u3x_A 100 ERAELAIRA----MQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIF 142 (361)
T ss_dssp HHHHHHHHH----HHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 544333332 33444 555532 344567777777777766644
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.3e-05 Score=82.46 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-ee---eCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TG---HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~---~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|+|+|.+|..++..+...|.+|+++|+++++.+.+.+.... .+ .. ..++++++.. +|+||.+++.
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~----~~~~~~~~~~~l~~~l~~---aDvVi~~~~~ 241 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG----RIHTRYSSAYELEGAVKR---ADLVIGAVLV 241 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SSEEEECCHHHHHHHHHH---CSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC----eeEeccCCHHHHHHHHcC---CCEEEECCCc
Confidence 579999999999999999999999999999999988776653211 11 11 2244555555 9999998854
Q ss_pred Cch-HHHH-HHHHhhccCCCCEEEeCC
Q 010652 83 GSP-VDQT-IAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 83 ~~~-v~~v-l~~l~~~l~~g~iiId~s 107 (505)
+.. ...+ .++..+.+++|.+|||.+
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 321 1111 245667788999999987
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.9e-05 Score=79.01 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=75.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
.++|.|+|+|.+|..++..|.+.|++|++.|+++++++.+.+.+.. -+....+-.++++ .++++|+||++++++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~----vi~GDat~~~~L~~agi~~A~~viv~~~~~ 79 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDP 79 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCC----CEESCTTCHHHHHHTTTTTCSEEEECCSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCe----EEEcCCCCHHHHHhcCCCccCEEEECCCCh
Confidence 4689999999999999999999999999999999999988765432 1222333344443 356799999999986
Q ss_pred chHHHHHHHHhhccCCC-CEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 84 SPVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
.....+ -..+..+.+. .||+-..+ + .....+...|+..+
T Consensus 80 ~~n~~i-~~~ar~~~p~~~Iiara~~--~----~~~~~L~~~Gad~V 119 (413)
T 3l9w_A 80 QTNLQL-TEMVKEHFPHLQIIARARD--V----DHYIRLRQAGVEKP 119 (413)
T ss_dssp HHHHHH-HHHHHHHCTTCEEEEEESS--H----HHHHHHHHTTCSSC
T ss_pred HHHHHH-HHHHHHhCCCCeEEEEECC--H----HHHHHHHHCCCCEE
Confidence 433333 3344445555 45544332 1 23344555676544
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=82.90 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=77.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~--G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+.||||||+| +|...+..+++. ++++. ++|+++++.+++.++. ++..++|+++++++ +|++++++|
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~------gv~~~~~~~~l~~~---~D~v~i~~p 75 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF------GIPLYTSPEQITGM---PDIACIVVR 75 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT------TCCEESSGGGCCSC---CSEEEECCC
T ss_pred CCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh------CCCEECCHHHHhcC---CCEEEEECC
Confidence 34689999999 899888888765 57765 7899999998887653 46778999999876 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+......-.+-....|..|.-|+--=-....+.+++.+..+++|+.|.
T Consensus 76 ~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~ 123 (372)
T 4gmf_A 76 STVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYW 123 (372)
T ss_dssp --CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEE
T ss_pred CcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEE
Confidence 864311111112223334554433333456677777777777787664
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.93 E-value=7e-05 Score=77.91 Aligned_cols=116 Identities=12% Similarity=0.162 Sum_probs=80.3
Q ss_pred CcEEEEcccH---HHHHHHHHHHhCC-CcEE--EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhc----CCCcEE
Q 010652 7 SRIGLAGLAV---MGQNLALNVAEKG-FPIS--VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI----QRPRSV 76 (505)
Q Consensus 7 ~~IgiIGlG~---mG~~lA~~La~~G-~~V~--v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l----~~advI 76 (505)
.+|||||+|. ||...+..+...+ ++|. ++|+++++.+++.++.... ....+++++++++.- ...|+|
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLD---PSRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCC---GGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCC---cccccCCHHHHHhcccccCCCCcEE
Confidence 4799999999 9999998888776 6764 6799999988877653210 014678999998741 348999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
++++|+....+.+.. .+..|+ ++++-- +....+.+++.+..+++|+.+.
T Consensus 115 ~I~tp~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 165 (417)
T 3v5n_A 115 AIVTPNHVHYAAAKE----FLKRGIHVICDKPLTSTLADAKKLKKAADESDALFV 165 (417)
T ss_dssp EECSCTTSHHHHHHH----HHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEE
T ss_pred EECCCcHHHHHHHHH----HHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 999999765443332 344554 555532 3455677778887777776543
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.92 E-value=5.5e-05 Score=73.99 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=76.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|+|+|.||.+++..|++.|.+|+++||++++.+++.+.....+ .+.. .+.+++.+ ..+|+||.++|.+..
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~--~~~~-~~~~~~~~--~~~DivVn~t~~~~~- 193 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQA-LSMDELEG--HEFDLIINATSSGIS- 193 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEE-CCSGGGTT--CCCSEEEECCSCGGG-
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccC--CeeE-ecHHHhcc--CCCCEEEECCCCCCC-
Confidence 57999999999999999999999999999999999888775422110 1222 23333331 359999999987643
Q ss_pred HHHHHHHh-hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 DQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl~~l~-~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
..+ ..+. ..+.++.+++|.+.. |..|. ..+..+++|..
T Consensus 194 ~~~-~~i~~~~l~~~~~v~D~~y~-p~~t~-~~~~a~~~G~~ 232 (271)
T 1nyt_A 194 GDI-PAIPSSLIHPGIYCYDMFYQ-KGKTP-FLAWCEQRGSK 232 (271)
T ss_dssp TCC-CCCCGGGCCTTCEEEESCCC-SSCCH-HHHHHHHTTCC
T ss_pred CCC-CCCCHHHcCCCCEEEEeccC-CcCCH-HHHHHHHcCCC
Confidence 111 0111 235688999999886 44443 44556677765
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.1e-05 Score=75.74 Aligned_cols=99 Identities=13% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++. +.......+ .++....+..+.+++ +|+||++
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~-~~v~i~~~~~~a~~~---aDvVvi~ 80 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAP-QPVKTSYGTYEDCKD---ADIVCIC 80 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSS-SCCEEEEECGGGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccccc-CCeEEEeCcHHHhCC---CCEEEEe
Confidence 4699999999999999999999997 89999999988765 332211000 022333333333444 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+..+. .++++.+.+... .++.+++..||-
T Consensus 81 ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNP 124 (326)
T 3pqe_A 81 AGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNP 124 (326)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred cccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCCh
Confidence 85431 123333455554 467788888774
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.91 E-value=7.7e-06 Score=80.23 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=77.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||+|-||++++..|++.|. +|+++||++++.+++.+... .....++. +..+|+||.++|.+..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~------~~~~~~~~-----~~~~DivInaTp~gm~ 188 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE-----NQQADILVNVTSIGMK 188 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT-----TCCCSEEEECSSTTCT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC------Cccchhhh-----cccCCEEEECCCCCcc
Confidence 579999999999999999999997 79999999999888876421 12222222 2349999999998742
Q ss_pred HH---HHHHHH-hhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 VD---QTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~---~vl~~l-~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.. +.. .+ ...+.++.+++|.... |..| .+.+..+++|..+++
T Consensus 189 ~~~~~~~~-~~~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~i~ 234 (271)
T 1npy_A 189 GGKEEMDL-AFPKAFIDNASVAFDVVAM-PVET-PFIRYAQARGKQTIS 234 (271)
T ss_dssp TSTTTTSC-SSCHHHHHHCSEEEECCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CccccCCC-CCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCCCEEEC
Confidence 11 000 00 0123468899999874 4555 566667788887765
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=7e-05 Score=75.23 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=69.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHH----HhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETL----DRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~----~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||.++|..|+.+|+ +|.++|+++++++... .........++..+.++++ ++ .+|+||++
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~---daDiVIit 96 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SA---GSKLVVIT 96 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CS---SCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hC---CCCEEEEe
Confidence 4799999999999999999999997 8999999998765432 1111000013556667765 33 49999998
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
...+. .++++.+.+.+. .++.+++..||-.
T Consensus 97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPv 141 (330)
T 3ldh_A 97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELG 141 (330)
T ss_dssp CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCcc
Confidence 74431 245555677776 5778888888743
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.5e-05 Score=79.69 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..+...|.+|.++|+++.+.......+ +. ..++++++.. +|+|++|..+.
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G-------~~-v~~Leeal~~---ADIVi~atgt~--- 286 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDG-------FR-LVKLNEVIRQ---VDIVITCTGNK--- 286 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCS---
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcC-------CE-eccHHHHHhc---CCEEEECCCCc---
Confidence 5799999999999999999999999999999997655444332 22 3578888876 99999973222
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~ 111 (505)
.++ .+....+++|.+||+.+....
T Consensus 287 -~lI~~e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 287 -NVVTREHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp -CSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred -ccCCHHHHHhcCCCcEEEEecCCCc
Confidence 234 356677889999999988754
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.8e-05 Score=79.64 Aligned_cols=90 Identities=13% Similarity=0.009 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++++|||+|.+|+.+|+.+...|.+|+++|+++.+..+....+ +. ..++++++.. +|+|+++..+..
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G-------~~-vv~LeElL~~---ADIVv~atgt~~-- 314 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDG-------FE-VVTLDDAAST---ADIVVTTTGNKD-- 314 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECCSSSS--
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcC-------ce-eccHHHHHhh---CCEEEECCCCcc--
Confidence 5799999999999999999999999999999987654443332 23 3578998887 999998865432
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~ 111 (505)
++ .+....+++|.+||+++....
T Consensus 315 --lI~~e~l~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 315 --VITIDHMRKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp --SBCHHHHHHSCTTEEEEECSSSTT
T ss_pred --ccCHHHHhcCCCCeEEEEcCCCCc
Confidence 33 456677899999999987653
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.3e-05 Score=73.83 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=66.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-----~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
||+|||+|.||.+++..++.+|+ +|.++|+++++++........ ....+++.+.+.+ .+++ +|+||++.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~-a~~~---aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYE-DMRG---SDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGG-GGTT---CSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHH-HhCC---CCEEEEeCC
Confidence 69999999999999999998888 699999998876542211100 0011456556663 3344 999999976
Q ss_pred CCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+. .++++++.+.+.. ++.++|..||-
T Consensus 77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 118 (308)
T 2d4a_B 77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNP 118 (308)
T ss_dssp CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 653 1555666776664 66677777773
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=9.5e-05 Score=74.11 Aligned_cols=101 Identities=11% Similarity=0.091 Sum_probs=64.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc--CCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE--GQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~--g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||+|||+|.+|.+++..|+.++. +|.++|+++++++......... -..+++...+..+.+++ +|+||++.+
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~---aDvVii~ag 81 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKD---ADLVVITAG 81 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTT---CSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEECCC
Confidence 4699999999999999999998887 8999999998776432211100 00022233333443444 999999986
Q ss_pred CCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.+. .++++.+.+..+ .++.+++..||-.
T Consensus 82 ~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 124 (318)
T 1ez4_A 82 APQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPV 124 (318)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcH
Confidence 542 233444555555 4667777776643
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.8e-05 Score=73.94 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=62.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+||+|+|+|.||+.++..+.+.++++. ++|++++. .. ++..+++++++. . +|+||-+.++ .
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~-------gv~v~~dl~~l~-~---~DVvIDft~p-~ 65 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TT-------PYQQYQHIADVK-G---ADVAIDFSNP-N 65 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------C-------CSCBCSCTTTCT-T---CSEEEECSCH-H
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cC-------CCceeCCHHHHh-C---CCEEEEeCCh-H
Confidence 5799999999999999999999877755 57988762 11 356678888876 4 9999865543 2
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t 114 (505)
.+...+ . +..|.-+|.++|+.....
T Consensus 66 a~~~~~----~-l~~g~~vVigTTG~s~e~ 90 (243)
T 3qy9_A 66 LLFPLL----D-EDFHLPLVVATTGEKEKL 90 (243)
T ss_dssp HHHHHH----T-SCCCCCEEECCCSSHHHH
T ss_pred HHHHHH----H-HhcCCceEeCCCCCCHHH
Confidence 333333 2 777887777888764433
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-05 Score=79.37 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=66.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~vp~ 82 (505)
++|+|+|+|.+|..++..+...|++|+++||++++.+.+.+.... .+.. ..++++++.. +|+||.+++.
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~l~~~~~~---~DvVi~~~g~ 239 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG----RVITLTATEANIKKSVQH---ADLLIGAVLV 239 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SEEEEECCHHHHHHHHHH---CSEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc----eEEEecCCHHHHHHHHhC---CCEEEECCCC
Confidence 689999999999999999999999999999999988776543211 1111 1234455555 9999999976
Q ss_pred Cc-hHHHH-HHHHhhccCCCCEEEeCCC
Q 010652 83 GS-PVDQT-IAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~-~v~~v-l~~l~~~l~~g~iiId~st 108 (505)
+. ....+ .+...+.+.+|.+|||.+.
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEECC-
T ss_pred CccccchhHHHHHHHhhcCCCEEEEEec
Confidence 42 11111 2556677888999999884
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.4e-05 Score=74.86 Aligned_cols=112 Identities=18% Similarity=0.094 Sum_probs=77.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecC
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp 81 (505)
...||+|+|+ |.||..+++++.+.|++ .++..+|.+.. ++ . +++..+.|++|+.+ . +|++++++|
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g---~~--~---~G~~vy~sl~el~~~~~---~D~viI~tP 73 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGG---TT--H---LGLPVFNTVREAVAATG---ATASVIYVP 73 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--E---TTEEEESSHHHHHHHHC---CCEEEECCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccc---ce--e---CCeeccCCHHHHhhcCC---CCEEEEecC
Confidence 3568999998 99999999999999998 44555554210 01 1 14678899999987 5 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC-hhhHHHHHHHHHHcCCeEEcC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+. .+.+++++....- . ..+|..+... ..+.+++.+..++.|+.+++.
T Consensus 74 ~~-~~~~~~~ea~~~G-i-~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGP 121 (288)
T 2nu8_A 74 AP-FCKDSILEAIDAG-I-KLIITITEGIPTLDMLTVKVKLDEAGVRMIGP 121 (288)
T ss_dssp GG-GHHHHHHHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHHHHTCEEECS
T ss_pred HH-HHHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEec
Confidence 96 5566665555431 2 3333344433 445557777777889888753
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.9e-05 Score=77.41 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=76.9
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.+|||||+|.||.. .+..|.+. +++|+ ++|+++++.. +... ....+++++++++. .+.|+|++|+|+
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 75 (362)
T 3fhl_A 5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK---ERYP-----QASIVRSFKELTED-PEIDLIVVNTPD 75 (362)
T ss_dssp CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG---TTCT-----TSEEESCSHHHHTC-TTCCEEEECSCG
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---HhCC-----CCceECCHHHHhcC-CCCCEEEEeCCh
Confidence 368999999999997 67777765 67765 7899987622 2110 35778999999874 347999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.+... +..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 76 ~~H~~~~~~a----l~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 76 NTHYEYAGMA----LEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp GGHHHHHHHH----HHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHH----HHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 7654444333 33444 565533 4456777788877777777554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.6e-05 Score=80.82 Aligned_cols=91 Identities=10% Similarity=0.104 Sum_probs=65.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC-------------------------
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY------------------------- 61 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~------------------------- 61 (505)
.+|+|||+|.+|...+..+...|.+|+++|+++++.+.+.+.+. ....
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 245 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGA-------EFLELDFKEEAGSGDGYAKVMSDAFIKAE 245 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTC-------EECCC--------CCHHHHHHSHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC-------EEEEecccccccccccchhhccHHHHHHH
Confidence 57999999999999999999999999999999998877654432 1111
Q ss_pred --CHHHHHhhcCCCcEEEEe--cCCCchHHHHH-HHHhhccCCCCEEEeCCC
Q 010652 62 --TPRDFVLSIQRPRSVIIL--VKAGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 62 --s~~e~v~~l~~advIil~--vp~~~~v~~vl-~~l~~~l~~g~iiId~st 108 (505)
++++++.. +|+||.+ +|... ...++ ++.+..+.+|.+|||.+.
T Consensus 246 ~~~l~e~~~~---aDvVI~~~~~pg~~-ap~li~~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 246 MELFAAQAKE---VDIIVTTALIPGKP-APKLITREMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp HHHHHHHHHH---CSEEEECCCCTTSC-CCCCBCHHHHHTSCTTCEEEETTG
T ss_pred HHHHHHHhCC---CCEEEECCccCCCC-CCeeeCHHHHhcCCCCcEEEEEcC
Confidence 24455555 9999998 44211 11112 345566788999999875
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00013 Score=73.28 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=65.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc--CCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE--GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~--g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+.+||+|||+|.+|.+++..|+.++. +|.++|+++++++......... -..++....+..+.+++ +|+||++.
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~---aDvVii~a 84 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD---ADLVVITA 84 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG---CSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEEcC
Confidence 35799999999999999999998886 8999999998775533211100 00022233334444555 99999998
Q ss_pred CCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.+. .++++.+.+..+ .++.+|+..||-.
T Consensus 85 g~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 128 (326)
T 2zqz_A 85 GAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPV 128 (326)
T ss_dssp CCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 6542 233344555555 4667777776643
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=4.2e-05 Score=79.31 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=65.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|+|||+|.||..++..|...|. +|+++||++++.+++.+.... ......++.+.+.. +|+||.++|.+.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~l~~~l~~---aDvVi~at~~~~ 239 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPH 239 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSS
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----ceecHHhHHHHhcC---CCEEEEccCCCC
Confidence 3579999999999999999999998 899999999987666543211 11112456666655 999999998765
Q ss_pred hHH--HHHHH-Hhh-ccCCCCEEEeCCC
Q 010652 85 PVD--QTIAA-LSE-HMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~--~vl~~-l~~-~l~~g~iiId~st 108 (505)
.+. ..++. +.+ .-.++.+++|.+.
T Consensus 240 ~~~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 240 PVIHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp CCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred ceecHHHHHHHHHhccCCCCEEEEEccC
Confidence 432 33333 221 1124557777753
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.8e-05 Score=76.56 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=80.8
Q ss_pred CcEEEEcccH---HHHHHHHHHHhCC-CcEE--EEeCChhHHHHHHHhhcccCCCCe---eeeCCHHHHHhhc----CCC
Q 010652 7 SRIGLAGLAV---MGQNLALNVAEKG-FPIS--VYNRTTSKVDETLDRAHREGQLPL---TGHYTPRDFVLSI----QRP 73 (505)
Q Consensus 7 ~~IgiIGlG~---mG~~lA~~La~~G-~~V~--v~dr~~~~~~~~~~~~~~~g~~~i---~~~~s~~e~v~~l----~~a 73 (505)
.+|||||+|. ||...+..+...+ ++|. ++|+++++.+++.++. ++ ..++|++++++.- ...
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~------g~~~~~~~~~~~~ll~~~~~~~~~v 86 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQL------GVDSERCYADYLSMFEQEARRADGI 86 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHT------TCCGGGBCSSHHHHHHHHTTCTTCC
T ss_pred ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHh------CCCcceeeCCHHHHHhcccccCCCC
Confidence 5899999999 9999999888765 6765 5799999988877653 23 5688999998742 248
Q ss_pred cEEEEecCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 74 RSVIILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
|+|++++|+....+.+...+ ..|+ ++++- -+....+.+++.+..+++|+.+.
T Consensus 87 D~V~i~tp~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 140 (398)
T 3dty_A 87 QAVSIATPNGTHYSITKAAL----EAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVG 140 (398)
T ss_dssp SEEEEESCGGGHHHHHHHHH----HTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEECCCcHHHHHHHHHHH----HCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 99999999976544433333 3444 44442 23445677778887777776553
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.9e-05 Score=75.17 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=76.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|+|+|-+|++++..|++.|. +|+++||++++.+++.+.... + ++.. .+.+++.. ..+|+||.++|.+..
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~-~--~~~~-~~~~~l~~--~~~DivInaTp~gm~ 194 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH-S--RLRI-SRYEALEG--QSFDIVVNATSASLT 194 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC-T--TEEE-ECSGGGTT--CCCSEEEECSSGGGG
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc-C--CeeE-eeHHHhcc--cCCCEEEECCCCCCC
Confidence 579999999999999999999996 899999999999888765321 0 1222 23344321 349999999998632
Q ss_pred HHH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 86 VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 86 v~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
-+. .+. ...+.++.+|+|.... |..|. +.+..+++|..
T Consensus 195 ~~~~~i~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~ 233 (272)
T 3pwz_A 195 ADLPPLP--ADVLGEAALAYELAYG-KGLTP-FLRLAREQGQA 233 (272)
T ss_dssp TCCCCCC--GGGGTTCSEEEESSCS-CCSCH-HHHHHHHHSCC
T ss_pred CCCCCCC--HHHhCcCCEEEEeecC-CCCCH-HHHHHHHCCCC
Confidence 110 010 1346789999999776 44453 44556677765
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0001 Score=73.62 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=63.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.||.++|..|+.+|+ +|.++|+++++++. +....... ...++..+.+ .+.+++ +|+||++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~-~~a~~~---aDvVii~ 76 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTND-YGPTED---SDVCIIT 76 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESS-SGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCC-HHHhCC---CCEEEEC
Confidence 589999999999999999999987 89999999987652 22111000 0012333334 333444 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.+.+. .++++.+.+..+ .++.+++..||-.
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 121 (314)
T 3nep_X 77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPL 121 (314)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSH
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCch
Confidence 85542 133333455554 4677888888743
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00022 Score=74.97 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=76.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~vp 81 (505)
+++|.|+|+|.+|+.++..|++.|++|+++||++++.+++.+... ++.. ..+.+++.+.++++|+||.++|
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~-----~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ-----HSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCT-----TEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcC-----CceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 368999999999999999999999999999999988776654311 1111 1233433333345999999998
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
..... .+... .+.+|..++|.+...+. +..+.+..++.|+.++.
T Consensus 78 ~~~~~-~i~~a---~l~~g~~vvd~~~~~~~-~~~l~~aA~~aGv~~i~ 121 (450)
T 1ff9_A 78 YTFHA-TVIKS---AIRQKKHVVTTSYVSPA-MMELDQAAKDAGITVMN 121 (450)
T ss_dssp --CHH-HHHHH---HHHHTCEEEESSCCCHH-HHHTHHHHHHTTCEEEC
T ss_pred cccch-HHHHH---HHhCCCeEEEeecccHH-HHHHHHHHHHCCCeEEe
Confidence 75332 23222 23457788887655543 45666777778887654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00017 Score=71.90 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcc----cCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHR----EGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~----~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.+|.+++..|+.++ .+|.++|+++++++........ ....+++. .+ .+..+ .+|+||++.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~~-~~a~~---~aD~Vii~a 75 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-GS-YGDLE---GARAVVLAA 75 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-CC-GGGGT---TEEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-CC-HHHhC---CCCEEEECC
Confidence 58999999999999999999987 5899999999877643221111 00012332 33 33344 499999988
Q ss_pred CCCch---------------HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGSP---------------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~---------------v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.+.. ++++.+.+..+ .++.+++..||-.
T Consensus 76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 119 (310)
T 2xxj_A 76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPV 119 (310)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCch
Confidence 65532 34444555555 4667777776643
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=75.99 Aligned_cols=109 Identities=14% Similarity=0.072 Sum_probs=73.5
Q ss_pred CCcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCCh--hHHHHHHH---hh--cccCCCCeeeeCCHHHHHhhcCC
Q 010652 6 LSRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTT--SKVDETLD---RA--HREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIGlG~m-G~~lA~~La~~-----G~~V~v~dr~~--~~~~~~~~---~~--~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
.+||+|||+|.+ |.+++..|+.+ +.+|.+||+++ ++++.... .. ......++..+.++++.+++
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g--- 83 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--- 83 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC---
Confidence 469999999999 88888888874 66899999999 87654221 11 00001246667788777776
Q ss_pred CcEEEEecCCCc-----------------------------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHH
Q 010652 73 PRSVIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 73 advIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~ 117 (505)
+|+||++++.+. .+.++++.+... .|+.++|..||-..-.|...
T Consensus 84 AD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~-~P~a~ii~~tNPvdivT~a~ 162 (450)
T 1s6y_A 84 ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAV 162 (450)
T ss_dssp CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHH
T ss_pred CCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHH
Confidence 999999999753 133444555554 47788888887654444433
Q ss_pred H
Q 010652 118 I 118 (505)
Q Consensus 118 ~ 118 (505)
.
T Consensus 163 ~ 163 (450)
T 1s6y_A 163 L 163 (450)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.72 E-value=7.3e-05 Score=73.70 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=79.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccC-CCCeeeeC--CHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREG-QLPLTGHY--TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g-~~~i~~~~--s~~e~v~~l~~advIil~vp~ 82 (505)
.++.|+|+|-+|++++..|++.|. +|+++||++++.+++.+.....+ ...+...+ ++++.+.. +|+||-++|.
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~---~DiVInaTp~ 204 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHH---SSEEEECSST
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhc---CCEEEECCCC
Confidence 579999999999999999999998 69999999999887765432100 01233443 67777776 9999999997
Q ss_pred CchHHH--HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 83 GSPVDQ--TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~--vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+-.-.. .+ -...+.++.+|+|.--.. ..| .+.+..+++|...++
T Consensus 205 Gm~~~~~~pi--~~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T 3jyo_A 205 GMPAHPGTAF--DVSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_dssp TSTTSCSCSS--CGGGCCTTCEEEECCCSS-SSC-HHHHHHHHHTCCEEC
T ss_pred CCCCCCCCCC--CHHHhCCCCEEEEecCCC-CCC-HHHHHHHHCcCeEeC
Confidence 631110 01 123577889999987654 334 333444566765443
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.8e-05 Score=75.20 Aligned_cols=87 Identities=10% Similarity=0.260 Sum_probs=63.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||+|||+|.||+.++..+.++ +.++ .++|+++++ .+. . ++..++++++++. ++|+|++++|+.
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-----~---gv~~~~d~~~ll~---~~DvViiatp~~ 69 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-----T---PVFDVADVDKHAD---DVDVLFLCMGSA 69 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-----S---CEEEGGGGGGTTT---TCSEEEECSCTT
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-----C---CCceeCCHHHHhc---CCCEEEEcCCcH
Confidence 46899999999999999999887 5664 588998665 211 1 3556678887764 499999999986
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
...+. +...+..|..+++....
T Consensus 70 ~h~~~----~~~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 70 TDIPE----QAPKFAQFACTVDTYDN 91 (320)
T ss_dssp THHHH----HHHHHTTTSEEECCCCC
T ss_pred HHHHH----HHHHHHCCCEEEECCCC
Confidence 54333 33445668878876654
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00018 Score=75.87 Aligned_cols=116 Identities=10% Similarity=0.045 Sum_probs=78.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|.|+|+|.+|+.++..|++. |++|+++||++++.+++.+.. . ..... ..+.+++.+.++++|+||.++|.
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~-~---~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~ 98 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPS-G---SKAISLDVTDDSALDKVLADNDVVISLIPY 98 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGG-T---CEEEECCTTCHHHHHHHHHTSSEEEECSCG
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhc-C---CcEEEEecCCHHHHHHHHcCCCEEEECCch
Confidence 35799999999999999999998 789999999999988877541 1 01111 12333333323349999999987
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+.. ..+.+. .+.+|..++|.+...+ .+..+.+..++.|+.+++
T Consensus 99 ~~~-~~v~~a---~l~~g~~vvd~~~~~p-~~~~Ll~~Ak~aGv~~i~ 141 (467)
T 2axq_A 99 TFH-PNVVKS---AIRTKTDVVTSSYISP-ALRELEPEIVKAGITVMN 141 (467)
T ss_dssp GGH-HHHHHH---HHHHTCEEEECSCCCH-HHHHHHHHHHHHTCEEEC
T ss_pred hhh-HHHHHH---HHhcCCEEEEeecCCH-HHHHHHHHHHHcCCEEEe
Confidence 532 233322 2446788889765444 345666666777887664
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00039 Score=70.31 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=65.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++||+|||+ |.+|.++|..++..|. +|.++|+++++++. +... ... ..++..+.++.+.+++ +|+||+
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~-~~~-~~~i~~t~d~~~al~d---ADvVvi 82 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-GFE-GLNLTFTSDIKEALTD---AKYIVS 82 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH-CCT-TCCCEEESCHHHHHTT---EEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC-cCC-CCceEEcCCHHHHhCC---CCEEEE
Confidence 468999998 9999999999999984 89999999887654 2221 111 0145666788777776 999999
Q ss_pred ecCCCc---------------hHHHHHHHHhhccCCCC-EEEeCCCC
Q 010652 79 LVKAGS---------------PVDQTIAALSEHMSPGD-CIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~-iiId~st~ 109 (505)
+...+. .++++.+.+.... ++. +++..||-
T Consensus 83 taG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNP 128 (343)
T 3fi9_A 83 SGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNP 128 (343)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCc
Confidence 863321 1333334555554 455 36677663
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0001 Score=75.10 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=68.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|+|+|.+|...+..+...|.+|+++||++++.+.+.+.+... + ....+.+++.+.++++|+||.+++.+..
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR----VELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG----SEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCce----eEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 5799999999999999999999999999999999988877654321 1 1122333333333349999999866431
Q ss_pred -HHH-HHHHHhhccCCCCEEEeCCCC
Q 010652 86 -VDQ-TIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 -v~~-vl~~l~~~l~~g~iiId~st~ 109 (505)
... +.+...+.+.+|.+|+|.+..
T Consensus 244 ~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 244 RAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred CCCeecCHHHHhhCCCCCEEEEEecC
Confidence 000 123445667788888888753
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00023 Score=72.51 Aligned_cols=112 Identities=19% Similarity=0.140 Sum_probs=75.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--------Cc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG--------FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G--------~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
-+|||||+|.||...+..+.+.. .+ |.++|+++++.+++.++... ...++|.++++++ .+.|+|+
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~-----~~~~~d~~~ll~~-~~iDaV~ 80 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW-----STTETDWRTLLER-DDVQLVD 80 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESCHHHHTTC-TTCSEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC-----CcccCCHHHHhcC-CCCCEEE
Confidence 37999999999999888877542 24 45889999999888765421 2568899999875 3479999
Q ss_pred EecCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHH---HHHHcCCeE
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIH---EASQKGLLY 128 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~---~l~~~gi~~ 128 (505)
+++|+....+.++..+. .|+ +++.- =+....+.+++.+ ...++|+.+
T Consensus 81 I~tP~~~H~~~~~~al~----aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~ 132 (390)
T 4h3v_A 81 VCTPGDSHAEIAIAALE----AGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS 132 (390)
T ss_dssp ECSCGGGHHHHHHHHHH----TTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred EeCChHHHHHHHHHHHH----cCCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence 99999766555544443 343 55552 1223456666633 344456543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0004 Score=69.86 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh---hc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR---AH-REGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~---~~-~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||.++|..|+.+|+ +|.++|+++++++..... .. ......+....++++ ++ .+|+||++
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~~---~aDiVvi~ 94 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-TA---NSKLVIIT 94 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-GT---TEEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-hC---CCCEEEEc
Confidence 4689999999999999999999998 899999998876543211 10 000002444566654 33 39999998
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
...+. .++++.+.+..+ .++.+++..||-.
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPv 139 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPV 139 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChH
Confidence 74321 234444566665 5777888888743
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=8.5e-05 Score=76.42 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee--eeC---------------C-------
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT--GHY---------------T------- 62 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~--~~~---------------s------- 62 (505)
.+|+|+|+|.+|...+..+...|.+|+++|+++++.+.+.+.+.. .. ... +
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~-----~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~ 247 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-----FITVDDEAMKTAETAGGYAKEMGEEFRKKQ 247 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-----ECCC-----------------------CCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-----EEeecccccccccccccchhhcCHHHHhhh
Confidence 589999999999999999999999999999999887776554321 11 000 0
Q ss_pred ---HHHHHhhcCCCcEEEEec--CCCchHHHHH-HHHhhccCCCCEEEeCCC
Q 010652 63 ---PRDFVLSIQRPRSVIILV--KAGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 63 ---~~e~v~~l~~advIil~v--p~~~~v~~vl-~~l~~~l~~g~iiId~st 108 (505)
+++.+ +.+|+||.++ |.... ..++ ++.+..+++|.+|||.+.
T Consensus 248 ~~~l~~~~---~~aDvVi~~~~~pg~~~-~~li~~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 248 AEAVLKEL---VKTDIAITTALIPGKPA-PVLITEEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp HHHHHHHH---TTCSEEEECCCCTTSCC-CCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHHHHh---CCCCEEEECCccCCCCC-CeeeCHHHHhcCCCCCEEEEEec
Confidence 33333 3489999888 32111 1122 445566788899999873
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00037 Score=69.96 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=64.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCC--CCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQ--LPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~--~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++.......+... .++....+..+..++ +|+||++..
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~---aDiVvi~ag 85 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKD---ADLVVITAG 85 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTT---CSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcC---CCEEEECCC
Confidence 4689999999999999999999988 899999999877633211100000 023333343343444 999999874
Q ss_pred CCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+. .++++.+.+..+ .++.+++..||-
T Consensus 86 ~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNP 127 (326)
T 3vku_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp CC----------------CHHHHHHHHHTT-TCCSEEEECSSS
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCc
Confidence 431 134444555554 467778888763
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=73.59 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=77.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC---------CCcEE-EEeCChhHHH-----HHHHhhcccCCCCeeeeC--CHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK---------GFPIS-VYNRTTSKVD-----ETLDRAHREGQLPLTGHY--TPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~---------G~~V~-v~dr~~~~~~-----~~~~~~~~~g~~~i~~~~--s~~e~v~ 68 (505)
|++|||||+|.||+.++..|.++ +.+|. ++|+++++.+ +..+..... ...++ +++++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~----~~~~~~~d~~~ll~ 77 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET----GMLRDDAKAIEVVR 77 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHH----SSCSBCCCHHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccC----ccccCCCCHHHHhc
Confidence 36899999999999999999875 45554 6788865422 111111000 12334 8999987
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChh-hHHHHHHHHHHcCCeEE-cCCCCCC
Q 010652 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGG 136 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~t~~~~~~l~~~gi~~v-~~pvsgg 136 (505)
+ ...|+|+.|+|+....-+..+.....+..|.-|+..+..... ...++.+..+++|..|+ .+-+.+|
T Consensus 78 ~-~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g 146 (327)
T 3do5_A 78 S-ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGA 146 (327)
T ss_dssp H-SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTT
T ss_pred C-CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeec
Confidence 5 347999999998632111334456667889888876543322 33445555566787654 4444443
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00062 Score=70.96 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=75.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHh--hc-----------------ccCCCCeeeeCCHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDR--AH-----------------REGQLPLTGHYTPR 64 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V-~v~dr~~~~~~~~~~~--~~-----------------~~g~~~i~~~~s~~ 64 (505)
+.+|||||+|.||..++..+.+. +.+| .++|+++++.+++.++ +. ..+ ....+++.+
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g--~~~v~~D~e 100 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAG--KIAVTDDND 100 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTT--CEEEESCHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccC--CceEECCHH
Confidence 45899999999999999988764 5564 4789999998877643 20 000 246788999
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhh---HHHHHHHHHHcCCeEE
Q 010652 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN---TERRIHEASQKGLLYL 129 (505)
Q Consensus 65 e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---t~~~~~~l~~~gi~~v 129 (505)
++++. ...|+|++++|.+..- .+-....+..|+-|+-... +.+ ..++.+..+++|+.|.
T Consensus 101 eLL~d-~dIDaVviaTp~p~~H---~e~a~~AL~AGKHVv~~nk--~l~~~eg~eL~~~A~e~Gvvl~ 162 (446)
T 3upl_A 101 LILSN-PLIDVIIDATGIPEVG---AETGIAAIRNGKHLVMMNV--EADVTIGPYLKAQADKQGVIYS 162 (446)
T ss_dssp HHHTC-TTCCEEEECSCCHHHH---HHHHHHHHHTTCEEEECCH--HHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHhcC-CCCCEEEEcCCChHHH---HHHHHHHHHcCCcEEecCc--ccCHHHHHHHHHHHHHhCCeee
Confidence 99874 2479999999874221 2333444567777774322 222 2344444455566544
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00026 Score=70.85 Aligned_cols=114 Identities=12% Similarity=-0.046 Sum_probs=77.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--------hcCCCcE
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--------SIQRPRS 75 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--------~l~~adv 75 (505)
|++|||||+ |.||...+..|.+.|.++ .++|+++++. .+.+... ....+++.+++.+ .-.+.|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~~vD~ 76 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISP-----QSEFFTEFEFFLDHASNLKRDSATALDY 76 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESSHHHHHHHHHHHTTSTTTSCCE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCcEECCHHHHHHhhhhhhhccCCCCcE
Confidence 479999999 799999999999988875 4789998762 2222111 3577889999883 1135899
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
|++++|+....+.+...+. .|+ ++++-= +....+.+++.+..+++|+.+.
T Consensus 77 V~I~tP~~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 128 (318)
T 3oa2_A 77 VSICSPNYLHYPHIAAGLR----LGCDVICEKPLVPTPEMLDQLAVIERETDKRLY 128 (318)
T ss_dssp EEECSCGGGHHHHHHHHHH----TTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred EEECCCcHHHHHHHHHHHH----CCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 9999999755443333332 343 555532 3455677777777777776553
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00019 Score=70.95 Aligned_cols=114 Identities=16% Similarity=0.038 Sum_probs=77.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..++|+|+|+ |.||..++.++.+.|++ .++..+|.+.. +. .. ++..+.|++|+.+.. .+|++++++|+.
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~-~~Dv~Ii~vp~~ 75 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGG---ME--VL---GVPVYDTVKEAVAHH-EVDASIIFVPAP 75 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHS-CCSEEEECCCHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCC---ce--EC---CEEeeCCHHHHhhcC-CCCEEEEecCHH
Confidence 3468999998 99999999999999998 44555554310 00 11 477889999998711 299999999984
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChh-hHHHHHHHHHHcCCeEEcC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~-~t~~~~~~l~~~gi~~v~~ 131 (505)
.+.+++++....- ...+|+ .++..+. +..++.+..++.|+.+++.
T Consensus 76 -~~~~~~~ea~~~G-i~~vVi-~t~G~~~~~~~~l~~~a~~~gi~vigP 121 (288)
T 1oi7_A 76 -AAADAALEAAHAG-IPLIVL-ITEGIPTLDMVRAVEEIKALGSRLIGG 121 (288)
T ss_dssp -HHHHHHHHHHHTT-CSEEEE-CCSCCCHHHHHHHHHHHHHHTCEEEES
T ss_pred -HHHHHHHHHHHCC-CCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 6677776666532 222444 4445443 4456667777789887753
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00072 Score=66.98 Aligned_cols=105 Identities=9% Similarity=0.000 Sum_probs=80.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchh
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.++++.+|+++|.+.++.++.++|++.+.++ +++|.+++.++|+.|. .+|+.++........++..+.
T Consensus 167 ~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~------~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~p~----- 234 (297)
T 4gbj_A 167 PGAANVIKLAGNFMIACSLEMMGEAFTMAEK------NGISRQSIYEMLTSTL-FAAPIFQNYGKLVASNTYEPV----- 234 (297)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHTTT-TCSHHHHHHHHHHHHTCCCSC-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhhc-ccCchhhccCccccCCCCCCc-----
Confidence 3789999999999999999999999999885 3499999999999884 578888876555444322110
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (505)
-|.-. -...+++-++..|-+.|+|+|....+...|..
T Consensus 235 ~f~~~--l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~ 271 (297)
T 4gbj_A 235 AFRFP--LGLKDINLTLQTASDVNAPMPFADIIRNRFIS 271 (297)
T ss_dssp SSBHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cchhH--HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 12221 12346788899999999999999988887653
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00035 Score=71.50 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCcEEEEc-ccHHHHH-HH----HHHHhCC-CcE----------EEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHH
Q 010652 6 LSRIGLAG-LAVMGQN-LA----LNVAEKG-FPI----------SVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~-lA----~~La~~G-~~V----------~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v 67 (505)
++|||||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+++.+.. ++ ..++++++++
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~------~~~~~~~~~~~ll 79 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRF------NIARWTTDLDAAL 79 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHT------TCCCEESCHHHHH
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHh------CCCcccCCHHHHh
Confidence 46899999 9999998 66 6666554 222 49999999988887653 23 4678999999
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEE-eC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCII-DG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+. ...|+|++++|+....+.+. ..+..|+-|+ +- -.....+..++.+..+++|+.+.
T Consensus 80 ~~-~~iD~V~i~tp~~~h~~~~~----~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~ 138 (383)
T 3oqb_A 80 AD-KNDTMFFDAATTQARPGLLT----QAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHG 138 (383)
T ss_dssp HC-SSCCEEEECSCSSSSHHHHH----HHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred cC-CCCCEEEECCCchHHHHHHH----HHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 85 34799999999976544333 3344555444 32 13455677777777777776543
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00027 Score=71.05 Aligned_cols=107 Identities=8% Similarity=0.099 Sum_probs=73.6
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQ-NLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~-~lA~~La~~-G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||. ..+..|.+. +++| .++|+++++ . ++..+.+++++++...+.|+|++++|+
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~-------g~~~~~~~~~ll~~~~~vD~V~i~tp~ 91 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------E-------GVNSYTTIEAMLDAEPSIDAVSLCMPP 91 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------T-------TSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------c-------CCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence 35899999999998 788888876 6675 478998653 1 356789999998754468999999997
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeCC-CCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+ ++. ..+..|. ++++.- .....+.+++.+..+++|+.+.
T Consensus 92 ~~H~~-~~~---~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 136 (330)
T 4ew6_A 92 QYRYE-AAY---KALVAGKHVFLEKPPGATLSEVADLEALANKQGASLF 136 (330)
T ss_dssp HHHHH-HHH---HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHH-HHH---HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 54333 222 2333455 444421 3345667777777777777554
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0003 Score=70.72 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=62.2
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCC--CcEEEEeCChhH--HHHHHHhhcccCCCCeee---eCCHHHHHhhcCCCcEE
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKG--FPISVYNRTTSK--VDETLDRAHREGQLPLTG---HYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G--~~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~---~~s~~e~v~~l~~advI 76 (505)
++|||+|+| .|.+|.+++..|+..| ++|.++|++++. ..++..... . ..+.. .+++++.+++ +|+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~-~--~~v~~~~~t~d~~~al~g---aDvV 80 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDT-G--AVVRGFLGQQQLEAALTG---MDLI 80 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCS-S--CEEEEEESHHHHHHHHTT---CSEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccc-c--ceEEEEeCCCCHHHHcCC---CCEE
Confidence 457999999 7999999999999999 899999998762 222222111 0 02333 2244555555 9999
Q ss_pred EEecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 77 IILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 77 il~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
|++.+.+. .++++++.+.... +..+|+..||-
T Consensus 81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNP 127 (326)
T 1smk_A 81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNP 127 (326)
T ss_dssp EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSS
T ss_pred EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCc
Confidence 99985432 2344445555544 55666666553
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00025 Score=67.39 Aligned_cols=113 Identities=8% Similarity=0.019 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHh-hcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVL-SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~-~l~~advIil~vp~~ 83 (505)
.++|.|+|+|.+|..++..|.+.|+ |++.|+++++++.+. .+.. -+... .+.+.+.+ .++++|.|+++++++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~----~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGAN----FVHGDPTRVSDLEKANVRGARAVIVDLESD 82 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCE----EEESCTTCHHHHHHTTCTTCSEEEECCSCH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCe----EEEcCCCCHHHHHhcCcchhcEEEEcCCCc
Confidence 4679999999999999999999999 999999999887766 3321 01111 23333322 356799999999885
Q ss_pred chHHHHHHHHhhccCCC-CEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 84 SPVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
.....+-..+..+.++ .+|+..++.. .. +.+...|+..+-.
T Consensus 83 -~~n~~~~~~a~~~~~~~~iia~~~~~~--~~----~~l~~~G~~~vi~ 124 (234)
T 2aef_A 83 -SETIHCILGIRKIDESVRIIAEAERYE--NI----EQLRMAGADQVIS 124 (234)
T ss_dssp -HHHHHHHHHHHHHCSSSEEEEECSSGG--GH----HHHHHHTCSEEEC
T ss_pred -HHHHHHHHHHHHHCCCCeEEEEECCHh--HH----HHHHHCCCCEEEC
Confidence 3333334444555565 6777765543 22 2233457765433
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00037 Score=69.65 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=65.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChhHH--HHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKV--DETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G--~~V~v~dr~~~~~--~~~~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil 78 (505)
|||+|||+ |.+|.+++..|+..| .+|.++|+++.+. .++.+ .... .++... +++++.+++ +|+||+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~-~~~~--~~l~~~~~t~d~~~a~~~---aDvVvi 74 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSH-IETR--ATVKGYLGPEQLPDCLKG---CDVVVI 74 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTT-SSSS--CEEEEEESGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhc-cCcC--ceEEEecCCCCHHHHhCC---CCEEEE
Confidence 58999998 999999999999998 6899999987221 12211 1110 023432 467776666 999999
Q ss_pred ecCCC---------------chHHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 79 LVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 79 ~vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
+...+ ..++++++.+.+.. ++.+++..|| |.++.
T Consensus 75 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sN--Pv~~~ 123 (314)
T 1mld_A 75 PAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISN--PVNST 123 (314)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSS--CHHHH
T ss_pred CCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECC--Ccchh
Confidence 98443 12455556666655 5556666665 44443
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00029 Score=70.30 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=77.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh-------hcCCCcEE
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL-------SIQRPRSV 76 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~-------~l~~advI 76 (505)
|++|||||+ |.||...+..+.+.+.+| .++|+++++. .+.+... ....+.+.+++.+ .-.+.|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~vD~V 76 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFP-----EAEFFTEPEAFEAYLEDLRDRGEGVDYL 76 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESCHHHHHHHHHHHHHTTCCCSEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCceeCCHHHHHHHhhhhcccCCCCcEE
Confidence 469999999 789999999999988875 4789998862 2222111 3577899999883 11458999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
++++|+....+.+... +..|+ ++++- -+....+.+++.+..+++|+.+.
T Consensus 77 ~I~tP~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 127 (312)
T 3o9z_A 77 SIASPNHLHYPQIRMA----LRLGANALSEKPLVLWPEEIARLKELEARTGRRVY 127 (312)
T ss_dssp EECSCGGGHHHHHHHH----HHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred EECCCchhhHHHHHHH----HHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9999997554433333 33444 55542 13345677777777777777553
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00029 Score=69.77 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=77.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
.++.|+|+ |.||..+++++.+.|++ .++..+|.+.. ++ .. ++..+.|++|+.+ . +|++++++|+.
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~~---~Dv~ii~vp~~ 81 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGG---QN--VH---GVPVFDTVKEAVKETD---ANASVIFVPAP 81 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHHC---CCEEEECCCHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCC---ce--EC---CEeeeCCHHHHhhcCC---CCEEEEccCHH
Confidence 56888898 99999999999999999 66666665320 00 11 4678899999987 5 99999999985
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCCh-hhHHHHHHHHHHcCCeEEcC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~-~~t~~~~~~l~~~gi~~v~~ 131 (505)
.+.+++++....- ...+| -.++..+ .+..++.+..++.|+.+++.
T Consensus 82 -~~~~~v~ea~~~G-i~~vV-i~t~G~~~~~~~~l~~~A~~~gi~viGP 127 (294)
T 2yv1_A 82 -FAKDAVFEAIDAG-IELIV-VITEHIPVHDTMEFVNYAEDVGVKIIGP 127 (294)
T ss_dssp -HHHHHHHHHHHTT-CSEEE-ECCSCCCHHHHHHHHHHHHHHTCEEECS
T ss_pred -HHHHHHHHHHHCC-CCEEE-EECCCCCHHHHHHHHHHHHHcCCEEEcC
Confidence 5666766665531 22234 3444444 34556677777789887753
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00031 Score=72.76 Aligned_cols=119 Identities=17% Similarity=0.104 Sum_probs=75.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHhhcccCCCCeee-------eCCHHHHHhhcCCCcEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG---FPISVYNRTTSKVDETLDRAHREGQLPLTG-------HYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G---~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-------~~s~~e~v~~l~~advI 76 (505)
++|+|+|+|.+|..++..|+++| .+|.++||++++.+++.+.....+..++.. ..+++++++.. ++|+|
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-~~DvV 80 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-KPQIV 80 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-CCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-CCCEE
Confidence 58999999999999999999998 389999999999888765432100001111 12233444432 37999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhh--------HHHHHHHHHHcCCeEEc
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--------TERRIHEASQKGLLYLG 130 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--------t~~~~~~l~~~gi~~v~ 130 (505)
|.+.|... ...+++.. +..|..++|.++..+.+ ..++.+..++.|+.++.
T Consensus 81 in~ag~~~-~~~v~~a~---l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~ 138 (405)
T 4ina_A 81 LNIALPYQ-DLTIMEAC---LRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL 138 (405)
T ss_dssp EECSCGGG-HHHHHHHH---HHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred EECCCccc-ChHHHHHH---HHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence 99987643 33343333 34577788875543321 23455556666776543
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00013 Score=71.80 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC--C--CCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG--Q--LPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g--~--~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++.|+|.|.||.++|..|++.| +|+++||++++.+++.+.....+ . ..+... +. .+.+.++|+||.+++.
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~---~~~~~~~DilVn~ag~ 203 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS-GL---DVDLDGVDIIINATPI 203 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE-CT---TCCCTTCCEEEECSCT
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEe-eH---HHhhCCCCEEEECCCC
Confidence 57999999999999999999999 99999999998877764321100 0 001221 22 2334459999999987
Q ss_pred CchH--HHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPV--DQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v--~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+..- +.. +. -...+.++.+++|.+.. |..+ ++.+..+++|..++
T Consensus 204 ~~~~~~~~~~~~-~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 204 GMYPNIDVEPIV-KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTI 250 (287)
T ss_dssp TCTTCCSSCCSS-CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEE
T ss_pred CCCCCCCCCCCC-CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEe
Confidence 6421 000 10 02356789999999874 4444 34455566676644
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00064 Score=70.99 Aligned_cols=118 Identities=18% Similarity=0.263 Sum_probs=76.2
Q ss_pred CcEEEEcccHHHHHHHHHHHh----------CCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLALNVAE----------KGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~----------~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
.+|||||+|.||..++..|.+ .+.+| .++|+++++.+.+.. ....++++++++++ ...|+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------~~~~~~d~~ell~d-~diDv 81 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------GLPLTTNPFDVVDD-PEIDI 81 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------TCCEESCTHHHHTC-TTCCE
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------cCcccCCHHHHhcC-CCCCE
Confidence 479999999999999987764 24454 478999988766532 13567899999874 24799
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC-ChhhHHHHHHHHHHcCCeE-EcCCCCCC
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~t~~~~~~l~~~gi~~-v~~pvsgg 136 (505)
|++++|......+.+ ...+..|.-|+..... ......++.+..+++|+.| +.+.+.+|
T Consensus 82 Vve~tp~~~~h~~~~---~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~g 141 (444)
T 3mtj_A 82 VVELIGGLEPARELV---MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGG 141 (444)
T ss_dssp EEECCCSSTTHHHHH---HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred EEEcCCCchHHHHHH---HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCC
Confidence 999998633333333 3445577777754331 1122344555556678777 35545443
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00065 Score=67.07 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=76.3
Q ss_pred CCcc-CCCcEEEEcccHHHHHHHHHHHh----CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010652 1 MEAS-ALSRIGLAGLAVMGQNLALNVAE----KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 1 M~~~-~~~~IgiIGlG~mG~~lA~~La~----~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
|..+ .+++|||||+|.||...+.++.+ .+.+++ ++|++.. .+ .. ++. ..++++++++ .+.|
T Consensus 1 M~~~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~---~~---g~~-~~~~~ell~~-~~vD 67 (294)
T 1lc0_A 1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GS---LD---EVR-QISLEDALRS-QEID 67 (294)
T ss_dssp CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CE---ET---TEE-BCCHHHHHHC-SSEE
T ss_pred CCCCCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HH---Hc---CCC-CCCHHHHhcC-CCCC
Confidence 5433 34689999999999999998875 356654 7788641 11 11 233 5799999873 2379
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+|++++|+....+.+.. .+..|+ ++++- -+....+.+++.+..+++|+.+..+
T Consensus 68 ~V~i~tp~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~ 122 (294)
T 1lc0_A 68 VAYICSESSSHEDYIRQ----FLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEE 122 (294)
T ss_dssp EEEECSCGGGHHHHHHH----HHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCcHhHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 99999998755444333 333455 66663 4456677888888888888765543
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0003 Score=70.57 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=76.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-------CCcEE-EEeCChhHH------HHHHHhhcccCCCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-------GFPIS-VYNRTTSKV------DETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-------G~~V~-v~dr~~~~~------~~~~~~~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
+.+|+|||+|.||+.++..|.++ +.+|. +.|++++.. +++.+.....+...-... +..+++.+ .
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~-~ 81 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG-E 81 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT-S
T ss_pred eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC-C
Confidence 46899999999999999999874 34544 668876421 122111100000000011 66776654 3
Q ss_pred CCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCCh-hhHHHHHHHHHHcCCeE-EcCCCCCCh
Q 010652 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLY-LGMGVSGGE 137 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~t~~~~~~l~~~gi~~-v~~pvsgg~ 137 (505)
..|+|+.|+|+....+...+.....|..|.-||....... ....++.+..+++|..| +.+.+.+|.
T Consensus 82 ~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~gi 149 (325)
T 3ing_A 82 AADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGV 149 (325)
T ss_dssp CCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTS
T ss_pred CCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccC
Confidence 4899999999753334344555566778888887665332 23444555556667755 445555543
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00034 Score=69.92 Aligned_cols=121 Identities=14% Similarity=0.176 Sum_probs=76.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC---hhHHHHHHHhhcccCCCCee--eeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT---TSKVDETLDRAHREGQLPLT--GHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~---~~~~~~~~~~~~~~g~~~i~--~~~s~~e~v~~l~~advIil~v 80 (505)
+++.|+|+|-+|++++..|++.|. +|+++||+ .++.+++.++........+. ..++.+++.+.+..+|+||-++
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence 579999999999999999999998 89999999 88887776542211000122 2233333333233499999999
Q ss_pred CCCchHH--H-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 81 KAGSPVD--Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 81 p~~~~v~--~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
|.+-.-+ . .+. ....++++.+|+|.--... .| .+.+..+++|...++
T Consensus 235 p~Gm~~~~~~~p~~-~~~~l~~~~~V~DlvY~P~-~T-~ll~~A~~~G~~~~~ 284 (315)
T 3tnl_A 235 GVGMKPFEGETLLP-SADMLRPELIVSDVVYKPT-KT-RLLEIAEEQGCQTLN 284 (315)
T ss_dssp STTSTTSTTCCSCC-CGGGCCTTCEEEESCCSSS-SC-HHHHHHHHTTCEEEC
T ss_pred cCCCCCCCCCCCCC-cHHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCCeEeC
Confidence 9762211 0 000 1234678899999876543 34 344455667765543
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00034 Score=68.81 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|-+|++++..|++.|. +|+++||++++.+++.+.. . ..+.+++.+ + .+|+||.++|.+-.
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~--------~-~~~~~~l~~-l-~~DivInaTp~Gm~ 191 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF--------K-VISYDELSN-L-KGDVIINCTPKGMY 191 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTS--------E-EEEHHHHTT-C-CCSEEEECSSTTST
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhc--------C-cccHHHHHh-c-cCCEEEECCccCcc
Confidence 579999999999999999999998 8999999999988776431 1 123344333 4 59999999988621
Q ss_pred H--HHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 V--DQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v--~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
- +.. +. ...+.++.+|+|..-.. ..| .+.+..+++|...++
T Consensus 192 ~~~~~~pi~--~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~~~ 235 (282)
T 3fbt_A 192 PKEGESPVD--KEVVAKFSSAVDLIYNP-VET-LFLKYARESGVKAVN 235 (282)
T ss_dssp TSTTCCSSC--HHHHTTCSEEEESCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred CCCccCCCC--HHHcCCCCEEEEEeeCC-CCC-HHHHHHHHCcCeEeC
Confidence 1 100 10 12356789999987644 333 344455667766554
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.41 E-value=9.2e-05 Score=72.07 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=52.0
Q ss_pred cCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 4 ~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.|+|+|.|.|+|.+|+.++..|+++|++|++.+|++++.+.+...+.. . ...++.++ + +.++|+||.+...
T Consensus 3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-~~~D~~d~-~-~~~~d~vi~~a~~ 73 (286)
T 3ius_A 3 AMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAE-----P-LLWPGEEP-S-LDGVTHLLISTAP 73 (286)
T ss_dssp --CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEE-----E-EESSSSCC-C-CTTCCEEEECCCC
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCe-----E-EEeccccc-c-cCCCCEEEECCCc
Confidence 456899999999999999999999999999999999887776554321 1 11233331 1 4568999988754
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0002 Score=72.16 Aligned_cols=115 Identities=6% Similarity=-0.029 Sum_probs=73.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||||||+|.+|...+..| ..+.+|+ ++|+++ ++.+++.+.....| .+...++|+++++++ .+.|+|++++|+.
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~-~~vD~V~I~tp~~ 78 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMN-IKPKKYNNWWEMLEK-EKPDILVINTVFS 78 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTT-CCCEECSSHHHHHHH-HCCSEEEECSSHH
T ss_pred ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcC-CCCcccCCHHHHhcC-CCCCEEEEeCCcc
Confidence 57999999999998888777 6677765 789987 34444433211110 123678999999874 2479999999986
Q ss_pred chHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCe
Q 010652 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~ 127 (505)
...+.+... +..|. ++++- -.....+.+++.+..++.|..
T Consensus 79 ~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 79 LNGKILLEA----LERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHHHHHHH----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHH----HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 444333333 33444 45442 123445677777777777754
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00021 Score=70.40 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=65.3
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCChhH-H----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEK-GFPIS-VYNRTTSK-V----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~-G~~V~-v~dr~~~~-~----~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
+++||+|+| +|.||+.++..+.+. ++++. ++|+++.. . .++.... ..++..++++++++.. +|+|
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~----~~gv~v~~dl~~ll~~---aDVv 92 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD----FLGVRITDDPESAFSN---TEGI 92 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS----CCSCBCBSCHHHHTTS---CSEE
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC----cCCceeeCCHHHHhcC---CCEE
Confidence 456899999 999999999998754 67755 66987532 1 1111000 1246778899998875 9999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhH
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t 114 (505)
|-+.++ ..+. +.+...+..|.-+|.++|+.....
T Consensus 93 IDFT~p-~a~~---~~~~~~l~~Gv~vViGTTG~~~e~ 126 (288)
T 3ijp_A 93 LDFSQP-QASV---LYANYAAQKSLIHIIGTTGFSKTE 126 (288)
T ss_dssp EECSCH-HHHH---HHHHHHHHHTCEEEECCCCCCHHH
T ss_pred EEcCCH-HHHH---HHHHHHHHcCCCEEEECCCCCHHH
Confidence 988754 2333 333444556777888888865433
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00031 Score=68.68 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=64.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCChhHH-----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPIS-VYNRTTSKV-----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~-G~~V~-v~dr~~~~~-----~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+||+|+| .|.||+.+++.+.+. ++++. ++|++++.. .++. +... ++..+++++++++. +|+||
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~--g~~~---gv~v~~dl~~ll~~---~DVVI 78 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFL--GKQT---GVALTDDIERVCAE---ADYLI 78 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTT--TCCC---SCBCBCCHHHHHHH---CSEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHh--CCCC---CceecCCHHHHhcC---CCEEE
Confidence 47999999 899999999998865 66766 479875421 0111 0001 35667899998887 99999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhh
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 113 (505)
.+.++. .+.+.+.. .+..|.-+|.++|.....
T Consensus 79 DfT~p~-a~~~~~~~---al~~G~~vVigTTG~s~~ 110 (272)
T 4f3y_A 79 DFTLPE-GTLVHLDA---ALRHDVKLVIGTTGFSEP 110 (272)
T ss_dssp ECSCHH-HHHHHHHH---HHHHTCEEEECCCCCCHH
T ss_pred EcCCHH-HHHHHHHH---HHHcCCCEEEECCCCCHH
Confidence 988653 44444433 344677777777776443
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0011 Score=66.43 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=71.5
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHH-hhcCCCcEEEEe--
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFV-LSIQRPRSVIIL-- 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~G~~V~v~dr~~--~~~~~~~~~~~~~g~~~i~~~~s~~e~v-~~l~~advIil~-- 79 (505)
+++|.|||+|.+|.+ +|+.|.+.|++|+++|+++ ...+++.+.+. .+..-.+++++. .. +|+||.+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi-----~v~~g~~~~~l~~~~---~d~vV~Spg 75 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGI-----DVYEGFDAAQLDEFK---ADVYVIGNV 75 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTC-----EEEESCCGGGGGSCC---CSEEEECTT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCC-----EEECCCCHHHcCCCC---CCEEEECCC
Confidence 468999999999995 9999999999999999874 34555655443 133334555544 23 8999985
Q ss_pred cCCCch-HHHHHH---------HH-hhccCCC--CEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 80 VKAGSP-VDQTIA---------AL-SEHMSPG--DCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 80 vp~~~~-v~~vl~---------~l-~~~l~~g--~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
+|.+.+ +....+ ++ ...+.++ -|-|-+||+...++.-+...++..|.
T Consensus 76 i~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 76 AKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp CCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 444332 333221 22 2222222 35666677776666666677777664
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00048 Score=68.50 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=77.9
Q ss_pred CcEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLA-GL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiI-Gl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|| |+ |.+|...+.+|.+.|++ .+|+.+|.+.. ++ .. ++..+.|++|+.+.. .+|++++++|+.
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~-~vD~avI~vP~~- 82 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGG---KT--HL---GLPVFNTVKEAKEQT-GATASVIYVPPP- 82 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHH-CCCEEEECCCHH-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCc---ce--EC---CeeeechHHHhhhcC-CCCEEEEecCHH-
Confidence 468999 98 99999999999999999 55666665311 00 11 467888999998711 299999999995
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC-hhhHHHHHHHHHHc-CCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQK-GLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~-~~~t~~~~~~l~~~-gi~~v~~ 131 (505)
.+.++++++...- ...+|+ .+... ..+..++.+.+++. |+.+++.
T Consensus 83 ~~~~~~~e~i~~G-i~~iv~-~t~G~~~~~~~~l~~~a~~~~gi~liGP 129 (305)
T 2fp4_A 83 FAAAAINEAIDAE-VPLVVC-ITEGIPQQDMVRVKHRLLRQGKTRLIGP 129 (305)
T ss_dssp HHHHHHHHHHHTT-CSEEEE-CCCCCCHHHHHHHHHHHTTCSSCEEECS
T ss_pred HHHHHHHHHHHCC-CCEEEE-ECCCCChHHHHHHHHHHHhcCCcEEEeC
Confidence 6677777666532 233343 44443 34455677777888 9988863
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00044 Score=68.67 Aligned_cols=108 Identities=16% Similarity=0.048 Sum_probs=77.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcc--
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV-- 402 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~-- 402 (505)
.++++.+|+++|.+.++.|+.++|++.|.++. ++|.+++.++|+.|. -+|+.++........ ..+...
T Consensus 166 ~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~------Gld~~~~~~vl~~~~-~~s~~~~~~~p~~~~---~~~~~~~~ 235 (300)
T 3obb_A 166 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVAN------GLEAKVLAEIMRRSS-GGNWALEVYNPWPGV---MENAPASR 235 (300)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCCHHHHHCCCSTTT---STTSGGGG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHhCc-ccchHHHhhccccch---hhhccccc
Confidence 37899999999999999999999999998853 399999999999874 467766532111000 011111
Q ss_pred --hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010652 403 --DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 403 --~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (505)
++.|.-. -...+++.++..|.+.|+|+|..+.+...|...
T Consensus 236 ~~~~~f~~~--l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a 277 (300)
T 3obb_A 236 DYSGGFMAQ--LMAKDLGLAQEAAQASASSTPMGSLALSLYRLL 277 (300)
T ss_dssp TTCSSSBHH--HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cCCccchHH--HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 1223222 234567889999999999999999998877643
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00084 Score=66.51 Aligned_cols=114 Identities=17% Similarity=0.093 Sum_probs=77.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|+|+ |.||..++.+|.+.|++ .++..+|.+.. +. .. ++..+.|++|+.+....+|++++++|+.
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~~~~DvaIi~vp~~- 82 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGG---SE--VH---GVPVYDSVKEALAEHPEINTSIVFVPAP- 82 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHCTTCCEEEECCCGG-
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCC---ce--EC---CEeeeCCHHHHhhcCCCCCEEEEecCHH-
Confidence 356888898 99999999999999998 55666665310 00 11 4678899999886321289999999995
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChh-hHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~-~t~~~~~~l~~~gi~~v~~ 131 (505)
.+.+++++....- ...+|+ .++..+. +..++.+.+++.|+.+++.
T Consensus 83 ~~~~~v~ea~~~G-i~~vVi-~t~G~~~~~~~~l~~~A~~~gi~viGP 128 (297)
T 2yv2_A 83 FAPDAVYEAVDAG-IRLVVV-ITEGIPVHDTMRFVNYARQKGATIIGP 128 (297)
T ss_dssp GHHHHHHHHHHTT-CSEEEE-CCCCCCHHHHHHHHHHHHHHTCEEECS
T ss_pred HHHHHHHHHHHCC-CCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEEcC
Confidence 6677776666532 222443 4444443 4556677777789887753
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.001 Score=67.40 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.+|..+|..+.+.|.+|.++|+++++ .+..+.. +.+.. +.+++... .+|+++-|-..+ .+
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~------ga~~v-~~~ell~~--~~DIliP~A~~~-~I 244 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVAL------GHTAV-ALEDVLST--PCDVFAPCAMGG-VI 244 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHT------TCEEC-CGGGGGGC--CCSEEEECSCSC-CB
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhc------CCEEe-ChHHhhcC--ccceecHhHHHh-hc
Confidence 57999999999999999999999999999999876 3333321 12332 55666551 389998553222 22
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
. .+-++.+. .++|++++|....+.+ ..+.+.++|+.++
T Consensus 245 ~---~~~~~~lk-~~iVie~AN~p~t~~e-A~~~L~~~gIlv~ 282 (355)
T 1c1d_A 245 T---TEVARTLD-CSVVAGAANNVIADEA-ASDILHARGILYA 282 (355)
T ss_dssp C---HHHHHHCC-CSEECCSCTTCBCSHH-HHHHHHHTTCEEC
T ss_pred C---HHHHhhCC-CCEEEECCCCCCCCHH-HHHHHHhCCEEEE
Confidence 2 22234443 6899999988654323 3577888887665
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0016 Score=64.40 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=64.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.+|.++|..|+.++. ++.+||+++++++- +...... ....++....+.+++ +.+|+|+++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~----~~aDvVvit 76 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL----KGSEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGG----TTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHh----CCCCEEEEe
Confidence 689999999999999999998875 79999999876432 2221100 000134455566543 339999997
Q ss_pred cCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.-.+ . .++++.+++..+. ++.+++-.||-.
T Consensus 77 AG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPv 121 (294)
T 2x0j_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPM 121 (294)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcc
Confidence 7322 1 2444556666654 567777777743
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00012 Score=69.12 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=52.8
Q ss_pred CCcEEEEcccHHHHHHHHH--HHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALN--VAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~--La~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
..+|+|||+|.+|..++.. +...|+++. ++|.++++....... .++...++++++++. .|++++++|+
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~eli~~---~D~ViIAvPs 155 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGG------VPVYNLDDLEQHVKD---ESVAILTVPA 155 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETT------EEEEEGGGHHHHCSS---CCEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcC------CeeechhhHHHHHHh---CCEEEEecCc
Confidence 3589999999999999994 445688866 679999875432211 124456677787765 4999999998
Q ss_pred CchHHHHHHHHhh
Q 010652 83 GSPVDQTIAALSE 95 (505)
Q Consensus 83 ~~~v~~vl~~l~~ 95 (505)
. ...++++.+..
T Consensus 156 ~-~~~ei~~~l~~ 167 (215)
T 2vt3_A 156 V-AAQSITDRLVA 167 (215)
T ss_dssp H-HHHHHHHHHHH
T ss_pred h-hHHHHHHHHHH
Confidence 4 45566666554
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00061 Score=71.63 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=69.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++++|+|+|.+|..+|+.|+..|.+|.++|+++.+.++....+ + ...+++++... +|+|+.+......+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g-------~-dv~~lee~~~~---aDvVi~atG~~~vl 334 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEG-------L-QVLTLEDVVSE---ADIFVTTTGNKDII 334 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------C-EECCGGGTTTT---CSEEEECSSCSCSB
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhC-------C-ccCCHHHHHHh---cCEEEeCCCChhhh
Confidence 5799999999999999999999999999999998877666543 2 23567777665 99999877554322
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
. ......+.++.+|++.+...
T Consensus 335 ~---~e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 335 M---LDHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp C---HHHHTTSCTTEEEEESSSTT
T ss_pred h---HHHHHhcCCCeEEEEcCCCC
Confidence 2 33567788999999988753
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00051 Score=72.31 Aligned_cols=86 Identities=15% Similarity=0.247 Sum_probs=59.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
.|||-|+|+|.+|..+|+.|.+.||+|++.|+++++++++.+..... -+....+-.++++ .+++||.++.++++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~---~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~- 78 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLR---VVNGHASHPDVLHEAGAQDADMLVAVTNT- 78 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCE---EEESCTTCHHHHHHHTTTTCSEEEECCSC-
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcE---EEEEcCCCHHHHHhcCCCcCCEEEEEcCC-
Confidence 47999999999999999999999999999999999998887542110 1233333334433 35679988766665
Q ss_pred chHHHHHHHHhh
Q 010652 84 SPVDQTIAALSE 95 (505)
Q Consensus 84 ~~v~~vl~~l~~ 95 (505)
..+.-++-.++.
T Consensus 79 De~Nl~~~~~Ak 90 (461)
T 4g65_A 79 DETNMAACQVAF 90 (461)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444444434443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0021 Score=64.45 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=65.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCC----hhHHHH----HHHhh-cccCCCCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRT----TSKVDE----TLDRA-HREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~----~~~~~~----~~~~~-~~~g~~~i~~~~s~~e~v~ 68 (505)
.|||+|+|+ |.+|.+++..|+..|+ +|.++|++ +++.+. +.... ...+ ++....++.+.++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~--~i~~~~~~~~al~ 82 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLA--GMTAHADPMTAFK 82 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEE--EEEEESSHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccC--cEEEecCcHHHhC
Confidence 469999997 9999999999999886 79999999 554432 22210 0000 3455567777666
Q ss_pred hcCCCcEEEEecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 69 SIQRPRSVIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 69 ~l~~advIil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+ +|+||++...+. .++++++.+..+..+..++|..||-
T Consensus 83 ~---aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNP 135 (329)
T 1b8p_A 83 D---ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNP 135 (329)
T ss_dssp T---CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred C---CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence 5 999999864321 1333445555543356688888763
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00064 Score=67.83 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--CCCcE-EEEeCChhH-HHHHHHhhcccCCCCee-eeCCHHHHHhh--cCCCcEEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAE--KGFPI-SVYNRTTSK-VDETLDRAHREGQLPLT-GHYTPRDFVLS--IQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~--~G~~V-~v~dr~~~~-~~~~~~~~~~~g~~~i~-~~~s~~e~v~~--l~~advIil 78 (505)
+.+|||||+|.||..++..+.+ .+.++ .++|+++++ ..++.+.. ++. ..++.+++++. ....|+|++
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~------g~~~~~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc------CCCcccCCHHHHHhccCCCCCcEEEE
Confidence 4689999999999999999965 35554 478999887 45554332 122 34566777653 234799999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++|.. ...+.....+.. .+|..|++.+..
T Consensus 78 atp~~-~h~~~a~~al~a-~~Gk~Vi~ekp~ 106 (312)
T 1nvm_B 78 ATSAS-AHVQNEALLRQA-KPGIRLIDLTPA 106 (312)
T ss_dssp CSCHH-HHHHHHHHHHHH-CTTCEEEECSTT
T ss_pred CCChH-HHHHHHHHHHHh-CCCCEEEEcCcc
Confidence 99964 333333333221 238888887654
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00082 Score=67.71 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=61.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhc-c-cCCC----------CeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAH-R-EGQL----------PLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V-~v~dr~~~~~~~~~~~~~-~-~g~~----------~i~~~~s~~e~v~~l~ 71 (505)
+.||||+|+|.||+.+++.|.++ +.+| .+.|+++++...+.+... . .+.+ .+....+++++..+
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~-- 79 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK-- 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT--
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccC--
Confidence 46999999999999999999876 3465 467988877766654321 0 0000 12345678888765
Q ss_pred CCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeC
Q 010652 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~ 106 (505)
.|+|++|+|.+...+.. . .++..|..||..
T Consensus 80 -vDvV~~aTp~~~h~~~a-~---~~l~aGk~Vi~s 109 (334)
T 2czc_A 80 -VDIIVDATPGGIGAKNK-P---LYEKAGVKAIFQ 109 (334)
T ss_dssp -CSEEEECCSTTHHHHHH-H---HHHHHTCEEEEC
T ss_pred -CCEEEECCCccccHHHH-H---HHHHcCCceEee
Confidence 99999999997433332 2 333456666643
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00096 Score=62.30 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=50.2
Q ss_pred CCc-EEEEc-ccHHHHHHHHHHH-hCCCcEEEEeCChh-HHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEE
Q 010652 6 LSR-IGLAG-LAVMGQNLALNVA-EKGFPISVYNRTTS-KVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~-IgiIG-lG~mG~~lA~~La-~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIi 77 (505)
||| |.|.| .|.+|..++..|+ +.|++|++.+|+++ +.+++..... ++.. ..+.+++.+.++++|+||
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHE-----RVTVIEGSFQNPGXLEQAVTNAEVVF 78 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTST-----TEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCC-----ceEEEECCCCCHHHHHHHHcCCCEEE
Confidence 345 99999 5999999999999 89999999999998 7666542211 1111 123444444444588888
Q ss_pred EecCC
Q 010652 78 ILVKA 82 (505)
Q Consensus 78 l~vp~ 82 (505)
.+...
T Consensus 79 ~~ag~ 83 (221)
T 3r6d_A 79 VGAME 83 (221)
T ss_dssp ESCCC
T ss_pred EcCCC
Confidence 87754
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0017 Score=64.79 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=76.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC---hhHHHHHHHhhcccCCCCeee--eCCH---HHHHhhcCCCcEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT---TSKVDETLDRAHREGQLPLTG--HYTP---RDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~---~~~~~~~~~~~~~~g~~~i~~--~~s~---~e~v~~l~~advIi 77 (505)
.++.|+|+|-+|++++..|++.|. +|+++||+ .++.+++.++........+.. ..+. .+.+.. +|+||
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~---~DiII 225 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS---ADILT 225 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH---CSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC---ceEEE
Confidence 579999999999999999999998 79999999 888777765322110001222 2343 344555 99999
Q ss_pred EecCCCchHHHHHHHH---hhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 78 ILVKAGSPVDQTIAAL---SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l---~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
-++|.+-.-..- ..+ ...+.++.+|+|.--... .| .+.+..+++|...++
T Consensus 226 NaTp~Gm~~~~~-~~~~~~~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~ 278 (312)
T 3t4e_A 226 NGTKVGMKPLEN-ESLIGDVSLLRPELLVTECVYNPH-MT-KLLQQAQQAGCKTID 278 (312)
T ss_dssp ECSSTTSTTSTT-CCSCCCGGGSCTTCEEEECCCSSS-SC-HHHHHHHHTTCEEEC
T ss_pred ECCcCCCCCCCC-CcccCCHHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCCeEEC
Confidence 999987310000 011 134678899999866543 34 344445667766553
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0038 Score=61.88 Aligned_cols=97 Identities=10% Similarity=0.111 Sum_probs=59.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeC--ChhHHHHHH----HhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGF--PISVYNR--TTSKVDETL----DRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~--~V~v~dr--~~~~~~~~~----~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|||+|+| .|.+|.+++..|+..|+ ++.++|+ ++++++... ...... .++....+..+..+ ++|+||
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~--~~~~v~~~~~~a~~---~aDvVi 75 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYD--SNTRVRQGGYEDTA---GSDVVV 75 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTT--CCCEEEECCGGGGT---TCSEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhC--CCcEEEeCCHHHhC---CCCEEE
Confidence 5899999 99999999999998886 6889999 876653321 110000 01222222233344 499999
Q ss_pred EecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++...+. .++++++.+... .+..+|+..||-
T Consensus 76 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNP 121 (303)
T 1o6z_A 76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNP 121 (303)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSS
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCCh
Confidence 9875432 233444555554 456677766553
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00066 Score=65.38 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=71.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.|+|+++|+|.||+.+++. . ++++ .+|+ ++..++ ++..+++++++++. +|+|+.|.+. .
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel----------gv~a~~d~d~lla~---pD~VVe~A~~-~ 71 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI----------PGVVRLDEFQVPSD---VSTVVECASP-E 71 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC----------SSSEECSSCCCCTT---CCEEEECSCH-H
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc----------CceeeCCHHHHhhC---CCEEEECCCH-H
Confidence 3799999999999999998 4 8886 5777 332221 24567888888754 9999999754 3
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhh---HHHHHHHHHHcCCeE-EcCCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLN---TERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~---t~~~~~~l~~~gi~~-v~~pvsgg 136 (505)
+++ +.+.+.|..|.-++-.|.....+ .+++.+..++.|..+ +..+..+|
T Consensus 72 av~---e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~G 124 (253)
T 1j5p_A 72 AVK---EYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGG 124 (253)
T ss_dssp HHH---HHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCC
T ss_pred HHH---HHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccc
Confidence 343 33566677888888888764323 233344444445554 44555555
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0016 Score=61.56 Aligned_cols=85 Identities=9% Similarity=0.149 Sum_probs=55.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEec
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~v 80 (505)
+|++|.|.| .|.+|..++..|++.| ++|.+++|++++.+.+..... .+.. ..+.+++.+.++++|+||.+.
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~-----~~~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNS-----QIIMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTE-----EEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCc-----EEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence 345799999 6999999999999999 899999999886543322111 0111 124555544455699999887
Q ss_pred CCCchHHHHHHHHhh
Q 010652 81 KAGSPVDQTIAALSE 95 (505)
Q Consensus 81 p~~~~v~~vl~~l~~ 95 (505)
... ......+.+++
T Consensus 97 ~~~-~~~~~~~~~~~ 110 (236)
T 3qvo_A 97 TGE-DLDIQANSVIA 110 (236)
T ss_dssp CST-THHHHHHHHHH
T ss_pred CCC-chhHHHHHHHH
Confidence 654 33333344444
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00056 Score=68.84 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=73.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhC------C--CcE-EEEeCChhHHHH------HHHhhcccCCCCe-eeeC---CHHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK------G--FPI-SVYNRTTSKVDE------TLDRAHREGQLPL-TGHY---TPRDFV 67 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~------G--~~V-~v~dr~~~~~~~------~~~~~~~~g~~~i-~~~~---s~~e~v 67 (505)
.+|||||+|.||+.++..|.++ | ++| .++|+++++.++ +.+..... .+ ..++ ++++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKG---SLDSLEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTT---CGGGCCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccC---CcccccCCCCCHHHHh
Confidence 6899999999999999999764 2 455 477998765332 11110000 12 1334 899988
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC-hhhHHHHHHHHHHcCCeE-EcCCCCCC
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~t~~~~~~l~~~gi~~-v~~pvsgg 136 (505)
. ...|+|+.|+|.....+...+.....|..|.-|+...... .....++.+..+++|+.| .++.+.+|
T Consensus 84 -~-~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~g 152 (331)
T 3c8m_A 84 -A-RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGG 152 (331)
T ss_dssp -H-SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred -C-CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 4 3489999999984101122233444566788887653321 123344555556667654 34444433
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00015 Score=72.28 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=62.3
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee---e--CCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG---H--YTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~---~--~s~~e~v~~l~~advIil~v 80 (505)
.++.|||.|.| |.++|..|...|.+|+++||+..+..+......... ...+. + .++++.+.. +|+||.++
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~-~~~t~~~~t~~~~L~e~l~~---ADIVIsAt 253 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNK-HHVEDLGEYSEDLLKKCSLD---SDVVITGV 253 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCC-CEEEEEEECCHHHHHHHHHH---CSEEEECC
T ss_pred CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhc-ccccccccccHhHHHHHhcc---CCEEEECC
Confidence 57999999975 999999999999999999998443211111100000 00111 1 456777776 99999999
Q ss_pred CCCch-HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 81 KAGSP-VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~~-v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+.. +. ...+++|.+|||.+..
T Consensus 254 g~p~~vI~------~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 254 PSENYKFP------TEYIKEGAVCINFACT 277 (320)
T ss_dssp CCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred CCCcceeC------HHHcCCCeEEEEcCCC
Confidence 88643 21 1235789999999775
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=64.34 Aligned_cols=74 Identities=20% Similarity=0.399 Sum_probs=59.7
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.| .+|.++|..|...|.+|++++++. .++++.++. +|+||.+++.+..
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 206 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT---------------------KDIGSMTRS---SKIVVVAVGRPGF 206 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHH---SSEEEECSSCTTC
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------ccHHHhhcc---CCEEEECCCCCcc
Confidence 579999997 589999999999999999998642 366777777 9999999988643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 207 I~------~~~vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 207 LN------REMVTPGSVVIDVGINY 225 (276)
T ss_dssp BC------GGGCCTTCEEEECCCEE
T ss_pred cc------HhhccCCcEEEEeccCc
Confidence 32 14578999999998754
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0066 Score=60.44 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=59.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhC-C--CcEEEEeCChh---HHHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEE
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEK-G--FPISVYNRTTS---KVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~-G--~~V~v~dr~~~---~~~~~~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIi 77 (505)
|||+||| +|.+|.+++..|+.+ + .++.++|+++. ...++... ... .++... ++..+..++ +|+||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~-~~~--~~v~~~~~~~~~~~~~~---aDivi 74 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHI-PTA--VKIKGFSGEDATPALEG---ADVVL 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTS-CSS--EEEEEECSSCCHHHHTT---CSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCC-CCC--ceEEEecCCCcHHHhCC---CCEEE
Confidence 5899999 899999999999876 5 47999999871 22222221 100 023322 234444454 99999
Q ss_pred EecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++...+. .++++.+.+..+ .++.+++..||-
T Consensus 75 i~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNP 120 (312)
T 3hhp_A 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNP 120 (312)
T ss_dssp ECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSC
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCc
Confidence 9874431 133344555555 466778888764
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00099 Score=57.02 Aligned_cols=103 Identities=13% Similarity=0.025 Sum_probs=75.2
Q ss_pred CCcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGl----G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|+|||+ +..|..+.++|.+.||+|+..|...+.+ . +...+.|++++-+ .|++++++|
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i---------~---G~~~y~sl~dlp~----vDlavi~~p 67 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV---------L---GKTIINERPVIEG----VDTVTLYIN 67 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE---------T---TEECBCSCCCCTT----CCEEEECSC
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC---------C---CeeccCChHHCCC----CCEEEEEeC
Confidence 357999997 6799999999999999999888764321 1 3456667766532 799999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+ +.+.++++++...-.+ .+|+..+.. .+++.+.+++.|+++++
T Consensus 68 ~-~~v~~~v~e~~~~g~k-~v~~~~G~~----~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 68 P-QNQLSEYNYILSLKPK-RVIFNPGTE----NEELEEILSENGIEPVI 110 (122)
T ss_dssp H-HHHGGGHHHHHHHCCS-EEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred H-HHHHHHHHHHHhcCCC-EEEECCCCC----hHHHHHHHHHcCCeEEC
Confidence 8 4677888877764333 466654442 24667777888999885
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0047 Score=64.71 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=68.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh----HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCC-CcEEEEe--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS----KVDETLDRAHREGQLPLTGHYTPRDFVLSIQR-PRSVIIL-- 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~----~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~-advIil~-- 79 (505)
++|.|||+|..|.+.|+.|++.|++|+++|+++. ..+.+.+.+. .+.....+++... . +|+||.+
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi-----~~~~g~~~~~~~~---~~~d~vv~spg 81 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGI-----KVVCGSHPLELLD---EDFCYMIKNPG 81 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTC-----EEEESCCCGGGGG---SCEEEEEECTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCC-----EEEECCChHHhhc---CCCCEEEECCc
Confidence 5899999999999999999999999999998642 3445554432 1222233343332 2 6888886
Q ss_pred cCCCch-HHHHHH---------HHhhccCCCC-EEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 80 VKAGSP-VDQTIA---------ALSEHMSPGD-CIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 80 vp~~~~-v~~vl~---------~l~~~l~~g~-iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+|.+.+ +....+ +++..+.+.. |-|.+|++...++.-+...+...|..
T Consensus 82 i~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~ 140 (451)
T 3lk7_A 82 IPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQR 140 (451)
T ss_dssp SCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 444332 222221 2222222334 45555666655555566677777753
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0007 Score=66.26 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=60.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHH-hCCCcEE-EEeCChhHHH--HHHHh-hcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGL-AVMGQNLALNVA-EKGFPIS-VYNRTTSKVD--ETLDR-AHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La-~~G~~V~-v~dr~~~~~~--~~~~~-~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+|||+|+|+ |.||+.++..+. ..|++|+ ++|+++++.. ++.+. +.. ..++..+++++++++. +|+||-+
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~--~~~v~~~~dl~~~l~~---~DvVIDf 79 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG--KTGVTVQSSLDAVKDD---FDVFIDF 79 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS--CCSCCEESCSTTTTTS---CSEEEEC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC--cCCceecCCHHHHhcC---CCEEEEc
Confidence 469999998 999999999877 4578876 7898764310 00000 000 0134556777777654 9999966
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
.++ ....+.+. ..+..|.-+|-.++....
T Consensus 80 t~p-~~~~~~~~---~a~~~G~~vVigTtG~~~ 108 (273)
T 1dih_A 80 TRP-EGTLNHLA---FCRQHGKGMVIGTTGFDE 108 (273)
T ss_dssp SCH-HHHHHHHH---HHHHTTCEEEECCCCCCH
T ss_pred CCh-HHHHHHHH---HHHhCCCCEEEECCCCCH
Confidence 543 23333333 344466667776665433
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0028 Score=58.64 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=48.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHH--HHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR--DFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~--e~v~~l~~advIil~vp~ 82 (505)
|||.|+|. |.+|+.++..|+++|++|++.+|++++.+.+. .+. .+.. .|+. +. +.+.++|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~-----~~~~-~D~~d~~~-~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDI-----NILQ-KDIFDLTL-SDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSS-----EEEE-CCGGGCCH-HHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCC-----eEEe-ccccChhh-hhhcCCCEEEECCcC
Confidence 57999995 99999999999999999999999998876653 111 1111 1211 01 333459999998855
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.018 Score=56.71 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=77.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.+.|.+.+..+..++|.+.+.++. ++|.+++.++++.| ..+|++++.....+-+.+.. +-
T Consensus 173 g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~~ 239 (303)
T 3g0o_A 173 GAGSTVKIIHQLLAGVHIAAAAEAMALAARA------GIPLDVMYDVVTHA-AGNSWMFENRMQHVVDGDYT------PR 239 (303)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCCHHHHHHHHHHHTTCCC------CS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccCCHHHHhhhHHHhcCCCC------CC
Confidence 6788999999999999999999999988743 39999999999987 45788877655444332211 11
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (505)
|. +.....+++.++..|-+.|+|+|.+.++...|..
T Consensus 240 ~~--~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~ 275 (303)
T 3g0o_A 240 SA--VDIFVKDLGLVADTAKALRFPLPLASTALNMFTS 275 (303)
T ss_dssp SB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 21 1123445678999999999999999998886653
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0013 Score=67.08 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=68.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC----hhH----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT----TSK----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~----~~~----~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
..||.|+|.|.+|..+|+.|...|. +|+++||+ .++ +..+.+.-+..- .......+++|+++. +|++
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~-~~~~~~~~L~eav~~---ADVl 267 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARIT-NPERLSGDLETALEG---ADFF 267 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTS-CTTCCCSCHHHHHTT---CSEE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhh-hccCchhhHHHHHcc---CCEE
Confidence 4689999999999999999999998 79999998 554 222222111110 011224578888887 9999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhH
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t 114 (505)
|-+..++... +++...+.++.+|+++||-.|+-+
T Consensus 268 IG~Sap~l~t----~emVk~Ma~~pIIfalSNPt~E~~ 301 (388)
T 1vl6_A 268 IGVSRGNILK----PEWIKKMSRKPVIFALANPVPEID 301 (388)
T ss_dssp EECSCSSCSC----HHHHTTSCSSCEEEECCSSSCSSC
T ss_pred EEeCCCCccC----HHHHHhcCCCCEEEEcCCCCCCCC
Confidence 8876533323 344444667889999999665443
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.003 Score=63.26 Aligned_cols=110 Identities=10% Similarity=0.082 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHh-hcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVL-SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~-s~~e~v~-~l~~advIil~vp~~~ 84 (505)
++|.|+|.|.+|..++..|.+.|+ |.+.|+++++++ +.+.+.. -+.... +++.+.+ .++++|.++++++++.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~----~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~ 189 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGAN----FVHGDPTRVSDLEKANVRGARAVIVDLESDS 189 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCE----EEESCTTSHHHHHHTCSTTEEEEEECCSSHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcE----EEEeCCCCHHHHHhcChhhccEEEEcCCccH
Confidence 479999999999999999999999 999999999988 6654321 022222 3333332 3567999999998753
Q ss_pred hHHHHHHHHhhccCCC-CEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 85 PVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
. .-.+-..+..+.+. .+++-..+. ... +.+...|+..+
T Consensus 190 ~-n~~~~~~ar~~~~~~~iiar~~~~--~~~----~~l~~~G~d~v 228 (336)
T 1lnq_A 190 E-TIHCILGIRKIDESVRIIAEAERY--ENI----EQLRMAGADQV 228 (336)
T ss_dssp H-HHHHHHHHHTTCTTSEEEEECSSG--GGH----HHHHHTTCSEE
T ss_pred H-HHHHHHHHHHHCCCCeEEEEECCH--HHH----HHHHHcCCCEE
Confidence 2 22223344445555 556555432 222 23345576554
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0059 Score=58.72 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~ 39 (505)
.+|.|||+|.+|..++.+|++.|. +|+++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 579999999999999999999997 899999987
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00033 Score=65.87 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=55.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~-~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|.+|..++..+.. .|+++. ++|.++++....... .++...++++++++. +.|.|++|+|..
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~ell~~--~ID~ViIA~Ps~ 151 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRG------GVIEHVDLLPQRVPG--RIEIALLTVPRE 151 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETT------EEEEEGGGHHHHSTT--TCCEEEECSCHH
T ss_pred CCEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcC------CeeecHHhHHHHHHc--CCCEEEEeCCch
Confidence 3579999999999999986322 277755 679998875432211 124456778888765 589999999985
Q ss_pred chHHHHHHHHhh
Q 010652 84 SPVDQTIAALSE 95 (505)
Q Consensus 84 ~~v~~vl~~l~~ 95 (505)
...++.+.+..
T Consensus 152 -~~~ei~~~l~~ 162 (211)
T 2dt5_A 152 -AAQKAADLLVA 162 (211)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hHHHHHHHHHH
Confidence 44556555543
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.031 Score=53.97 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=102.0
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
++...++-.|+++. +|++|+-+|-|...-.+++.+++++++|.||.++.|.++.......+.+.++.+.+..+...
T Consensus 128 GVkVtsDD~EAvk~---AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPa- 203 (358)
T 2b0j_A 128 GLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPG- 203 (358)
T ss_dssp TCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCS-
T ss_pred CcEeecchHHHhcC---CCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCC-
Confidence 57788888899987 99999999999878889999999999999999999999887777776666555555543211
Q ss_pred ChhhhhcCCcccC-C-CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhC
Q 010652 136 GEEGARHGPSLMP-G-GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 136 g~~~a~~G~~i~~-g-g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.++. .|.+... | .++|..+++-++.++.+ +..+.+-..-.+...-|. ..+.+...+.+.+-+....+..
T Consensus 204 aVPgt-~Gq~~~g~~yAtEEqIeklveLaksa~------k~ay~vPAdl~SpV~DMg-s~vTAv~~AGiL~Y~~~vtkIl 275 (358)
T 2b0j_A 204 CVPEM-KGQVYIAEGYASEEAVNKLYEIGKIAR------GKAFKMPANLIGPVCDMC-SAVTATVYAGLLAYRDAVTKIL 275 (358)
T ss_dssp SCTTT-CCCEEEEESSSCHHHHHHHHHHHHHHH------SCEEEEEHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCC-CCccccccccCCHHHHHHHHHHHHHhC------CCeEecchhhccchhhhH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 11121 3442222 1 48899999999999999 667766433333333332 2333445556666666665554
Q ss_pred CCC
Q 010652 214 GLS 216 (505)
Q Consensus 214 ~l~ 216 (505)
|.+
T Consensus 276 gAP 278 (358)
T 2b0j_A 276 GAP 278 (358)
T ss_dssp CCC
T ss_pred cCc
Confidence 344
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0022 Score=63.13 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=57.7
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHH--HHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR--DFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~--e~v~~l~~advIil~vp~~ 83 (505)
.++.|||.|. +|.++|..|.+.|.+|+++++... +++ +.+.. +|+||.+++.+
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~---------------------~l~l~~~~~~---ADIVI~Avg~p 221 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS---------------------TEDMIDYLRT---ADIVIAAMGQP 221 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC---------------------HHHHHHHHHT---CSEEEECSCCT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC---------------------Cchhhhhhcc---CCEEEECCCCC
Confidence 5799999876 899999999999999999997432 223 55565 99999999986
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
..+.. ..+++|.+|||.+...
T Consensus 222 ~~I~~------~~vk~GavVIDvgi~~ 242 (300)
T 4a26_A 222 GYVKG------EWIKEGAAVVDVGTTP 242 (300)
T ss_dssp TCBCG------GGSCTTCEEEECCCEE
T ss_pred CCCcH------HhcCCCcEEEEEeccC
Confidence 43321 3478999999998753
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0062 Score=56.52 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=48.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHH--HHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD--FVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e--~v~~l~~advIil~vp~ 82 (505)
|||.|.|. |.+|+.++..|+++|++|.+.+|++++...+...+.. +. ..|+.+ . +.+.++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~-----~~-~~D~~d~~~-~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVA-----TL-VKEPLVLTE-ADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSE-----EE-ECCGGGCCH-HHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCce-----EE-ecccccccH-hhcccCCEEEECCcc
Confidence 57999997 9999999999999999999999999887765432211 11 112211 1 333458999988754
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0046 Score=62.39 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=59.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhh--cccCCC------------CeeeeCCHHHHHhh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRA--HREGQL------------PLTGHYTPRDFVLS 69 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~--~~~g~~------------~i~~~~s~~e~v~~ 69 (505)
|.||||+|+|.+|+.+++.|.++ +++|. +.|++++....+.+.. ...|.+ .+....+++++...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 36999999999999999999887 57755 5577766655444331 000000 11122233333333
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 70 IQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+|+|+.|.|.+. ..+..+ ..++..|..||+.+.
T Consensus 82 ---vDiV~eatg~~~-s~~~a~--~~~l~aG~~VI~sap 114 (343)
T 2yyy_A 82 ---ADIVVDGAPKKI-GKQNLE--NIYKPHKVKAILQGG 114 (343)
T ss_dssp ---CSEEEECCCTTH-HHHHHH--HTTTTTTCEEEECTT
T ss_pred ---CCEEEECCCccc-cHHHHH--HHHHHCCCEEEECCC
Confidence 899999998863 232222 356778888887443
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.003 Score=63.60 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=60.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhc-c-cCC----------CCeeeeCCHHHHHhhcCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAH-R-EGQ----------LPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~-~-~g~----------~~i~~~~s~~e~v~~l~~ 72 (505)
.||||+|+|.||+.+++.|.++ +++|. +.|++++...+...... . .+. .++....+++++...
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~--- 78 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE--- 78 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT---
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC---
Confidence 5899999999999999999874 56654 56887665544443210 0 000 012222356666655
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+|+|+.|+|.+. ..+.....+ ..|..|||.+..
T Consensus 79 vDvV~~atp~~~-~~~~a~~~l---~aG~~VId~sp~ 111 (337)
T 1cf2_P 79 ADIVIDCTPEGI-GAKNLKMYK---EKGIKAIFQGGE 111 (337)
T ss_dssp CSEEEECCSTTH-HHHHHHHHH---HHTCCEEECTTS
T ss_pred CCEEEECCCchh-hHHHHHHHH---HcCCEEEEecCC
Confidence 999999999874 334444333 346668887776
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00052 Score=64.43 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=56.8
Q ss_pred CCcEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChh-HHHH-HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNV--AEKGFPIS-VYNRTTS-KVDE-TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~L--a~~G~~V~-v~dr~~~-~~~~-~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..+++|||+|.+|..++..+ .+.|+++. ++|.+++ +... ... + ..+...++++++++. .+.|++++|+
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~-G-----vpV~~~~dL~~~v~~-~~Id~vIIAv 156 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTED-G-----IPVYGISTINDHLID-SDIETAILTV 156 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTT-C-----CBEEEGGGHHHHC-C-CSCCEEEECS
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeEC-C-----eEEeCHHHHHHHHHH-cCCCEEEEec
Confidence 35799999999999999873 45677755 6799988 6432 111 1 234445677777764 2489999999
Q ss_pred CCCchHHHHHHHHhh
Q 010652 81 KAGSPVDQTIAALSE 95 (505)
Q Consensus 81 p~~~~v~~vl~~l~~ 95 (505)
|+. ...++.+.+.+
T Consensus 157 Ps~-~aq~v~d~lv~ 170 (212)
T 3keo_A 157 PST-EAQEVADILVK 170 (212)
T ss_dssp CGG-GHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHH
Confidence 995 45667776654
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00076 Score=67.85 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=58.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---------CcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG---------FPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G---------~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
+++|||||+|.||+.++..+.++. .+| .++||++++.+.+ . ....++|+++++ . .|+
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~-----~----~~~~~~d~~~ll-~---iDv 69 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAI-----P----QELLRAEPFDLL-E---ADL 69 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSS-----C----GGGEESSCCCCT-T---CSE
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhcc-----C----cccccCCHHHHh-C---CCE
Confidence 368999999999999999998763 454 4779987643221 0 013567888877 4 999
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeC
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~ 106 (505)
|+.|+|......+.+ ...|..|+-|+..
T Consensus 70 Vve~t~~~~~a~~~~---~~AL~aGKhVVta 97 (332)
T 2ejw_A 70 VVEAMGGVEAPLRLV---LPALEAGIPLITA 97 (332)
T ss_dssp EEECCCCSHHHHHHH---HHHHHTTCCEEEC
T ss_pred EEECCCCcHHHHHHH---HHHHHcCCeEEEC
Confidence 999999864333333 3345567767654
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.011 Score=59.70 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=59.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEE-EEeCChhHHHHHHHhhccc--C---------CCCeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG-FPIS-VYNRTTSKVDETLDRAHRE--G---------QLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G-~~V~-v~dr~~~~~~~~~~~~~~~--g---------~~~i~~~~s~~e~v~~l~~a 73 (505)
.||||+|+|.||+.+++.|.++. .+|. +.|++++............ . ..++....+++++.+. +
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~---v 78 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT---S 78 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH---C
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcC---C
Confidence 48999999999999999998764 4654 6788876655544331000 0 0011122244454445 8
Q ss_pred cEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
|+|+.|+|... ..+.... ++..|..+||.|..
T Consensus 79 DvV~~aTp~~~-s~~~a~~---~~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 79 DIVVDTTPNGV-GAQYKPI---YLQLQRNAIFQGGE 110 (340)
T ss_dssp SEEEECCSTTH-HHHHHHH---HHHTTCEEEECTTS
T ss_pred CEEEECCCCch-hHHHHHH---HHHcCCeEEEeCCC
Confidence 99999999863 3333333 33467778887765
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.027 Score=55.95 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=80.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.+.|.+.+..+..++|++.+.++. ++|.+++.++++.| -.+|++++.....+.+.... +-
T Consensus 193 g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~l~~~~~------~g 259 (320)
T 4dll_A 193 GSGQLTKLANQMIVGITIGAVAEALLFATKG------GADMAKVKEAITGG-FADSRVLQLHGQRMVERDFA------PR 259 (320)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCHHHHHHHHTTS-TTCBHHHHTHHHHHHTTCCC------CS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcc-cccCHHHHHhhhhhccCCCC------Cc
Confidence 6789999999999999999999999998853 39999999999988 46788888765555433211 11
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (505)
|.- .-...+++.++..|-+.|+|+|.+.++...|...
T Consensus 260 f~~--~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 296 (320)
T 4dll_A 260 ARL--SIQLKDMRNALATAQEIGFDAPITGLFEQLYAEG 296 (320)
T ss_dssp SBH--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 211 2234556789999999999999999998877643
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.018 Score=56.18 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=79.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchh
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.+.++.+|.+.|.+.+..+..++|++.+.++. ++|.+++.++++.| ...|++++.....+.+.+.. +
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 230 (287)
T 3pef_A 164 VGKGAEMKLVVNMVMGGMMACFCEGLALGEKA------GLATDAILDVIGAG-AMANPMFALKGGLIRDRNFA------P 230 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCC------C
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCC------C
Confidence 36788999999999999999999999998853 39999999999987 35788887766555443211 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (505)
-|. +.....+++.++..|-+.|+|+|.+.++...|..
T Consensus 231 ~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pef_A 231 AFP--LKHMQKDLRLAVALGDRVGQPLVASAAANELFKG 267 (287)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 222 2233445799999999999999999998876653
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.03 Score=53.64 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=52.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|||+|+|+ |.||+.++..+.+. |++|. ++|++. +++++.. ..+|+||-+.++.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~----------------------dl~~~~~--~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC----------------------CTHHHHH--TTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC----------------------CHHHHhc--cCCcEEEEccChH
Confidence 48999996 99999999998865 89876 567541 3444443 1289999776553
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhh
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 113 (505)
.+.+.+... +..|.-+|-++|+....
T Consensus 57 -a~~~~~~~a---~~~g~~~VigTTG~~~e 82 (245)
T 1p9l_A 57 -VVMGNLEFL---IDNGIHAVVGTTGFTAE 82 (245)
T ss_dssp -THHHHHHHH---HHTTCEEEECCCCCCHH
T ss_pred -HHHHHHHHH---HHcCCCEEEcCCCCCHH
Confidence 454444433 44566667777765443
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0036 Score=61.18 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=58.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 217 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHhccc---CCEEEECCCCCCC
Confidence 5799999876 79999999999999999998642 256666666 9999999987643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 218 I~------~~~vk~GavVIDvgi~~ 236 (285)
T 3l07_A 218 IT------ADMVKEGAVVIDVGINH 236 (285)
T ss_dssp BC------GGGSCTTCEEEECCCEE
T ss_pred CC------HHHcCCCcEEEEecccC
Confidence 32 14568999999997653
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0035 Score=61.23 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=58.8
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 216 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 216 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSSCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhhc---CCEEEECCCCCCc
Confidence 5799999876 79999999999999999998642 256666666 9999999987643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 217 I~------~~~vk~GavVIDVgi~~ 235 (285)
T 3p2o_A 217 LR------SDMVKEGVIVVDVGINR 235 (285)
T ss_dssp BC------GGGSCTTEEEEECCCEE
T ss_pred CC------HHHcCCCeEEEEeccCc
Confidence 32 14578999999998653
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0042 Score=58.48 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=51.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCH-HHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-REGQLPLTGHYTP-RDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~-~e~v~~l~~advIil~vp~ 82 (505)
.|+|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+...+. . +. ..|+ +++.+.++++|+||.+...
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~-----~~-~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD-----IV-VANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSE-----EE-ECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCce-----EE-EcccHHHHHHHHcCCCEEEECCCC
Confidence 468999997 999999999999999999999999998877665432 1 11 1121 3333334458998887754
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.004 Score=58.07 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=49.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~v 80 (505)
||+|.|.| .|.+|..++..|+++|++|++.+|++++.+.+.. ++.. ..+.+++.+.++++|+||.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENE--------HLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCT--------TEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccC--------ceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 57899999 5999999999999999999999999876433211 1111 124444444455689999887
Q ss_pred CC
Q 010652 81 KA 82 (505)
Q Consensus 81 p~ 82 (505)
..
T Consensus 76 ~~ 77 (227)
T 3dhn_A 76 NP 77 (227)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0048 Score=60.73 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 221 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------------------AHLDEEVNK---GDILVVATGQPEM 221 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc---------------------ccHHHHhcc---CCEEEECCCCccc
Confidence 5799999995 79999999999999999997442 356666666 9999999988643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 222 I~------~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 222 VK------GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp BC------GGGSCTTCEEEECCCBC
T ss_pred CC------HHHcCCCcEEEEccCCC
Confidence 22 12467999999998764
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0082 Score=63.29 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=47.7
Q ss_pred CcEEEEcccHHHHHH--HHHHHh------CCCcEEEEeCChhHHHHHHH---hhc-ccC-CCCeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGLAVMGQNL--ALNVAE------KGFPISVYNRTTSKVDETLD---RAH-REG-QLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGlG~mG~~l--A~~La~------~G~~V~v~dr~~~~~~~~~~---~~~-~~g-~~~i~~~~s~~e~v~~l~~a 73 (505)
|||+|||.|..|... ...++. .+-+|.++|+++++++.... ... ..+ ..++..+++.+++++. +
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g---A 77 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG---A 77 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT---C
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC---C
Confidence 589999999987653 333432 23479999999987653221 100 000 1257778899998887 9
Q ss_pred cEEEEec
Q 010652 74 RSVIILV 80 (505)
Q Consensus 74 dvIil~v 80 (505)
|+||+++
T Consensus 78 D~Vi~~~ 84 (477)
T 3u95_A 78 DFIINTA 84 (477)
T ss_dssp SEEEECC
T ss_pred CEEEECc
Confidence 9999986
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0051 Score=59.92 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=58.0
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++.|||.|.| |.++|..|.+. |.+|++++++. .++++.+.. +|+||.+++.+
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p 214 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------------------RDLPALTRQ---ADIVVAAVGVA 214 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSCCT
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------------------hHHHHHHhh---CCEEEECCCCC
Confidence 57999999975 99999999999 88999997553 355666665 99999999886
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
..+. ...+++|.+|||.+...
T Consensus 215 ~~I~------~~~vk~GavVIDVgi~r 235 (281)
T 2c2x_A 215 HLLT------ADMVRPGAAVIDVGVSR 235 (281)
T ss_dssp TCBC------GGGSCTTCEEEECCEEE
T ss_pred cccC------HHHcCCCcEEEEccCCC
Confidence 4321 12467899999998753
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0058 Score=59.72 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=58.6
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|+++++.. .++++.+.. +|+||.+++.+..
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------------------RDLADHVSR---ADLVVVAAGKPGL 217 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------------------cCHHHHhcc---CCEEEECCCCCCC
Confidence 5799999865 89999999999999999997532 256666676 9999999987643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 218 I~------~~~vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 218 VK------GEWIKEGAIVIDVGINR 236 (286)
T ss_dssp BC------GGGSCTTCEEEECCSCS
T ss_pred CC------HHHcCCCeEEEEecccc
Confidence 32 14578999999998654
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0065 Score=55.38 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=48.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|.|+|. |.+|..++..|+++|++|++.+|++++.+...... ..... ..+.+++.+.++++|+||.+...
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~ 77 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRP-----AHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCC-----SEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCc-----eEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence 68999997 99999999999999999999999987643211100 01111 12344444444558888887654
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0059 Score=59.70 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=58.8
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~l 215 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 215 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhcc---CCEEEECCCCcCc
Confidence 5799999996 69999999999999999997543 356666776 9999999998642
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 216 I~------~~~vk~GavVIDVgi~r 234 (288)
T 1b0a_A 216 IP------GDWIKEGAIVIDVGINR 234 (288)
T ss_dssp BC------TTTSCTTCEEEECCCEE
T ss_pred CC------HHHcCCCcEEEEccCCc
Confidence 21 12467899999998753
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0092 Score=60.04 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=58.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEE-EeC--ChhHHHHHHHhhcccCCC------------------Ceeee--C
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISV-YNR--TTSKVDETLDRAHREGQL------------------PLTGH--Y 61 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~v-~dr--~~~~~~~~~~~~~~~g~~------------------~i~~~--~ 61 (505)
++||||+|+|.+|+.+++.|.++ +++|.. .|+ +++....+.+.....|.+ .+... .
T Consensus 3 ~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 82 (337)
T 3e5r_O 3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR 82 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred ceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence 35999999999999999999886 566654 453 455554554211100000 11112 2
Q ss_pred CHHHHH-hhcCCCcEEEEecCCCchHHHHHHHHhhccCCCC--EEEeCCC
Q 010652 62 TPRDFV-LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGD--CIIDGGN 108 (505)
Q Consensus 62 s~~e~v-~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 108 (505)
+++++- .. .++|+||.|+|..... +... .++..|. +|||.+.
T Consensus 83 dp~~l~w~~-~~vDvV~eaTg~~~~~-e~a~---~~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 83 NPDEIPWAE-AGAEYVVESTGVFTDK-EKAA---AHLKGGAKKVVISAPS 127 (337)
T ss_dssp CGGGCCHHH-HTCSEEEECSSSCCSH-HHHT---HHHHTTCSEEEESSCC
T ss_pred ChHHccccc-cCCCEEEECCCchhhH-HHHH---HHHHcCCCEEEEecCC
Confidence 666541 00 1389999999987543 3333 3344566 8998876
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0037 Score=62.94 Aligned_cols=96 Identities=10% Similarity=0.121 Sum_probs=59.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEEEE-eCC----h-hHHHHHHHhhcccCCCCeeeeC--CHHHHHhhcCCCcE
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPISVY-NRT----T-SKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRS 75 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~-G~~V~v~-dr~----~-~~~~~~~~~~~~~g~~~i~~~~--s~~e~v~~l~~adv 75 (505)
|+||+|+| .|.+|..|.+.|.++ .+++... .++ . .++.+........ ..+...+ +.+++.++ +|+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~--~~~~v~~~~~~~~~~~~---~Dv 78 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGI--VELPLQPMSDISEFSPG---VDV 78 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTT--CCCBEEEESSGGGTCTT---CSE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCc--cceeEeccCCHHHHhcC---CCE
Confidence 46999999 599999999999985 4577655 333 1 1222221100000 0122222 45554344 999
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
||+|+|.+ ...+....+ +..|..|||.|+.+
T Consensus 79 vf~a~p~~-~s~~~~~~~---~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 79 VFLATAHE-VSHDLAPQF---LEAGCVVFDLSGAF 109 (337)
T ss_dssp EEECSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred EEECCChH-HHHHHHHHH---HHCCCEEEEcCCcc
Confidence 99999986 344454444 34789999999875
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0037 Score=63.40 Aligned_cols=95 Identities=12% Similarity=0.226 Sum_probs=58.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC-CcEEEEeCChh----HHHHHHHh--------hcccCCCCeeeeCCHHHHHh-hc
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKG-FPISVYNRTTS----KVDETLDR--------AHREGQLPLTGHYTPRDFVL-SI 70 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G-~~V~v~dr~~~----~~~~~~~~--------~~~~g~~~i~~~~s~~e~v~-~l 70 (505)
++||+|+| .|.+|+.+++.|.++. ++|...++++. ..+..... +... ..+. ..+++++.+ .
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~- 83 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKD--MVVI-PTDPKHEEFED- 83 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHT--CBCE-ESCTTSGGGTT-
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCcee--eEEE-eCCHHHHhcCC-
Confidence 36899999 8999999999998875 57766643221 12211100 0000 0111 125555544 4
Q ss_pred CCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+|+||+|+|.+ ...+....+. ..|..|||.|+.+
T Consensus 84 --~DvV~~atp~~-~~~~~a~~~~---~aG~~VId~s~~~ 117 (354)
T 1ys4_A 84 --VDIVFSALPSD-LAKKFEPEFA---KEGKLIFSNASAY 117 (354)
T ss_dssp --CCEEEECCCHH-HHHHHHHHHH---HTTCEEEECCSTT
T ss_pred --CCEEEECCCch-HHHHHHHHHH---HCCCEEEECCchh
Confidence 99999999985 3444444443 4688899998763
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0072 Score=56.12 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=50.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCC-HHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYT-PRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s-~~e~v~~l~~advIil~vp~ 82 (505)
|+|.|.| .|.+|..++..|+++|++|++.+|++++.+.+ .+. .+.. ..+ .+++.+.++++|+||.+...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~-----~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNV-----KAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTE-----EEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCc-----eEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 4799999 69999999999999999999999998764432 111 1111 123 55666666778999988755
Q ss_pred C
Q 010652 83 G 83 (505)
Q Consensus 83 ~ 83 (505)
.
T Consensus 74 ~ 74 (219)
T 3dqp_A 74 G 74 (219)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.036 Score=57.32 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=47.4
Q ss_pred CCcEEEEcccHH-HHHHHHHHHh--C---CCcEEEEeCChhHHHHHHHhh---cccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 6 LSRIGLAGLAVM-GQNLALNVAE--K---GFPISVYNRTTSKVDETLDRA---HREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 6 ~~~IgiIGlG~m-G~~lA~~La~--~---G~~V~v~dr~~~~~~~~~~~~---~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
++||+|||+|.. +..+...|+. . +.+|.++|+++++++...... .... .++..+.+.++.+++ ||+|
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~-~~v~~t~d~~~al~~---AD~V 77 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDR-FKVLISDTFEGAVVD---AKYV 77 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTS-SEEEECSSHHHHHTT---CSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCC-eEEEEeCCHHHHhCC---CCEE
Confidence 469999999884 2222334454 3 568999999998865422111 1100 145666787777776 9999
Q ss_pred EEecCCC
Q 010652 77 IILVKAG 83 (505)
Q Consensus 77 il~vp~~ 83 (505)
|++.-.+
T Consensus 78 iitagvg 84 (417)
T 1up7_A 78 IFQFRPG 84 (417)
T ss_dssp EECCCTT
T ss_pred EEcCCCC
Confidence 9998543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0056 Score=61.85 Aligned_cols=96 Identities=7% Similarity=0.145 Sum_probs=57.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||+|+| .|.+|+.+.+.|.++.. ++....+..+.-.++.+.... .+...+. ..++++ +.++|+||+|+|.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~----~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK----LEPADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG----CCCCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH----hcCCCEEEEcCCc
Confidence 46899999 69999999999998764 766554432221111110000 0000111 223332 3459999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ..+....+ +..|..|||.|+..
T Consensus 79 ~~-s~~~a~~~---~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 79 GV-FAREFDRY---SALAPVLVDLSADF 102 (345)
T ss_dssp TH-HHHTHHHH---HTTCSEEEECSSTT
T ss_pred HH-HHHHHHHH---HHCCCEEEEcCccc
Confidence 74 34444433 45788999999864
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.017 Score=56.89 Aligned_cols=128 Identities=11% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|||+|-.|..++.+|++.|. +++++|.+.=....+..........+..-.....+.+..+ .+++-+...+..-
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~i-NP~v~v~~~~~~l 114 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNI-NPDVLFEVHNYNI 114 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHH-CTTSEEEEECCCT
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhh-CCCcEEEEecccC
Confidence 3589999999999999999999996 7899998763222222110000000001111222323222 1677777765432
Q ss_pred hHHHHHHHHhh-----cc---CCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 85 PVDQTIAALSE-----HM---SPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~-----~l---~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.-.+.++.+.. .+ ..-|+|||++-.. ..-..+.+.+...++.++..++++
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~-~~R~~in~~c~~~~~Pli~~gv~~ 172 (292)
T 3h8v_A 115 TTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNF-EARMTINTACNELGQTWMESGVSE 172 (292)
T ss_dssp TSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSH-HHHHHHHHHHHHHTCCEEEEEECT
T ss_pred CcHHHHHHHhhhhcccccccCCCCCEEEECCcch-hhhhHHHHHHHHhCCCEEEeeeec
Confidence 11122233321 11 3568999987654 333445556667788898887775
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.013 Score=58.92 Aligned_cols=100 Identities=11% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeC--ChhHHHHHHHhhcccCCC----------------Ceeee--CCH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNR--TTSKVDETLDRAHREGQL----------------PLTGH--YTP 63 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr--~~~~~~~~~~~~~~~g~~----------------~i~~~--~s~ 63 (505)
+.||||+|+|.+|+.+++.|.++ +.+|. +.|+ +++....+.+.....|.+ .+... .++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 46999999999999999998875 56765 5564 666666555421100000 11112 356
Q ss_pred HHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+++--.-.++|+||+|+|.....+ ....++..|..+|+.|.-
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e----~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTME----KAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHH----HHGGGGGGTCSEEEESSC
T ss_pred HHCccccCCCCEEEECCCchhhHH----HHHHHHhCCCeEEEeccC
Confidence 654100024899999999975432 334567778677777664
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0041 Score=57.69 Aligned_cols=34 Identities=15% Similarity=0.403 Sum_probs=31.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..+|.|||+|.-|..+|..|+++|++|+++|+++
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3579999999999999999999999999999875
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.037 Score=54.94 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=58.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeC--ChhHHHH----HHHhhcccC-CCCeeeeC-CHHHHHhhcCCCcE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNR--TTSKVDE----TLDRAHREG-QLPLTGHY-TPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr--~~~~~~~----~~~~~~~~g-~~~i~~~~-s~~e~v~~l~~adv 75 (505)
|||.|+|+ |.+|.+++..|+..|+ ++.++|+ ++++.+. +.......+ ...+...+ ++.+..+. +|+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~g---aD~ 77 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE---SDV 77 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT---CSE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCC---CCE
Confidence 58999999 9999999999998885 6889999 7654432 222111000 00122222 23444444 999
Q ss_pred EEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 76 VIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 76 Iil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
||++.-.+ . .++++++.+..+- +.+|+..||-.
T Consensus 78 Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv 125 (313)
T 1hye_A 78 VIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPV 125 (313)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSH
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcH
Confidence 99987322 1 1233334444443 56777776643
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.051 Score=52.90 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchh
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.+.++.+|.+.|.+.+..+..++|++.+.++. ++|.+++.++.+.| ...|.+++.....+.+.+.. +
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 230 (287)
T 3pdu_A 164 VGQGARMKLVVNMIMGQMMTALGEGMALGRNC------GLDGGQLLEVLDAG-AMANPMFKGKGQMLLSGEFP------T 230 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHS-TTCCHHHHHHHHHHHHTCCC------C
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-cccChHHHhhccccccCCCC------C
Confidence 36788999999999999999999999998853 39999999999987 35677777665555443211 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (505)
.|. +.....+++.++..|-+.|+|+|.+.++...|...
T Consensus 231 ~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 268 (287)
T 3pdu_A 231 SFP--LKHMQKDLRLAVELGDRLGQPLHGAATANESFKRA 268 (287)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 121 22334457999999999999999999988766543
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.046 Score=55.06 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=63.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HH----HHHHhhcccCCCCeeeeCCHHHHHhhcCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VD----ETLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~~~--~~----~~~~~~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
-||+|+|+ |.+|.+++..|+.... ++.+||+++.. ++ ++.. .......++...+++.+..++
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~-~~~~~~~~~~~~~~~~~a~~~--- 100 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELED-CAFPLLDKVVVTADPRVAFDG--- 100 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH-TTCTTEEEEEEESCHHHHTTT---
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhh-cCccCCCcEEEcCChHHHhCC---
Confidence 38999996 9999999999998754 79999998742 22 2221 110000035566777776665
Q ss_pred CcEEEEecCC----Cc-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 73 PRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 73 advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+|+||++--. +. .++++.+.+..+..++.+|+-.||-
T Consensus 101 advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 101 VAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 9999997522 11 2344445666666677777777763
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.022 Score=60.38 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCC
Q 010652 7 SRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~-lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
++|.|||+|..|.+ +|+.|.+.|++|+++|..+.. .+.+.+.+.. +..-.+++. +. .+|+||.+ +|.
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~-----~~~g~~~~~-~~---~~d~vV~Spgi~~ 93 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQ-----IYFHHRPEN-VL---DASVVVVSTAISA 93 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCE-----EESSCCGGG-GT---TCSEEEECTTSCT
T ss_pred CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCE-----EECCCCHHH-cC---CCCEEEECCCCCC
Confidence 58999999999996 999999999999999976543 4455544321 222223333 33 38999986 454
Q ss_pred Cch-HHHHHH---------HHh-hccCCC-CEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 83 GSP-VDQTIA---------ALS-EHMSPG-DCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 83 ~~~-v~~vl~---------~l~-~~l~~g-~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
+.+ +....+ +++ ..++.. -|-|-+||+...++.-+...+...|.
T Consensus 94 ~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 94 DNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp TCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 432 222211 222 223322 36666777776666666777777774
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0092 Score=60.60 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=56.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCC--CCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQ--LPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~--~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|+| .|.+|+.+.+.|.++.. +|...+...+.-.++...... .+. ..+... + ++..+ ++|+||+|+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~---~vDvVf~atp 91 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFS---TVDAVFCCLP 91 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGG---GCSEEEECCC
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhc---CCCEEEEcCC
Confidence 5899999 89999999999998764 766664333221111111100 000 011111 1 33223 3999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.+... +. ...+ ..|..|||.|+.+
T Consensus 92 ~~~s~-~~---a~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 92 HGTTQ-EI---IKEL-PTALKIVDLSADF 115 (359)
T ss_dssp TTTHH-HH---HHTS-CTTCEEEECSSTT
T ss_pred chhHH-HH---HHHH-hCCCEEEECCccc
Confidence 97532 22 2234 6789999998865
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.025 Score=55.24 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCC-----hhHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcE
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRT-----TSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRS 75 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~-----~~~~~~~~~~~~~~g~~~i~~----~~s~~e~v~~l~~adv 75 (505)
+++|.|+|. |.+|+.++..|++.|++|.+.+|+ +++.+.+.... .. ++.. ..+++.+.+.++++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~-~~---~~~~~~~D~~d~~~l~~~~~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK-QL---GAKLIEASLDDHQRLVDALKQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH-TT---TCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH-hC---CeEEEeCCCCCHHHHHHHHhCCCE
Confidence 468999995 999999999999999999999998 44444332110 00 1111 1244444444555888
Q ss_pred EEEecCC
Q 010652 76 VIILVKA 82 (505)
Q Consensus 76 Iil~vp~ 82 (505)
||.+...
T Consensus 80 vi~~a~~ 86 (313)
T 1qyd_A 80 VISALAG 86 (313)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 8877654
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.036 Score=59.15 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cC
Q 010652 7 SRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~-lA~~La~~G~~V~v~dr~~--~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp 81 (505)
++|-|||.|-.|.+ +|+.|.+.|++|+++|.+. ...+.+.+.+. .+..-.+++.+... +|+||.+ +|
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi-----~~~~G~~~~~~~~~---~d~vV~Spgi~ 91 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGV-----TIEEGYLIAHLQPA---PDLVVVGNAMK 91 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTC-----EEEESCCGGGGCSC---CSEEEECTTCC
T ss_pred CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCC-----EEECCCCHHHcCCC---CCEEEECCCcC
Confidence 68999999999986 7999999999999999863 34555655543 12322344444333 8999885 45
Q ss_pred CCch-HHHHHH---------HHh-hcc-CC-CCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 82 AGSP-VDQTIA---------ALS-EHM-SP-GDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 82 ~~~~-v~~vl~---------~l~-~~l-~~-g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
.+.+ +....+ +++ ..+ +. .-|-|-+||+...+|.-+...+...|.
T Consensus 92 ~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~ 149 (524)
T 3hn7_A 92 RGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI 149 (524)
T ss_dssp TTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 4433 333221 222 222 22 246666777776666666677777664
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.039 Score=56.83 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=104.1
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeC----------ChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~~V~-v~dr----------~~~~~~~~~~~~~~~g~~-~i~~~~s~~e~v~~l~~a 73 (505)
.+|.|.|.|+||...+..|.+ .|.+|+ +.|. +++.+.++.+....-.++ +... .+.+++... +|
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~-~~~~eil~~--~~ 286 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGER-ITNEELLEL--DV 286 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEE-ECHHHHTTC--SC
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceE-cCchhhhcC--CC
Confidence 579999999999999999999 999987 6676 667776666542110000 1122 255666542 48
Q ss_pred cEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC--CCCChhhhhcCCcccCCCC
Q 010652 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG--VSGGEEGARHGPSLMPGGS 151 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p--vsgg~~~a~~G~~i~~gg~ 151 (505)
|+++-|...+.... +-.+.+ .-++|+...|... |.+..+.+.++|+.++.-- -+||..
T Consensus 287 DIliP~A~~n~i~~----~~a~~l-~ak~V~EgAN~p~--t~~a~~~l~~~Gi~~~PD~~aNaGGV~------------- 346 (415)
T 2tmg_A 287 DILVPAALEGAIHA----GNAERI-KAKAVVEGANGPT--TPEADEILSRRGILVVPDILANAGGVT------------- 346 (415)
T ss_dssp SEEEECSSTTSBCH----HHHTTC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTCHHHH-------------
T ss_pred cEEEecCCcCccCc----ccHHHc-CCeEEEeCCCccc--CHHHHHHHHHCCCEEEChHHHhCCCce-------------
Confidence 99999877653222 223334 5678888888753 4566677889998876421 122221
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010652 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~ 223 (505)
-..++-++. .. ...|- ..-|+..++..+-..+.+++..+++.| +++.+...+
T Consensus 347 ~s~~E~vqN----~~-------~~~w~--------~e~v~~~l~~~m~~~~~~v~~~A~~~g-~~~~~aA~~ 398 (415)
T 2tmg_A 347 VSYFEWVQD----LQ-------SFFWD--------LDQVRNALEKMMKGAFNDVMKVKEKYN-VDMRTAAYI 398 (415)
T ss_dssp HHHHHHHHH----HT-------TCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHH
T ss_pred EEEEEEEec----Cc-------cccCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 112222221 12 11111 133455555555567778888888887 777665544
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.024 Score=55.71 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChh-HHHHH---HHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTS-KVDET---LDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~---~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil 78 (505)
+++|.|+|. |.+|..++..|++.|++|.+.+|+++ +.+.+ ...+. .+.. ..+.+++.+.++++|+||.
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGA-----IIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTC-----EEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCC-----EEEEecCCCHHHHHHHHcCCCEEEE
Confidence 348999995 99999999999999999999999875 33222 22211 1111 1244444444555888887
Q ss_pred ecCC
Q 010652 79 LVKA 82 (505)
Q Consensus 79 ~vp~ 82 (505)
+...
T Consensus 86 ~a~~ 89 (318)
T 2r6j_A 86 ALAF 89 (318)
T ss_dssp CCCG
T ss_pred CCch
Confidence 7643
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.022 Score=59.56 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-C---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-F---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~---~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||.|||+|.||+.++..++++. + +|++.|.+.... +..+... .+++...|.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-------------------~~~~~~g----~~~~~~~Vd 69 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-------------------DVAQQYG----VSFKLQQIT 69 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-------------------CHHHHHT----CEEEECCCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-------------------hHHhhcC----CceeEEecc
Confidence 468999999999999999999874 4 688888664321 1111111 344444554
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pv 133 (505)
+. .+++++. +.+..+++||+.+ .+.....+.+.+.+.|++|+|..+
T Consensus 70 ad-nv~~~l~---aLl~~~DvVIN~s--~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 70 PQ-NYLEVIG---STLEENDFLIDVS--IGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp TT-THHHHTG---GGCCTTCEEEECC--SSSCHHHHHHHHHHHTCEEEESSC
T ss_pred ch-hHHHHHH---HHhcCCCEEEECC--ccccCHHHHHHHHHcCCCEEECCC
Confidence 43 3444443 3445569999855 445667788888889999999754
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.026 Score=58.56 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr----------~~~~~~~~~~~~~~~g~~-~i~~~~s~~e~v~~l~~ad 74 (505)
++|+|.|.|++|...|+.|.+.|.+|+ +.|+ +.+.+.++.+....-.++ ... ..+.+++... +||
T Consensus 236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~-~i~~~ei~~~--~~D 312 (440)
T 3aog_A 236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAE-PLPAADFWGL--PVE 312 (440)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSE-ECCHHHHTTC--CCS
T ss_pred CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCce-EcCchhhhcC--CCc
Confidence 579999999999999999999999987 6677 566666665542110000 112 2255666542 499
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+++-|...+.... +-++.+ .-.+|+...|... |.+..+.+.++|+.|+.
T Consensus 313 IlvPcA~~n~i~~----~na~~l-~ak~VvEgAN~p~--t~eA~~iL~~~GI~~~P 361 (440)
T 3aog_A 313 FLVPAALEKQITE----QNAWRI-RARIVAEGANGPT--TPAADDILLEKGVLVVP 361 (440)
T ss_dssp EEEECSSSSCBCT----TTGGGC-CCSEEECCSSSCB--CHHHHHHHHHHTCEEEC
T ss_pred EEEecCCcCccch----hhHHHc-CCcEEEecCcccc--CHHHHHHHHHCCCEEEC
Confidence 9999876543221 222334 5678888888753 46667788899988773
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.056 Score=53.82 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=46.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHH----HHHHhhcc-cCCCCeeeeCCHHHHHhhc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVD----ETLDRAHR-EGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~----~~~~~~~~-~g~~~i~~~~s~~e~v~~l 70 (505)
.|||.|+|. |.+|+.++..|++.|+ +|.++|+++ ++.+ ++...... .+ .+....+..+.++.
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~--di~~~~~~~~a~~~- 80 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLA--GLEATDDPKVAFKD- 80 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEE--EEEEESCHHHHTTT-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccC--CeEeccChHHHhCC-
Confidence 468999996 9999999999999996 899999975 2222 12110000 00 23334556665554
Q ss_pred CCCcEEEEec
Q 010652 71 QRPRSVIILV 80 (505)
Q Consensus 71 ~~advIil~v 80 (505)
+|+||.+.
T Consensus 81 --~D~Vih~A 88 (327)
T 1y7t_A 81 --ADYALLVG 88 (327)
T ss_dssp --CSEEEECC
T ss_pred --CCEEEECC
Confidence 99999875
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.049 Score=52.25 Aligned_cols=123 Identities=9% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..++.+|+..|. +++++|.+.-....+..+.. .....+-.-.....+.+..+ .+++-+..++..
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~v~~~~~~ 106 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQL-NPDIQLTALQQR 106 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3689999999999999999999997 68899877521111111100 00000000011112222211 145545555432
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
-. .+-+.++.. .-++|||++.. +..-..+.+.+.+.++.++.+.+.
T Consensus 107 ~~-~~~~~~~~~---~~DvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~ 152 (251)
T 1zud_1 107 LT-GEALKDAVA---RADVVLDCTDN-MATRQEINAACVALNTPLITASAV 152 (251)
T ss_dssp CC-HHHHHHHHH---HCSEEEECCSS-HHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CC-HHHHHHHHh---cCCEEEECCCC-HHHHHHHHHHHHHhCCCEEEEecc
Confidence 11 122233332 34888888663 333334455556667777765443
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.032 Score=54.32 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=55.9
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|+++| | .+-+|..+|+.|++.|.+|.+.+|+.+++++..++... . +-.+..=+.+..
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~-----------------~---~~~~~~Dv~~~~ 88 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGG-----------------G---AVGIQADSANLA 88 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---CEEEECCTTCHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-----------------C---eEEEEecCCCHH
Confidence 467777 5 57799999999999999999999999988776654211 0 212222244445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+++++++++...+.+=|++|+...
T Consensus 89 ~v~~~~~~~~~~~G~iDiLVNNAG 112 (273)
T 4fgs_A 89 ELDRLYEKVKAEAGRIDVLFVNAG 112 (273)
T ss_dssp HHHHHHHHHHHHHSCEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 677777777666554466776543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.024 Score=55.75 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=31.8
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
++++|.|+|. |.+|..++..|++.|++|.+.+|++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 4678999995 9999999999999999999999986
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.041 Score=52.56 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=55.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+.... . ...+..=+.+...+
T Consensus 10 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~v 69 (259)
T 4e6p_A 10 SALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGP-----------------A---AYAVQMDVTRQDSI 69 (259)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---EEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC-----------------C---ceEEEeeCCCHHHH
Confidence 466667 58999999999999999999999999887665543110 0 11222223444556
Q ss_pred HHHHHHHhhccCCCCEEEeCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+++++++.....+=|++|++...
T Consensus 70 ~~~~~~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 70 DAAIAATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHHHHHHHSSSCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 67777776666566778876554
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.025 Score=55.11 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=31.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+++|.|+|. |.+|..++..|++.|++|++.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 468999996 9999999999999999999999973
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.066 Score=50.48 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=52.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|-|||.|.+|..-+..|.+.|.+|++++++.. .++.+.+.+ ++.... ...+ +.|.++|+||.++.++
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~------~i~~i~~~~~~--~dL~~adLVIaAT~d~- 102 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKG------QLRVKRKKVGE--EDLLNVFFIVVATNDQ- 102 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTT------SCEEECSCCCG--GGSSSCSEEEECCCCT-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcC------CcEEEECCCCH--hHhCCCCEEEECCCCH-
Confidence 5899999999999999999999999999987653 345555432 122211 1111 2344599999886654
Q ss_pred hHHHHHHHH
Q 010652 85 PVDQTIAAL 93 (505)
Q Consensus 85 ~v~~vl~~l 93 (505)
.+...+...
T Consensus 103 ~~N~~I~~~ 111 (223)
T 3dfz_A 103 AVNKFVKQH 111 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 565555444
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.038 Score=53.37 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=57.0
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .-. +...+..=+.+..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~---~~~~~~~Dv~d~~ 90 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQ--------------AGL---EGRGAVLNVNDAT 90 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH--------------HTC---CCEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCC---cEEEEEEeCCCHH
Confidence 355555 5 58999999999999999999999999877665543211 000 1233333445555
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++.+++++...+.+=|++|++...
T Consensus 91 ~v~~~~~~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 91 AVDALVESTLKEFGALNVLVNNAGI 115 (270)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6777777776665555788876543
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.025 Score=56.92 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=49.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHH--HHHHHhhcccCCCCeeeeC---CHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKV--DETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~--~~~~~~~~~~g~~~i~~~~---s~~e~v~~l~~advIil~ 79 (505)
.++|.|.|. |.+|..++..|++.|++|.+.+|++++. +.+...... .+...+ +.+.+.+.++++|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v----~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNV----TLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTE----EEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCc----EEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 468999995 9999999999999999999999988764 333321100 112222 445454445569999976
Q ss_pred cCC
Q 010652 80 VKA 82 (505)
Q Consensus 80 vp~ 82 (505)
...
T Consensus 81 a~~ 83 (352)
T 1xgk_A 81 TTS 83 (352)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.026 Score=54.91 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+++|.|+|. |.+|+.++..|++.|++|.+.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 468999996 9999999999999999999999987
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.049 Score=52.16 Aligned_cols=89 Identities=9% Similarity=0.038 Sum_probs=55.8
Q ss_pred CCccCC-CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASAL-SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~-~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|+.++. +++-|.| .|-+|..+++.|+++|++|.+.+|++++.+++.+... .. ...+..
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~ 60 (260)
T 1nff_A 1 MSGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----------------DA---ARYVHL 60 (260)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----------------GG---EEEEEC
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----------------cC---ceEEEe
Confidence 544333 3466667 5999999999999999999999999887666543211 00 112222
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
=+.+...++++++.+...+.+=|++|++...
T Consensus 61 D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~ 91 (260)
T 1nff_A 61 DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGI 91 (260)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2334445666666666555455777776543
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0087 Score=58.73 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=45.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+|+|.|.| .|.+|+.++..|+++|++|++.+|+++..+ +. +.. -+...-+.+++.+.++++|+||.+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--~~~----~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN--DYE----YRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCE----EEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC--ceE----EEEccccHHHHHHhhcCCCEEEEcccc
Confidence 47899999 599999999999999999999999955443 22 110 011111233333444558888877643
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.013 Score=59.38 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcE-EEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG----FPI-SVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G----~~V-~v~dr~~ 39 (505)
+++|||||+|.||+.++..|.++. .+| .++|++.
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~ 42 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER 42 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh
Confidence 468999999999999999999863 454 4667643
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.07 Score=53.46 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=62.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC--c-----EEEEeCCh--hHHH----HHHHhhcccCCCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGF--P-----ISVYNRTT--SKVD----ETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~--~-----V~v~dr~~--~~~~----~~~~~~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.+||.|+| +|.+|.+++..|+..|. + +.++|+++ ++++ ++..-.... ..++....+..+..++
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~d-- 79 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKD-- 79 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTT--
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCC--
Confidence 35899999 79999999999998886 5 99999975 2332 222211000 0024445566655555
Q ss_pred CCcEEEEecCCC---------------chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 72 RPRSVIILVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 72 ~advIil~vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+|+||++.-.+ ..++++++.+..+-.++-.++..||-
T Consensus 80 -aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 80 -LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp -CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred -CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 99999875221 12444556666655444457777763
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.051 Score=58.29 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=63.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~ 82 (505)
.++|.|+|.|.+|..++..|.+.|++|.+.|.++++++.+.+. +.. -+....+-++..+ .++++|.+++ .++
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~----~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~ 201 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFK----VVYGSPTDAHVLAGLRVAAARSIIA-NLS 201 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSE----EEESCTTCHHHHHHTTGGGCSEEEE-CSC
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCe----EEEeCCCCHHHHHhcCcccCCEEEE-eCC
Confidence 4679999999999999999999999999999999999888765 432 1222333344443 2456899887 444
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
+ .....+-..+..+..-.++.-..
T Consensus 202 D-~~n~~~~~~ar~~~~~~iiar~~ 225 (565)
T 4gx0_A 202 D-PDNANLCLTVRSLCQTPIIAVVK 225 (565)
T ss_dssp H-HHHHHHHHHHHTTCCCCEEEECS
T ss_pred c-HHHHHHHHHHHHhcCceEEEEEC
Confidence 3 33322223344444445555543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.032 Score=53.58 Aligned_cols=82 Identities=16% Similarity=0.303 Sum_probs=56.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCCc
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
.+-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~~ 73 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT----------------G---RRALSVGTDITDDA 73 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHH
Confidence 3555664 78999999999999999999999998877665432110 0 233333 344445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++++++++.....+=|++|++..
T Consensus 74 ~v~~~~~~~~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 74 QVAHLVDETMKAYGRVDVVINNAF 97 (264)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCC
Confidence 677777777776666688888763
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0081 Score=60.83 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=57.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC-----C-cEEEEe-C-ChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKG-----F-PISVYN-R-TTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G-----~-~V~v~d-r-~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|+||+|+| .|.+|+.+.+.|.+++ . +|..+. + +..+ ...............+. ..+.+++ .. +|+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~-~~~~~~~-~~---~Dv 83 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE-PTEAAVL-GG---HDA 83 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE-ECCHHHH-TT---CSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec-cCCHHHh-cC---CCE
Confidence 46899999 8999999999999988 3 666554 2 3222 21110000000000121 1244443 33 999
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
||+|+|.+. ..+++..+ ..|..+||.|+..-
T Consensus 84 Vf~alg~~~-s~~~~~~~----~~G~~vIDlSa~~R 114 (352)
T 2nqt_A 84 VFLALPHGH-SAVLAQQL----SPETLIIDCGADFR 114 (352)
T ss_dssp EEECCTTSC-CHHHHHHS----CTTSEEEECSSTTT
T ss_pred EEECCCCcc-hHHHHHHH----hCCCEEEEECCCcc
Confidence 999999874 34443333 56899999998764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.029 Score=54.19 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=50.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|.|.|. |.+|+.++..|++. |++|.+.+|++++...+...+. .+.. ..+++++.+.++++|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v-----~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKV-----SVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTB-----EEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCC-----EEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 57999995 99999999999998 9999999999987554332211 1111 12455555556668998887654
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.043 Score=57.08 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=68.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH--HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--C
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--K 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~--~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p 81 (505)
.++|.|||+|..|.+.|+.|++.|++|+++|...... ..+. .+. ++..-...++.++. +|.||++- |
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~-----~~~~g~~~~~~~~~---~d~vV~s~gi~ 75 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAV-----ERHTGSLNDEWLMA---ADLIVASPGIA 75 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTS-----CEEESSCCHHHHHT---CSEEEECTTSC
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCC-----EEEECCCcHHHhcc---CCEEEeCCCCC
Confidence 3689999999999999999999999999999765321 1121 221 22212222444544 89888863 3
Q ss_pred CC-chHHHHH----------HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 82 AG-SPVDQTI----------AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 82 ~~-~~v~~vl----------~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
.. ..+.... +.+...+....|-|-+||+...++.-+...+.+.|..
T Consensus 76 ~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~ 132 (439)
T 2x5o_A 76 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVN 132 (439)
T ss_dssp TTCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 22 2222211 1122223334566667777766666667777777654
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.16 Score=49.98 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=77.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchh
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.+.++.+|.+.|.+.+..+..++|++.+.++. ++|.+++.++.+.| -..|.+++.....+.+.+.. +
T Consensus 184 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 250 (310)
T 3doj_A 184 VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKS------GLSSDTLLDILDLG-AMTNPMFKGKGPSMNKSSYP------P 250 (310)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TSCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCC------C
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCC------C
Confidence 36788999999999999999999999998853 39999999999876 34577766654444332211 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (505)
-|. +.....+++-++..|-+.|+|+|.+.++...|..
T Consensus 251 ~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 287 (310)
T 3doj_A 251 AFP--LKHQQKDMRLALALGDENAVSMPVAAAANEAFKK 287 (310)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred Ccc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 121 2233445688899999999999999998887654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.037 Score=52.73 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=56.1
Q ss_pred CCccCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~~~-IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|..+...| +-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... ......+...+-.
T Consensus 1 M~~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 66 (250)
T 3nyw_A 1 MSLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMR--------------SNKHVQEPIVLPL 66 (250)
T ss_dssp ----CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHH--------------HCTTSCCCEEEEC
T ss_pred CcccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--------------hccccCcceEEec
Confidence 44333334 55556 58999999999999999999999999887766543211 0000001222222
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
=+.+...++.+++++.....+=|++|++...
T Consensus 67 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 67 DITDCTKADTEIKDIHQKYGAVDILVNAAAM 97 (250)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3344455666666666655555677776543
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0094 Score=60.02 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=35.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHH
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEK-GFPISVYNRTTSKVDET 45 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~ 45 (505)
++|+|.|.| .|.+|+.++..|++. |++|++.+|++++...+
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~ 65 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL 65 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh
Confidence 457899999 599999999999998 99999999998765544
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.051 Score=52.38 Aligned_cols=82 Identities=9% Similarity=0.058 Sum_probs=54.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.++..+... .. ...+..=+.+...+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 72 (271)
T 3tzq_B 13 VAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG-----------------RG---AVHHVVDLTNEVSV 72 (271)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC-----------------TT---CEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------CC---eEEEECCCCCHHHH
Confidence 355556 5899999999999999999999999887766554311 00 22222233444556
Q ss_pred HHHHHHHhhccCCCCEEEeCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+++++.+.....+=|++|++...
T Consensus 73 ~~~~~~~~~~~g~id~lv~nAg~ 95 (271)
T 3tzq_B 73 RALIDFTIDTFGRLDIVDNNAAH 95 (271)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666666655555777776554
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.062 Score=54.24 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEEEE-e-C-ChhHHHHHHHhhcccCCC----------------Ceeee--CC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPISVY-N-R-TTSKVDETLDRAHREGQL----------------PLTGH--YT 62 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~-G~~V~v~-d-r-~~~~~~~~~~~~~~~g~~----------------~i~~~--~s 62 (505)
++.||||+|.|.+|+.+.+.|.++ .++|... | + +.+....+.+.....|.+ .+... .+
T Consensus 16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d 95 (354)
T 3cps_A 16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD 95 (354)
T ss_dssp --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence 356999999999999999999987 5777655 4 2 333222332211100000 12222 25
Q ss_pred HHHHH---hhcCCCcEEEEecCCCchHHHHHHHHhhccCCCC--EEEeCCC
Q 010652 63 PRDFV---LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGD--CIIDGGN 108 (505)
Q Consensus 63 ~~e~v---~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 108 (505)
++++. .. +|+||.|+|..... +....++..|. +|||.+.
T Consensus 96 p~~i~w~~~~---vDvV~eatg~~~s~----e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 96 PAEIPWGASG---AQIVCESTGVFTTE----EKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GGGCCHHHHT---CCEEEECSSSCCSH----HHHGGGGTTTCSEEEESSCC
T ss_pred hHHCCcccCC---CCEEEECCCchhhH----HHHHHHHHcCCcEEEEeCCC
Confidence 55431 23 89999999987543 23345667777 9999876
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.093 Score=50.27 Aligned_cols=70 Identities=10% Similarity=0.164 Sum_probs=49.5
Q ss_pred cEEEEcc-cHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCC
Q 010652 8 RIGLAGL-AVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
+|.|.|. |.+|+.++..|+++ |++|++.+|++++.+.+...+.. +.. ..+.+++.+.++++|+||.+...
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGIT-----VRQADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCe-----EEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 4788986 99999999999998 99999999998876655433211 111 12455555555669999987643
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.01 Score=60.03 Aligned_cols=34 Identities=24% Similarity=0.592 Sum_probs=32.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|||.|||.|..|..+|..|+++|++|++++++++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6899999999999999999999999999998754
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.049 Score=52.19 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=53.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+|-|-| .+-+|..+|+.|++.|++|.+.||++++.+++.+++.+ +..+..=+.+..++
T Consensus 4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~---------------------~~~~~~Dv~~~~~v 62 (247)
T 3ged_A 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN---------------------LFYFHGDVADPLTL 62 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT---------------------EEEEECCTTSHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC---------------------EEEEEecCCCHHHH
Confidence 454555 58899999999999999999999999887766544211 11111223444566
Q ss_pred HHHHHHHhhccCCCCEEEeCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~s 107 (505)
+++++++...+.+=|++|+..
T Consensus 63 ~~~v~~~~~~~g~iDiLVNNA 83 (247)
T 3ged_A 63 KKFVEYAMEKLQRIDVLVNNA 83 (247)
T ss_dssp HHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 677766666665557777754
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.037 Score=55.10 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=31.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
++|.|.|. |.+|+.++..|++.|++|++.+|++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 68999997 9999999999999999999999976
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.056 Score=50.93 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=53.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 63 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG-----------------NA---VIGIVADLAHHED 63 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------CC---ceEEECCCCCHHH
Confidence 45677775 899999999999999999999999988776554311 00 1222222334445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++.+.....+=|++|++...
T Consensus 64 v~~~~~~~~~~~g~id~lvnnAg~ 87 (235)
T 3l6e_A 64 VDVAFAAAVEWGGLPELVLHCAGT 87 (235)
T ss_dssp HHHHHHHHHHHHCSCSEEEEECCC
T ss_pred HHHHHHHHHHhcCCCcEEEECCCC
Confidence 666666665555455666665443
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.03 Score=57.83 Aligned_cols=114 Identities=9% Similarity=0.084 Sum_probs=67.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCCh---------------hHHHHHHHhhcccCCC-CeeeeCCHHHHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTT---------------SKVDETLDRAHREGQL-PLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr~~---------------~~~~~~~~~~~~~g~~-~i~~~~s~~e~v~~ 69 (505)
++|.|.|.|++|...|+.|.+.|.+|+ +.|.++ +.+.++.+....-.++ ..+. -+.+++...
T Consensus 213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~-i~~~~~~~~ 291 (421)
T 2yfq_A 213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAER-ITDEEFWTK 291 (421)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceE-eCccchhcC
Confidence 579999999999999999999999988 678883 4555554432110000 0011 122344331
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 70 IQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+||+++-|.+.+.... +-++.+ ...+|+...|.. .|.+..+.+.++|+.|+.
T Consensus 292 --~~DIliP~A~~n~i~~----~~A~~l-~ak~VvEgAN~P--~t~ea~~il~~~GI~~~P 343 (421)
T 2yfq_A 292 --EYDIIVPAALENVITG----ERAKTI-NAKLVCEAANGP--TTPEGDKVLTERGINLTP 343 (421)
T ss_dssp -----CEEECSCSSCSCH----HHHTTC-CCSEEECCSSSC--SCHHHHHHHHHHTCEEEC
T ss_pred --CccEEEEcCCcCcCCc----ccHHHc-CCeEEEeCCccc--cCHHHHHHHHHCCCEEEC
Confidence 4899998876653222 223334 578888888875 345666778889988763
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.06 Score=54.31 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=59.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCC--hh-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRT--TS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~-~V~v~dr~--~~-~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|-|||||| .|..|.-|.+.|.++.. ++....-. .. ++.+.......+ ..+.. .+++++.++ +|++|+|+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~--l~~~~-~~~~~~~~~---~Dvvf~al 86 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLEN--SILSE-FDPEKVSKN---CDVLFTAL 86 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCC--CBCBC-CCHHHHHHH---CSEEEECC
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccC--ceEEe-CCHHHhhcC---CCEEEECC
Confidence 34899998 59999999999998853 55544322 21 222211110010 11222 256666565 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|.+. . .++.+.+ .|..|||.|+.+
T Consensus 87 p~~~-s----~~~~~~~-~g~~VIDlSsdf 110 (351)
T 1vkn_A 87 PAGA-S----YDLVREL-KGVKIIDLGADF 110 (351)
T ss_dssp STTH-H----HHHHTTC-CSCEEEESSSTT
T ss_pred CcHH-H----HHHHHHh-CCCEEEECChhh
Confidence 9973 2 3455656 899999999875
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.04 Score=52.58 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=51.1
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHH
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.++..++. -.. ...+..=+.+...++
T Consensus 10 ~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------~~~---~~~~~~Dv~~~~~v~ 69 (257)
T 3tpc_A 10 FIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----------------GAA---VRFRNADVTNEADAT 69 (257)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------------------------CEEEECCTTCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----------------CCc---eEEEEccCCCHHHHH
Confidence 55556 589999999999999999999999987655443210 011 233333344555677
Q ss_pred HHHHHHhhccCCCCEEEeCCCCC
Q 010652 88 QTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++++.+.....+=|++|++....
T Consensus 70 ~~~~~~~~~~g~id~lv~nAg~~ 92 (257)
T 3tpc_A 70 AALAFAKQEFGHVHGLVNCAGTA 92 (257)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCC
Confidence 77777766665567888876543
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.048 Score=53.21 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=36.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
+++-|+| .|-+|..++..|++.|++|+++||++++.+++.+
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 4688999 9999999999999999999999999988776654
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.071 Score=50.67 Aligned_cols=99 Identities=9% Similarity=0.085 Sum_probs=57.6
Q ss_pred CCccCC-CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASAL-SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~-~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|..+++ ++|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+..... ...+.... .+..++..
T Consensus 1 m~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~ 70 (264)
T 2pd6_A 1 MQNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGP---------GSKEGPPR-GNHAAFQA 70 (264)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC----------------------CCEEEEC
T ss_pred CccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---------CccccccC-cceEEEEe
Confidence 544443 3466776 599999999999999999999999998877665432100 00000000 00222222
Q ss_pred ecCCCchHHHHHHHHhhccCCC-CEEEeCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPG-DCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g-~iiId~st~ 109 (505)
=+.+...++++++.+.....+= ++||++...
T Consensus 71 D~~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~ 102 (264)
T 2pd6_A 71 DVSEARAARCLLEQVQACFSRPPSVVVSCAGI 102 (264)
T ss_dssp CTTSHHHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 2344445666666665544443 788887654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.032 Score=53.31 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=54.6
Q ss_pred CCccCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~~~-IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|..++..| +-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++
T Consensus 1 M~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~ 61 (252)
T 3h7a_A 1 MSLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA----------------G---GRIVAR 61 (252)
T ss_dssp ----CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT----------------T---CEEEEE
T ss_pred CCcCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CeEEEE
Confidence 44333334 55666 589999999999999999999999998877665432110 0 222222
Q ss_pred --ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 --LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 --~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
=+.+...++.+++.+... .+=+++|++...
T Consensus 62 ~~Dv~~~~~v~~~~~~~~~~-g~id~lv~nAg~ 93 (252)
T 3h7a_A 62 SLDARNEDEVTAFLNAADAH-APLEVTIFNVGA 93 (252)
T ss_dssp ECCTTCHHHHHHHHHHHHHH-SCEEEEEECCCC
T ss_pred ECcCCCHHHHHHHHHHHHhh-CCceEEEECCCc
Confidence 234444566666666655 444677776543
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.07 Score=51.04 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=56.3
Q ss_pred CCccCC-CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASAL-SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~-~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|..++. +++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+..... . .++.++
T Consensus 1 m~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~ 61 (262)
T 1zem_A 1 MSKKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSY 61 (262)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEE
T ss_pred CCcccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEE
Confidence 443333 3466666 589999999999999999999999988766554321100 0 222222
Q ss_pred --ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 --LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 --~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
=+.+...++.+++.+...+.+=|++|++...
T Consensus 62 ~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 94 (262)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 2334445666666666655555788876543
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.035 Score=57.65 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=69.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC---cEEEEe----CC----hh-HHHHHHH---hhcccCCCCe-eeeCCHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF---PISVYN----RT----TS-KVDETLD---RAHREGQLPL-TGHYTPRDFVLSI 70 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~---~V~v~d----r~----~~-~~~~~~~---~~~~~g~~~i-~~~~s~~e~v~~l 70 (505)
.+|.|+|+|.+|.+++..|.+.|. +|+++| |+ .+ ..+.+.. ..... .+. ....++.+.++.
T Consensus 187 ~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~--~~~~~~~~~L~e~l~~- 263 (439)
T 2dvm_A 187 ITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKK--TNGENIEGGPQEALKD- 263 (439)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTT--SCTTCCCSSHHHHHTT-
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhc--cccccccccHHHHhcc-
Confidence 589999999999999999999998 799999 87 32 2111211 10000 000 013467777766
Q ss_pred CCCcEEEEecCC--CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 71 QRPRSVIILVKA--GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 71 ~~advIil~vp~--~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+|+||-++|. +-..+ .....+.++.+|+|.+|-.++... +...+.|...+
T Consensus 264 --aDVlInaT~~~~G~~~~----e~v~~m~~~~iVfDLynP~~t~~~---~~A~~~G~~iv 315 (439)
T 2dvm_A 264 --ADVLISFTRPGPGVIKP----QWIEKMNEDAIVFPLANPVPEILP---EEAKKAGARIV 315 (439)
T ss_dssp --CSEEEECSCCCSSSSCH----HHHTTSCTTCEEEECCSSSCSSCH---HHHHHHTCSEE
T ss_pred --CCEEEEcCCCccCCCCh----HHHHhcCCCCEEEECCCCCCcchH---HHHHHcCCeEE
Confidence 9999999988 43222 234456788899999664433322 22333465555
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.12 Score=50.96 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=71.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCc-chhhHHHHHHHHHhcCCCCCCCcchh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCI-IRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~Gci-Irs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
+.++.+| .+.++.+..++|++.+.++ .++|.+++.++++.+.- .+|++++.....+.++...+.
T Consensus 174 g~g~~~k----~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----- 238 (306)
T 3l6d_A 174 AFATVLH----AHAFAAMVTFFEAVGAGDR------FGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGD----- 238 (306)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTT-----
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCC-----
Confidence 4555666 6778899999999998874 34999999999988732 478888776555544321111
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (505)
.|. +.-...+++.++..|-+.|+|+|.+.++...|...
T Consensus 239 ~~~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 276 (306)
T 3l6d_A 239 QAR--LDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRA 276 (306)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 111 11223456889999999999999999998877643
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.027 Score=55.70 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~vp 81 (505)
+|+|.|.|. |.+|+.++..|++.|++|++.+|++++.+.+...+. .+... .+.+++.+.++++|+||.+..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~-----~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEP-----ECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCC-----EEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCe-----EEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 468999995 999999999999999999999999876543322111 11111 244444444556888887764
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.065 Score=51.17 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=54.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~ 83 (505)
+++-|.| .|-+|..+++.|+++|++|.+.+|++++.+++.+... +.. . .++.++ =+.+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--------------~~~-~---~~~~~~~~D~~~~ 69 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLK--------------EKF-G---VRVLEVAVDVATP 69 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHH-C---CCEEEEECCTTSH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH--------------Hhc-C---CceEEEEcCCCCH
Confidence 3466666 5999999999999999999999999887665543210 000 1 223222 23333
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.++++++++.....+=|++|++...
T Consensus 70 ~~~~~~~~~~~~~~g~id~lv~~Ag~ 95 (263)
T 3ai3_A 70 EGVDAVVESVRSSFGGADILVNNAGT 95 (263)
T ss_dssp HHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666666555455777776543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.058 Score=51.18 Aligned_cols=83 Identities=17% Similarity=0.228 Sum_probs=53.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~ 83 (505)
+++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.++... .. .++.++ =+.+.
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~---~~~~~~~~Dv~~~ 68 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA----------------AG---AKVHVLELDVADR 68 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------------cC---CcEEEEECCCCCH
Confidence 3466666 58999999999999999999999998877665432110 00 222222 23333
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
..++.+++.+.....+=|++|++..
T Consensus 69 ~~~~~~~~~~~~~~g~id~lv~nAg 93 (247)
T 2jah_A 69 QGVDAAVASTVEALGGLDILVNNAG 93 (247)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4566666666555545577777654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.094 Score=50.46 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=58.6
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCC
Q 010652 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 7 ~~IgiI--GlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
-|+.+| |.+-+|..+|+.|++.|.+|.+.||++++.++..++....| .++..+ =+.+
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------------~~~~~~~~Dv~~ 69 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------------YDAHGVAFDVTD 69 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------------CCEEECCCCTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeeCCC
Confidence 478888 56889999999999999999999999988776654322111 122222 2344
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++++++++++.....+=|++|+...
T Consensus 70 ~~~v~~~~~~~~~~~G~iDiLVNNAG 95 (255)
T 4g81_D 70 ELAIEAAFSKLDAEGIHVDILINNAG 95 (255)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHCCCCcEEEECCC
Confidence 45677788888777666678887654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.074 Score=49.65 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=52.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+... . ...+..=+.+...
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------------------~---~~~~~~D~~~~~~ 64 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE------------------G---ALPLPGDVREEGD 64 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------------------T---CEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh------------------h---ceEEEecCCCHHH
Confidence 4577776 5999999999999999999999999887665543210 1 2222222333345
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++++++.+...+.+=+++|++..
T Consensus 65 ~~~~~~~~~~~~~~id~li~~Ag 87 (234)
T 2ehd_A 65 WARAVAAMEEAFGELSALVNNAG 87 (234)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 55556555554444467776654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.048 Score=52.20 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=55.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.....+ .. ..++..=+.+...+
T Consensus 31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~---~~~~~~D~~~~~~v 93 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--------------GE---AESHACDLSHSDAI 93 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CE---EEEEECCTTCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--------------Cc---eeEEEecCCCHHHH
Confidence 466666 5999999999999999999999999988776654321100 00 12222233444456
Q ss_pred HHHHHHHhhccCCCCEEEeCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+++.+.....+=+++|++...
T Consensus 94 ~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 94 AAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 66666666655556777776554
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.065 Score=55.25 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=76.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr----------~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~ad 74 (505)
++|.|.|.|.+|...|+.|.+.|.+|+ +.|+ +.+.+.++.+... .+.. ..+.+++... .||
T Consensus 219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g-----~v~~~~~~~~e~~~~--~~D 291 (419)
T 3aoe_E 219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATG-----SLPRLDLAPEEVFGL--EAE 291 (419)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHS-----SCSCCCBCTTTGGGS--SCS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhC-----Ccceeeccchhhhcc--Cce
Confidence 579999999999999999999999988 7888 7777777665422 1110 1133444331 499
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+++-|........ .-.+.+ .=++|+...|... |.+..+.+.++|+.|+.
T Consensus 292 VliP~A~~n~i~~----~~A~~l-~ak~V~EgAN~p~--t~~A~~~L~~~Gi~~~P 340 (419)
T 3aoe_E 292 VLVLAAREGALDG----DRARQV-QAQAVVEVANFGL--NPEAEAYLLGKGALVVP 340 (419)
T ss_dssp EEEECSCTTCBCH----HHHTTC-CCSEEEECSTTCB--CHHHHHHHHHHTCEEEC
T ss_pred EEEeccccccccc----chHhhC-CceEEEECCCCcC--CHHHHHHHHHCCCEEEC
Confidence 9998876543222 233444 3478999888753 46677788999998873
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.046 Score=52.91 Aligned_cols=86 Identities=9% Similarity=0.124 Sum_probs=56.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.++..+.....+ .. ..++.++ =+.+..
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~--~~~~~~~~~Dv~~~~ 76 (281)
T 3svt_A 13 TYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALG--------------AN--GGAIRYEPTDITNED 76 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC--------------CS--SCEEEEEECCTTSHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--------------CC--CceEEEEeCCCCCHH
Confidence 455666 5899999999999999999999999988776654321100 00 0122222 234445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++++.....+=|++|++...
T Consensus 77 ~v~~~~~~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 77 ETARAVDAVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5667777776655556788876653
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.088 Score=50.21 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=55.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.....+ .. ...+..=+.+...+
T Consensus 8 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~---~~~~~~Dv~~~~~v 70 (257)
T 3imf_A 8 VVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--------------GQ---ILTVQMDVRNTDDI 70 (257)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--------------TC---EEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------Cc---EEEEEccCCCHHHH
Confidence 355556 5899999999999999999999999988777655321100 00 12222233444567
Q ss_pred HHHHHHHhhccCCCCEEEeCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st 108 (505)
+++++++.....+=|++|++..
T Consensus 71 ~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 71 QKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 7777777666555578887655
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.07 Score=51.33 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=59.1
Q ss_pred CCcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecC
Q 010652 6 LSRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVK 81 (505)
Q Consensus 6 ~~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp 81 (505)
+-|+.+| | .+-+|..+|+.|++.|.+|.++||++++.+++.++....| .+++. .=|.
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g-------------------~~~~~~~~Dvt 66 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG-------------------KEVLGVKADVS 66 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEccCC
Confidence 3467777 4 5789999999999999999999999998877665421110 22322 2345
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+.++++++++.....+=|++|+...
T Consensus 67 ~~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 67 KKKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 556677777777776666678887654
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.037 Score=55.88 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=55.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC-CcEEEEe-CChhHHHHHHHhhcc--------cCCCCeeeeC-CHHHHHhhcCCC
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKG-FPISVYN-RTTSKVDETLDRAHR--------EGQLPLTGHY-TPRDFVLSIQRP 73 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G-~~V~v~d-r~~~~~~~~~~~~~~--------~g~~~i~~~~-s~~e~v~~l~~a 73 (505)
++||||+| .|.+|+.+.+.|.++. ++|.... .+...-+.+.+.... .+ ..+...+ +++++ + ++
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~-~---~v 78 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEV-QDLPIVSTNYEDH-K---DV 78 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHH-HTCBEECSSGGGG-T---TC
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCC-ceeEEeeCCHHHh-c---CC
Confidence 46899999 7999999999998764 4666553 221111111110000 00 0122221 44443 3 49
Q ss_pred cEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|+||+|+|.+. ..+....+ +..|..|||.|+.+
T Consensus 79 DvVf~atp~~~-s~~~a~~~---~~aG~~VId~s~~~ 111 (350)
T 2ep5_A 79 DVVLSALPNEL-AESIELEL---VKNGKIVVSNASPF 111 (350)
T ss_dssp SEEEECCCHHH-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred CEEEECCChHH-HHHHHHHH---HHCCCEEEECCccc
Confidence 99999998853 34444443 34678899998753
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.083 Score=50.07 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=53.1
Q ss_pred CCccCCC-cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 1 MEASALS-RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 M~~~~~~-~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|..++.. ++-|.| .|-+|..+++.|++.|++|.+.+|++ ++.++..+.. . .++.+
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------------~---~~~~~ 58 (249)
T 2ew8_A 1 MTQRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL-------------------G---RRVLT 58 (249)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT-------------------T---CCEEE
T ss_pred CCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhc-------------------C---CcEEE
Confidence 4443433 466666 59999999999999999999999998 6654322110 0 12222
Q ss_pred E--ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 78 I--LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 78 l--~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+ =+.+.+.++++++.+...+.+=|++|++...
T Consensus 59 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (249)
T 2ew8_A 59 VKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGI 92 (249)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEeecCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2 2333345666666666555555777776543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.037 Score=53.83 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=48.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-CcEEEEeCChhHH--HHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKG-FPISVYNRTTSKV--DETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G-~~V~v~dr~~~~~--~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~ 79 (505)
+++|.|.|. |.+|+.++..|++.| ++|.+.+|++++. +.+...+.. +.. ..+++.+.+.++++|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~-----~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAE-----VVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCE-----EEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCE-----EEEecCCCHHHHHHHHhcCCEEEEe
Confidence 468999997 999999999999998 9999999998754 223222211 111 12445544445568998887
Q ss_pred cC
Q 010652 80 VK 81 (505)
Q Consensus 80 vp 81 (505)
..
T Consensus 80 a~ 81 (299)
T 2wm3_A 80 TN 81 (299)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.13 Score=50.53 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=35.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
++|.|.|. |.+|+.++..|++.|++|++.+|++++.+.+.
T Consensus 12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHH
Confidence 57999986 99999999999999999999999988765544
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.062 Score=52.70 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=72.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcc-----hhhHHHHHHHHHhcCCC-CC
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCII-----RAVFLDRIKKAYQRNPN-LA 398 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciI-----rs~lL~~i~~~~~~~~~-~~ 398 (505)
.+.++.+|.++|.+.+..+..++|.+.+.++. ++|..+++++|+..-+| +|++.+ .+. +.
T Consensus 174 ~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~~i~~~~~~s~~~~--------~~~~~~ 239 (296)
T 3qha_A 174 PGAGTRMKLARNMLTFTSYAAACEAMKLAEAA------GLDLQALGRVVRHTDALTGGPGAIMVRD--------NMKDLE 239 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHCCGGGGCCCS--------SCSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHhhhcchHHHHhcCcccCHHhh--------chhhhh
Confidence 36789999999999999999999999998843 39999998887742222 332221 111 11
Q ss_pred CCcchhhHhH--HH-HhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010652 399 SLVVDPEFAR--EM-VQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 399 ~ll~~~~~~~--~~-~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (505)
. .++-|.- .. .-...+|+-++..|-+.|+|+|.+.++...|..
T Consensus 240 ~--~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~ 285 (296)
T 3qha_A 240 P--DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAA 285 (296)
T ss_dssp T--TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred c--CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1 2233332 01 345667889999999999999999999886643
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.022 Score=59.70 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=72.4
Q ss_pred CcEEEEccc----HHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLA----VMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG----~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+|+|||++ .+|..+..+|.+.| +.|+..|...+.+ . ++..+.|++|+.+. +|++++++|
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i---------~---G~~~y~sl~~lp~~---~Dlavi~vp 73 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV---------Q---GVKAYKSVKDIPDE---IDLAIIVVP 73 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE---------T---TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE---------C---CEeccCCHHHcCCC---CCEEEEecC
Confidence 579999998 89999999999985 6666666542211 1 36777888887665 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChh--h-----HHHHHHHHHHcCCeEEc
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYL--N-----TERRIHEASQKGLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~--~-----t~~~~~~l~~~gi~~v~ 130 (505)
.. .+.++++++...- ...+|+- +...++ + .+++.+.+++.|+.+++
T Consensus 74 ~~-~~~~~v~e~~~~G-i~~vv~~-s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG 126 (457)
T 2csu_A 74 KR-FVKDTLIQCGEKG-VKGVVII-TAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (457)
T ss_dssp HH-HHHHHHHHHHHHT-CCEEEEC-CCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred HH-HHHHHHHHHHHcC-CCEEEEe-cCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence 94 6777777766642 2334443 333322 2 44555666777888875
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.026 Score=60.64 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
++|.|+|+|.+|..+|..|.+.|++|.+.|.++++++++. . -+....+-+++.+ .++++|.++.+++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~-------~i~gD~t~~~~L~~agi~~ad~vi~~~~~d- 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-V-------VVYGDATVGQTLRQAGIDRASGIIVTTNDD- 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-C-------EEESCSSSSTHHHHHTTTSCSEEEECCSCH-
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-C-------EEEeCCCCHHHHHhcCccccCEEEEECCCc-
Confidence 6799999999999999999999999999999998765542 1 1222223333333 356799999998885
Q ss_pred hHHHHHHHHhhccCCC-CEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPG-DCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iiId~st~ 109 (505)
...-.+-.++..+.+. .+|.-..+.
T Consensus 420 ~~ni~~~~~ak~l~~~~~iiar~~~~ 445 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVARANGE 445 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEESST
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 3333334455556665 555555443
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.093 Score=49.25 Aligned_cols=91 Identities=9% Similarity=0.144 Sum_probs=56.7
Q ss_pred CCccCCC-cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASALS-RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~~-~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|+.++.. +|-|.| .|-+|..+++.|+++|++|.+.+|++++.+.+.+... +. .. .++.++
T Consensus 1 m~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~-~~---~~~~~~ 62 (248)
T 2pnf_A 1 MEIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIA--------------NK-YG---VKAHGV 62 (248)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH--------------HH-HC---CCEEEE
T ss_pred CccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH--------------hh-cC---CceEEE
Confidence 5433333 456666 5999999999999999999999999887665543210 00 01 222222
Q ss_pred --ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 --LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 --~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
=+.+...++..++++...+.+=++||++...
T Consensus 63 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~ 95 (248)
T 2pnf_A 63 EMNLLSEESINKAFEEIYNLVDGIDILVNNAGI 95 (248)
T ss_dssp ECCTTCHHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred EccCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 2333345666666666655555778876553
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.14 Score=48.66 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=56.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--CCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~~ 84 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... +... ..+..+..-+ .+..
T Consensus 14 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~--~~~~~~~~D~~~~~~~ 77 (252)
T 3f1l_A 14 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHIN--------------EETG--RQPQWFILDLLTCTSE 77 (252)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHHS--CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hhcC--CCceEEEEecccCCHH
Confidence 355566 4899999999999999999999999988776554321 0000 0133333333 3445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++.+.....+=|++|++...
T Consensus 78 ~~~~~~~~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 78 NCQQLAQRIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 5677777777666566788887654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.2 Score=50.19 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=37.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~ 49 (505)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.+
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG 216 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG 216 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC
Confidence 469999999999999888888999 8999999999887766554
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.067 Score=51.54 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=55.1
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCCc
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
++-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 66 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA----------------G---GTALAQVLDVTDRH 66 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCHH
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHH
Confidence 4556664 89999999999999999999999998877665432110 0 222222 234445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++.+++.+.....+=+++|++...
T Consensus 67 ~v~~~~~~~~~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 67 SVAAFAQAAVDTWGRIDVLVNNAGV 91 (264)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666666655555777776543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.052 Score=54.37 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=37.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~ 49 (505)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.+
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~G 212 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG 212 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC
Confidence 479999999999999999999999 9999999999887766554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.14 Score=45.23 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhhc-CCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSI-QRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~-~i~~~~s~~e~v~~l-~~advIil~vp~ 82 (505)
.+|.-+|+|. | .++..+++. +.+|++.|.+++.++.+.+.....+.. ++....+..+..... ...|+|++.-+.
T Consensus 27 ~~vldiG~G~-G-~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 27 ETLWDIGGGS-G-SIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEEESTTT-T-HHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CeEEEeCCCC-C-HHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 4789999996 4 455556655 678999999998877666542211100 233333443333332 458999987655
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
.. ..+++.+...|.+|..++-.. ..+.........+...+..+...
T Consensus 105 ~~--~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 105 TA--PGVFAAAWKRLPVGGRLVANA-VTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp TC--TTHHHHHHHTCCTTCEEEEEE-CSHHHHHHHHHHHHHHCCEEEEE
T ss_pred cH--HHHHHHHHHhcCCCCEEEEEe-eccccHHHHHHHHHHcCCeeEEE
Confidence 43 567788888888877666433 33445555666667767655443
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.0096 Score=60.71 Aligned_cols=101 Identities=13% Similarity=0.004 Sum_probs=66.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh-------hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT-------SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~-------~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
..||.|+|.|..|.++|+.+...|. +|+++|++- +++..+...-.... .......+++|+++. +|++|
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~-~~~~~~~~L~eav~~---ADV~I 263 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVT-NREFKSGTLEDALEG---ADIFI 263 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHH-SCTTCCCSCSHHHHT---TCSEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhcc-CcccchhhHHHHhcc---CCEEE
Confidence 3589999999999999999999999 999999873 11222111111000 001124578899987 99887
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhH
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t 114 (505)
=+..++... +++...+.++.||+++||-.|+-+
T Consensus 264 G~Sapgl~T----~EmVk~Ma~~pIIfalsNPt~E~~ 296 (398)
T 2a9f_A 264 GVSAPGVLK----AEWISKMAARPVIFAMANPIPEIY 296 (398)
T ss_dssp ECCSTTCCC----HHHHHTSCSSCEEEECCSSSCSSC
T ss_pred ecCCCCCCC----HHHHHhhCCCCEEEECCCCCccCC
Confidence 664433333 455556778999999999765443
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.088 Score=50.85 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=56.2
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.|+.+| | .|-+|..+|+.|++.|++|.+.+|+.++.+++.+... .. ...+-.=+.+..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~ 87 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----------------DD---ALCVPTDVTDPD 87 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----------------SC---CEEEECCTTSHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------CC---eEEEEecCCCHH
Confidence 355555 5 5899999999999999999999999988776654311 01 223333344445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++.+++.+.....+=|++|++...
T Consensus 88 ~v~~~~~~~~~~~g~iD~lVnnAg~ 112 (272)
T 4dyv_A 88 SVRALFTATVEKFGRVDVLFNNAGT 112 (272)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6777777776665556778876543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.083 Score=50.90 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+... .. ...+..=+.+...
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~ 65 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYP-----------------DR---AEAISLDVTDGER 65 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCT-----------------TT---EEEEECCTTCHHH
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------CC---ceEEEeeCCCHHH
Confidence 3455666 5999999999999999999999999887766554311 00 2233333444455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++.....+=+++|++...
T Consensus 66 ~~~~~~~~~~~~g~id~lv~~Ag~ 89 (281)
T 3m1a_A 66 IDVVAADVLARYGRVDVLVNNAGR 89 (281)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666676666655555788877653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=94.80 E-value=0.035 Score=53.42 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=49.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|.|. |.+|+.++..|++. |++|.+.+|++++.+.+...+.. +.. ..+.+++.+.++++|+||.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~-----~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVE-----VRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCe-----EEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 46889986 99999999999998 99999999998876655432211 111 1244445454556888887764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.093 Score=50.05 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=53.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.. .. ...+..=+.+...+
T Consensus 10 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 69 (255)
T 4eso_A 10 KAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----------------PR---VHALRSDIADLNEI 69 (255)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHHH
Confidence 456666 5899999999999999999999999988776654311 00 11222223344456
Q ss_pred HHHHHHHhhccCCCCEEEeCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+++.+.....+=|++|++..
T Consensus 70 ~~~~~~~~~~~g~id~lv~nAg 91 (255)
T 4eso_A 70 AVLGAAAGQTLGAIDLLHINAG 91 (255)
T ss_dssp HHHHHHHHHHHSSEEEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666666555544567776554
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.12 Score=49.96 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=55.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...+
T Consensus 7 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 66 (281)
T 3zv4_A 7 VALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG-----------------GN---AVGVVGDVRSLQDQ 66 (281)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB-----------------TT---EEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC-----------------Cc---EEEEEcCCCCHHHH
Confidence 455556 5899999999999999999999999988776654311 00 12222233444566
Q ss_pred HHHHHHHhhccCCCCEEEeCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+++++.....+=|++|++...
T Consensus 67 ~~~~~~~~~~~g~iD~lvnnAg~ 89 (281)
T 3zv4_A 67 KRAAERCLAAFGKIDTLIPNAGI 89 (281)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 77777776665566788877654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.17 Score=48.39 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=32.9
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.++..+
T Consensus 13 ~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (267)
T 3t4x_A 13 ALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIK 52 (267)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 44556 5899999999999999999999999987766554
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.099 Score=50.15 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=54.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+.. . .. ...+..=+.+.+.
T Consensus 7 k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~---------~~---~~~~~~D~~~~~~ 66 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL--------E---------AE---AIAVVADVSDPKA 66 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--------C---------SS---EEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------c---------Cc---eEEEEcCCCCHHH
Confidence 4566666 589999999999999999999999988776655421 0 00 1222222334445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++++.....+=|++|++..
T Consensus 67 v~~~~~~~~~~~g~iD~lvnnAg 89 (263)
T 2a4k_A 67 VEAVFAEALEEFGRLHGVAHFAG 89 (263)
T ss_dssp HHHHHHHHHHHHSCCCEEEEGGG
T ss_pred HHHHHHHHHHHcCCCcEEEECCC
Confidence 66666666655555577777654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.079 Score=49.46 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=35.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~ 48 (505)
++|-|.|. |-+|..+|+.|+++|++|.+.+|++++.+++.+.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 44 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNC 44 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 35777775 8999999999999999999999999887776653
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.019 Score=58.41 Aligned_cols=90 Identities=11% Similarity=0.161 Sum_probs=54.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCc---EEEEe-C-ChhHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFP---ISVYN-R-TTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~---V~v~d-r-~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil 78 (505)
++||+||| .|..|.-|.+.|.+++|. +.... + +..+.-.+ .+. .+... .+.++ ++++|+||+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~--~~~-----~~~~~~~~~~~----~~~~Dvvf~ 70 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKF--KDQ-----DITIEETTETA----FEGVDIALF 70 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEE--TTE-----EEEEEECCTTT----TTTCSEEEE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCccee--cCC-----CceEeeCCHHH----hcCCCEEEE
Confidence 46999999 699999999999998774 33332 2 21110000 000 11111 12222 234999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|+|.+ ...+....+ +..|..|||.|+.+
T Consensus 71 a~~~~-~s~~~a~~~---~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 71 SAGSS-TSAKYAPYA---VKAGVVVVDNTSYF 98 (366)
T ss_dssp CSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCChH-hHHHHHHHH---HHCCCEEEEcCCcc
Confidence 99875 344444444 34688999999864
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.085 Score=50.41 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=57.2
Q ss_pred CcEEEEcc-cH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCC
Q 010652 7 SRIGLAGL-AV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 7 ~~IgiIGl-G~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
+++-|.|. |. +|..+|+.|+++|++|++.+|+.++.++..+..... ...++.++ =+.+
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------------------~~~~~~~~~~Dl~~ 84 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL------------------GLGRVEAVVCDVTS 84 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------------------CSSCEEEEECCTTC
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------------------CCCceEEEEeCCCC
Confidence 34777798 74 999999999999999999999998876655432110 00223322 3344
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
...++++++++.....+=+++|++...
T Consensus 85 ~~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 85 TEAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 456677777776655555788876653
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.023 Score=57.14 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=54.1
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCC---cEEEE-eCC-hhHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEE
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKGF---PISVY-NRT-TSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G~---~V~v~-dr~-~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIi 77 (505)
|++||+|+| .|.+|+.+.+.|.+++| ++... +++ ..+.-.+ .+. .+... .++++ .. ++|+||
T Consensus 5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~--~g~-----~i~~~~~~~~~-~~---~~DvV~ 73 (340)
T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGF--AES-----SLRVGDVDSFD-FS---SVGLAF 73 (340)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEE--TTE-----EEECEEGGGCC-GG---GCSEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCcccc--CCc-----ceEEecCCHHH-hc---CCCEEE
Confidence 347999999 79999999999997665 44544 433 2110000 000 12221 12222 23 499999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+|+|.. ...+....+ +..|..+||.|..+
T Consensus 74 ~a~g~~-~s~~~a~~~---~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 74 FAAAAE-VSRAHAERA---RAAGCSVIDLSGAL 102 (340)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred EcCCcH-HHHHHHHHH---HHCCCEEEEeCCCC
Confidence 999875 334444433 34678899998765
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.12 Score=48.76 Aligned_cols=84 Identities=10% Similarity=0.137 Sum_probs=56.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEecCCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~ 83 (505)
+++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+..... . .++ +..=+.+.
T Consensus 6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~ 66 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK----------------G---FKARGLVLNISDI 66 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CceEEEEecCCCH
Confidence 3466666 589999999999999999999999998877665432110 0 222 22233444
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++++++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 67 ESIQNFFAEIKAENLAIDILVNNAGI 92 (247)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 56777777777665556788887654
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.11 Score=50.24 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=53.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 24 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~~~~ 84 (277)
T 2rhc_B 24 VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA----------------G---VEADGRTCDVRSVP 84 (277)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CceEEEECCCCCHH
Confidence 466666 599999999999999999999999988766554321100 0 222222 233444
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++.+++.+...+.+=|++|++..
T Consensus 85 ~v~~~~~~~~~~~g~iD~lv~~Ag 108 (277)
T 2rhc_B 85 EIEALVAAVVERYGPVDVLVNNAG 108 (277)
T ss_dssp HHHHHHHHHHHHTCSCSEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 566666666665555577777654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.13 Score=49.71 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=54.3
Q ss_pred CcEEEEcc-cH--HHHHHHHHHHhCCCcEEEEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AV--MGQNLALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~--mG~~lA~~La~~G~~V~v~dr~~--~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++-|.|. |. +|..+|+.|++.|++|.+.+|+. +..+++.+... +...+..=+.
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~---------------------~~~~~~~Dl~ 85 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFN---------------------PAAVLPCDVI 85 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGC---------------------CSEEEECCTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcC---------------------CceEEEeecC
Confidence 34666675 56 99999999999999999999987 44444433211 1223333344
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.+.++++++++.....+=+++|++....
T Consensus 86 ~~~~v~~~~~~~~~~~g~id~li~nAg~~ 114 (280)
T 3nrc_A 86 SDQEIKDLFVELGKVWDGLDAIVHSIAFA 114 (280)
T ss_dssp CHHHHHHHHHHHHHHCSSCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 44567777777776665567788776543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.15 Score=51.77 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=60.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--c---EEEEeCChhH----HH----HHHHhhcccCCCCeeeeCCHHHHHhhcCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGF--P---ISVYNRTTSK----VD----ETLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~--~---V~v~dr~~~~----~~----~~~~~~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
+||+|+| .|.+|.+++..|+..+. + |.++|.+.++ ++ ++.. ....-..++....+..+..++
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h-~~~p~~~~v~i~~~~y~~~~d--- 108 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELED-SLYPLLREVSIGIDPYEVFED--- 108 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT-TTCTTEEEEEEESCHHHHTTT---
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHh-hhhhhcCCcEEecCCHHHhCC---
Confidence 5899999 79999999999998875 2 7776543332 22 2221 110000024455555555555
Q ss_pred CcEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 73 PRSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 73 advIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
+|+||++--.+ . .++++.+.+.....++.+|+..|| |-++.
T Consensus 109 aDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN--PvD~~ 164 (375)
T 7mdh_A 109 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTN 164 (375)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhHH
Confidence 99999975221 1 123333455555456778888876 44543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.063 Score=50.28 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=48.4
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEe
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~ 79 (505)
++++|.|.| .|.+|..++..|+++ |++|++.+|++++.+.+. .. ...... .+.+++.+.++++|+||.+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~-~~-----~~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG-GE-----ADVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT-CC-----TTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC-CC-----eeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 346899998 599999999999999 899999999988765441 11 011111 2334443434458888877
Q ss_pred cC
Q 010652 80 VK 81 (505)
Q Consensus 80 vp 81 (505)
..
T Consensus 77 a~ 78 (253)
T 1xq6_A 77 TS 78 (253)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.12 Score=51.93 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=30.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEE-EeC-ChhHHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISV-YNR-TTSKVDETL 46 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G---~~V~v-~dr-~~~~~~~~~ 46 (505)
+.||||+|.|.+|+.+.+.|.+++ ++|.. .|+ +++....+.
T Consensus 2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~ 47 (339)
T 3b1j_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHh
Confidence 358999999999999999999873 56654 455 455444444
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.096 Score=49.55 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=56.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCCc
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
++-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.++.... . .++.++ =+.+..
T Consensus 11 ~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD----------------G---GTAISVAVDVSDPE 71 (253)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCHH
Confidence 4666674 99999999999999999999999998877665432110 0 223322 234445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++.+.....+=+++|++...
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 72 SAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5667777776666566788887654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.1 Score=50.97 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=50.5
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC------------hhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRT------------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~------------~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
+-|.| .|-+|..+|+.|++.|++|.+.||+ +++.++..+.. ... ..++
T Consensus 31 ~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--~~~~ 91 (299)
T 3t7c_A 31 AFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV-----------------EAL--GRRI 91 (299)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHH-----------------HHT--TCCE
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHH-----------------Hhc--CCce
Confidence 55556 5889999999999999999999987 34333332211 000 1233
Q ss_pred EEE--ecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 76 VII--LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 76 Iil--~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++ =+.+...++.+++++...+.+=|++|++..
T Consensus 92 ~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 92 IASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 333 234445566777776665555577777654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.13 Score=52.10 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhc-CCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI-QRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l-~~advIil~vp~~~~ 85 (505)
.+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.+.. .....+.++.++.+ ...|+||-++.....
T Consensus 196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~-----~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~ 270 (369)
T 1uuf_A 196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD-----EVVNSRNADEMAAHLKSFDFILNTVAAPHN 270 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS-----EEEETTCHHHHHTTTTCEEEEEECCSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc-----EEeccccHHHHHHhhcCCCEEEECCCCHHH
Confidence 469999999999999988888999999999999998877765542 12222223333333 357999999976544
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++. ....+.++-.++..+..
T Consensus 271 ~~~----~~~~l~~~G~iv~~G~~ 290 (369)
T 1uuf_A 271 LDD----FTTLLKRDGTMTLVGAP 290 (369)
T ss_dssp HHH----HHTTEEEEEEEEECCCC
T ss_pred HHH----HHHHhccCCEEEEeccC
Confidence 443 34455555566665543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=94.63 E-value=0.13 Score=48.73 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=54.9
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHH
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... . ...+-.=+.+.+.++
T Consensus 12 ~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~d~~~v~ 71 (248)
T 3op4_A 12 ALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD-----------------N---GKGMALNVTNPESIE 71 (248)
T ss_dssp EEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----------------c---ceEEEEeCCCHHHHH
Confidence 44556 58999999999999999999999999887766543211 0 112222234445677
Q ss_pred HHHHHHhhccCCCCEEEeCCCC
Q 010652 88 QTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++++.....+=|++|++...
T Consensus 72 ~~~~~~~~~~g~iD~lv~nAg~ 93 (248)
T 3op4_A 72 AVLKAITDEFGGVDILVNNAGI 93 (248)
T ss_dssp HHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 7777776666556788876553
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.12 Score=52.51 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEEE-eC-ChhHHHHHHHhhcccCCC----------------Ceee--eCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISVY-NR-TTSKVDETLDRAHREGQL----------------PLTG--HYT 62 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G---~~V~v~-dr-~~~~~~~~~~~~~~~g~~----------------~i~~--~~s 62 (505)
+.||||+|.|.+|+.+.+.|.+++ ++|... |+ +++....+.+.....|.+ .+.. ..+
T Consensus 2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (380)
T 2d2i_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (380)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence 358999999999999999998873 566544 54 445444444321111100 1111 234
Q ss_pred HHHHH-hhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 63 PRDFV-LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 63 ~~e~v-~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++. .+ .++|+||.|++..... +.....+.. ....+|||.+..
T Consensus 82 p~~l~w~~-~gvDvV~e~TG~f~s~-e~a~~hl~a-GakkVVIs~ps~ 126 (380)
T 2d2i_A 82 PLNLPWKE-WDIDLVIESTGVFVTA-EGASKHIQA-GAKKVLITAPGK 126 (380)
T ss_dssp GGGCCHHH-HTCCEEEECSSSCCBH-HHHHHHHHT-TCSEEEESSCCB
T ss_pred hHHCCccc-CCCCEEEECCCccccH-HHHHHHHHc-CCcEEEEcCCCC
Confidence 55432 10 0378999998876443 333333321 122357877653
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.094 Score=52.65 Aligned_cols=100 Identities=9% Similarity=0.103 Sum_probs=56.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHh---C-CCcEEEE-eC-ChhHHHHHHHhhcccCCC----------------Ceeee--C
Q 010652 6 LSRIGLAGLAVMGQNLALNVAE---K-GFPISVY-NR-TTSKVDETLDRAHREGQL----------------PLTGH--Y 61 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~---~-G~~V~v~-dr-~~~~~~~~~~~~~~~g~~----------------~i~~~--~ 61 (505)
+.||||+|.|.+|+.+.+.|.+ + .++|... |+ +++....+.+.....|.+ .+... .
T Consensus 2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 81 (339)
T 2x5j_O 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHER 81 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecC
Confidence 3589999999999999999988 4 5666544 54 455554554311000000 12222 3
Q ss_pred CHHHHH-hhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 62 TPRDFV-LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 62 s~~e~v-~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+++++. .+ .++|+||.|+|..... +.....+.. ....+|||.+.
T Consensus 82 dp~~l~~~~-~~vDvV~e~tg~~~s~-e~a~~~l~~-GakkVVId~~a 126 (339)
T 2x5j_O 82 SLQSLPWRE-LGVDVVLDCTGVYGSR-EHGEAHIAA-GAKKVLFSHPG 126 (339)
T ss_dssp SGGGCCHHH-HTCSEEEECSSSCCSH-HHHHHHHHT-TCSEEEESSCC
T ss_pred ChHHCcccc-cCCCEEEECCCccccH-HHHHHHHHc-CCCEEEEeccc
Confidence 455431 10 0389999999987543 333333332 12236888776
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.16 Score=51.99 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=37.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.++
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa 259 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA 259 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 469999999999999988888999 89999999998887766553
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.12 Score=49.59 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=54.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .++.+ .=+.+..
T Consensus 29 ~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~d~~ 86 (266)
T 3grp_A 29 KALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG----------------------KDVFVFSANLSDRK 86 (266)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----------------------SSEEEEECCTTSHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEeecCCHH
Confidence 355555 5899999999999999999999999888776554211 12222 2234445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.++++++.+.....+=|++|++....
T Consensus 87 ~v~~~~~~~~~~~g~iD~lvnnAg~~ 112 (266)
T 3grp_A 87 SIKQLAEVAEREMEGIDILVNNAGIT 112 (266)
T ss_dssp HHHHHHHHHHHHHTSCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 56667776666555557888776543
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.15 Score=48.52 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=55.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |-+|..+|+.|+++|++|.+.+|++++.+++.++... . ...+..=+.+...
T Consensus 10 k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~ 69 (261)
T 3n74_A 10 KVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGD-----------------A---ALAVAADISKEAD 69 (261)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---EEEEECCTTSHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC-----------------c---eEEEEecCCCHHH
Confidence 34667775 8899999999999999999999999887776543210 0 1222223344455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++++.+...+.+=+++|++...
T Consensus 70 ~~~~~~~~~~~~g~id~li~~Ag~ 93 (261)
T 3n74_A 70 VDAAVEAALSKFGKVDILVNNAGI 93 (261)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCcc
Confidence 666676666655555777776543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.11 Score=50.19 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=55.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~~ 84 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.+ .=+.+.+
T Consensus 26 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 86 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA----------------G---HDVDGSSCDVTSTD 86 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCHH
Confidence 355666 589999999999999999999999998877665432110 0 22322 2334445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++.+++.+.....+=+++|++...
T Consensus 87 ~v~~~~~~~~~~~g~id~lv~nAg~ 111 (279)
T 3sju_A 87 EVHAAVAAAVERFGPIGILVNSAGR 111 (279)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCC
Confidence 6677777776665555778876543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.35 Score=44.33 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-Ceee-eCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-PLTG-HYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~-~i~~-~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.-||+|. | .++..+++.+.+|+++|.+++.++.+.+.....|-. ++.. ..+..+........|+|++....
T Consensus 57 ~~vLDlGcG~-G-~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-- 132 (204)
T 3njr_A 57 ELLWDIGGGS-G-SVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-- 132 (204)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC--
T ss_pred CEEEEecCCC-C-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc--
Confidence 4688999986 4 355566666899999999999887665542211100 2322 34555544444458999976533
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
..+ +++.+...|.+|-.++-. +..+.+..+..+.+.+.|.....
T Consensus 133 ~~~-~l~~~~~~LkpgG~lv~~-~~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 133 SQA-LYDRLWEWLAPGTRIVAN-AVTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp CHH-HHHHHHHHSCTTCEEEEE-ECSHHHHHHHHHHHHHHCSEEEE
T ss_pred cHH-HHHHHHHhcCCCcEEEEE-ecCcccHHHHHHHHHhCCCcEEE
Confidence 345 788888888887655543 23345666777777777755444
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.029 Score=57.10 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=32.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
..+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 35799999999999999999999999999998754
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.13 Score=48.12 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=35.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
++|-|.|. |-+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 8 ~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46778875 999999999999999999999999887766543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.18 Score=47.48 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=33.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
++-|.| .|-+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 13 ~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (254)
T 2wsb_A 13 CAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ 53 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 466676 5999999999999999999999999887665543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.078 Score=50.06 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=53.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKA 82 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~-~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~ 82 (505)
++|-|.| .|-+|..+++.|+++|++|.+.+|+ +++.+++.+.... .. .++.+ .=+.+
T Consensus 8 k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~~ 68 (258)
T 3afn_B 8 KRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRA----------------DG---GDAAFFAADLAT 68 (258)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHH----------------TT---CEEEEEECCTTS
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHh----------------cC---CceEEEECCCCC
Confidence 4566666 5999999999999999999999998 7666554432110 00 22222 22333
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
...++.+++++.....+=++||++...
T Consensus 69 ~~~~~~~~~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 69 SEACQQLVDEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345666666666555455778876653
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.025 Score=57.85 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=60.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~---~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..||-|||. |+.|.+-+..+..-|. .|++||+++.+ .+. + .+++. . +|+||-++.
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~-----~------~~~i~-~---aDivIn~vl 272 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGG-----P------FDEIP-Q---ADIFINCIY 272 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCS-----C------CTHHH-H---SSEEEECCC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCC-----c------hhhHh-h---CCEEEECcC
Confidence 458999999 9999999999999998 99999988632 121 1 13343 4 999999998
Q ss_pred CCchHHHHH-HHHhhcc-CCCCEEEeCCCC
Q 010652 82 AGSPVDQTI-AALSEHM-SPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~~v~~vl-~~l~~~l-~~g~iiId~st~ 109 (505)
-+...-.++ ++.+..+ ++|.+|||.+.-
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA~D 302 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVSAD 302 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETTCC
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEecC
Confidence 643221222 5666778 899999999753
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.094 Score=50.02 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=55.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~d~~ 74 (256)
T 3gaf_A 14 VAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA----------------G---GKAIGLECNVTDEQ 74 (256)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCHH
Confidence 344555 589999999999999999999999998877655432110 0 233322 334445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++.+.....+=|++|++...
T Consensus 75 ~v~~~~~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 75 HREAVIKAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5677777776665556788876543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.16 Score=48.47 Aligned_cols=87 Identities=13% Similarity=0.155 Sum_probs=53.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+++.|++.|++|.+.+|++++.++..+..... . .. .. ...+..=+.+...+
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~----~~----~~---~~~~~~D~~~~~~v 73 (267)
T 2gdz_A 9 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ----F----EP----QK---TLFIQCDVADQQQL 73 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT----S----CG----GG---EEEEECCTTSHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----c----CC----Cc---eEEEecCCCCHHHH
Confidence 466777 599999999999999999999999988766544321100 0 00 00 11222223344456
Q ss_pred HHHHHHHhhccCCCCEEEeCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+++.+...+.+=|++|++...
T Consensus 74 ~~~~~~~~~~~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 74 RDTFRKVVDHFGRLDILVNNAGV 96 (267)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666666555555778776654
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.15 Score=49.38 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=27.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRT 38 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~ 38 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.||+
T Consensus 13 ~~lVTGas~gIG~aia~~la~~G~~V~~~~~~ 44 (286)
T 3uve_A 13 VAFVTGAARGQGRSHAVRLAQEGADIIAVDIC 44 (286)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence 355566 4889999999999999999999988
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.11 Score=49.37 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=54.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
+.+-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+... .++.+ .=+.+.
T Consensus 7 k~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~~~ 64 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG----------------------KKARAIAADISDP 64 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC----------------------TTEEECCCCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEcCCCCH
Confidence 34666664 899999999999999999999999988776654321 11111 112333
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.++++++.+.....+=|++|++...
T Consensus 65 ~~v~~~~~~~~~~~g~id~lv~nAg~ 90 (247)
T 3rwb_A 65 GSVKALFAEIQALTGGIDILVNNASI 90 (247)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 45666666666655555777776553
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.14 Score=50.17 Aligned_cols=83 Identities=10% Similarity=0.101 Sum_probs=56.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEecCCCc
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAGS 84 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~~ 84 (505)
.|-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++ +..=+.+..
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 93 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ----------------G---FDAHGVVCDVRHLD 93 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CceEEEEccCCCHH
Confidence 4667775 89999999999999999999999998877665432110 1 223 223334445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++.+.....+=+++|++...
T Consensus 94 ~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 94 EMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 5666777766655555778876553
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.16 Score=48.26 Aligned_cols=84 Identities=14% Similarity=0.229 Sum_probs=53.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
++-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+... +.... .++.++ =+.+..
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~~~D~~~~~ 71 (260)
T 2z1n_A 9 LAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIA--------------SLVSG---AQVDIVAGDIREPG 71 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHSTT---CCEEEEECCTTCHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hcCCC---CeEEEEEccCCCHH
Confidence 466666 5899999999999999999999999887665543210 00000 122222 234444
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++.+++.+..... =|++|++...
T Consensus 72 ~v~~~~~~~~~~~g-id~lv~~Ag~ 95 (260)
T 2z1n_A 72 DIDRLFEKARDLGG-ADILVYSTGG 95 (260)
T ss_dssp HHHHHHHHHHHTTC-CSEEEECCCC
T ss_pred HHHHHHHHHHHhcC-CCEEEECCCC
Confidence 56666776666554 4777776543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.11 Score=50.01 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=51.4
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-------------ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNR-------------TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr-------------~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
+-|.| .|-+|..+|+.|++.|++|.+.|| +.++.++..+... .. ..+
T Consensus 14 ~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--~~~ 74 (277)
T 3tsc_A 14 AFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVE-----------------AA--NRR 74 (277)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHH-----------------HT--TCC
T ss_pred EEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHH-----------------hc--CCe
Confidence 55556 589999999999999999999998 4444443332210 00 123
Q ss_pred EEEE--ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 75 SVII--LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 75 vIil--~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.++ =+.+...++++++++.....+=|++|++...
T Consensus 75 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 75 IVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3333 2344455666777766665556788876543
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.015 Score=58.43 Aligned_cols=90 Identities=9% Similarity=0.106 Sum_probs=54.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC---CcEEEEe-CC-hhHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKG---FPISVYN-RT-TSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G---~~V~v~d-r~-~~~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil 78 (505)
++||+|+| .|.+|+.+.+.|.+++ ++|...+ ++ ..+.-.+ .+. .+...+ +++++ . ++|+||+
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~--~~~-----~i~~~~~~~~~~-~---~vDvVf~ 71 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRF--NGK-----TVRVQNVEEFDW-S---QVHIALF 71 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEE--TTE-----EEEEEEGGGCCG-G---GCSEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceee--cCc-----eeEEecCChHHh-c---CCCEEEE
Confidence 47999999 8999999999999884 3565554 32 2110000 000 122211 22222 3 3999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|+|.. ...+....+ +..|..+||.|+.+
T Consensus 72 a~g~~-~s~~~a~~~---~~~G~~vId~s~~~ 99 (336)
T 2r00_A 72 SAGGE-LSAKWAPIA---AEAGVVVIDNTSHF 99 (336)
T ss_dssp CSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCCch-HHHHHHHHH---HHcCCEEEEcCCcc
Confidence 99885 334444433 44688999998864
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.27 Score=46.95 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=55.1
Q ss_pred CcEEE-Eccc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE--EEec
Q 010652 7 SRIGL-AGLA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV--IILV 80 (505)
Q Consensus 7 ~~Igi-IGlG---~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI--il~v 80 (505)
-|+.+ -|.+ -+|..+|+.|++.|++|.+.+|+++..+++.+.... +...++. -.=|
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~------------------~~~~~~~~~~~Dv 67 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQ------------------LNQPEAHLYQIDV 67 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGG------------------GTCSSCEEEECCT
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------------------cCCCcEEEEEccC
Confidence 35554 4863 499999999999999999999998877665543211 1112222 2234
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.++++++++++.....+=|++|+...
T Consensus 68 ~~~~~v~~~~~~~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 68 QSDEEVINGFEQIGKDVGNIDGVYHSIA 95 (256)
T ss_dssp TCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEeccc
Confidence 5556677777777776666677776543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.17 Score=53.03 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=77.3
Q ss_pred CcEEEEcccH----------HHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHh-------hcccCCCCeeeeCCHHHHH
Q 010652 7 SRIGLAGLAV----------MGQNLALNVAEKGFPISVYNRTTSK--VDETLDR-------AHREGQLPLTGHYTPRDFV 67 (505)
Q Consensus 7 ~~IgiIGlG~----------mG~~lA~~La~~G~~V~v~dr~~~~--~~~~~~~-------~~~~g~~~i~~~~s~~e~v 67 (505)
.+|+|+|+.. -...++..|.+.|.+|.+||..-.. ....... .... ++..+.++.+.+
T Consensus 330 ~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 406 (467)
T 2q3e_A 330 KKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSR---LVTISKDPYEAC 406 (467)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHH---HEEECSSHHHHH
T ss_pred CEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccC---ceeecCCHHHHH
Confidence 5799999975 7889999999999999999986322 1111100 0000 245667888887
Q ss_pred hhcCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 68 LSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
+. +|.|++++... +.+.. .+.+...+....+|+|+-|.... ..+.+...|+.|.+.+
T Consensus 407 ~~---ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~r~~~~~----~~~~~~~~g~~~~~ig 464 (467)
T 2q3e_A 407 DG---AHAVVICTEWD-MFKELDYERIHKKMLKPAFIFDGRRVLDG----LHNELQTIGFQIETIG 464 (467)
T ss_dssp TT---CSEEEECSCCG-GGGGSCHHHHHHHSCSSCEEEESSCTTTT----CHHHHHHHTCEEEETT
T ss_pred hC---CcEEEEecCCh-hhhcCCHHHHHHhcCCCCEEEeCCCcCCc----hHHHHHhcCcEEEEeC
Confidence 76 99999999885 34322 34566666555669999998743 1223455688888754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.075 Score=48.40 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=35.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
.+|.|+| .|.+|..++..+...|.+|++.++++++.+.+.+
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~ 81 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR 81 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4688999 6999999999999999999999999887765543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.16 Score=49.09 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=53.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++... + ...+-.=+.+...+
T Consensus 29 ~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~----------------~~~~~~Dv~d~~~v 88 (277)
T 4dqx_A 29 VCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGS----K----------------AFGVRVDVSSAKDA 88 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCT----T----------------EEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC----c----------------eEEEEecCCCHHHH
Confidence 355556 58999999999999999999999999887766543110 0 11122223344456
Q ss_pred HHHHHHHhhccCCCCEEEeCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st 108 (505)
+++++.+.....+=+++|++..
T Consensus 89 ~~~~~~~~~~~g~iD~lv~nAg 110 (277)
T 4dqx_A 89 ESMVEKTTAKWGRVDVLVNNAG 110 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666666655555577777654
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.033 Score=56.47 Aligned_cols=94 Identities=7% Similarity=0.136 Sum_probs=56.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEE-EeCCh--hHHHHHHHh--------hcccCCCCeeeeCCHHHHHhhcCC
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISV-YNRTT--SKVDETLDR--------AHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~-~V~v-~dr~~--~~~~~~~~~--------~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
++|||||| .|..|.-|.+.|.++-+ ++.. ..++. .++...... +..+ ..+. ..+.+++ + +
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~--~~v~-~~~~~~~-~---~ 79 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIAD--MEIK-PTDPKLM-D---D 79 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHT--CBCE-ECCGGGC-T---T
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccccccccccccccc--ceEE-eCCHHHh-c---C
Confidence 46899999 69999999998887653 5543 34333 123221000 0000 0121 1233333 3 4
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+|+||+|+|.+. ..+....+. ..|..+||.|+.+
T Consensus 80 vDvvf~a~p~~~-s~~~a~~~~---~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 80 VDIIFSPLPQGA-AGPVEEQFA---KEGFPVISNSPDH 113 (359)
T ss_dssp CCEEEECCCTTT-HHHHHHHHH---HTTCEEEECSSTT
T ss_pred CCEEEECCChHH-HHHHHHHHH---HCCCEEEEcCCCc
Confidence 999999999974 445544443 4689999999865
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.033 Score=56.47 Aligned_cols=94 Identities=7% Similarity=0.136 Sum_probs=56.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEE-EeCCh--hHHHHHHHh--------hcccCCCCeeeeCCHHHHHhhcCC
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISV-YNRTT--SKVDETLDR--------AHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~-~V~v-~dr~~--~~~~~~~~~--------~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
++|||||| .|..|.-|.+.|.++-+ ++.. ..++. .++...... +..+ ..+. ..+.+++ + +
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~--~~v~-~~~~~~~-~---~ 79 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIAD--MEIK-PTDPKLM-D---D 79 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHT--CBCE-ECCGGGC-T---T
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccccccccccccccc--ceEE-eCCHHHh-c---C
Confidence 46899999 69999999998887653 5543 34333 123221000 0000 0121 1233333 3 4
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+|+||+|+|.+. ..+....+. ..|..+||.|+.+
T Consensus 80 vDvvf~a~p~~~-s~~~a~~~~---~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 80 VDIIFSPLPQGA-AGPVEEQFA---KEGFPVISNSPDH 113 (359)
T ss_dssp CCEEEECCCTTT-HHHHHHHHH---HTTCEEEECSSTT
T ss_pred CCEEEECCChHH-HHHHHHHHH---HCCCEEEEcCCCc
Confidence 999999999974 445544443 4689999999865
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.12 Score=49.67 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=53.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+++.|+++|++|.+.+|++++.+++.+..... . .. -.. ...+..=+.+...+
T Consensus 8 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~--~~----~~~---~~~~~~D~~~~~~~ 73 (278)
T 1spx_A 8 VAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAA-----G--VS----EQN---VNSVVADVTTDAGQ 73 (278)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----T--CC----GGG---EEEEECCTTSHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----c--cC----CCc---eeEEecccCCHHHH
Confidence 455556 599999999999999999999999988776654432000 0 00 000 11222223344456
Q ss_pred HHHHHHHhhccCCCCEEEeCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+++.+.....+=|++|++...
T Consensus 74 ~~~~~~~~~~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 74 DEILSTTLGKFGKLDILVNNAGA 96 (278)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666666555455788877654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.2 Score=47.70 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=54.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+... . . ...+..=+.+...
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~------~---~~~~~~D~~d~~~ 72 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-----------N------G---GFAVEVDVTKRAS 72 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT-----------T------C---CEEEECCTTCHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-----------c------C---CeEEEEeCCCHHH
Confidence 3566777 5899999999999999999999999887665543210 0 1 2222223344445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++++++.+.....+=|++|++..
T Consensus 73 v~~~~~~~~~~~g~iD~lv~~Ag 95 (263)
T 3ak4_A 73 VDAAMQKAIDALGGFDLLCANAG 95 (263)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555545577777654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.16 Score=49.17 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=53.4
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHH
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... . ...+-.=+.+.+.++
T Consensus 32 vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~d~~~v~ 91 (277)
T 3gvc_A 32 AIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGC-----------------G---AAACRVDVSDEQQII 91 (277)
T ss_dssp EEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCS-----------------S---CEEEECCTTCHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC-----------------c---ceEEEecCCCHHHHH
Confidence 44555 58999999999999999999999999887766543110 0 222222334445566
Q ss_pred HHHHHHhhccCCCCEEEeCCCC
Q 010652 88 QTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++.+.....+=|++|++...
T Consensus 92 ~~~~~~~~~~g~iD~lvnnAg~ 113 (277)
T 3gvc_A 92 AMVDACVAAFGGVDKLVANAGV 113 (277)
T ss_dssp HHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 6666666655555777776543
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.088 Score=54.92 Aligned_cols=109 Identities=14% Similarity=0.250 Sum_probs=76.7
Q ss_pred CcEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 7 SRIGLAGLA----------VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgiIGlG----------~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
.+|+|+|+. .-...++..|.+.|.+|.+||..-. +...... . ++..+.+++++++. +|.|
T Consensus 323 ~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~--~~~~~~~--~---~~~~~~~~~~~~~~---ad~v 392 (446)
T 4a7p_A 323 KTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV--EQASKML--T---DVEFVENPYAAADG---ADAL 392 (446)
T ss_dssp CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH--HHHGGGC--S---SCCBCSCHHHHHTT---BSEE
T ss_pred CEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC--HhHHHhc--C---CceEecChhHHhcC---CCEE
Confidence 589999997 5678999999999999999998753 2222211 0 35667888888887 9999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
++++...+.-+--.+.+...+. +.+|+|+-|..... .+.+.|+.|.+.+
T Consensus 393 vi~t~~~~f~~~d~~~~~~~~~-~~~i~D~r~~~~~~------~~~~~g~~y~~iG 441 (446)
T 4a7p_A 393 VIVTEWDAFRALDLTRIKNSLK-SPVLVDLRNIYPPA------ELERAGLQYTGVG 441 (446)
T ss_dssp EECSCCTTTTSCCHHHHHTTBS-SCBEECSSCCSCHH------HHHHTTCBCCCSS
T ss_pred EEeeCCHHhhcCCHHHHHHhcC-CCEEEECCCCCCHH------HHHhcCCEEEEec
Confidence 9999875421111345555553 56899999987532 3356688887654
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.17 Score=53.31 Aligned_cols=110 Identities=20% Similarity=0.252 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEe--
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIIL-- 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~-- 79 (505)
.++|.|||+|..|.+ +|+.|.+.|++|+++|..... .+.+.+.+ +... .+.+. + +++|.||..
T Consensus 19 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~-~---~~a~~vv~s~~ 87 (491)
T 2f00_A 19 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLG-------ATIYFNHRPEN-V---RDASVVVVSSA 87 (491)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTT-------CEEESSCCGGG-G---TTCSEEEECTT
T ss_pred CCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCC-------CEEECCCCHHH-c---CCCCEEEECCC
Confidence 357999999999997 999999999999999987643 33444333 2222 23322 2 348988875
Q ss_pred cCCCch-HHHH----------HHHHhhccCC-CCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 80 VKAGSP-VDQT----------IAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 80 vp~~~~-v~~v----------l~~l~~~l~~-g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
+|...+ +... .+.+...+.. .-|-|-+||+...++.-+...+...|.
T Consensus 88 i~~~~p~~~~a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 146 (491)
T 2f00_A 88 ISADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGL 146 (491)
T ss_dssp CCTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 232211 2211 1222233322 235566777777666667777877774
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.12 Score=48.88 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=32.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHH
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr-~~~~~~~~~ 46 (505)
++|-|.| .|-+|..++..|+++|++|++.+| ++++.+++.
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (261)
T 1gee_A 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVL 49 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 3566666 599999999999999999999999 776655544
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.17 Score=47.43 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=54.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.| .|-+|..++..|+++|++|.+.+|++++.+++.+..... . -.. ..++..=+.+...
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------~----~~~---~~~~~~D~~~~~~ 66 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHA---------Y----ADK---VLRVRADVADEGD 66 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTT---------T----GGG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---------c----CCc---EEEEEecCCCHHH
Confidence 4577777 599999999999999999999999988776654431000 0 001 1222222333345
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++++++++...+.+=++||++..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~Ag 89 (250)
T 2cfc_A 67 VNAAIAATMEQFGAIDVLVNNAG 89 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 66666666555545577777654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.15 Score=48.86 Aligned_cols=84 Identities=7% Similarity=0.107 Sum_probs=55.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
++|-|.| .|-+|..++..|++.|++|++.+|++++.+++.++.... . .++.+ .=+.+.
T Consensus 32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dl~~~ 92 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----------------G---AKVHTFVVDCSNR 92 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc----------------C---CeEEEEEeeCCCH
Confidence 3577777 599999999999999999999999988766554321100 0 22222 223344
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++.+++.+.....+=++||++...
T Consensus 93 ~~v~~~~~~~~~~~g~iD~li~~Ag~ 118 (272)
T 1yb1_A 93 EDIYSSAKKVKAEIGDVSILVNNAGV 118 (272)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCc
Confidence 45666667666655555788887653
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.042 Score=53.03 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=33.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
+|+|.|.|+|.+|+.++..|+++|++|++.+|++++
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 468999999999999999999999999999999765
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.16 Score=49.36 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=56.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... . .++.++ =+.+..
T Consensus 30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 90 (283)
T 3v8b_A 30 VALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA----------------G---GQAIALEADVSDEL 90 (283)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCHH
Confidence 355566 589999999999999999999999998877665532110 0 233332 234445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++.+++++.....+=|++|++...
T Consensus 91 ~v~~~~~~~~~~~g~iD~lVnnAg~ 115 (283)
T 3v8b_A 91 QMRNAVRDLVLKFGHLDIVVANAGI 115 (283)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 6777777776666556788876553
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.13 Score=49.84 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=56.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... . .+...+..=+.+...+
T Consensus 34 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~-~~~~~~~~Dl~d~~~v 96 (276)
T 3r1i_A 34 RALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV----------------G-GKALPIRCDVTQPDQV 96 (276)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT----------------T-CCCEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C-CeEEEEEcCCCCHHHH
Confidence 455666 589999999999999999999999988776655432110 0 0022222234444567
Q ss_pred HHHHHHHhhccCCCCEEEeCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+++++++.....+=|++|++...
T Consensus 97 ~~~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 97 RGMLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 77777776665556788876544
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.14 Score=49.31 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=54.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+|+.|+++|++|++.+|++++.+++.+.....+ ... .. ...+..=+.+...+
T Consensus 8 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~----~~---~~~~~~Dv~~~~~v 73 (280)
T 1xkq_A 8 TVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG-------VSE----KQ---VNSVVADVTTEDGQ 73 (280)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-------CCG----GG---EEEEECCTTSHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCC----cc---eEEEEecCCCHHHH
Confidence 455555 5899999999999999999999999987766544321000 000 00 12222233444556
Q ss_pred HHHHHHHhhccCCCCEEEeCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+++++.....+=|++|++...
T Consensus 74 ~~~~~~~~~~~g~iD~lv~nAg~ 96 (280)
T 1xkq_A 74 DQIINSTLKQFGKIDVLVNNAGA 96 (280)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 66676666655555788876543
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.13 Score=48.81 Aligned_cols=83 Identities=13% Similarity=0.233 Sum_probs=54.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~ 83 (505)
+++-|.| .|-+|..+++.|+++|++|.+.+|++++.+++.+.... .. .++.++ =+.+.
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~~~ 63 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ----------------AG---GHAVAVKVDVSDR 63 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTSH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CcEEEEEecCCCH
Confidence 3566776 58999999999999999999999998876655432110 00 222222 23344
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
..++++++++...+.+=|++|+...
T Consensus 64 ~~v~~~~~~~~~~~g~id~lv~nAg 88 (256)
T 1geg_A 64 DQVFAAVEQARKTLGGFDVIVNNAG 88 (256)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4566666666665555577887654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.19 Score=47.20 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=55.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--CCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~~ 84 (505)
++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+..... .. ....++..-+ .+..
T Consensus 16 ~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------------~~-~~~~~~~~d~d~~~~~ 79 (247)
T 3i1j_A 16 VILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA---------------GQ-PQPLIIALNLENATAQ 79 (247)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---------------TS-CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc---------------CC-CCceEEEeccccCCHH
Confidence 355666 499999999999999999999999998877665432110 00 0122333223 3334
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++.+++.+.....+=+++|++...
T Consensus 80 ~~~~~~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 80 QYRELAARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 5666667666655556788876554
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.19 Score=47.09 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
++|-|.|. |-+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45777876 999999999999999999999999887766544
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.23 E-value=0.074 Score=52.05 Aligned_cols=90 Identities=10% Similarity=0.108 Sum_probs=59.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCH-HHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTP-RDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~-~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|+|+ |.+|...+..+...|.+|++.++++++.+.+.+.+.. .....+. +++.+.+.+.|+||- +.. .
T Consensus 127 ~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~-----~~~~~~~~~~~~~~~~~~d~vid-~g~-~ 199 (302)
T 1iz0_A 127 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE-----EAATYAEVPERAKAWGGLDLVLE-VRG-K 199 (302)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS-----EEEEGGGHHHHHHHTTSEEEEEE-CSC-T
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC-----EEEECCcchhHHHHhcCceEEEE-CCH-H
Confidence 46999998 9999999999999999999999999988776654432 1222222 445544445788887 654 2
Q ss_pred hHHHHHHHHhhccCCCCEEEeCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~s 107 (505)
. ++.....+.++-.++..+
T Consensus 200 ~----~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 200 E----VEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp T----HHHHHTTEEEEEEEEEC-
T ss_pred H----HHHHHHhhccCCEEEEEe
Confidence 2 334444454544555544
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.18 Score=48.88 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=55.3
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCC-cEEEEecCCCchH
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRP-RSVIILVKAGSPV 86 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~a-dvIil~vp~~~~v 86 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... +.-.. . ..+..=+.+.+.+
T Consensus 36 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~~Dv~d~~~v 98 (281)
T 4dry_A 36 ALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIG--------------GRTGN---IVRAVVCDVGDPDQV 98 (281)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHHSS---CEEEEECCTTCHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------hcCCC---eEEEEEcCCCCHHHH
Confidence 44555 5899999999999999999999999988766554321 10010 1 1222233444567
Q ss_pred HHHHHHHhhccCCCCEEEeCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+++++++.....+=|++|++...
T Consensus 99 ~~~~~~~~~~~g~iD~lvnnAG~ 121 (281)
T 4dry_A 99 AALFAAVRAEFARLDLLVNNAGS 121 (281)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 77777776666556788887653
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.036 Score=56.49 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=32.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 36899999999999999999999999999999864
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.095 Score=52.93 Aligned_cols=125 Identities=9% Similarity=0.070 Sum_probs=67.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|..|..++.+|+..|. +++++|.+.-....+..+... ....+-.-.....+.+..+ .+++-+...+..
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKR-NSEISVSEIALN 196 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHH-CCCCeEEEeecc
Confidence 3689999999999999999999997 699999875322222211000 0000000011122222221 145555544432
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
-.-+. .+.. +..-++|||++-........+.+.+.+.++.++.+.+.|
T Consensus 197 i~~~~---~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g 244 (353)
T 3h5n_A 197 INDYT---DLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVN 244 (353)
T ss_dssp CCSGG---GGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred cCchh---hhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 11010 1223 567789999875443233344566667788888765543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.16 Score=49.24 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=53.1
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCCc
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAGS 84 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr-~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~~ 84 (505)
+-|.| .|-+|..+|+.|++.|++|.+.++ ++++.+++.+..... . .++.+ .=+.+..
T Consensus 32 ~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~d~~ 92 (280)
T 4da9_A 32 AIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL----------------G---ARVIFLRADLADLS 92 (280)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTSGG
T ss_pred EEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCCHH
Confidence 55556 589999999999999999999985 666655544321100 0 22322 2344555
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++.+.....+=|++|++...
T Consensus 93 ~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 93 SHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp GHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 6777777777665555777776554
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.065 Score=51.60 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=30.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVD 43 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~ 43 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+
T Consensus 18 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~ 54 (266)
T 3p19_A 18 LVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLK 54 (266)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 355556 489999999999999999999999987654
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.35 Score=46.70 Aligned_cols=84 Identities=12% Similarity=0.205 Sum_probs=53.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCCC
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr-~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+| ++++.+.+.+.... ....++.++. +.+.
T Consensus 27 ~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~~~~Dv~d~ 88 (281)
T 3v2h_A 27 TAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAG------------------LSSGTVLHHPADMTKP 88 (281)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHT------------------TCSSCEEEECCCTTCH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhh------------------ccCCcEEEEeCCCCCH
Confidence 355556 589999999999999999999999 55555554432110 0012333322 3344
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++.+++++...+.+=|++|++...
T Consensus 89 ~~v~~~~~~~~~~~g~iD~lv~nAg~ 114 (281)
T 3v2h_A 89 SEIADMMAMVADRFGGADILVNNAGV 114 (281)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 55677777777666566788876554
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.069 Score=55.02 Aligned_cols=174 Identities=11% Similarity=0.083 Sum_probs=103.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCC----------hhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRT----------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V-~v~dr~----------~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
++|.|-|.|++|...|+.|.+.|.+| .+.|.+ .+.+.++.++...-.++..+ .-+.+++... +||+
T Consensus 222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~-~~~~~~i~~~--~~DI 298 (424)
T 3k92_A 222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTD-VITNEELLEK--DCDI 298 (424)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSC-CBCHHHHHHS--CCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcE-EecCccceec--cccE
Confidence 57999999999999999999999996 577877 55555544321100000011 1245666553 4899
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC--CCCChhhhhcCCcccCCCCHH
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG--VSGGEEGARHGPSLMPGGSFE 153 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p--vsgg~~~a~~G~~i~~gg~~e 153 (505)
++-|...+.... +-++.+ .-++|+...|.. .|.+..+.+.++|+.|+.-- -.||.. -.
T Consensus 299 liPcA~~n~I~~----~~a~~l-~ak~V~EgAN~p--~t~eA~~iL~~rGI~~~PD~~aNAGGV~-------------vS 358 (424)
T 3k92_A 299 LVPAAISNQITA----KNAHNI-QASIVVERANGP--TTIDATKILNERGVLLVPDILASAGGVT-------------VS 358 (424)
T ss_dssp EEECSCSSCBCT----TTGGGC-CCSEEECCSSSC--BCHHHHHHHHHTTCEEECHHHHTTHHHH-------------HH
T ss_pred EeecCcccccCh----hhHhhc-CceEEEcCCCCC--CCHHHHHHHHHCCCEEECchHhcCCCEE-------------ee
Confidence 988876543222 223334 567888888875 35667788899999877421 122221 11
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~ 223 (505)
.++.++. .. ...+ -..-|+..++..+...+.+++..+++.+ +++.+...+
T Consensus 359 ~~E~~qn----~~-------~~~w--------~~eeV~~~l~~~m~~~~~~v~~~a~~~~-~~~~~aA~~ 408 (424)
T 3k92_A 359 YFEWVQN----NQ-------GYYW--------SEEEVAEKLRSVMVSSFETIYQTAATHK-VDMRLAAYM 408 (424)
T ss_dssp HHHHHHH----HH-------TCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHH
T ss_pred hhHHHhc----cc-------ccCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHH
Confidence 2222222 12 0111 0234555666666677778888888887 877765554
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.19 Score=50.37 Aligned_cols=124 Identities=11% Similarity=-0.008 Sum_probs=66.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-.|..+|.+|+..|. +++++|.+.-....+..+... ....+..-+....+.+..+ .|++-+..++..
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~i-nP~v~v~~~~~~ 112 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI-FPLMDATGVKLS 112 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHH-CTTCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHh-CCCCEEEEEecc
Confidence 3689999999999999999999997 688998875222111111000 0000000111222222222 155555555421
Q ss_pred ---------ch--HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 84 ---------SP--VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ---------~~--v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
.. ...-.+.+...+..-++|+|++-... +-..+.+.+...++.++.+
T Consensus 113 i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~-tR~lin~~c~~~~~plI~a 170 (340)
T 3rui_A 113 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE-SRWLPSLLSNIENKTVINA 170 (340)
T ss_dssp CCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTG-GGHHHHHHHHHTTCEEEEE
T ss_pred ccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHH-HHHHHHHHHHHcCCcEEEe
Confidence 00 01111233344456689999876553 3334456666778877765
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.097 Score=52.86 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=58.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH-HhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~-~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|+|.|.+|...+..+...|.+|++.++++++.+.+. +.+.. .+.-..+.+.+.+.....|+||-++.....
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~----~v~~~~~~~~~~~~~~~~D~vid~~g~~~~ 264 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD----SFLVSRDQEQMQAAAGTLDGIIDTVSAVHP 264 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS----EEEETTCHHHHHHTTTCEEEEEECCSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc----eEEeccCHHHHHHhhCCCCEEEECCCcHHH
Confidence 4699999999999999999999999999999999887766 33321 111122322222222346888887765433
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++..+ +.+.++-.++..+.
T Consensus 265 ~~~~~----~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 265 LLPLF----GLLKSHGKLILVGA 283 (366)
T ss_dssp SHHHH----HHEEEEEEEEECCC
T ss_pred HHHHH----HHHhcCCEEEEEcc
Confidence 44333 33334444554443
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.16 Score=47.83 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=60.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE-EecCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI-ILVKA 82 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi-l~vp~ 82 (505)
.||.+|+|+ |.||+.++....+.|+++. .+|+..+ . ++ ..+|++| ...|+
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~----------~----------~l-------~~~DVvIDFT~P~ 64 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV----------E----------EL-------DSPDVVIDFSSPE 64 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE----------E----------EC-------SCCSEEEECSCGG
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc----------c----------cc-------cCCCEEEECCCHH
Confidence 378999997 9999999887777899865 5676531 0 11 1389888 44444
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
.+...++... ..|.-+|.++|+......+..+.+.++ +.++-+|
T Consensus 65 --a~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vv~ap 108 (228)
T 1vm6_A 65 --ALPKTVDLCK---KYRAGLVLGTTALKEEHLQMLRELSKE-VPVVQAY 108 (228)
T ss_dssp --GHHHHHHHHH---HHTCEEEECCCSCCHHHHHHHHHHTTT-SEEEECS
T ss_pred --HHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHHHhh-CCEEEec
Confidence 4555544433 356778888888766554455555444 5555444
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.035 Score=57.39 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=31.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
|+.+|.|||.|..|..+|..|+++|++|+++++.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 44679999999999999999999999999999875
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.11 Score=49.78 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=55.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... ...++.++ =+.+..
T Consensus 12 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------------------~~~~~~~~~~Dv~~~~ 73 (262)
T 3pk0_A 12 SVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL------------------GSGKVIGVQTDVSDRA 73 (262)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------------------SSSCEEEEECCTTSHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh------------------CCCcEEEEEcCCCCHH
Confidence 344556 589999999999999999999999998877665432110 00122222 234445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++.+.....+=|++|++...
T Consensus 74 ~v~~~~~~~~~~~g~id~lvnnAg~ 98 (262)
T 3pk0_A 74 QCDALAGRAVEEFGGIDVVCANAGV 98 (262)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666677666655555778776543
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.078 Score=56.55 Aligned_cols=125 Identities=7% Similarity=0.047 Sum_probs=72.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+-... ...+-.-+....+.+..+. +++-+.+.+..
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN-p~v~v~~~~~~- 110 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN-SDVSGSFVEES- 110 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC-TTSBCCEESSC-
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC-CCCeEEEeCCC-
Confidence 589999999999999999999998 7999997764444444321100 0000011122223333321 45545555542
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
+...++.....+..-++||+++- .+..-..+.+.+...++.++.+++.|
T Consensus 111 -~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~ln~~c~~~~iplI~~~~~G 159 (531)
T 1tt5_A 111 -PENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYG 159 (531)
T ss_dssp -HHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred -cchhhhhhHHHhcCCCEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 44433323344555689998854 34444455566667788888775544
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.3 Score=46.91 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=34.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
+|-|.| .|-+|..++..|++.|++|++.+|++++.+++.+
T Consensus 34 ~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 74 (279)
T 1xg5_A 34 LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA 74 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHH
Confidence 466776 5999999999999999999999999887766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 505 | ||||
| d2pgda1 | 297 | a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge | 1e-133 | |
| d1pgja1 | 300 | a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge | 1e-122 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 1e-32 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 2e-31 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 2e-22 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 2e-21 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 2e-13 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 2e-09 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 7e-06 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 4e-05 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.002 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 385 bits (991), Expect = e-133
Identities = 158/300 (52%), Positives = 202/300 (67%), Gaps = 8/300 (2%)
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241
G+G+FVKMVHNGIEYGDMQLI EAY ++K V GL + E+A+ F+EWNK EL+SFL+EITA
Sbjct: 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 60
Query: 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301
I K +D G+ L+ KI D G KGTGKWT A E V I ++ R LS LK+E
Sbjct: 61 SILKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 119
Query: 302 REKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 361
R +A+K QN+ DKK ++D+R+ALYASKI SYAQG LLR + E G
Sbjct: 120 RIQASK------KLKGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFG 173
Query: 362 WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421
W LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D F + Q +WRR +
Sbjct: 174 WTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAI 233
Query: 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWT 480
+ AGI P +LS++D YR A LPANL+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 234 STGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 293
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Score = 356 bits (915), Expect = e-122
Identities = 89/304 (29%), Positives = 155/304 (50%), Gaps = 8/304 (2%)
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW-NKGELESFLVEIT 240
G+G+ VKM HN EY +Q+ E +D+L+ +G L+N E+A + ++W +K L+S++++I+
Sbjct: 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 59
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+ KD+ G L + ++D+ G KGTG W+ Q+A E+ V AP++ ++ R + K
Sbjct: 60 IAAARAKDKDG-SYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKT 118
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ER+ A + + I + ++ + I YAQ LR
Sbjct: 119 ERQANASNAPGI-TQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVH 177
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
+ LN ++ GCI++ L + +A+++NPN+++ + F E+ +R +
Sbjct: 178 NFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISN--LMCAFQTEIRAGLQNYRDM 235
Query: 421 VGL-AISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTE 478
V L +S P + ASL+Y L LV QRD+FG H YER+D+ G +
Sbjct: 236 VALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQ 295
Query: 479 WTKL 482
W +L
Sbjct: 296 WPEL 299
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 120 bits (302), Expect = 1e-32
Identities = 84/177 (47%), Positives = 117/177 (66%), Gaps = 3/177 (1%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ L A+ + G ++
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLE 58
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+ V +++PR +I+LVKAG VD I L + GD IIDGGN Y +T RR + K
Sbjct: 59 EMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDK 118
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGE 180
G+L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+
Sbjct: 119 GILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGD 175
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 117 bits (292), Expect = 2e-31
Identities = 79/176 (44%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDF 66
+G+ GL VMG NLALN+AEKGF ++V+NRT SK +E + A L T F
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
S+++PR +ILV+AG+ D TI L + GD ++D GN + + RR + GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEG 181
+LGMG+SGGEEGAR GP+ PGG+ + IR I++ AA+ DDG PCVT G G
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 91.9 bits (227), Expect = 2e-22
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 8/164 (4%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+I GL MG +A N+ + G+ ++V++ S VD + + RD
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASA-------ARSARDA 54
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V S++ + + L H++PG +++ + + A ++GL
Sbjct: 55 VQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL 114
Query: 127 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQV 169
L VSGG GA G + M GG EA R + + + +
Sbjct: 115 AMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 158
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 89.1 bits (220), Expect = 2e-21
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 14/166 (8%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG+ ++ N+ + G+ + V +R + G T
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN----------PEAIADVIAAGAETASTAK 51
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
++ +I ++ V + + E PG +ID + L + K
Sbjct: 52 AIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK 111
Query: 125 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQV 169
G+ L VSGGE A G S+M GG ++ D+++ +A V
Sbjct: 112 GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 157
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 65.7 bits (159), Expect = 2e-13
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 13/167 (7%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++ GL MG +A ++A + FP V+NRT K + G + V
Sbjct: 2 KVAFIGLGAMGYPMAGHLA-RRFPTLVWNRTFEKALRHQEEF---GSEAVPLERVAEARV 57
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ P + + + AL ++ G +D + + R +KG+
Sbjct: 58 IFTCLPTTREV--------YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 109
Query: 128 YLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGP 173
YL VSGG GA G ++M GG EA +R L V GP
Sbjct: 110 YLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHVGP 156
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 53.7 bits (128), Expect = 2e-09
Identities = 21/173 (12%), Positives = 43/173 (24%), Gaps = 24/173 (13%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
R+G G + Q LA + +G + S R + Y+ +
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
++ ++ +AG +D N T R +
Sbjct: 62 SAVTPGVALGAARRAG-------------RHVRGIYVDINNISP-ETVRMASSL-IEKGG 106
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
++ + G ++ G L + G + G
Sbjct: 107 FVDAAIMGSVRRKGADIRIIASGRDAEE---FMKLNRY------GLNIEVRGR 150
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 44.0 bits (102), Expect = 7e-06
Identities = 19/170 (11%), Positives = 53/170 (31%), Gaps = 17/170 (10%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ GL ++G +LA ++ +G + +R S ++ ++R +
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL---------VDEAGQDL 52
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+Q + + + + + + + + G
Sbjct: 53 SLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGH 112
Query: 128 YLGMGVSGGEEGARHGP--------SLMPGGSFEAYNNIRDILQKVAAQV 169
+ + G +GA + E +R +L+ + ++
Sbjct: 113 PMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKI 162
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 41.9 bits (97), Expect = 4e-05
Identities = 11/162 (6%), Positives = 38/162 (23%), Gaps = 18/162 (11%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
+ G + + + ++ + +R+ + + Y + L
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE------------VYGGKAATL 49
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
+ ++ V +T+A G + +
Sbjct: 50 EKHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIH-----P 104
Query: 129 LGMGVSGGEEGARH-GPSLMPGGSFEAYNNIRDILQKVAAQV 169
S + G ++ I ++++ +
Sbjct: 105 NFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 146
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 36.8 bits (84), Expect = 0.002
Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 9/145 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-----REGQLPLTGHYT 62
+ GL G A +A KG + ++ ++ E DR
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 63 PRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIID--GGNEWYLNTERRIHE 120
D L+++ ++I+V A A ++ ++S G II G L + + E
Sbjct: 63 TSDIGLAVKDADVILIVVPAIH-HASIAANIASYISEGQLIILNPGATGGALEFRKILRE 121
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPS 145
+ +G S P
Sbjct: 122 NGAPEVT-IGETSSMLFTCRSERPG 145
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 505 | |||
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 100.0 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 100.0 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.97 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.97 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.96 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.94 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 99.85 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 99.85 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.85 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.82 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.73 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.73 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.7 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.59 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.55 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.54 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.49 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.48 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.42 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.4 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.4 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.39 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.38 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.36 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.32 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.22 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.11 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.85 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.81 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.8 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.75 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.73 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.72 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.65 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.64 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.6 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.59 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.53 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.53 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.5 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.3 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.29 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.29 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.27 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.22 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.18 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.17 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.11 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.08 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.01 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.98 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.97 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.95 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.95 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.95 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.93 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.89 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.88 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.85 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.83 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.82 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.79 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.78 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.74 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.72 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.68 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.65 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.61 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.58 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.57 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.5 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.5 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.5 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.5 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.49 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.46 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.45 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.36 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.35 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.27 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.24 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.23 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.22 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.19 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.18 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.18 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.18 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.14 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.13 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.07 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.05 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.03 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.01 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 97.01 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 96.97 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.94 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.93 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.9 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 96.86 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.84 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.84 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.83 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.83 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.83 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.79 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.79 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.75 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.74 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.67 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.66 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.57 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.49 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.45 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.43 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 96.33 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.29 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.28 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 96.28 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.16 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.09 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.03 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.02 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.98 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.97 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.95 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.93 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.92 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.92 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.9 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.89 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.88 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.85 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.83 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.83 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.78 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.7 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.68 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.6 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.58 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.57 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.55 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.5 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.46 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.46 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.41 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 95.4 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.39 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 95.39 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.37 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.36 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.36 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.32 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.31 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.3 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.27 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.25 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 95.2 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.16 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.15 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.09 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.08 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.08 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.97 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.96 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.95 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.93 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.91 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 94.9 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 94.87 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.84 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.84 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.83 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.8 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.79 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.79 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.75 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.75 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.74 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.71 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.68 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 94.67 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.65 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.64 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.58 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.56 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.43 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.39 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.38 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.31 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.3 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 94.29 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 94.25 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 94.23 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.19 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 94.16 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.13 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.06 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.05 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.98 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 93.95 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.94 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.93 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.93 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.9 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 93.87 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.84 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 93.8 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 93.8 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 93.8 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.75 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.73 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.63 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 93.56 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.53 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.52 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 93.5 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 93.49 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.44 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.44 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.41 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.36 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.36 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 93.29 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.2 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.19 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 93.18 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.18 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.15 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.04 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.97 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 92.93 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.89 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 92.71 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 92.61 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.6 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.58 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.43 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.32 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 92.28 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 92.28 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 92.25 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 92.22 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 92.12 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.02 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.01 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.01 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.72 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 91.64 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 91.38 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.22 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 91.13 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 91.09 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 91.03 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 90.96 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.91 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.91 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.72 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 90.65 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 90.55 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 90.14 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 89.85 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 89.78 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.77 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 89.75 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 89.68 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 89.45 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 89.34 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 89.29 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 89.26 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 89.09 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 89.09 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 88.86 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.68 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.38 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 88.35 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 88.34 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 88.09 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 88.06 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 87.89 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 87.8 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 87.48 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 87.29 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 87.18 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 87.13 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 86.49 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 86.38 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.16 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 86.12 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 85.7 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 85.57 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 85.48 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 85.44 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 85.4 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 85.28 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 84.74 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 84.64 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 84.49 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 84.34 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 84.28 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 84.01 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 83.9 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 83.67 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 83.56 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 83.18 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 83.13 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 82.96 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 82.93 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 82.85 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 82.79 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 82.73 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 82.63 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 82.6 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 82.6 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 82.5 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 82.48 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 82.38 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 82.12 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 82.03 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 81.85 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 81.81 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 81.8 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 81.73 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 81.72 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 81.56 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 81.41 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 81.12 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 80.98 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 80.67 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 80.27 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 80.21 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 80.01 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=100.00 E-value=2.5e-84 Score=640.50 Aligned_cols=295 Identities=53% Similarity=0.898 Sum_probs=279.3
Q ss_pred CchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHh
Q 010652 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILD 261 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~ 261 (505)
|+|||||||||+|||++||+++|+|.++++..|++++++.++|..|+++.++|||++++.++++.+++ .+.+.+|.|.|
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~-~~~~~ld~I~d 79 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDA-DGKHLLPKIRD 79 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCT-TSSBSGGGSCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC-CcCcchhhhhc
Confidence 79999999999999999999999999999864599999999999999999999999999999987664 35589999999
Q ss_pred hhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccchhhHHHHHHHHHHHH
Q 010652 262 KTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYAS 341 (505)
Q Consensus 262 ~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ai~~~ 341 (505)
.++|||||+|++++|.++|||+|+|.+||++|++|+.+++|..+++.++++... ....+...|+++||||+|++
T Consensus 80 ~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~~~~~~~~~~~~~------~~~~~~~~~i~~l~~al~~~ 153 (297)
T d2pgda1 80 SAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI------PFEGDKKSFLEDIRKALYAS 153 (297)
T ss_dssp CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC------CCCSCHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHHHhhhcccCcccC------CCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876432 23446788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhHhHHHHhhhhHHHHHH
Q 010652 342 KICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421 (505)
Q Consensus 342 ~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v 421 (505)
+|++|+|||+||++++++|+|++|+.+|+++||+||||||.||+.+.++|+++|++.|+++++.|.+.+.+..++|||+|
T Consensus 154 ~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~~~~~l~~~~~~~r~~v 233 (297)
T d2pgda1 154 KIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAI 233 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHHHHHHHhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCcc-cccccCCC
Q 010652 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWTKLP 483 (505)
Q Consensus 422 ~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~-h~~w~~~~ 483 (505)
..|++.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.| |++|+..+
T Consensus 234 ~~ai~~gip~P~lssaL~y~~~~~~~~lp~~lIQAqRD~FG~H~~~r~d~~G~f~H~~W~~~~ 296 (297)
T d2pgda1 234 STGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHG 296 (297)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSC
T ss_pred HHHHHcCCChHHHHHHHHHHHHhccCCchhHHHHHHHHHhcCCCeeecCCCCCcccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999975 99998643
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=7.7e-82 Score=624.94 Aligned_cols=295 Identities=29% Similarity=0.546 Sum_probs=266.6
Q ss_pred CchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcc-CCcchhhHhhhhhhcccccccCCchhHHHHH
Q 010652 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNK-GELESFLVEITADIFKVKDEYGEGELVDKIL 260 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~-g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~ 260 (505)
|+|||||||||+|||++||+++|+|.+++..+ ++++++.++|+.|+. +.++|||++++.++++++++ .+.+++|.|+
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~-~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~-~g~~l~d~I~ 78 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDK-DGSYLTEHVM 78 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCT-TSSBGGGGBC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCC-CCchhHHHhc
Confidence 79999999999999999999999999999876 999999999999965 57899999999999987664 4669999999
Q ss_pred hhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccchhhHHHHHHHHHHH
Q 010652 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYA 340 (505)
Q Consensus 261 ~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ai~~ 340 (505)
|.++|||||+|++++|.++|+|+|++.+||.+|++|+.|++|..+++.++++...... ........++|+++|||||||
T Consensus 79 d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~Al~~ 157 (300)
T d1pgja1 79 DRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSPGY-TLKNKSPSGPEIKQLYDSVCI 157 (300)
T ss_dssp CCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCCCC-CCSCCSTTSHHHHHHHHHHHH
T ss_pred ccccCCchHHHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHHHHHhhcccccCCccc-ccccchhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999866431100 001123567899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhHhHHHHhhhhHHHHH
Q 010652 341 SKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420 (505)
Q Consensus 341 ~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~ 420 (505)
|+|++|+|||+||++++++|+|++|+.+|+++||+||||||.||+.|.++|+++|++.|++. .|...+.+....||++
T Consensus 158 ~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~a~~~~~~l~~l~~--~f~~~~~~~~~~~~r~ 235 (300)
T d1pgja1 158 AIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDM 235 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTTG--GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHHHhhcCCccchhhH--HHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888775 3777777777777666
Q ss_pred HH-HHHHcCCChHHHHHHHHHHHhhccCChh-hhHHHHHhhhhcCccccccCCCCcccccccC
Q 010652 421 VG-LAISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 421 v~-~a~~~gvp~P~~saal~y~~~~~~~~~~-a~liqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
|. .+++.|+|+|++++||+||++++++++| +|||||||||||+|||+|+|++|.||++|++
T Consensus 236 v~~~~~~~gip~P~lssaL~y~~~~~~~~l~~anLIQAqRD~FGaH~~~r~d~~g~~H~~W~~ 298 (300)
T d1pgja1 236 VALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPE 298 (300)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSSEECCCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCCchhHHHHHHHhhcCCCCeeeCCCCCCcCCCCCC
Confidence 54 5788899999999999999999999999 6999999999999999999999999999986
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.97 E-value=2.1e-31 Score=245.04 Aligned_cols=173 Identities=47% Similarity=0.804 Sum_probs=158.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+.+|||||+|.||.+||++|+++||+|++|||++++++++.+.+.... ......+.+++++.+..+|.+++++|++.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~ 79 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT--KVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS--SCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccc--cccchhhhhhhhhhhcccceEEEecCchHH
Confidence 358999999999999999999999999999999999999988754321 345677888888877779999999999999
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~i 165 (505)
+.++.+++.+.+.+|++|||+||..|.+++++.+.+.++|++|+++|++||+.+|+.|.++|+||+++++++++|+|+.+
T Consensus 80 v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG~~~~~~~~~~il~~~ 159 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (176)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc-CCCCcEEEeCC
Q 010652 166 AAQV-DDGPCVTYIGE 180 (505)
Q Consensus 166 ga~~-~~~~~v~~~G~ 180 (505)
+.|+ .+++|+.|+|+
T Consensus 160 ~~kv~~g~~c~~~~G~ 175 (176)
T d2pgda2 160 AAKVGTGEPCCDWVGD 175 (176)
T ss_dssp SCBCTTSCBSCCCCEE
T ss_pred hcccCCCCcCceeeCC
Confidence 9997 57799999987
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.7e-31 Score=242.21 Aligned_cols=157 Identities=23% Similarity=0.390 Sum_probs=148.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ...+.+++|+++. +|+||+|||++.++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~d~ii~~v~~~~~v 70 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSPHV 70 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhh-------hhhcccHHHHHhC---CCeEEEEcCCHHHH
Confidence 6899999999999999999999999999999999999988764 4678999999998 99999999999999
Q ss_pred HHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
++++ +.+.+.+.+|++|||+||+.|.+++++.+.++++|++|+++|++|++.+++.|+ ++|+||+++++++++|+|
T Consensus 71 ~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il 150 (161)
T d1vpda2 71 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLM 150 (161)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 9998 568889999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHhhcccCCCCcEEEeC
Q 010652 163 QKVAAQVDDGPCVTYIG 179 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G 179 (505)
+.++ +.++|+|
T Consensus 151 ~~~~------~~i~~~G 161 (161)
T d1vpda2 151 KAMA------GSVVHTG 161 (161)
T ss_dssp HTTE------EEEEEEE
T ss_pred HHhc------CceEECC
Confidence 9999 7789986
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=3e-30 Score=234.08 Aligned_cols=158 Identities=26% Similarity=0.423 Sum_probs=147.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+||||||+|.||.+||++|+++||+|.+|||++++.+.+.+.+ ...+.++.|++.. +|+|++|||++.+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~diii~~v~~~~~ 70 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 70 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTS---CSEEEECCSCHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhh-------ccccchhhhhccc---cCeeeecccchhh
Confidence 35899999999999999999999999999999999999888764 4667899999987 9999999999988
Q ss_pred HHHHHH---HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 86 VDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~---~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
++.++. ++.+.+.+|++|||+||+.|.++.++.+.++++|++|+++||+||+++++.|+ ++|+||+++++++++++
T Consensus 71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~i 150 (162)
T d3cuma2 71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 150 (162)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHH
Confidence 888874 47888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhhcccCCCCcEEEeC
Q 010652 162 LQKVAAQVDDGPCVTYIG 179 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G 179 (505)
|+.++ +.++|+|
T Consensus 151 l~~~~------~~v~~~G 162 (162)
T d3cuma2 151 FEAMG------RNIFHAG 162 (162)
T ss_dssp HHHHE------EEEEEEE
T ss_pred HHHHc------CccEECc
Confidence 99999 7789986
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.96 E-value=1.3e-28 Score=226.40 Aligned_cols=176 Identities=42% Similarity=0.724 Sum_probs=156.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-CCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-LPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~-~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|||||||+|.||.+||++|+++||+|.+|||++++.+++.+.+..... .......+.++++..+..++.+++++++...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 689999999999999999999999999999999999999887643210 0356677888888888889999999999999
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~i 165 (505)
++.++..+.+.+.++++++|+||..|.+++++.+.+.+++++|+++|++|++.+++.|+++|+||+++++++++|+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG~~~~~~~v~pil~~~ 161 (178)
T d1pgja2 82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161 (178)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEeCCCCch
Q 010652 166 AAQVDDGPCVTYIGEGGSG 184 (505)
Q Consensus 166 ga~~~~~~~v~~~G~~G~g 184 (505)
+.++.. .-.|+|+.|+|
T Consensus 162 ~~~~~~--~~~~~g~~G~G 178 (178)
T d1pgja2 162 AAKADD--GRPCVTMNGSG 178 (178)
T ss_dssp SCBCTT--SCBSCCCCCST
T ss_pred hccccC--CCCccCCCCCC
Confidence 965421 11278888876
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=3.6e-27 Score=212.24 Aligned_cols=154 Identities=26% Similarity=0.332 Sum_probs=137.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
||||||+|.||.+||+||.++|+.| +|||++++..++.+.+. ......+ .+.+ +|++++++|++.++.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~---~~~~i~~~~~~~~v~ 69 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG-------SEAVPLE-RVAE---ARVIFTCLPTTREVY 69 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHC-------CEECCGG-GGGG---CSEEEECCSSHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcC-------Ccccccc-cccc---eeEEEecccchhhhh
Confidence 7999999999999999999999865 78999998888776543 2233443 3444 899999999999999
Q ss_pred HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHhh
Q 010652 88 QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~~ig 166 (505)
.+.+.+.+.+.++.++||+||+.|.+++++.+.++++|++|+|+||+||+.+|+.|+ ++|+||+++++++++|+|. ++
T Consensus 70 ~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L~-~~ 148 (156)
T d2cvza2 70 EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YA 148 (156)
T ss_dssp HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCT-TE
T ss_pred hhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHHH-hc
Confidence 888999999999999999999999999999999999999999999999999999999 9999999999999999994 88
Q ss_pred cccCCCCcEEEeCC
Q 010652 167 AQVDDGPCVTYIGE 180 (505)
Q Consensus 167 a~~~~~~~v~~~G~ 180 (505)
++++|+||
T Consensus 149 ------~~v~~~GP 156 (156)
T d2cvza2 149 ------KKVVHVGP 156 (156)
T ss_dssp ------EEEEEEES
T ss_pred ------CcCEEeCc
Confidence 78999987
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.85 E-value=1.4e-22 Score=198.42 Aligned_cols=119 Identities=5% Similarity=0.069 Sum_probs=100.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
|+||||||||||||||+||+|+|+|++|+.+.+.++ .++.+|+.-|+.| .++|+||+++.++++++++..+.++|.+
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~--~~i~~vf~~w~~~-~l~syLleit~~il~~kd~~~~~~ld~I 77 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGH--KEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHLLPKI 77 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH--HHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBSGGGS
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHhCC-CccHHHHHHHHHHHhccCCCcCcchhhh
Confidence 579999999999999999999999999997643222 4566666669999 8999999999999986544456777888
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~ 449 (505)
.+.+-++++| +|++++|+++|+|+|+|++||+ |+++++.+|.
T Consensus 78 ~d~a~~kGTG--~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~ 121 (297)
T d2pgda1 78 RDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 121 (297)
T ss_dssp CCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred hccccCCCch--HHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHH
Confidence 8888889999 9999999999999999999999 6777666554
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.85 E-value=2.1e-22 Score=197.72 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=100.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN-LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~-l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
|+||||||||||||||+||.++|+|++|+.. +++ .++.+|++.|++|.+++||||++..++++++++....|+|.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~----~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~ 76 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAM----GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEH 76 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGG
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHH
Confidence 5899999999999999999999999999843 222 25677777797766999999999999998765445678888
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~ 449 (505)
+.+.+-++++| +|++++|+++|+|+|+|++||. ++++++..|.
T Consensus 77 I~d~a~~kGTG--~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~ 121 (300)
T d1pgja1 77 VMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQ 121 (300)
T ss_dssp BCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHH
T ss_pred hcccccCCchH--HHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHH
Confidence 88888889999 9999999999999999999999 7888877664
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.85 E-value=2.1e-21 Score=173.35 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=122.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||||||+|.||.+||++|+++||+|++||+++++...+...+. ....+++|+++. +|+||+|||++ ..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~~~---~diIi~~v~~~-~~ 69 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV-------GVTETSEEDVYS---CPVVISAVTPG-VA 69 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-------TCEECCHHHHHT---SSEEEECSCGG-GH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcc-------cccccHHHHHhh---cCeEEEEecCc-hH
Confidence 68999999999999999999999999999999887776665543 345788999988 99999999996 45
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~~i 165 (505)
.+++..+.+.+ ++++||+||..|..++++.+.+++. .|+++|++|++..+..++ .++.|++.+.+++ |+.+
T Consensus 70 ~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~ 141 (152)
T d1i36a2 70 LGAARRAGRHV--RGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRY 141 (152)
T ss_dssp HHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGG
T ss_pred HHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHc
Confidence 66777777654 6899999999999999998877654 599999999999998888 5555556555543 6777
Q ss_pred hcccCCCCcEEEeCC
Q 010652 166 AAQVDDGPCVTYIGE 180 (505)
Q Consensus 166 ga~~~~~~~v~~~G~ 180 (505)
+ .++.++|+
T Consensus 142 g------~~i~~~G~ 150 (152)
T d1i36a2 142 G------LNIEVRGR 150 (152)
T ss_dssp T------CEEEECSS
T ss_pred C------CeeeEcCC
Confidence 8 78888886
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.82 E-value=6.6e-20 Score=165.47 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=117.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||||||+|.||++||++|.++||+|++|||+++.++++.+.+... ... +..+.++. +|+||+++|.. .+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~-----~~~-~~~~~~~~---~DiIilavp~~-~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVD-----EAG-QDLSLLQT---AKIIFLCTPIQ-LI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCS-----EEE-SCGGGGTT---CSEEEECSCHH-HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccc-----eee-eecccccc---cccccccCcHh-hh
Confidence 6899999999999999999999999999999999988877654321 233 33344554 99999999985 79
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc-CCeEEcCCCCCChhhhhc----CC-cc---cCCCCHHHHHH
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMGVSGGEEGARH----GP-SL---MPGGSFEAYNN 157 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~-gi~~v~~pvsgg~~~a~~----G~-~i---~~gg~~e~~~~ 157 (505)
+++++++.+.+.++.+|+|+++..........+..... +.|.+..|..+|+..+.. +. .+ +.++++++++.
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~ 150 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLAC 150 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHH
Confidence 99999999999999999999998766555444432211 345555555555554432 33 23 34789999999
Q ss_pred HHHHHHHhhcccCCCCcEEEe
Q 010652 158 IRDILQKVAAQVDDGPCVTYI 178 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~ 178 (505)
++++|+.+| ..+++|
T Consensus 151 v~~l~~~lG------~~v~~c 165 (165)
T d2f1ka2 151 LRSVLEPLG------VKIYLC 165 (165)
T ss_dssp HHHHHGGGT------CEEEEC
T ss_pred HHHHHHHhC------CEEEeC
Confidence 999999999 556653
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.73 E-value=6.6e-18 Score=150.11 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=113.9
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++||+||| +|.||.+||++|.++||+|++|||++.... ++.++. +|.+++++|..
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~--------------------~~~~~~---~~~v~~~~~~~ 64 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA--------------------ESILAN---ADVVIVSVPIN 64 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH--------------------HHHHTT---CSEEEECSCGG
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc--------------------chhhhh---ccccccccchh
Confidence 356999999 999999999999999999999999865322 233444 89999999985
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC--cccCCCCHHHHHHHHH
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP--SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~--~i~~gg~~e~~~~v~~ 160 (505)
++..++.++.+.+.++.+|+|++|+.+...+++.+.+ ..+|++ .|++|++.+...|. .+++|++++.++++.+
T Consensus 65 -~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ 140 (152)
T d2pv7a2 65 -LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLE 140 (152)
T ss_dssp -GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHH
T ss_pred -hheeeeecccccccCCceEEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHH
Confidence 7888999999999999999999999988776665533 345765 69999988888887 4556889999999999
Q ss_pred HHHHhhcc
Q 010652 161 ILQKVAAQ 168 (505)
Q Consensus 161 ll~~iga~ 168 (505)
+|+.+|++
T Consensus 141 ll~~~Ga~ 148 (152)
T d2pv7a2 141 QIQIWGAK 148 (152)
T ss_dssp HHHHTTCE
T ss_pred HHHHhCCE
Confidence 99999953
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=1.8e-19 Score=160.40 Aligned_cols=149 Identities=7% Similarity=-0.037 Sum_probs=112.1
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHH
Q 010652 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQ 88 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~ 88 (505)
|||||+|+||++|+.+|.++++.+.+|||++++.+++.+.+. ..+.+++++++. +|+||+|||++ ++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~-------~~~~~~~~~~~~---~DiVil~v~d~-~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYG-------GKAATLEKHPEL---NGVVFVIVPDR-YIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTC-------CCCCSSCCCCC------CEEECSCTT-THHH
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccc-------ccccchhhhhcc---CcEEEEeccch-hhhH
Confidence 899999999999999998766666799999999999988753 235577777776 99999999985 6777
Q ss_pred HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHhhc
Q 010652 89 TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAA 167 (505)
Q Consensus 89 vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~~iga 167 (505)
+++++. .++.+|||+|+..+.+..+ .....+++++.++..++...+..+. .++++||+++++.++++++.+|
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG- 143 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFK---KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEIS- 143 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGC---SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHC-
T ss_pred HHhhhc---ccceeeeecccchhhhhhh---hhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHC-
Confidence 665542 4789999999988765432 2233467888888877777766655 7888999999999999999999
Q ss_pred ccCCCCcEEEeCC
Q 010652 168 QVDDGPCVTYIGE 180 (505)
Q Consensus 168 ~~~~~~~v~~~G~ 180 (505)
.+++++++
T Consensus 144 -----~~~~~i~~ 151 (153)
T d2i76a2 144 -----GKYFVIPS 151 (153)
T ss_dssp -----SCEEECCG
T ss_pred -----CcEEEeCC
Confidence 67888764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.70 E-value=3e-16 Score=141.73 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=115.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+|||+|.||.+||++|.++|+ +|++||++++..+.+.+.+... ....+..+.... .+|+|++|+|. .
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~--~~dlIila~p~-~ 73 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID-----EGTTSIAKVEDF--SPDFVMLSSPV-R 73 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS-----EEESCGGGGGGT--CCSEEEECSCH-H
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch-----hhhhhhhhhhcc--ccccccccCCc-h
Confidence 479999999999999999999996 6889999999988888765321 344555544331 38999999998 5
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCC----hhhhh----cCC-ccc-C--CCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGG----EEGAR----HGP-SLM-P--GGS 151 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg----~~~a~----~G~-~i~-~--gg~ 151 (505)
.+.++++++.+.+.++.+|+|.+++.........+.+.. +|+. .|+.|. ++.+. .|. .++ + +.+
T Consensus 74 ~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~ 150 (171)
T d2g5ca2 74 TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD 150 (171)
T ss_dssp HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred hhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCCC
Confidence 788999999999999999999999988777777766554 3655 476664 33332 233 222 2 358
Q ss_pred HHHHHHHHHHHHHhhc
Q 010652 152 FEAYNNIRDILQKVAA 167 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga 167 (505)
++.++.++++++.+|+
T Consensus 151 ~~~~~~v~~~~~~lG~ 166 (171)
T d2g5ca2 151 KKRLKLVKRVWEDVGG 166 (171)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8999999999999994
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.59 E-value=4.8e-15 Score=131.48 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=105.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||||||+|.||.+|+.+|.++|++|.+|+|++++.+++.++. ++..+.+++++++. +|+||+||++ +.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---~dvIilavkp-~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-QLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-GGH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc------ceeeechhhhhhhc---cceeeeecch-HhH
Confidence 6899999999999999999999999999999999998887653 35677899999997 9999999986 456
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCCc-ccCC--CCHHHHHHHHHHH
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~~-i~~g--g~~e~~~~v~~ll 162 (505)
+++ ++.+.++++||+..++. +...+.+.+.. +..++. +|-.+ .....|.+ +..+ .+++..+.++++|
T Consensus 71 ~~v----l~~l~~~~~iis~~agi--~~~~l~~~l~~-~~~ivr~mPN~~--~~v~~g~~~~~~~~~~~~~~~~~v~~l~ 141 (152)
T d2ahra2 71 ETV----LKPLHFKQPIISMAAGI--SLQRLATFVGQ-DLPLLRIMPNMN--AQILQSSTALTGNALVSQELQARVRDLT 141 (152)
T ss_dssp HHH----HTTSCCCSCEEECCTTC--CHHHHHHHHCT-TSCEEEEECCGG--GGGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHH----hhhcccceeEecccccc--cHHHHHhhhcc-cccchhhccchh--hhcCccceEEEeCCCCCHHHHHHHHHHH
Confidence 555 45677889999887764 33445555533 344543 34221 12223443 3333 2689999999999
Q ss_pred HHhh
Q 010652 163 QKVA 166 (505)
Q Consensus 163 ~~ig 166 (505)
+.+|
T Consensus 142 ~~~G 145 (152)
T d2ahra2 142 DSFG 145 (152)
T ss_dssp HTTE
T ss_pred HhCC
Confidence 9999
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.55 E-value=5.1e-14 Score=130.63 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=115.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc---------------ccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH---------------REGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~---------------~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+... .. .++..+++.+++++.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~--~~~~~~~~~~~~i~~-- 76 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQT--GRLSGTTDFKKAVLD-- 76 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT--TCEEEESCHHHHHHT--
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcc--cccccCCCHHHHHhh--
Confidence 68999999999999999999999999999999999887653211 11 156788899999887
Q ss_pred CCcEEEEecCCCc---------hHHHHHHHHh---hccCCCCEEEeCCCCChhhHHHHHHHHHH--------cCCeEEcC
Q 010652 72 RPRSVIILVKAGS---------PVDQTIAALS---EHMSPGDCIIDGGNEWYLNTERRIHEASQ--------KGLLYLGM 131 (505)
Q Consensus 72 ~advIil~vp~~~---------~v~~vl~~l~---~~l~~g~iiId~st~~~~~t~~~~~~l~~--------~gi~~v~~ 131 (505)
+|++++|||++. .+..+++.+. ....++++||..||+.|.+++++...+.+ ..+++.-+
T Consensus 77 -~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (202)
T d1mv8a2 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (202)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhh
Confidence 999999999852 3455555444 45668899999999999999987765432 13455666
Q ss_pred CCCC--Ch--hhhhcCCcccCCC-CHHHHHHHHHHHHHhh
Q 010652 132 GVSG--GE--EGARHGPSLMPGG-SFEAYNNIRDILQKVA 166 (505)
Q Consensus 132 pvsg--g~--~~a~~G~~i~~gg-~~e~~~~v~~ll~~ig 166 (505)
|-.- |. .....-+.+++|| ++++.+.++.+++.+.
T Consensus 156 PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~ 195 (202)
T d1mv8a2 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELD 195 (202)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSS
T ss_pred hhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence 6322 21 2223334566676 6788999999998887
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.54 E-value=2.7e-15 Score=142.11 Aligned_cols=162 Identities=13% Similarity=0.034 Sum_probs=130.0
Q ss_pred CcEEEEcccH--HHHHHHH------HHHhCCCcEEEEeCChhHH-HHHHHhh---------------cccC---------
Q 010652 7 SRIGLAGLAV--MGQNLAL------NVAEKGFPISVYNRTTSKV-DETLDRA---------------HREG--------- 53 (505)
Q Consensus 7 ~~IgiIGlG~--mG~~lA~------~La~~G~~V~v~dr~~~~~-~~~~~~~---------------~~~g--------- 53 (505)
.+++++|.|. ||..++. +|++.|+.|++.|.+++++ +.+.+.. ....
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 3577888886 8888877 7899999999999998764 3222110 0000
Q ss_pred -----CCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 54 -----QLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 54 -----~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+.+++.++|+.|++++ +|+||+|||.++.+.++++++.+.+++|.+|+|+||+.+..+.++.+.+.+++++|
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~---ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v 197 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI 197 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred cCCHHHCCCEEECCHHHHHhc---CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence 0147788999999998 99999999999889999999999999999999999999999999999999999999
Q ss_pred EcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEe
Q 010652 129 LGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYI 178 (505)
Q Consensus 129 v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~ 178 (505)
++++..++++. ..+. .++.+++++.++++.++|+.+| +.++.+
T Consensus 198 i~~hp~a~pe~-~g~~li~~~~aseE~iekv~elles~G------k~~~vv 241 (242)
T d2b0ja2 198 TSYHPGCVPEM-KGQVYIAEGYASEEAVNKLYEIGKIAR------GKAFKM 241 (242)
T ss_dssp EECBCSSCTTT-CCCEEEEESSSCHHHHHHHHHHHHHHH------SCEEEE
T ss_pred ECCCccCcCcc-ccceEEecCCCCHHHHHHHHHHHHHHC------CCeEeC
Confidence 98876666542 2223 6677899999999999999999 556544
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.49 E-value=2.5e-14 Score=126.71 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=100.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|||||||+|.||.+|+.+|.++| ++|.+|||++++.+++.++. ++...++.+++ .+ +|+||++|++ ..
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~------~~~~~~~~~~v-~~---~Div~lavkP-~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPEL-HS---DDVLILAVKP-QD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCC-CT---TSEEEECSCH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc------ccccccccccc-cc---cceEEEecCH-HH
Confidence 68999999999999999998887 99999999999999887753 35667776664 33 9999999986 56
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-cccCC--CCHHHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~~g--g~~e~~~~v~~l 161 (505)
+.++++++. ..+.++|+..++.+ ...+.+.+.. ..+++. +|-. +.....|. .+..+ .+++..+.++++
T Consensus 70 ~~~v~~~l~---~~~~~viS~~ag~~--~~~l~~~l~~-~~~iir~mpn~--p~~~~~g~t~~~~~~~~~~~~~~~v~~l 141 (152)
T d1yqga2 70 MEAACKNIR---TNGALVLSVAAGLS--VGTLSRYLGG-TRRIVRVMPNT--PGKIGLGVSGMYAEAEVSETDRRIADRI 141 (152)
T ss_dssp HHHHHTTCC---CTTCEEEECCTTCC--HHHHHHHTTS-CCCEEEEECCG--GGGGTCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhHHHHh---hcccEEeecccCCC--HHHHHHHhCc-CcceEeecccc--hhHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 777765553 35788988777654 3344554432 223333 2322 22334555 34443 368889999999
Q ss_pred HHHhh
Q 010652 162 LQKVA 166 (505)
Q Consensus 162 l~~ig 166 (505)
|+.+|
T Consensus 142 ~~~~G 146 (152)
T d1yqga2 142 MKSVG 146 (152)
T ss_dssp HHTTE
T ss_pred HHhCC
Confidence 99999
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.7e-13 Score=126.05 Aligned_cols=158 Identities=10% Similarity=0.137 Sum_probs=111.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCC---------------CCeeeeCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ---------------LPLTGHYT 62 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~---------------~~i~~~~s 62 (505)
+..||+|||+|.||.++|..++.+||+|.+||++++.+++..+.. ...+. .++..+.+
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 457999999999999999999999999999999998655443210 00000 04667788
Q ss_pred HHHHHhhcCCCcEEEEecCCCchHHH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--Hc--CCeEEcCCC-CCC
Q 010652 63 PRDFVLSIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGV-SGG 136 (505)
Q Consensus 63 ~~e~v~~l~~advIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~--gi~~v~~pv-sgg 136 (505)
..+.+.+ +|+|+.++|....++. ++.++.+.++++.++...|++.+. .+++..+. ++ |.||+..|- ..-
T Consensus 83 ~~~a~~~---ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~ig~HffnP~~~~~l 157 (192)
T d1f0ya2 83 AASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQI--TSIANATTRQDRFAGLHFFNPVPVMKL 157 (192)
T ss_dssp HHHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCH--HHHHTTSSCGGGEEEEEECSSTTTCCE
T ss_pred hHhhhcc---cceehhhcccchhHHHHHHHHHhhhcccCceeeccCccccc--chhhhhccCHhHEEeeccccccCcccE
Confidence 8887776 9999999999987765 458888888888777766655543 23443332 22 667775441 111
Q ss_pred hhhhhcCCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCC
Q 010652 137 EEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180 (505)
Q Consensus 137 ~~~a~~G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~ 180 (505)
. -+++| .++++++.+..+++.+| +.++.+.+
T Consensus 158 V-------EIv~g~~T~~~~i~~~~~~~~~lg------k~pV~v~D 190 (192)
T d1f0ya2 158 V-------EVIKTPMTSQKTFESLVDFSKALG------KHPVSCKD 190 (192)
T ss_dssp E-------EEECCTTCCHHHHHHHHHHHHHTT------CEEEEECS
T ss_pred E-------EEcCCCCCCHHHHHHHHHHHHHcC------CEEEEeec
Confidence 1 23444 58899999999999999 77777743
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.42 E-value=3.1e-13 Score=116.85 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=93.4
Q ss_pred CCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHH
Q 010652 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKI 259 (505)
Q Consensus 180 ~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i 259 (505)
+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+.+.|+.++.+.+.+.. ++|.++|.++.+
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-id~~~~~~~l---~~~~~~S~~~~~~~~~~~~-~~~~~~f~~~l~ 75 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKAPMVMD-RNFKPGFRIDLH 75 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHHHHHHHT-TCCCCSSBHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhccccchhhhhccchhhh-ccCCCCchHHHH
Confidence 3699999999999999999999999999999999 9999999997 7788999999998877665 568899999999
Q ss_pred HhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 010652 260 LDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (505)
Q Consensus 260 ~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~ 295 (505)
.||++ ++.+.|+++|+|+|+...+ .+.|.
T Consensus 76 ~KDl~------l~~~~a~~~~~~~p~~~~~-~~~~~ 104 (133)
T d1vpda1 76 IKDLA------NALDTSHGVGAQLPLTAAV-MEMMQ 104 (133)
T ss_dssp HHHHH------HHHHHHHHHTCCCHHHHHH-HHHHH
T ss_pred HHHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 99997 9999999999999999876 44443
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.40 E-value=4.5e-13 Score=116.00 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=91.2
Q ss_pred CCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhc------ccccccCCc
Q 010652 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF------KVKDEYGEG 253 (505)
Q Consensus 180 ~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l------~~~~~~~~~ 253 (505)
|.|+|+.+|+++|.+.++.+++++|++.++++.| +|++.+.+++ +.+.+.|+.++...+.. ...++|.++
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~G-ld~~~~~eil---~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVYNPWPGVMENAPASRDYSGG 76 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---HhcccchhhhhhhhhhhhccchhhhcCCCCCC
Confidence 5799999999999999999999999999999999 9999999997 67889999998754321 112457889
Q ss_pred hhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 254 ~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
|.++.+.||++ ++.+.|++.|+|+|+...+ .+.|..
T Consensus 77 f~~~l~~KDl~------l~~~~a~~~g~~~p~~~~a-~~~~~~ 112 (134)
T d3cuma1 77 FMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRL 112 (134)
T ss_dssp SBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred cchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 99999999996 9999999999999999876 445544
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.40 E-value=2.3e-13 Score=124.88 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=111.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-------CCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-------LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~-------~~i~~~~s~~e~v~~l~~advIil 78 (505)
|.||+|||+|.||.++|..|+++||+|++|+|+++.++.+.+.+.+... .++.++.+++++++. +|+||+
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~---ad~iii 83 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILF 83 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSCEEE
T ss_pred eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCC---CCEEEE
Confidence 4579999999999999999999999999999999999988766533210 168889999999987 999999
Q ss_pred ecCCCchHHHHHHHHhhc-----cCCCCEEEeCCCCChhhHH-HHHHHHHHc----CCeEEcCCCCCChhhhhcCC--cc
Q 010652 79 LVKAGSPVDQTIAALSEH-----MSPGDCIIDGGNEWYLNTE-RRIHEASQK----GLLYLGMGVSGGEEGARHGP--SL 146 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~-----l~~g~iiId~st~~~~~t~-~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~--~i 146 (505)
+||. ..++.+++++.+. +.++.+|+.++.+....+. ...+.+.+. .+.++..|-. ..+-++.-| ..
T Consensus 84 avPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~-A~Ev~~~~pt~~v 161 (189)
T d1n1ea2 84 VIPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSF-AIEVATGVFTCVS 161 (189)
T ss_dssp CSCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCC-HHHHHTTCCEEEE
T ss_pred cCcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCc-HHHHHcCCCcEEE
Confidence 9998 5788999887653 4567778888877644433 333444332 2333433322 234555556 34
Q ss_pred cCCCCHHHHHHHHHHHH
Q 010652 147 MPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 147 ~~gg~~e~~~~v~~ll~ 163 (505)
+.+-+.+..+.++++|.
T Consensus 162 iAs~~~~~a~~i~~lfs 178 (189)
T d1n1ea2 162 IASADINVARRLQRIMS 178 (189)
T ss_dssp EECSSHHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHhC
Confidence 45568888888988886
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.39 E-value=1.6e-12 Score=117.62 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=89.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CC----CCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ----LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g~----~~i~~~~s~~e~v~~l~~advIil 78 (505)
+||+|||+|.||.++|..|+++||+|.+|||++++.+.+.+.+... +. .....+++++|.++. +|+||+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC---CCEEEE
Confidence 5899999999999999999999999999999999998887654211 00 023446788888887 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~ 124 (505)
++|+. .++.+++++.+++.++.+|+..++... .+....+.+...
T Consensus 79 ~v~~~-~~~~~~~~i~~~l~~~~~iv~~~g~~~-~~~~~~~~~~~~ 122 (184)
T d1bg6a2 79 VVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILREN 122 (184)
T ss_dssp CSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHT
T ss_pred EEchh-HHHHHHHHhhhccCCCCEEEEeCCCCc-cHHHHHHHHHHh
Confidence 99995 689999999999999999887666544 344555555544
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=7.1e-13 Score=114.39 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=90.8
Q ss_pred CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh-hcccccccCCchhHHHH
Q 010652 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD-IFKVKDEYGEGELVDKI 259 (505)
Q Consensus 181 ~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~-~l~~~~~~~~~~~ld~i 259 (505)
+|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+ .+.. ++|+++|.++.+
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-ld~~~~~~vl---~~s~~~s~~~~~~~p~~~~~-~~~~~~f~~~~~ 75 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQRVLT-RAFPKTFALGLL 75 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHHTTT-SCCCCSSBHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhhhhhhhhhhhhhHHHHH-HhhhhhhHHHHH
Confidence 489999999999999999999999999999999 9999999997 778889999988775 3433 678999999999
Q ss_pred HhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 010652 260 LDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (505)
Q Consensus 260 ~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~ 295 (505)
.||+. ++.+.|.++|+|+|+...+ .+.|.
T Consensus 76 ~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~ 104 (132)
T d2cvza1 76 VKDLG------IAMGVLDGEKAPSPLLRLA-REVYE 104 (132)
T ss_dssp HHHHH------HHHHHHTTTCCCCHHHHHH-HHHHH
T ss_pred hhHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 99996 9999999999999998875 44443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.36 E-value=8e-13 Score=120.86 Aligned_cols=156 Identities=16% Similarity=0.224 Sum_probs=107.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~-------~~g~~----------~i~~~~s~~e~v~ 68 (505)
..||+|||+|.||.++|..++.+|++|++||++++.+++..+... ..+.. ++..+.+.+++ .
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 82 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF-G 82 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG-G
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc-c
Confidence 468999999999999999999999999999999987665433210 01100 35555555543 3
Q ss_pred hcCCCcEEEEecCCCchHHH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCC-CCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~p-vsgg~~~a~~ 142 (505)
+ +|+|+.++|....++. ++.+|.+..+++.||...|++.+.+ ++.+.+... |.||+..| .+...
T Consensus 83 ~---adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~--~la~~~~~p~r~~g~Hf~nP~~~~~lV----- 152 (186)
T d1wdka3 83 N---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFNPVHMMPLV----- 152 (186)
T ss_dssp G---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCSSTTTCCEE-----
T ss_pred c---cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHH--HHHHhccCchheEeeccccCcccCCeE-----
Confidence 3 9999999999988775 4588888888888887766665433 344433222 45555433 11111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCC
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~ 180 (505)
-++.| .++++++.+..+++.+| +.++.+.+
T Consensus 153 --Eiv~~~~T~~~~~~~~~~~~~~lg------k~pv~v~d 184 (186)
T d1wdka3 153 --EVIRGEKSSDLAVATTVAYAKKMG------KNPIVVND 184 (186)
T ss_dssp --EEEECSSCCHHHHHHHHHHHHHTT------CEEEEEES
T ss_pred --EECCCCCCCHHHHHHHHHHHHHcC------CEEEEEec
Confidence 13433 58899999999999999 77777643
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.32 E-value=2.2e-12 Score=117.18 Aligned_cols=152 Identities=11% Similarity=0.108 Sum_probs=100.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC--hhHHHHHHHhhcccC---CC---CeeeeCCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT--TSKVDETLDRAHREG---QL---PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~--~~~~~~~~~~~~~~g---~~---~i~~~~s~~e~v~~l~~advIil 78 (505)
|||+|||+|.||.++|..|+++|++|.+|.|+ ++.++.+.+...+.. .+ ++...+++++++++ +|+|++
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---ad~Ii~ 77 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhc---cchhhc
Confidence 68999999999999999999999999999884 445666654332110 00 34556788888887 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhH--HHHHHHHHHc-C-----CeEEcCCCCCChhhhhcCC--cccC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT--ERRIHEASQK-G-----LLYLGMGVSGGEEGARHGP--SLMP 148 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t--~~~~~~l~~~-g-----i~~v~~pvsgg~~~a~~G~--~i~~ 148 (505)
+||. ..++.+++++.+.+.+..+++.+....+.+. ....+.+.+. + +.++..|- -..+-+..-| .++.
T Consensus 78 avps-~~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~-~A~Ei~~~~pt~~via 155 (180)
T d1txga2 78 GVST-DGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPA-IAREVAKRMPTTVVFS 155 (180)
T ss_dssp CSCG-GGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSC-CHHHHHTTCCEEEEEE
T ss_pred ccch-hhhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCc-cHHHHHcCCCcEEEEE
Confidence 9998 5899999999999976555544333322211 1122333221 1 22233332 2234455555 4556
Q ss_pred CCCHHHHHHHHHHHH
Q 010652 149 GGSFEAYNNIRDILQ 163 (505)
Q Consensus 149 gg~~e~~~~v~~ll~ 163 (505)
+.+.+..+.++++|+
T Consensus 156 s~~~~~a~~i~~~f~ 170 (180)
T d1txga2 156 SPSESSANKMKEIFE 170 (180)
T ss_dssp CSCHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHC
Confidence 678888888888875
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.22 E-value=6e-11 Score=108.76 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=98.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----------cCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----------EGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~-----------~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||+|.+|.++|..|+ +||+|++||.++++++.+...... ....++....+..+...+ +|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhc---ccc
Confidence 68999999999999998886 699999999999998877632100 000145556666666666 999
Q ss_pred EEEecCCCc----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC--CCCCh--hhhh
Q 010652 76 VIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG--VSGGE--EGAR 141 (505)
Q Consensus 76 Iil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p--vsgg~--~~a~ 141 (505)
|++++|.+. .++...+.+.. ..++.+++-.||..|.+++++.+.+.... ++-+| +.-|. ....
T Consensus 77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~iii~Stv~pgt~~~~~~~~~~~~--~~~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDR--IIFSPEFLRESKALYDNL 153 (196)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSC--EEECCCCCCTTSTTHHHH
T ss_pred ccccCCccccccCCCcceeEEeehhhhhhh-cccceeEEeeeecCceeeeeeeeccchhh--hccchhhcchhhhHhhcc
Confidence 999999873 23344444444 45788999999999999988877765543 33344 22221 1223
Q ss_pred cCCcccCCCCHHHHHHHHH
Q 010652 142 HGPSLMPGGSFEAYNNIRD 160 (505)
Q Consensus 142 ~G~~i~~gg~~e~~~~v~~ 160 (505)
+-+.++.|++.+...++..
T Consensus 154 ~p~riv~G~~~~~~~~~~~ 172 (196)
T d1dlja2 154 YPSRIIVSCEENDSPKVKA 172 (196)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCEEEEeCCHhhHHHHHH
Confidence 3336778876554343333
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.7e-11 Score=108.86 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=76.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||+|||+|.||+.+|..|+++||+|++++|++++.+..................+..+.... +|+||+++|+. ++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~iii~vka~-~~ 76 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLAT---SDLLLVTLKAW-QV 76 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHT---CSEEEECSCGG-GH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcc---cceEEEeeccc-ch
Confidence 699999999999999999999999999999998754332211111000011223344444555 99999999995 79
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
+++++.+.+.+.++.+|+.+.|+..
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred HHHHHhhccccCcccEEeeccCccc
Confidence 9999999999999999999988763
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.85 E-value=3.7e-09 Score=96.45 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=96.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+....-.. ... ++....++++++.. +|+|++++|-.+..
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-~~~-------~~~~~~~l~~ll~~---sD~i~~~~plt~~T 118 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-RAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEHN 118 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-HHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTC
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccch-hhh-------ccccccchhhcccc---CCEEEEeecccccc
Confidence 57999999999999999999999999999987653211 111 24667899999998 99999999988777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
+.++ .+.+..+++|.++|++|-+..-+...+.+.+.+..+.....-|.-.
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~ 169 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 169 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcCCC
Confidence 7777 5778889999999999999989999999999887554443334433
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.81 E-value=4.4e-09 Score=94.98 Aligned_cols=105 Identities=11% Similarity=0.192 Sum_probs=90.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|..+..-|.+|.+|||++.. . ......++++++.. +|+|++++|..+..
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~-------~------~~~~~~~l~ell~~---sDiv~~~~pl~~~t 106 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE-------G------PWRFTNSLEEALRE---ARAAVCALPLNKHT 106 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC-------S------SSCCBSCSHHHHTT---CSEEEECCCCSTTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc-------c------ceeeeechhhhhhc---cchhhccccccccc
Confidence 57999999999999999999999999999998642 1 12345789999887 99999999998887
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ ++.+..++++.++|++|.+..-+...+.+.++++.+.
T Consensus 107 ~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 107 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred ccccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence 7777 6788889999999999999888999999999887554
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.80 E-value=7.9e-09 Score=94.08 Aligned_cols=122 Identities=15% Similarity=0.209 Sum_probs=99.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+........... ......+++++++. +|+|++++|-.+..
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-------~~~~~~~l~~ll~~---sD~v~l~~plt~~T 117 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY-------QATFHDSLDSLLSV---SQFFSLNAPSTPET 117 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhcc-------cccccCCHHHHHhh---CCeEEecCCCCchH
Confidence 579999999999999999999999999999876543333222 13556799999998 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ ++.+..+++|.++|++|-+..-+...+.+.+++..+.....-|.-.++
T Consensus 118 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~EP 170 (191)
T d1gdha1 118 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP 170 (191)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred hheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCCC
Confidence 8877 678888999999999999999999999999988766655444554443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.75 E-value=1.2e-08 Score=93.37 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=96.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|..+..-|.+|.+||+....... ..+ ....++++++.. +|+|++++|-....
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~--------~~~~~l~~~l~~---sDii~~~~plt~~T 110 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KKG--------YYVDSLDDLYKQ---ADVISLHVPDVPAN 110 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HTT--------CBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc--cce--------eeeccccccccc---cccccccCCccccc
Confidence 57999999999999999999999999999987654222 111 234689999988 99999999998877
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ .+.+..+++|.++|+.|-+..-+...+.+.+.+..+.....-|.-.|+
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~Ep 163 (197)
T d1j4aa1 111 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEV 163 (197)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCT
T ss_pred cccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccCC
Confidence 7777 677788999999999999998899999998888766544444554443
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.73 E-value=1.3e-08 Score=92.35 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=93.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|||||+|.+|+.+|+.+..-|.+|.+||+........... ++....+++++.+. +|+|++++|-.+..
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-------~~~~~~~l~~~l~~---sD~v~~~~plt~~T 114 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL-------NLTWHATREDMYPV---CDVVTLNCPLHPET 114 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH-------TCEECSSHHHHGGG---CSEEEECSCCCTTT
T ss_pred cceeeccccccchhhhhhhhccCceEEEEeeccccccccccc-------cccccCCHHHHHHh---ccchhhcccccccc
Confidence 589999999999999999999999999999875433332222 24667899999988 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.
T Consensus 115 ~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ 156 (188)
T d2naca1 115 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 156 (188)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred hhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCce
Confidence 8887 6788889999999999999999999999998876554
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.72 E-value=2.3e-08 Score=90.41 Aligned_cols=119 Identities=15% Similarity=0.199 Sum_probs=96.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+......... .+ + ...+++|+++. +|+|++++|-.+..
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~~-------~-~~~~l~ell~~---sDiv~~~~Plt~~T 112 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-LG-------I-ELLSLDDLLAR---ADFISVHLPKTPET 112 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-HT-------C-EECCHHHHHHH---CSEEEECCCCSTTT
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-cC-------c-eeccHHHHHhh---CCEEEEcCCCCchh
Confidence 5799999999999999999999999999999876533322 21 2 24689999998 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ .+.+..++++.++|++|-+..-+...+.+.+.+..+.....-|.-.|
T Consensus 113 ~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~~~E 164 (184)
T d1ygya1 113 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATE 164 (184)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSS
T ss_pred hhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCCCCC
Confidence 8888 57888899999999999999999999999998876654433444333
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.65 E-value=1.7e-08 Score=92.43 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=95.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|..+..-|.+|.+||+.+.... . ......+++++... +|+|++++|.....
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------~----~~~~~~~l~~l~~~---~D~v~~~~plt~~T 111 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD-------H----PDFDYVSLEDLFKQ---SDVIDLHVPGIEQN 111 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC-------C----TTCEECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhh-------h----cchhHHHHHHHHHh---cccceeeecccccc
Confidence 5799999999999999999999999999998764310 0 11234689999988 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~ 138 (505)
+.++ .+.+..+++|.++|++|-+..-+...+.+.+++..+.....-|.-.|+
T Consensus 112 ~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP 164 (199)
T d1dxya1 112 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 164 (199)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred cccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCCC
Confidence 7777 577788999999999999999999999999987766554444554443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=1.9e-08 Score=91.25 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=93.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.+|..+|+.+..-|.+|.+||+...... . ......+++|+++. +|+|++++|-.+.
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------~----~~~~~~~l~ell~~---sDii~i~~plt~~ 109 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-------G----NATQVQHLSDLLNM---SDVVSLHVPENPS 109 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-------T----TCEECSCHHHHHHH---CSEEEECCCSSTT
T ss_pred ceEEEEeecccchhhhhhhcccccceEeeccccccchh-------h----hhhhhhhHHHHHhh---ccceeecccCCcc
Confidence 35899999999999999999999999999998754210 0 23456799999998 9999999998888
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
.+.++ ++.+..++++.++|++|-+..-+...+.+.+.+..+.....-|.
T Consensus 110 T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~ 159 (188)
T d1sc6a1 110 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 159 (188)
T ss_dssp TTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred hhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence 87777 67888899999999999999999999999998765544433333
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.60 E-value=5.7e-08 Score=86.77 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=51.3
Q ss_pred CcEEEE-cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLA-GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiI-GlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|||+|| |+|.||++||..|+++||+|.+|+|++++++.+.++....+........+....... .+.....++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 74 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEA---CDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHH---CSEEEECSCH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccch---hhhhhhheee
Confidence 689999 899999999999999999999999999998888765432110012223344444443 5566555544
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.59 E-value=9e-08 Score=81.38 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=77.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
+++.|+|+|.+|..+|..|.+.|++|+++|.++++++++...+... +....+-.++.+ .++++|.++++++++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~----~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~ 76 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHA----VIANATEENELLSLGIRNFEYVIVAIGANI 76 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEE----EECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcc----eeeecccchhhhccCCccccEEEEEcCchH
Confidence 3689999999999999999999999999999999999887654321 111112222222 2445999999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
....++..+....+...+++-..+. ...+.+...|+..+-.|
T Consensus 77 ~~~~~~~~~~~~~~~~~iiar~~~~------~~~~~l~~~Gad~vi~p 118 (134)
T d2hmva1 77 QASTLTTLLLKELDIPNIWVKAQNY------YHHKVLEKIGADRIIHP 118 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSH------HHHHHHHHHTCSEEECH
T ss_pred HhHHHHHHHHHHcCCCcEEeecccH------hHHHHHHHCCCCEEECh
Confidence 5544445555555555565554432 23444556677665433
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.53 E-value=1.6e-07 Score=82.66 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|||+|.||..++.+|...|. +|++++|+.++.+++.+.... .....+++.+.+.+ +|+||.|++++.
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~----~~~~~~~~~~~l~~---~Divi~atss~~ 96 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPH 96 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSS
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc----ccccchhHHHHhcc---CCEEEEecCCCC
Confidence 4689999999999999999999998 599999999999888775321 12334455555555 999999998765
Q ss_pred hH--HHHHHHHhhcc--CCCCEEEeCC
Q 010652 85 PV--DQTIAALSEHM--SPGDCIIDGG 107 (505)
Q Consensus 85 ~v--~~vl~~l~~~l--~~g~iiId~s 107 (505)
.+ .+.++.....- .+..+|||.+
T Consensus 97 ~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 97 PVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp CCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred ccccHhhhHHHHHhcccCCCeEEEeec
Confidence 43 44444443322 2445899985
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.53 E-value=2.8e-07 Score=81.41 Aligned_cols=119 Identities=9% Similarity=0.039 Sum_probs=79.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|.|||+|.||..+|.+|+++||+|+++||+.++.+++.+...... ..........+....+...|+++.++|... .
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~-~ 80 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHST-PISLDVNDDAALDAEVAKHDLVISLIPYTF-H 80 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEE-EEECCTTCHHHHHHHHTTSSEEEECSCGGG-H
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccc-cccccccchhhhHhhhhccceeEeeccchh-h
Confidence 58999999999999999999999999999999999999876532110 000111223333333445899999888753 3
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
..+.... ...+..++|.+... .....+.+.....+..++..
T Consensus 81 ~~~~~~~---~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 121 (182)
T d1e5qa1 81 ATVIKSA---IRQKKHVVTTSYVS-PAMMELDQAAKDAGITVMNE 121 (182)
T ss_dssp HHHHHHH---HHHTCEEECSSCCC-HHHHHTHHHHHHTTCEEECS
T ss_pred hHHHHHH---HhhccceeecccCc-HHHHHHHHHhccccceeehh
Confidence 3333333 33467788877654 34556666666666666543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.50 E-value=8.6e-07 Score=75.10 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=77.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhh--cCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS--IQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~--l~~advIil~vp~~~ 84 (505)
|+|-|+|+|.+|..+++.|.+.|++|.+.|.++++++++.+..... -+....+-.++.+. ++++|.++.+++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~---vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d- 76 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTGKE- 76 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh---hccCcccchhhhhhcChhhhhhhcccCCcH-
Confidence 6899999999999999999999999999999999999887652110 12222333444443 45799999888775
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
...-.+..++..+.+..+|+-..+.. ..+.+.+.|+.++
T Consensus 77 ~~N~~~~~~~k~~~~~~iI~~~~~~~------~~~~l~~~G~d~v 115 (132)
T d1lssa_ 77 EVNLMSSLLAKSYGINKTIARISEIE------YKDVFERLGVDVV 115 (132)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTT------HHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHcCCceEEEEecCHH------HHHHHHHCCCCEE
Confidence 44444455556677777776655432 2334555677554
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=2.6e-06 Score=74.76 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=76.4
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+||||||+|.||.. ....+... ++++. ++|+++++.+.+.+.. ++..+++.+++.++ +|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~------~~~~~~~~~~l~~~---~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW------RIPYADSLSSLAAS---CDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH------TCCBCSSHHHHHTT---CSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc------cccccccchhhhhh---cccccccccch
Confidence 68999999999986 45556554 66654 7899999988877643 34567889998876 99999999997
Q ss_pred chHHHHHHHHhhccCCC-CEEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 84 SPVDQTIAALSEHMSPG-DCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+.+ ...+. .| .++++- -.....+..++.+..++.|..+
T Consensus 73 ~h~~~~-~~al~---~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 73 SHFDVV-STLLN---AGVHVCVDKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp HHHHHH-HHHHH---TTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred hccccc-ccccc---ccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence 544433 33333 33 466663 2334567777777777777644
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.29 E-value=1.4e-06 Score=76.28 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=72.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||.|.-|.+-|+||.+.|.+|++--|...+ .+...+.+ +. ..+++|+++. +|+|++.+|+.
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~G-------f~-v~~~~eA~~~---aDiim~L~PD~- 83 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG-------LK-VADVKTAVAA---ADVVMILTPDE- 83 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTT-------CE-EECHHHHHHT---CSEEEECSCHH-
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhc-------cc-cccHHHHhhh---cCeeeeecchH-
Confidence 368999999999999999999999999998877654 33333332 33 4689999987 99999999984
Q ss_pred hHHHHH-HHHhhccCCCCEEEeCCC
Q 010652 85 PVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iiId~st 108 (505)
.-.++. +.+.|.|++|+.+.-...
T Consensus 84 ~q~~vy~~~I~p~lk~g~~L~FaHG 108 (182)
T d1np3a2 84 FQGRLYKEEIEPNLKKGATLAFAHG 108 (182)
T ss_dssp HHHHHHHHHTGGGCCTTCEEEESCC
T ss_pred HHHHHHHHhhhhhcCCCcEEEEecc
Confidence 445566 579999999998876543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.29 E-value=3.6e-06 Score=72.66 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=66.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHh----hcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~----~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
..+||+|||+|.+|.++|..|+.+| .+|.++|+++++.+..... ....+ .......+++++. .||+|++
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~-~~~~~~~d~~~~~----~adivvi 78 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTA-PKKIYSGEYSDCK----DADLVVI 78 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSC-CCEEEECCGGGGT----TCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccC-CceEeeccHHHhc----cccEEEE
Confidence 4579999999999999999999988 4899999999875432211 11111 1344556766543 3999999
Q ss_pred ecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 LVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+...+. .++++.+++.++ .+..+++..||-
T Consensus 79 tag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNP 123 (146)
T d1ez4a1 79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANP 123 (146)
T ss_dssp CCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred ecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCc
Confidence 874431 234445566664 467788888773
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.27 E-value=4.2e-06 Score=74.72 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=80.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+||||||+|.||...+..+... +++|+ ++|+++++.+.+.+..... .....++++++++++ .++|+|++++|+..
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~-~~iD~v~I~tp~~~ 78 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPTSL 78 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccc--cceeecCcHHHhhhc-cccceeeecccchh
Confidence 5899999999999999999876 56766 7899999888776543211 124678999999975 35899999999975
Q ss_pred hHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 85 PVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
..+-.. ..++.|. ++++- -.....+..++.+..++++..+
T Consensus 79 h~~~~~----~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 79 HVEWAI----KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184)
T ss_dssp HHHHHH----HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred hcchhh----hhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence 544332 2333454 45542 2235566777777777777654
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.22 E-value=6.2e-06 Score=71.26 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=68.5
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh---hcccCCCCe-eeeCCHHHHHhhcCCCc
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR---AHREGQLPL-TGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~---~~~~g~~~i-~~~~s~~e~v~~l~~ad 74 (505)
|+.....||+|||+|.+|..+|..|+.+|. ++.++|+++++++..... ....-.... ....+.++ .+ .+|
T Consensus 1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~-l~---daD 76 (148)
T d1ldna1 1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD-CR---DAD 76 (148)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG-TT---TCS
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH-hc---cce
Confidence 555455799999999999999999999886 799999999875432211 100000122 23345444 33 399
Q ss_pred EEEEecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 75 SVIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 75 vIil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
+|+++...+. .++++.+.+.++- +..+++..||-..
T Consensus 77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd 127 (148)
T d1ldna1 77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVD 127 (148)
T ss_dssp EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHH
T ss_pred eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccH
Confidence 9999774431 2455556777665 5667777777543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.18 E-value=2.4e-06 Score=74.85 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC-c
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-S 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~-~ 84 (505)
..|+.|||.|+.|..-++...+.|-+|+++|+++++.+++....... --....+.+.+.+.++++|+||.++--+ .
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~---~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR---VELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG---SEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc---ceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 46899999999999999999999999999999999998887654332 1233445545555555699999987321 1
Q ss_pred hHHHHH-HHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTI-AALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iiId~st~ 109 (505)
....++ ++++..+++|.+|||.+-.
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVDvaid 134 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVDVAVD 134 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred ccCeeecHHHHhhcCCCcEEEEeecC
Confidence 112222 6788889999999998754
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.17 E-value=1.7e-05 Score=70.56 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=77.5
Q ss_pred CCcEEEEcccHHHHHH-HHHHHhCC--CcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNL-ALNVAEKG--FPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~l-A~~La~~G--~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+.||||||+|.+|..+ ...+.+.+ ++|. ++|+++++.+.+.+... ....+++.+|++++ ...|.|++++|
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~-----~~~~~~~~~ell~~-~~id~v~I~tp 76 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG-----NPAVFDSYEELLES-GLVDAVDLTLP 76 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS-----SCEEESCHHHHHHS-SCCSEEEECCC
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccc-----ccceeeeeeccccc-cccceeecccc
Confidence 4689999999999874 66676643 4555 78999999888776532 13567999999875 34799999999
Q ss_pred CCchHHHHHHHHhhccCCC-CEEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 82 AGSPVDQTIAALSEHMSPG-DCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+.... +++..++. .| .++++- -+....+..++.+..++.+..+
T Consensus 77 ~~~h~-~~~~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~ 121 (181)
T d1zh8a1 77 VELNL-PFIEKALR---KGVHVICEKPISTDVETGKKVVELSEKSEKTV 121 (181)
T ss_dssp GGGHH-HHHHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred ccccc-cccccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 86543 44444443 33 466654 2334566777777777776543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.11 E-value=1e-05 Score=71.00 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=76.5
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQN-LALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~-lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+||||||+|.||.. ....+.+. +.++.++|+++++.+.+.+.... ...+++.+++++. ++|+|++++|+..
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~--~iD~V~I~tp~~~ 74 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV-----SATCTDYRDVLQY--GVDAVMIHAATDV 74 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC-----CCCCSSTTGGGGG--CCSEEEECSCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc-----ccccccHHHhccc--ccceecccccccc
Confidence 58999999999976 45566555 56888999999998888765321 1346788888763 4899999999975
Q ss_pred hHHHHHHHHhhccCCCCEEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 85 PVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
..+-+ ...+.. .-.++++- -.....+.+++.+...++|..+
T Consensus 75 H~~~~-~~al~~--gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 75 HSTLA-AFFLHL--GIPTFVDKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp HHHHH-HHHHHT--TCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred ccccc-cccccc--ccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 54433 333332 12466663 2234467777777777777654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.01 E-value=2.8e-05 Score=67.42 Aligned_cols=102 Identities=11% Similarity=0.156 Sum_probs=68.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh----cccC-CCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA----HREG-QLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~----~~~g-~~~i~~~~s~~e~v~~l~~advIil 78 (505)
+++||+|||+|.+|.++|..|+..++ ++.++|+++++++...... ...+ ...+....+.++..++ +|+|++
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---adiVvi 82 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIV 82 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC---CCeEEE
Confidence 45789999999999999999998886 7999999987654332211 0000 0134556677777776 999999
Q ss_pred ecCCCc--------------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 79 LVKAGS--------------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+...+. .++++++.+.++- ++.+++..||-.
T Consensus 83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPv 133 (154)
T d1pzga1 83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL 133 (154)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcH
Confidence 873210 2444555665544 567888877754
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.98 E-value=1.7e-05 Score=73.04 Aligned_cols=116 Identities=12% Similarity=0.073 Sum_probs=77.6
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
-+|||||+|.||.. +...+... +++|. ++|+++++.+.+.+..... ..++..++|.++++++ .+.|+|++++|+.
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~-~~~~~~~~d~~ell~~-~~iD~V~I~tp~~ 111 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD-PKIDAVYIILPNS 111 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC-TTCCEEEECSCGG
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccc-cccccccCchhhhccc-ccceeeeeccchh
Confidence 47999999999975 55555554 66765 8899999988887653110 0024557899998874 3579999999997
Q ss_pred chHHHHHHHHhhccCCC-CEEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 84 SPVDQTIAALSEHMSPG-DCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+-++..+. .| .++++- -+..+.+..++.+..++.+..+
T Consensus 112 ~H~~~~~~al~----~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 112 LHAEFAIRAFK----AGKHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp GHHHHHHHHHH----TTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHhhh----cchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 65544444433 33 456663 2335567777777777766654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.97 E-value=3.5e-05 Score=65.84 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHH----HHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDET----LDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~----~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.+|.++|..|+.+|. ++.++|+++++.+.. ..... .....++..+.+.+++.. +|+|+++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~----adiVvit 76 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKG----SEIIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTT----CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhcc----ccEEEEe
Confidence 699999999999999999998885 699999999875432 11110 000013555667664433 9999987
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
...+. .++++.+.+.++ .+..+++..||-
T Consensus 77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNP 120 (142)
T d1ojua1 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (142)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred ccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCC
Confidence 74321 233334455554 467788888884
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.95 E-value=1.2e-05 Score=72.76 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=67.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC------CcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG------FPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G------~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++|+|||.|.-|.+-|+||.+.| .+|.+-=|.. ...+.+.+.+... .+. ...+.+|+++. +|+|++.
T Consensus 45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v--~~~-~v~~v~EAv~~---ADiVmiL 118 (226)
T d1qmga2 45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSE--ENG-TLGDMWETISG---SDLVLLL 118 (226)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCG--GGT-CEEEHHHHHHT---CSEEEEC
T ss_pred CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCcc--CCC-cccCHHHHHhh---CCEEEEe
Confidence 57999999999999999999955 5577664433 3344444443210 000 13478888887 9999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~ 106 (505)
+|+. .-.++.+++.|+|++|+.+...
T Consensus 119 lPDe-~Q~~vy~~I~p~Lk~G~~L~Fa 144 (226)
T d1qmga2 119 ISDS-AQADNYEKVFSHMKPNSILGLS 144 (226)
T ss_dssp SCHH-HHHHHHHHHHHHSCTTCEEEES
T ss_pred cchH-HHHHHHHHHHHhcCCCceeeec
Confidence 9995 4556778999999999988764
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.6e-05 Score=69.29 Aligned_cols=90 Identities=10% Similarity=-0.026 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++++|+|.|.+|+.+|..+...|.+|.+||++|-+.-+..-.+ + ...+.++++.. +|+|++++.....+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG-------~-~v~~~~~a~~~---adivvtaTGn~~vI 93 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEG-------Y-EVTTMDEACQE---GNIFVTTTGCIDII 93 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------C-EECCHHHHTTT---CSEEEECSSCSCSB
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCc-------e-Eeeehhhhhhh---ccEEEecCCCccch
Confidence 5799999999999999999999999999999997644433332 2 34578888877 99999887653322
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
. .+-.+.+++|.++.+.+.-.
T Consensus 94 ~---~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 94 L---GRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp C---HHHHTTCCTTEEEEECSSST
T ss_pred h---HHHHHhccCCeEEEEecccc
Confidence 1 45667799999999976543
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.95 E-value=3.8e-05 Score=65.59 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh----hcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHR-EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~----~~~-~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.+|.++|..|+..|. ++.++|+++++.+..... ... ....++..+.+.+++ ++ +|+|+++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~-~d---advvvit 76 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADT-AN---SDIVIIT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGG-TT---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHh-cC---CeEEEEE
Confidence 689999999999999999999984 899999998875432211 000 000134445565544 33 9999998
Q ss_pred cCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.-.+ . .++++.+.+.++. |+.+++..||-
T Consensus 77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNP 120 (142)
T d1guza1 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNP 120 (142)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSS
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCC
Confidence 6321 1 2344456666654 67788888774
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.93 E-value=9.4e-05 Score=63.16 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=64.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHH----HHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDET----LDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~----~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.||+|||+|.+|..+|..|+.+|. ++.++|+++++.+.. .......+...+....+.+++ ++ +|+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~-~d---aDvVVita 77 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEIC-RD---ADMVVITA 77 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGG-TT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHh-hC---CcEEEEec
Confidence 589999999999999999999987 799999999875432 211111000134445566553 33 99999987
Q ss_pred CCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-.+. .++++.+++.++. ++.+++..||-.
T Consensus 78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPv 121 (143)
T d1llda1 78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPV 121 (143)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred ccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCch
Confidence 3321 2344445665654 566777777644
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.89 E-value=3.2e-05 Score=66.10 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=65.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh----c-ccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA----H-REGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~----~-~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+||+|||+|.+|.++|..|+.++. ++.++|+++++.+...... . .....++..+.+.+++.. +|+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~----advvvita 77 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTAN----SDVIVVTS 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTT----CSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcC----CCEEEEee
Confidence 589999999999999999998886 8999999988654322111 0 000114566778777644 89999988
Q ss_pred CCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..+. .++++++.+.++- +..+++-.||-
T Consensus 78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNP 120 (142)
T d1uxja1 78 GAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNP 120 (142)
T ss_dssp SCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSS
T ss_pred eccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCc
Confidence 4431 2344556666654 56677776663
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.88 E-value=3.7e-05 Score=65.53 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=62.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh----hcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~----~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.+|.++|..++.++. ++.++|+++++++..... ..... .......+.++ .+ .+|+|+++.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~-~~~~~~~~~~~-~~---~adivvita 75 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTR-RANIYAGDYAD-LK---GSDVVIVAA 75 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSC-CCEEEECCGGG-GT---TCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccc-cccccCCcHHH-hc---CCCEEEEec
Confidence 689999999999999999998875 799999999875433211 11110 01222334444 33 399999987
Q ss_pred CCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-.+ . .++++.+.+.++. |+.+++..||-.
T Consensus 76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPv 119 (140)
T d1a5za1 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (140)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred ccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcH
Confidence 332 1 1344445565544 667888877644
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.85 E-value=7.2e-05 Score=65.10 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=64.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHH----HhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETL----DRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~----~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
..||+|||+|.+|.++|..|+..|. ++.++|+++++.+... ......+...+....+.+++. .+|+|+++
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~----~adiVVit 95 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTA----NSKIVVVT 95 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGT----TCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcc----cccEEEEe
Confidence 4689999999999999999999998 7999999988753322 111100000233344555433 39999997
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.-... .++++..++.+. .++.+++-.||-.
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPv 140 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPV 140 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCch
Confidence 63321 244445566665 4667788777744
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.83 E-value=3.5e-05 Score=69.78 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=78.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|-|+|.+|..+|..|.+.|.+|+++|.+++++......+. . .-+++++... .||+++-|-..+...
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~-------~-~~~~~~~~~~--~~DI~iPcA~~~~I~ 97 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGH-------T-AVALEDVLST--PCDVFAPCAMGGVIT 97 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-------E-ECCGGGGGGC--CCSEEEECSCSCCBC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcc-------c-ccCccccccc--cceeeeccccccccc
Confidence 57999999999999999999999999999999998887765432 2 2356666653 489888776554333
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.+.++ .+ +-++|+...|.. .+.+...+.+.++|+.|+.
T Consensus 98 ~~~a~----~i-~ak~i~e~AN~p-~~~~~~~~~L~~rgI~~iP 135 (201)
T d1c1da1 98 TEVAR----TL-DCSVVAGAANNV-IADEAASDILHARGILYAP 135 (201)
T ss_dssp HHHHH----HC-CCSEECCSCTTC-BCSHHHHHHHHHTTCEECC
T ss_pred HHHHh----hh-hhheeeccCCCC-cchhhHHHHhcccceEEEe
Confidence 33333 34 346888877754 3444566788899998764
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.82 E-value=1e-05 Score=71.43 Aligned_cols=86 Identities=9% Similarity=0.237 Sum_probs=60.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||||||+|.||+..+..+.+. +++++ ++|+++++.. . .+.....+.+++.++ +|+|++|+|+.
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~-------~---~~~~~~~~~~~~~~~---~D~Vvi~tp~~ 69 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT-------K---TPVFDVADVDKHADD---VDVLFLCMGSA 69 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS-------S---SCEEEGGGGGGTTTT---CSEEEECSCTT
T ss_pred cceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc-------c---cccccchhhhhhccc---cceEEEeCCCc
Confidence 46899999999999999999875 56654 7898875311 1 134455566665555 99999999997
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
... +-..+.|..|.-+|++..
T Consensus 70 ~h~----~~a~~aL~aG~~vv~~~~ 90 (170)
T d1f06a1 70 TDI----PEQAPKFAQFACTVDTYD 90 (170)
T ss_dssp THH----HHHHHHHTTTSEEECCCC
T ss_pred ccH----HHHHHHHHCCCcEEEecC
Confidence 533 334455677887776543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.79 E-value=0.00016 Score=61.72 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=64.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCC---eeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLP---LTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~---i~~~~s~~e~v~~l~~advIil~v 80 (505)
.||+|||+ |.+|.++|..|+.+|. ++.++|+++.+.+.+--..... ..+ .....+..+..++ +|+|+++.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~-~~~~~~~~~~~~~~~~~~~---aDivVita 76 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET-RATVKGYLGPEQLPDCLKG---CDVVVIPA 76 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSS-SCEEEEEESGGGHHHHHTT---CSEEEECC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhh-hcCCCeEEcCCChHHHhCC---CCEEEECC
Confidence 48999995 9999999999999986 6999999887644322111100 001 1122344454554 99999986
Q ss_pred CCC---------------chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
..+ ..++++++.+.++ .+..+++..||-.
T Consensus 77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPv 120 (144)
T d1mlda1 77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPV 120 (144)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCH
T ss_pred CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCch
Confidence 432 1355666777776 5667777777744
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.78 E-value=0.00011 Score=62.70 Aligned_cols=98 Identities=10% Similarity=0.100 Sum_probs=57.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCC--Ceee-eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQL--PLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~--~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|||+|.+|..+|..++.+|. ++.++|+++++++.......+...+ .... ..+.++ ++.+|+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~----~~~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD----VKDCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG----GTTCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHH----hCCCceEEEecc
Confidence 589999999999999999999986 7999999997643222111100000 1222 223433 334999999853
Q ss_pred CCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+. .++++.+.+.++- +..+++..||-
T Consensus 78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNP 119 (142)
T d1y6ja1 78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNP 119 (142)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSS
T ss_pred cccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecCh
Confidence 321 1333344555544 56677777774
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.74 E-value=6.7e-05 Score=65.29 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=63.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
..||+|||+|.+|.++|..|+..|. ++.++|+++++++. +.......+........+.+++. + +|+|+++
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~-~---adivvit 94 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSA-N---SKLVIIT 94 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGT-T---EEEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhc-c---ccEEEEe
Confidence 4589999999999999999999987 79999999887543 22211110000234455665543 3 8999987
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
...+. .++++...+... .++.+++..||-
T Consensus 95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNP 138 (159)
T d2ldxa1 95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNP 138 (159)
T ss_dssp CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSS
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCc
Confidence 63321 122222334443 467788888773
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.72 E-value=3.4e-05 Score=68.30 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=71.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-----------------------eCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-----------------------HYT 62 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-----------------------~~s 62 (505)
..+|.|||.|+.|.+-++....-|-.|+++|+++++.+++.+.+.+. +.. ...
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~----i~~~~~~~~~~~~~~gyA~~~s~~~~~~~ 104 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKF----ITVDDEAMKTAETAGGYAKEMGEEFRKKQ 104 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEE----CCC-----------------------CCH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcce----EEEeccccccccccccchhhcCHHHHHHH
Confidence 35899999999999999999999999999999999988887765321 110 011
Q ss_pred HHHHHhhcCCCcEEEEec--CCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 63 PRDFVLSIQRPRSVIILV--KAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 63 ~~e~v~~l~~advIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.+.+.++++|+||.++ |...+-.-+-+++...+++|.+|||.+-
T Consensus 105 ~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 105 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence 223444466799999876 3222111122778888999999999864
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.68 E-value=0.00028 Score=61.91 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=51.6
Q ss_pred CCcEEEEcccHHHHHHHH--HHHhC----CCcEEEEeCChhHHHHHHH---hh-ccc-CCCCeeeeCCHHHHHhhcCCCc
Q 010652 6 LSRIGLAGLAVMGQNLAL--NVAEK----GFPISVYNRTTSKVDETLD---RA-HRE-GQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~--~La~~----G~~V~v~dr~~~~~~~~~~---~~-~~~-g~~~i~~~~s~~e~v~~l~~ad 74 (505)
.|||+|||+|..|..++. .++.. +.++.++|+++++++.... +. ... ...++..+++.+|.+.+ +|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~d---ad 78 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 78 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccC---CC
Confidence 479999999999987543 34432 4689999999987654221 10 000 01257788899998887 99
Q ss_pred EEEEecCCC
Q 010652 75 SVIILVKAG 83 (505)
Q Consensus 75 vIil~vp~~ 83 (505)
+|+.++..+
T Consensus 79 ~Vv~~~~~g 87 (171)
T d1obba1 79 FVINTAMVG 87 (171)
T ss_dssp EEEECCCTT
T ss_pred eEeeecccc
Confidence 999987543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.65 E-value=0.00031 Score=59.99 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=63.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHH----HhhcccCCC-CeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETL----DRAHREGQL-PLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~----~~~~~~g~~-~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+||+|||+|.+|.++|..|+.+|. ++.++|+++++.+... ...... .. ......+.+++ ++ +|+|+++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~-~~~~~~~~~d~~~l-~~---adiVVit 76 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANL-EAHGNIVINDWAAL-AD---ADVVIST 76 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS-SSCCEEEESCGGGG-TT---CSEEEEC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccccc-CCccceeccCHHHh-cc---ccEEEEe
Confidence 589999999999999999998874 7999999998754322 111111 01 12334555554 33 9999998
Q ss_pred cCCCc-------------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGS-------------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~-------------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
...+. .++++.+.+..+ .++.+++..||-.
T Consensus 77 aG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPv 125 (146)
T d1hyha1 77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPV 125 (146)
T ss_dssp CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred ccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcH
Confidence 54211 133333455543 4678888887754
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.61 E-value=0.0003 Score=60.44 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh----cccC-CCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA----HREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~----~~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.+|.++|..|..++. ++.+||+++++.+...... ...+ ...+....+.+++. + +|+|+++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~-~---advvvit 78 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLA-G---ADVVIVT 78 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGT-T---CSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccC-C---CcEEEEe
Confidence 4699999999999999998888875 7999999987654332111 0000 01344444555543 3 9999998
Q ss_pred cCCCc--------------------hHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 80 VKAGS--------------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 80 vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
.-.+. .++++.+.+... .++.+++..||-..
T Consensus 79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPvD 129 (150)
T d1t2da1 79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVD 129 (150)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHH
T ss_pred cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchH
Confidence 74321 234444555555 46788888877543
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.58 E-value=9.3e-05 Score=60.86 Aligned_cols=104 Identities=19% Similarity=0.152 Sum_probs=78.6
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++|+|||+ +..|..+.++|.+.||+|+..|.+.+.+ . +...+.+++|+-+. +|++++++|+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i---------~---G~~~y~sl~~lp~~---~D~vvi~vp~ 66 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI---------E---GLKCYRSVRELPKD---VDVIVFVVPP 66 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------T---TEECBSSGGGSCTT---CCEEEECSCH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc---------c---Cccccccchhcccc---ceEEEEEeCH
Confidence 47999994 7899999999999999988887664321 1 46778888887765 8999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+.+.++++++...- ...+++..++.. ++..+.+++.|+.+++.
T Consensus 67 -~~~~~~l~~~~~~g-~k~v~~~~g~~~----~~~~~~a~~~gi~vigp 109 (116)
T d1y81a1 67 -KVGLQVAKEAVEAG-FKKLWFQPGAES----EEIRRFLEKAGVEYSFG 109 (116)
T ss_dssp -HHHHHHHHHHHHTT-CCEEEECTTSCC----HHHHHHHHHHTCEEECS
T ss_pred -HHHHHHHHHHHhcC-CceEEeccchhh----HHHHHHHHHcCCEEEcC
Confidence 46778887776643 446777766543 34566777889988863
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.57 E-value=0.00011 Score=63.64 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=60.1
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhCC-CcE-EEEeCChhHH-HHHHHhhcccCCCCe-eeeCCHHHHHhhc--CCCcEEEE
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEKG-FPI-SVYNRTTSKV-DETLDRAHREGQLPL-TGHYTPRDFVLSI--QRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~G-~~V-~v~dr~~~~~-~~~~~~~~~~g~~~i-~~~~s~~e~v~~l--~~advIil 78 (505)
+.||||||+|.+|.. +...|.+.. .++ .+.+|+++.. ..+.+.. ++ ..+.+.+++.+.. .+.|+|++
T Consensus 4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~------~i~~~~~~~d~l~~~~~~~~iDiVf~ 77 (157)
T d1nvmb1 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDFVFD 77 (157)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc------CCcccccceeeeeecccccccCEEEE
Confidence 468999999999986 455665553 354 4568887532 2222221 22 2344566665532 24789999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
++|++..+... .....++.|..+||.|.
T Consensus 78 ATpag~h~~~~--~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 78 ATSASAHVQNE--ALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp CSCHHHHHHHH--HHHHHHCTTCEEEECST
T ss_pred cCCchhHHHhH--HHHHHHHcCCEEEEccc
Confidence 99987544322 23344678999999987
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.50 E-value=4e-05 Score=67.57 Aligned_cols=114 Identities=21% Similarity=0.152 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|.|+|+|-++++++..|.+.+-+|++++|++++.+.+.+.....+ ++......+ ..+..+|+||-|+|.+..
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~---~~~~~~diiIN~tp~g~~- 92 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDS---IPLQTYDLVINATSAGLS- 92 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGG---CCCSCCSEEEECCCC----
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhcc---ccccccceeeeccccccc-
Confidence 57999999999999999999988899999999999888876543221 233222221 123458999999998732
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
..........+.++.+++|..=..|..| ...+..+++|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~~ 132 (171)
T d1p77a1 93 GGTASVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGLT 132 (171)
T ss_dssp ----CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTCC
T ss_pred ccccchhhhhhcccceeeeeeccCcccH-HHHHHHHHcCCC
Confidence 1111111122446788999865555555 334445566653
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.50 E-value=0.00016 Score=62.51 Aligned_cols=90 Identities=10% Similarity=0.002 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|+|.|..|+.+|..+...|-+|++++++|-+.-+..-.+ +. ..+.+|++.. +|++|.++.....+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdG-------f~-v~~~~~a~~~---aDi~vTaTGn~~vI 92 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNVDVI 92 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSSSSB
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcC-------Cc-cCchhHcccc---CcEEEEcCCCCccc
Confidence 4799999999999999999999999999999996644443332 33 4788888887 99999998775422
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
. .+-...++.|.|+.+.+.-.
T Consensus 93 ~---~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 93 K---LEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp C---HHHHTTCCTTCEEEECSSTT
T ss_pred c---HHHHHHhhCCeEEEeccccc
Confidence 1 45567789999999887654
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.50 E-value=0.00044 Score=63.83 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=73.7
Q ss_pred CCcEEEEcccHHH----HHHHHHHHh--CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGLAVMG----QNLALNVAE--KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG----~~lA~~La~--~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
..||||||+|.+| ......+.+ .+++|+ ++|+++++.+++.+..... ....++++++++++ ...|+|++
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~iD~V~i 91 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVV 91 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEE
T ss_pred CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccc---cceeecchhhcccc-cccceeec
Confidence 4689999998754 444445554 356766 7899999988877653211 24667899999875 34789999
Q ss_pred ecCCCchHHHHHHHHhhcc---CCCCEEEeCC-CCChhhHHHHHHHHHHcC
Q 010652 79 LVKAGSPVDQTIAALSEHM---SPGDCIIDGG-NEWYLNTERRIHEASQKG 125 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l---~~g~iiId~s-t~~~~~t~~~~~~l~~~g 125 (505)
++|+....+.+...+.... ..-.++++-= .....+..++.+..++++
T Consensus 92 ~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~ 142 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA 142 (237)
T ss_dssp CSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred cCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcC
Confidence 9998655544444443321 1224677631 223455666666665553
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00017 Score=64.75 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=52.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+||.|+| .|..|+.++..|+++||+|.++.|++++.......+. .+.. ..+.+++.+.++++|+||.++..
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~-----~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPA-----HVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCS-----EEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccccc-----ccccccccchhhHHHHhcCCCEEEEEecc
Confidence 57899999 5999999999999999999999999987543322211 1221 13555555556679999998854
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=5.6e-05 Score=66.42 Aligned_cols=112 Identities=19% Similarity=0.139 Sum_probs=75.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|.|+|+|-.+++++..|.+.|.+|+++||++++.+++.+.....+ .+.. .+..+.. ...+|+||-++|.+..-
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~--~~~~-~~~~~~~--~~~~dliIN~Tp~G~~~ 93 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQA-LSMDELE--GHEFDLIINATSSGISG 93 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEE-CCSGGGT--TCCCSEEEECCSCGGGT
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc--cccc-ccccccc--ccccceeecccccCccc
Confidence 57999999999999999999999999999999999988876543221 2222 2333321 23489999999887321
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
+...--...+.++.+++|.--.+. .| ...+..+++|.
T Consensus 94 -~~~~~~~~~~~~~~~v~D~vY~P~-~T-~ll~~A~~~G~ 130 (170)
T d1nyta1 94 -DIPAIPSSLIHPGIYCYDMFYQKG-KT-PFLAWCEQRGS 130 (170)
T ss_dssp -CCCCCCGGGCCTTCEEEESCCCSS-CC-HHHHHHHHTTC
T ss_pred -CCCCCcHHHhccCcEEEEeecCCC-CC-HHHHHHHHcCC
Confidence 110001234778899999866543 33 34445566665
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.45 E-value=0.0003 Score=60.01 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChh
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~ 40 (505)
|||+|||+ |.+|.++|..|+..|. ++.++|++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence 68999995 9999999999999985 8999999864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.36 E-value=0.0014 Score=56.78 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=59.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee----CCHHHHHhhc-----CCCcEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH----YTPRDFVLSI-----QRPRSVI 77 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~----~s~~e~v~~l-----~~advIi 77 (505)
.+|.|+|+|.+|...+..+...|.+|+++|+++++.+.+.+.+... .... .+..+..+.+ ..+|+||
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~----~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi 103 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV----TLVVDPAKEEESSIIERIRSAIGDLPNVTI 103 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE----EEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE----EEeccccccccchhhhhhhcccccCCceee
Confidence 4699999999999999999999999999999999988777655321 1111 1222222221 2367777
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++.... .++.....+.++-.++-.+.
T Consensus 104 d~~g~~~----~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 104 DCSGNEK----CITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp ECSCCHH----HHHHHHHHSCTTCEEEECSC
T ss_pred ecCCChH----HHHHHHHHHhcCCceEEEec
Confidence 7775532 23333344555555554443
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.35 E-value=0.00032 Score=58.95 Aligned_cols=108 Identities=17% Similarity=0.027 Sum_probs=78.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcc--
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV-- 402 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~-- 402 (505)
.|+|+.+|.++|.+.++.+.+++|++.+.+++. +|.+.+.++-+.| --+|+.++.........+. .++.
T Consensus 2 ~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~G------ld~~~~~eil~~~-~g~s~~~~~~~~~~~~~~~--~~~~~~ 72 (134)
T d3cuma1 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG------LEAKVLAEIMRRS-SGGNWALEVYNPWPGVMEN--APASRD 72 (134)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CCHHHHHHHHHTS-TTCCHHHHHCCCSTTSSTT--SGGGGT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHhc-ccchhhhhhhhhhhhccch--hhhcCC
Confidence 478999999999999999999999999988643 9999999999987 3578887753221111110 0110
Q ss_pred -hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010652 403 -DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 403 -~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (505)
++.|. +.-...+++-+...|-+.|+|+|....+...|..
T Consensus 73 ~~~~f~--~~l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~ 112 (134)
T d3cuma1 73 YSGGFM--AQLMAKDLGLAQEAAQASASSTPMGSLALSLYRL 112 (134)
T ss_dssp TCSSSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCCCcc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 11122 2234566788899999999999999999887753
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.0014 Score=55.77 Aligned_cols=116 Identities=12% Similarity=0.193 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCC-eeeeCCHHHHHh--hcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP-LTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~-i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
..|-|+|.|.+|..++..|.+.|++|++.|.++++..+..+.....+ .. +....+-.++.+ .++++|.|+++.+++
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~-~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d 82 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDN-ADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTT-CEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCC-cEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence 36899999999999999999999999999999876544433321111 11 122223344443 356799999999885
Q ss_pred chHHHHHHHHhhccCCC-CEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 84 SPVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.....++ ..+..+.+. .+|+-..+. .. ...+...|+.++-
T Consensus 83 ~~n~~~~-~~~r~~~~~~~iia~~~~~--~~----~~~l~~~Gad~vi 123 (153)
T d1id1a_ 83 ADNAFVV-LSAKDMSSDVKTVLAVSDS--KN----LNKIKMVHPDIIL 123 (153)
T ss_dssp HHHHHHH-HHHHHHTSSSCEEEECSSG--GG----HHHHHTTCCSEEE
T ss_pred HHHHHHH-HHHHHhCCCCceEEEEcCH--HH----HHHHHHCCCCEEE
Confidence 4322222 223333333 566654432 22 2334555775553
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.24 E-value=0.0036 Score=52.07 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=80.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
|+|+-+|.++|.+.++.+.+.+|++.+..++ ++|.+++.++.+.|. -+|..++.....+-+++.. +.
T Consensus 3 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gid~~~~~~~l~~~~-~~S~~~~~~~~~~~~~~~~------~~ 69 (133)
T d1vpda1 3 GAGNVTKLANQVIVALNIAAMSEALTLATKA------GVNPDLVYQAIRGGL-AGSTVLDAKAPMVMDRNFK------PG 69 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCCHHHHHHHHHHHTTCCC------CS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-ccchhhhhccchhhhccCC------CC
Confidence 6889999999999999999999999998854 399999999999874 5788887755544333211 22
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (505)
|.- .-...+++-+...|-+.|+|+|....+..+|+.
T Consensus 70 f~~--~l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~ 105 (133)
T d1vpda1 70 FRI--DLHIKDLANALDTSHGVGAQLPLTAAVMEMMQA 105 (133)
T ss_dssp SBH--HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred chH--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 332 234466788899999999999999999998764
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.002 Score=54.66 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=59.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHh-C--CCcEEEEeCChhHHHHHHHhhcccCCCC---eeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAG-LAVMGQNLALNVAE-K--GFPISVYNRTTSKVDETLDRAHREGQLP---LTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~-~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~---i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+||| .|.+|.++|..|+. . +.++.++|+.+.......+......... +....+.++ .++ +|+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~-~~~---aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA-LEG---ADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHH-HTT---CSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccc-cCC---CCEEEEC
Confidence 6899999 59999999998864 3 4689999987643222222110000001 112334443 344 9999998
Q ss_pred cCCC---------------chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.-.+ ..++++.+++.++- ++.++|..||-.
T Consensus 77 aG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPv 121 (145)
T d2cmda1 77 AGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPV 121 (145)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred CCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCc
Confidence 7332 13555667777755 567788877743
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.22 E-value=0.00027 Score=68.39 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=73.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~-G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.++...+..|... . .+|.+|+|++++.+.+.+..... .+..+.++++.+.. +|+|+.++++..
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~---~~~~~~~~~~a~~~---aDiV~taT~s~~ 199 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR---GISASVQPAEEASR---CDVLVTTTPSRK 199 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT---TCCEEECCHHHHTS---SSEEEECCCCSS
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhc---CCccccchhhhhcc---ccEEEEeccCcc
Confidence 5799999999999999888753 2 37999999999998887654432 35566677877776 999999999876
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
++ ++ ...+++|..|.-.++..|.
T Consensus 200 P~---~~--~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 200 PV---VK--AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp CC---BC--GGGCCTTCEEEECSCCSTT
T ss_pred cc---cc--hhhcCCCCeEeecCCcccc
Confidence 53 21 2468899999888876653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.0013 Score=57.13 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=75.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhc-----CCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSI-----QRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l-----~~advIil 78 (505)
.+|.|+|+|.+|...+..+...|. +|++.|+++++.+.+.+.++.. ... ..++.+..+.+ .++|+||.
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~----~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL----VLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE----EEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc----cccccccccccccccccccCCCCceEEEe
Confidence 469999999999999999999998 6999999999998877665431 111 23444443322 24899999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
++.... .++.....+.+|-.++-.+........... .+-.+++.+.+
T Consensus 104 ~~G~~~----~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~-~~~~k~l~i~G 150 (171)
T d1pl8a2 104 CTGAEA----SIQAGIYATRSGGTLVLVGLGSEMTTVPLL-HAAIREVDIKG 150 (171)
T ss_dssp CSCCHH----HHHHHHHHSCTTCEEEECSCCCSCCCCCHH-HHHHTTCEEEE
T ss_pred ccCCch----hHHHHHHHhcCCCEEEEEecCCCCCccCHH-HHHHCCcEEEE
Confidence 997743 344555566666666666554332222222 23345677765
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.18 E-value=0.00062 Score=62.48 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=80.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|.|-|.|.+|..+|+.|.+.|.+|++.|.+++.++.+..... .. ..+++++... .||+++-|--.+...
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g------~~-~~~~~~~~~~--~cDIl~PcA~~~~I~ 110 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------AD-AVAPNAIYGV--TCDIFAPCALGAVLN 110 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CE-ECCGGGTTTC--CCSEEEECSCSCCBS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcC------Cc-ccCCcccccc--cccEecccccccccC
Confidence 57999999999999999999999999999999999888776532 22 3456665543 499999887665433
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
++.++. +. =++|+...|..+.+. +..+.|.++|+.|+.
T Consensus 111 ~~~~~~----l~-ak~Ive~ANn~~t~~-ea~~~L~~rGI~~iP 148 (230)
T d1leha1 111 DFTIPQ----LK-AKVIAGSADNQLKDP-RHGKYLHELGIVYAP 148 (230)
T ss_dssp TTHHHH----CC-CSEECCSCSCCBSSH-HHHHHHHHHTCEECC
T ss_pred hHHhhc----cC-ccEEEecccCCCCCc-hHHHHHHhhCcEEEe
Confidence 333333 32 368888887766443 566778899998774
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.18 E-value=0.00024 Score=62.13 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|+|+|-++++++..|.+.|. +|++++|++++.+.+.+... .....+.. ...+|+||-|+|-|-
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~------~~~~~~~~-----~~~~DliINaTpiGm 85 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE-----NQQADILVNVTSIGM 85 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT-----TCCCSEEEECSSTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh------hhhhhccc-----ccchhhheeccccCC
Confidence 3579999999999999999999997 79999999999888876432 22222221 124899999998652
Q ss_pred h--HHHH---HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 85 P--VDQT---IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~--v~~v---l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
. .+.. +. ...++++.+++|.--.+. .| .+.+..+++|...++
T Consensus 86 ~~~~~~~~l~~~--~~~~~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~i~ 132 (167)
T d1npya1 86 KGGKEEMDLAFP--KAFIDNASVAFDVVAMPV-ET-PFIRYAQARGKQTIS 132 (167)
T ss_dssp TTSTTTTSCSSC--HHHHHHCSEEEECCCSSS-SC-HHHHHHHHTTCEEEC
T ss_pred cccccccccccc--HhhcCCcceEEEEeeccC-CC-HHHHHHHHCCCeEEE
Confidence 1 0000 00 011346789999866544 34 345556677776554
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.18 E-value=0.00046 Score=58.41 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=77.9
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ +..|..++.+|.++||+|+..|...+.+ . +.....+++|+-.. .|++++++|+
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i---------~---G~~~~~sl~dlp~~---iD~v~i~vp~ 84 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV---------L---GRKCYPSVLDIPDK---IEVVDLFVKP 84 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------T---TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc---------C---CCcccccccccCcc---ceEEEEEeCH
Confidence 47999996 6799999999999999988888653211 1 46778898887665 8999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+.+.++++++... ....+++..+... ++..+.+.+.|+.+++
T Consensus 85 -~~~~~~~~e~~~~-g~k~v~~~~G~~~----ee~~~~a~~~gi~vig 126 (139)
T d2d59a1 85 -KLTMEYVEQAIKK-GAKVVWFQYNTYN----REASKKADEAGLIIVA 126 (139)
T ss_dssp -HHHHHHHHHHHHH-TCSEEEECTTCCC----HHHHHHHHHTTCEEEE
T ss_pred -HHHHHHHHHHHHh-CCCEEEEeccccC----HHHHHHHHHCCCEEEc
Confidence 5788888887764 3445666666544 2455667778998886
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00018 Score=56.45 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.++|.|+|+|..|.+.|+.|.+.|++|++||.++.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 35799999999999999999999999999998653
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.13 E-value=0.0018 Score=53.72 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=63.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v-~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|||+|+|+ |.||+.++..+.+.|+++.. +|++.. +.+..+|+||=...+ +
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------------------~~~~~~DVvIDFS~p-~ 52 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------------------EELDSPDVVIDFSSP-E 52 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------------------EECSCCSEEEECSCG-G
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------------------HHhccCCEEEEecCH-H
Confidence 68999996 99999999999999998763 454321 112238998877655 4
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pv 133 (505)
.+.+.++.... .+.-+|-+||++..+..+..+.+.+ .+..+.+|.
T Consensus 53 ~~~~~l~~~~~---~~~p~ViGTTG~~~~~~~~i~~~ak-~~pv~~a~N 97 (128)
T d1vm6a3 53 ALPKTVDLCKK---YRAGLVLGTTALKEEHLQMLRELSK-EVPVVQAYS 97 (128)
T ss_dssp GHHHHHHHHHH---HTCEEEECCCSCCHHHHHHHHHHTT-TSEEEECSC
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCCCHHHHHHHHHHHh-hCCEEeeec
Confidence 56666655443 4677888999887666555555543 355555553
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.07 E-value=0.0002 Score=59.88 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=72.4
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+|+|||+ |.+|..+.++|.+.| ++|+..|.+.+.+ . +...+.|++|+-.. +|++++++|
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i---------~---G~~~y~sl~dlp~~---vDlvvi~vp 73 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV---------Q---GVKAYKSVKDIPDE---IDLAIIVVP 73 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE---------T---TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc---------C---CeEeecchhhcCCC---CceEEEecC
Confidence 57999996 899999999998876 6898888764321 1 46778888887665 899999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCCh-hhH----HHHHHHHHHcCCeEEc
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNT----ERRIHEASQKGLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~t----~~~~~~l~~~gi~~v~ 130 (505)
+ +.+.++++++...--++.+++..+-... ..- +++.+...+.|+++++
T Consensus 74 ~-~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G 126 (129)
T d2csua1 74 K-RFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (129)
T ss_dssp H-HHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred h-HHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence 8 5788888887765433333332221111 111 2233344455888775
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00057 Score=60.35 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=76.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh---cccCCC--CeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA---HREGQL--PLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~---~~~g~~--~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|.|+|+|-+|++++..|.+.|. +++++||++++.+++.... ...... .+....+.+++.+.+..+|+||-++
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 579999999999999999999997 6899999988766544311 100000 1122234445544444599999999
Q ss_pred CCCchH--HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 81 KAGSPV--DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 81 p~~~~v--~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
|.+..- .+.+..-...++++.+++|..-.. ..| ...+..++.|..+++
T Consensus 99 p~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p-~~T-~ll~~a~~~g~~~i~ 148 (182)
T d1vi2a1 99 KVGMKPLENESLVNDISLLHPGLLVTECVYNP-HMT-KLLQQAQQAGCKTID 148 (182)
T ss_dssp STTSTTSCSCCSCCCGGGSCTTCEEEECCCSS-SSC-HHHHHHHTTTCEEEC
T ss_pred CCccccccchhhhhHHHhhhcchhhHHhhcCc-ccc-HHHHHHHHCcCeEec
Confidence 976321 000000123477889999996543 334 334445667776664
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.03 E-value=0.00036 Score=61.02 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=67.9
Q ss_pred cCCCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 4 SALSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 4 ~~~~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+.+++|||||+|.||...+..|.+.. ..+.+++....+ +.... .-....+.+|+++. ..+|+|++++|
T Consensus 5 ~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~e~l~~-~~iD~V~I~tp 74 (172)
T d1lc0a1 5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-----ELGSL----DEVRQISLEDALRS-QEIDVAYICSE 74 (172)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-----CCCEE----TTEEBCCHHHHHHC-SSEEEEEECSC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-----HHHHh----hccCcCCHHHHHhC-CCcchhhhccc
Confidence 34578999999999999988887543 234444433221 00111 11234588998874 34799999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+....+ .+...++. .-.++++- -.....+.+++.+...++|..+
T Consensus 75 ~~~H~~-~~~~al~~--gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~ 119 (172)
T d1lc0a1 75 SSSHED-YIRQFLQA--GKHVLVEYPMTLSFAAAQELWELAAQKGRVL 119 (172)
T ss_dssp GGGHHH-HHHHHHHT--TCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred cccccc-cccccccc--chhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence 975543 33333332 12466663 1234567777777777777654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.0041 Score=53.62 Aligned_cols=117 Identities=10% Similarity=0.111 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|.|+|+|.+|...+..+...|.++++.++++++.+.+.+.+... +.-..+........++.|++|.++..+..+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~----~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 107 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE----VVNSRNADEMAAHLKSFDFILNTVAAPHNL 107 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE----EEETTCHHHHHTTTTCEEEEEECCSSCCCH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE----EEECchhhHHHHhcCCCceeeeeeecchhH
Confidence 4699999999999999888889999999999999987777665431 233344444445556689999999876555
Q ss_pred HHHHHHHhhccCCCCEEEeCCC-CChhhHHHHHHHHHHcCCeEEcCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGN-EWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st-~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
+.. ...+.++-.++..+. ..+..... ...+-.+++.+.+..
T Consensus 108 ~~~----~~~l~~~G~iv~~G~~~~~~~~~~-~~~l~~k~~~i~Gs~ 149 (168)
T d1uufa2 108 DDF----TTLLKRDGTMTLVGAPATPHKSPE-VFNLIMKRRAIAGSM 149 (168)
T ss_dssp HHH----HTTEEEEEEEEECCCC-------C-HHHHHTTTCEEEECC
T ss_pred HHH----HHHHhcCCEEEEeccCCCCccccc-HHHHHHCCcEEEEEe
Confidence 443 345555555555543 22222222 222334567776654
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.01 E-value=0.0019 Score=51.07 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=62.7
Q ss_pred chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhh
Q 010652 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~ 262 (505)
.++++|++.|.+.+..++.++|.+.++++.| +|..++.+++.. +.....++ ..+...-.|+|..+.....
T Consensus 3 ~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g-~d~~~v~~~~~~-d~ri~~~~------~~~~pG~G~GG~ClpKD~~-- 72 (98)
T d1mv8a1 3 VAEMIKYTCNVWHAAKVTFANEIGNIAKAVG-VDGREVMDVICQ-DHKLNLSR------YYMRPGFAFGGSCLPKDVR-- 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHTT-CTTTTTSS------TTCSCCSCCCSSSHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhc-Cccccccc------cccCCcccCCccccchhHH--
Confidence 5789999999999999999999999999998 999999988721 11111111 1112222355554433222
Q ss_pred hCCCccHHHHHHHHHHcCCCcchhHHHH
Q 010652 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 263 ~~~kgtg~~~~~~A~~~gvp~p~i~~A~ 290 (505)
.....|.+.|++.+++.++.
T Consensus 73 --------al~~~a~~~~~~~~ll~~~~ 92 (98)
T d1mv8a1 73 --------ALTYRASQLDVEHPMLGSLM 92 (98)
T ss_dssp --------HHHHHHHHTTCCCTTGGGHH
T ss_pred --------HHHHHHHHcCCChHHHHHHH
Confidence 45678899999999998763
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.002 Score=55.70 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=50.1
Q ss_pred CcEEEEcccHHHHHHHHHHH-h--C---CCcEEEEeCChhHHHHHHHhh---cccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVA-E--K---GFPISVYNRTTSKVDETLDRA---HREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-~--~---G~~V~v~dr~~~~~~~~~~~~---~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|||+|||.|..|.+++.... . + +.++.++|+++++.+...+.. ... ..++...++.++.+++ +|+|+
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~-~~~~~~t~~~~~~l~~---aDvVV 76 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKD-RFKVLISDTFEGAVVD---AKYVI 76 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTT-SSEEEECSSHHHHHTT---CSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhcc-CceEEEecCcccccCC---CCEEE
Confidence 68999999999988775422 1 1 358999999999876433211 111 1245666777777776 99999
Q ss_pred EecCCC
Q 010652 78 ILVKAG 83 (505)
Q Consensus 78 l~vp~~ 83 (505)
++.-.+
T Consensus 77 ita~~~ 82 (162)
T d1up7a1 77 FQFRPG 82 (162)
T ss_dssp ECCCTT
T ss_pred EecccC
Confidence 987654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.94 E-value=0.0022 Score=54.88 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=63.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEE--eCChhHHHHHHHhhcccC---CCCeeeeCCHHHHHhhcCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVY--NRTTSKVDETLDRAHREG---QLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~--dr~~~~~~~~~~~~~~~g---~~~i~~~~s~~e~v~~l~~ 72 (505)
.+||+|||+ |.+|.++|..|+..+. ...++ +++.++.+.......... ...+..+.+..+..++
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD--- 80 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc---
Confidence 459999996 9999999999998764 12334 344444443322111000 0035666777776666
Q ss_pred CcEEEEecCCC---------------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHH
Q 010652 73 PRSVIILVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTER 116 (505)
Q Consensus 73 advIil~vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~ 116 (505)
+|+|+++--.. ..++++.+.+..+.+++.+|+-.|| |-++..
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t 137 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNA 137 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHH
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHH
Confidence 99999976221 1234444566666666777777776 445433
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.93 E-value=0.0018 Score=53.49 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=62.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhh--cCCCcEEEEecCCCch
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS--IQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~--l~~advIil~vp~~~~ 85 (505)
.|-|+|.|.+|..++..| +|++|.+.|.++++.+.+...+... +.+..+-++..+. +.+++.++++.+++..
T Consensus 2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~----i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANF----VHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEE----EESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccc----cccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 578999999999999998 4678899999999988887654321 2233334455543 5679999999887543
Q ss_pred HHHHHHHHhhccCCC-CEEEeCCC
Q 010652 86 VDQTIAALSEHMSPG-DCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g-~iiId~st 108 (505)
...++. ....+.+. .+++-..+
T Consensus 76 n~~~~~-~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 76 TIHCIL-GIRKIDESVRIIAEAER 98 (129)
T ss_dssp HHHHHH-HHHHHCSSSCEEEECSS
T ss_pred hHHHHH-HHHHHCCCceEEEEEcC
Confidence 322223 33334444 56665543
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.90 E-value=0.0042 Score=53.99 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=65.9
Q ss_pred CcEEEEcccHHHH--HHHHHHHhC-C---CcEEEEeCChhH--HHHHHH---hhc-ccC-CCCeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGLAVMGQ--NLALNVAEK-G---FPISVYNRTTSK--VDETLD---RAH-REG-QLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGlG~mG~--~lA~~La~~-G---~~V~v~dr~~~~--~~~~~~---~~~-~~g-~~~i~~~~s~~e~v~~l~~a 73 (505)
+||.|||+|..|. .++..+... . -++.++|+++++ .+.+-. ... ..+ ..++..+++..+..++ +
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g---a 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG---A 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---C
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC---C
Confidence 6899999997764 344444432 2 389999998864 222211 000 000 1245677888887776 9
Q ss_pred cEEEEecCCCch-----------------------------------HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHH
Q 010652 74 RSVIILVKAGSP-----------------------------------VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRI 118 (505)
Q Consensus 74 dvIil~vp~~~~-----------------------------------v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~ 118 (505)
|+|+++...+.. ++++++.+... .|+.+++..||-...-+....
T Consensus 79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPvdv~t~~~~ 157 (169)
T d1s6ya1 79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAVL 157 (169)
T ss_dssp SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHH
T ss_pred CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChHHHHHHHHH
Confidence 999999865421 34444555554 578888888886544444333
Q ss_pred H
Q 010652 119 H 119 (505)
Q Consensus 119 ~ 119 (505)
+
T Consensus 158 k 158 (169)
T d1s6ya1 158 R 158 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=96.86 E-value=0.0032 Score=54.68 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=68.6
Q ss_pred CCcEEEEcccHHHHHHH--HHHHh-CC---CcEEEEeCChhHHHHHH---Hhhc-ccC-CCCeeeeCCHHHHHhhcCCCc
Q 010652 6 LSRIGLAGLAVMGQNLA--LNVAE-KG---FPISVYNRTTSKVDETL---DRAH-REG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA--~~La~-~G---~~V~v~dr~~~~~~~~~---~~~~-~~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
..||+|||.|..|.+.+ ..+.. .. -+|.++|+++++++... +... ..+ ..++....+.+|.++. +|
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~---AD 79 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VD 79 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CS
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC---CC
Confidence 35899999999887643 22322 22 37999999999865322 1110 000 1246778898888887 99
Q ss_pred EEEEecCCCc-----------------------------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHH
Q 010652 75 SVIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119 (505)
Q Consensus 75 vIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~ 119 (505)
+||++.-.+. .+.++++.+... .|+.+++..||-...-|....+
T Consensus 80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~-~P~A~li~~TNPvdv~t~~~~k 158 (167)
T d1u8xx1 80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEATRR 158 (167)
T ss_dssp EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHHHH
T ss_pred EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHHHHHHHH
Confidence 9999985431 123334444444 4788888888865444444443
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.84 E-value=0.0045 Score=52.20 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=58.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCCh--hHHH----HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGF--PISVYNRTT--SKVD----ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~--~V~v~dr~~--~~~~----~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
.||+||| .|.+|.++|..|..+|. ++.++|++. ++.+ ++...........+ ...+++++. .+|+|+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i-~~~~~~~~~----~aDiVv 75 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV-RQGGYEDTA----GSDVVV 75 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEE-EECCGGGGT----TCSEEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceE-eeCCHHHhh----hcCEEE
Confidence 4899999 69999999999999987 799999753 2222 22211111100122 234655543 399999
Q ss_pred EecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 78 ILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++.-.+ . .++++.+.+..+- ++.+++..||-.
T Consensus 76 itaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPv 122 (142)
T d1o6za1 76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPV 122 (142)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSH
T ss_pred EecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChH
Confidence 876321 1 1333445555544 567777776643
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.84 E-value=0.00049 Score=62.73 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=32.7
Q ss_pred cCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 4 ~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
...+||.|||.|.+|.+.|..|+++|++|+++||++
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345689999999999999999999999999999864
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.83 E-value=0.0018 Score=51.00 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=45.3
Q ss_pred CCcEEEEcccHHH-HHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMG-QNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG-~~lA~~La~~G~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.++|=|||.|-.| ++||+.|.+.||+|+++|+.. ..++.+.+.+.. +....+.+. +.+ +|+||..
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~-----v~~g~~~~~-i~~---~d~vV~S 74 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAK-----IYIGHAEEH-IEG---ASVVVVS 74 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCE-----EEESCCGGG-GTT---CSEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCe-----EEECCcccc-CCC---CCEEEEC
Confidence 4689999999999 778999999999999999874 345666655431 232233332 333 7777664
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.83 E-value=0.0013 Score=51.10 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=36.2
Q ss_pred CcEEEEcccHHHH-HHHHHHHhCCCcEEEEeCChh-HHHHHHHhh
Q 010652 7 SRIGLAGLAVMGQ-NLALNVAEKGFPISVYNRTTS-KVDETLDRA 49 (505)
Q Consensus 7 ~~IgiIGlG~mG~-~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~ 49 (505)
|||=|||.|-+|. +||+.|.++|++|+++|+.+. .++++.+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~G 46 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLG 46 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCC
Confidence 6899999999996 789999999999999999874 456666554
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.83 E-value=0.0092 Score=49.37 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=76.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHH-HHhcCCCCCCCcchh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK-AYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~-~~~~~~~~~~ll~~~ 404 (505)
|+++-+|.+.|.+..+.+++++|++.+-++. ++|++++.++.+.| --+|..++.... ....+.. ++
T Consensus 2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gld~~~~~~vl~~s-~~~s~~~~~~~p~~~~~~~~------~~ 68 (132)
T d2cvza1 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQ------GVSAEKALEVINAS-SGRSNATENLIPQRVLTRAF------PK 68 (132)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCBHHHHHTHHHHTTTSCC------CC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhh-hhhhhhhhhhhhHHHHHHhh------hh
Confidence 5788899999999999999999999998854 39999999999876 346777765332 2222211 12
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFD 442 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~ 442 (505)
.|. +.-...+++-+...|-+.|+|+|....+...|.
T Consensus 69 ~f~--~~~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~ 104 (132)
T d2cvza1 69 TFA--LGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYE 104 (132)
T ss_dssp SSB--HHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred hhH--HHHHhhHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 232 223456778899999999999999999988664
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.79 E-value=0.0013 Score=63.91 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+..-+..+.. .+ -+|.+|||++++.+++.+......+..+..+.+++++++. +|+|++++++..
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~---ADIi~t~Tas~s 205 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADKA 205 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCSS
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhc---CCceeeccccCC
Confidence 579999999999988887754 34 3799999999999888865432111357789999999998 999999886531
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
...+++ ...+++|..|.-.++-.|.
T Consensus 206 -~~Pv~~--~~~l~pG~hI~aiGs~~p~ 230 (340)
T d1x7da_ 206 -YATIIT--PDMLEPGMHLNAVGGDCPG 230 (340)
T ss_dssp -EEEEEC--GGGCCTTCEEEECSCCBTT
T ss_pred -CCcccc--hhhcCCCCEEeecccchhh
Confidence 111221 2457889988887776554
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.79 E-value=0.00067 Score=57.10 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=79.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ +..|..+..+|.+.||++..++.++.. .. .. +...+.++.++-.. .|++++++|+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-----~~--i~---g~~~~~~l~~i~~~---iD~v~v~~p~ 80 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-----EE--LF---GEEAVASLLDLKEP---VDILDVFRPP 80 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-----SE--ET---TEECBSSGGGCCSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-----ce--ee---ceecccchhhccCC---CceEEEeccH
Confidence 46999997 889999999999999999999876531 00 11 35677888887664 8999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+.+.++++++... ....+++..+... .+..+.+++.|+.++.
T Consensus 81 -~~v~~~v~~~~~~-g~k~i~~q~G~~~----~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 81 -SALMDHLPEVLAL-RPGLVWLQSGIRH----PEFEKALKEAGIPVVA 122 (136)
T ss_dssp -HHHTTTHHHHHHH-CCSCEEECTTCCC----HHHHHHHHHTTCCEEE
T ss_pred -HHHHHHHHHHHhh-CCCeEEEecCccC----HHHHHHHHHcCCEEEc
Confidence 5677888777664 4567777666543 3456677788998885
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.75 E-value=0.00021 Score=62.96 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=73.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCC---eeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP---LTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~---i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.++|-|+|.|-++++++..|.+.| +|++++|++++.+.+.+......... .....+++.. +..+|+||.++|.
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~dliIn~tp~ 93 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVD---LDGVDIIINATPI 93 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCC---CTTCCEEEECSCT
T ss_pred CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhc---cchhhhhccCCcc
Confidence 357999999999999999998877 89999999999888765322100000 0112233322 2348999999987
Q ss_pred CchHHHHHHHH--hhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 83 GSPVDQTIAAL--SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l--~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+..-....... ...+.++.+++|..-.+..+ .+.+..++.|...++
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 94 GMYPNIDVEPIVKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTIN 141 (177)
T ss_dssp TCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEEC
T ss_pred cccccccccchhhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccC
Confidence 63211000001 12356788999987655443 334445666766654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.74 E-value=0.0044 Score=52.89 Aligned_cols=106 Identities=14% Similarity=0.033 Sum_probs=64.9
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHh---hcccCCCCeeeeCCHHHHHhhcC
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLDR---AHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~~~--~~~~~~~---~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
..+||+|||+ |.+|.++|..|+..+. ++..+|.+..+ .+.+.-. ........+....+..+..++
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD-- 79 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT--
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCC--
Confidence 3469999995 9999999999987542 47788876543 3333211 110000035667787877776
Q ss_pred CCcEEEEecCCC---------------chHHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 72 RPRSVIILVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 72 ~advIil~vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
+|+|+++-..+ ..++++.+.+..+.++.-++|..|| |-++.
T Consensus 80 -~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN--PvD~m 135 (154)
T d5mdha1 80 -LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN--PANTN 135 (154)
T ss_dssp -CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred -ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC--cHHHH
Confidence 99999976332 1244555666666554445666665 44443
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.67 E-value=0.004 Score=54.52 Aligned_cols=95 Identities=19% Similarity=0.315 Sum_probs=60.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEE-eC-ChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF-PISVY-NR-TTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~-~V~v~-dr-~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|+||||+|+ |..|.-|.+.|.++-+ ++... .+ +..+ +.......... ......+++++.++ +|++++++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~---~~~~~~~~~~~~~~---~dvvf~a~ 74 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLEN---SILSEFDPEKVSKN---CDVLFTAL 74 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCC---CBCBCCCHHHHHHH---CSEEEECC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhcc---ccccccCHhHhccc---cceEEEcc
Confidence 469999995 9999999999998753 55433 22 2222 22222211110 11223566777666 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
|.+... ++.+.. .+..|||.|+.+--
T Consensus 75 p~~~s~-----~~~~~~-~~~~VIDlSadfRl 100 (176)
T d1vkna1 75 PAGASY-----DLVREL-KGVKIIDLGADFRF 100 (176)
T ss_dssp STTHHH-----HHHTTC-CSCEEEESSSTTTC
T ss_pred ccHHHH-----HHHHhh-ccceEEecCccccc
Confidence 997432 233433 68899999987643
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.0021 Score=54.58 Aligned_cols=95 Identities=12% Similarity=0.146 Sum_probs=54.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-C---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKG-F---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G-~---~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.||||||+ |.+|+-|...|.++. | +++.+..+...-.... ..... .......+..++ .. +|++|+++|
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-~~~~~--~~~~~~~~~~~~-~~---~DivF~a~~ 74 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-FGGTT--GTLQDAFDLEAL-KA---LDIIVTCQG 74 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-GGTCC--CBCEETTCHHHH-HT---CSEEEECSC
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-ccCCc--eeeecccchhhh-hc---CcEEEEecC
Confidence 48999996 999999998777653 3 4555554432211100 00000 011112233333 44 999999998
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.+ ........+... ..+.+|||.|+.+
T Consensus 75 ~~-~s~~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 75 GD-YTNEIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp HH-HHHHHHHHHHHT-TCCCEEEECSSTT
T ss_pred ch-HHHHhhHHHHhc-CCCeecccCCccc
Confidence 85 445555555442 2346899998865
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.57 E-value=0.0025 Score=55.63 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=60.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhc---CCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSI---QRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l---~~advIil~vp 81 (505)
.+|.|+|+|.+|...+..+...|. +|++.|++++|.+.+.+.++.. -+.. ..+..+.+.++ ..+|+||.++.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~---~i~~~~~~~~~~v~~~t~g~G~D~vid~~g 105 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD---ILNYKNGHIEDQVMKLTNGKGVDRVIMAGG 105 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE---EECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc---cccccchhHHHHHHHHhhccCcceEEEccC
Confidence 479999999999999998888997 6999999999988777665421 0000 12233333332 23688888887
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
....++.. ...+.++..++..+
T Consensus 106 ~~~~~~~a----~~~~~~~G~iv~~G 127 (174)
T d1jqba2 106 GSETLSQA----VKMVKPGGIISNIN 127 (174)
T ss_dssp CTTHHHHH----HHHEEEEEEEEECC
T ss_pred CHHHHHHH----HHHHhcCCEEEEEe
Confidence 65434333 33344555555554
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.49 E-value=0.0016 Score=55.37 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CC---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-GF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-G~---~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||||||. |..|+-|.+.|.++ .| ++..+..+... .+........ .......+.+. .+. +|++|+|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk~~~~~~~~--~~~~~~~~~~~-~~~---~DvvF~alp 73 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VPAPNFGKDA--GMLHDAFDIES-LKQ---LDAVITCQG 73 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SBCCCSSSCC--CBCEETTCHHH-HTT---CSEEEECSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-ccccccCCcc--eeeecccchhh-hcc---ccEEEEecC
Confidence 68999995 99999999887764 34 34444322110 0000000000 01122223333 333 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.+ ...++...+... ....+|||.|..+
T Consensus 74 ~~-~s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 74 GS-YTEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HH-HHHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred ch-HHHHHhHHHHHc-CCceEEEeCCccc
Confidence 96 456666665542 2346899999876
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.45 E-value=0.012 Score=51.14 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=37.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~ 49 (505)
.+|.|+|+|.+|...+..+...|. +|++.|+++++.+.+.+.+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG 73 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG 73 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCccchhheeccccccccccccccccccccccccccc
Confidence 469999999999999999999997 7999999999988776554
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.43 E-value=0.0015 Score=55.35 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=54.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~---~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.|+|||||+ |..|.-|.+.|.+++| ++.....+...-+.+ ..... .+.......+... .+|++|+++|
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i-~~~~~----~~~~~~~~~~~~~---~~d~vf~a~p 73 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM-GFAES----SLRVGDVDSFDFS---SVGLAFFAAA 73 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE-EETTE----EEECEEGGGCCGG---GCSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce-eeccc----cchhccchhhhhc---cceEEEecCC
Confidence 479999996 9999999999987665 555543222110000 00000 1111111122223 3999999998
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.+ ........+ ...|.+|||.|+.+
T Consensus 74 ~~-~s~~~~~~~---~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 74 AE-VSRAHAERA---RAAGCSVIDLSGAL 98 (144)
T ss_dssp HH-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred cc-hhhhhcccc---ccCCceEEeechhh
Confidence 85 344444444 34789999998865
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.025 Score=51.69 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=50.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-----CCHHHHHhhcCCCcEEEEec
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-----YTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~-----~s~~e~v~~l~~advIil~v 80 (505)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.++.... ....+ ++.+++++.+.+-|++|-+.
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~---~~~~~Dv~d~~~v~~~~~~~g~iDilVnnA 84 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI---EPVCVDLGDWEATERALGSVGPVDLLVNNA 84 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTC---EEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCC---eEEEEeCCCHHHHHHHHHHhCCceEEEecc
Confidence 44444 6 588999999999999999999999999998887654321 11111 23355666777789888765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.00079 Score=58.47 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=50.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhh-cCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS-IQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~-l~~advIil~vp~~ 83 (505)
.+|.|+|+|.+|...+..+...|.+|++.|+++++.+.+.+.|+.. +....+..+..+. ....|+++.++...
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~----~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH----YIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE----EEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcE----EeeccchHHHHHhhhcccceEEEEecCC
Confidence 4799999999999988888888999999999999998887766431 1111222223322 23357777776553
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.28 E-value=0.0059 Score=53.41 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=58.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCC----hh-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPIS-VYNRT----TS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~-G~~V~-v~dr~----~~-~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+||+|+| .|..|+-|.+.|..+ .+++. ++-++ .. +....................+....... .|++|
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~dvvf 77 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSAD---VDVVF 77 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTT---CCEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcc---cceee
Confidence 46999999 599999999999998 56665 33322 11 22222111100000122233333333333 89999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
+++|++. ..+....+ ...|..|||.|..+--
T Consensus 78 ~alp~~~-s~~~~~~~---~~~~~~vIDlSadfRl 108 (179)
T d2g17a1 78 LATAHEV-SHDLAPQF---LQAGCVVFDLSGAFRV 108 (179)
T ss_dssp ECSCHHH-HHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred ccccchh-HHHHhhhh---hhcCceeecccccccc
Confidence 9999863 33343333 3478899999987643
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.28 E-value=0.015 Score=45.55 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=60.3
Q ss_pred chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhh
Q 010652 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~ 262 (505)
.++++|++.|.+.+..++.++|.+.++++.| ++..++.+.+.. .....+ ..+.....|++..+.+ |
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g-~d~~~v~~~~~~--d~~~~~-------~~~~pg~g~GG~ClpK----D 68 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRK-LNSHMIIQGISY--DDRIGM-------HYNNPSFGYGGYSLPK----D 68 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHT--STTTCS-------SSCCCCSSCCSSHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHh--ccccCC-------ccccCCCCcccccCcc----c
Confidence 4789999999999999999999999999998 999988877531 111111 1223333466655433 3
Q ss_pred hCCCccHHHHHHHHHHcCCCcchhHHHH
Q 010652 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 263 ~~~kgtg~~~~~~A~~~gvp~p~i~~A~ 290 (505)
. ++. .+.+.|++.|++.++.
T Consensus 69 ~-------~al-~~~~~~~~~~ll~~~~ 88 (98)
T d1dlja1 69 T-------KQL-LANYNNIPQTLIEAIV 88 (98)
T ss_dssp H-------HHH-HHHHTTSSCSHHHHHH
T ss_pred H-------HHH-HHHhcCCCcHHHHHHH
Confidence 2 233 4577899999998764
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.16 E-value=0.0068 Score=50.49 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=67.2
Q ss_pred CCcEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChhHH-------HHHHHhhcccCCCCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLA----------VMGQNLALNVAEKGFPISVYNRTTSKV-------DETLDRAHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG----------~mG~~lA~~La~~G~~V~v~dr~~~~~-------~~~~~~~~~~g~~~i~~~~s~~e~v~ 68 (505)
..||+|+|+- .-...++..|.++|++|.+||..-+.. +.+....... +...+.++.++++
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHV---SSLLVSDLDEVVA 89 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHH---HTTBCSCHHHHHH
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccc---cceeehhhhhhhh
Confidence 3589999984 577889999999999999999643211 1111110000 2345789999999
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
. +|+|+++++... .+ .+...+.++.+|+|+-+..+.
T Consensus 90 ~---~D~ivi~t~h~~-f~----~l~~~~~~~~~I~D~~~~~~~ 125 (136)
T d1mv8a3 90 S---SDVLVLGNGDEL-FV----DLVNKTPSGKKLVDLVGFMPH 125 (136)
T ss_dssp H---CSEEEECSCCGG-GH----HHHHSCCTTCEEEESSSCCSS
T ss_pred h---ceEEEEEeCCHH-HH----HHHHHhcCCCEEEECCCCCCh
Confidence 8 999999999864 33 344456678999999887653
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.0035 Score=54.16 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=67.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHH-HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKV-DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~-G~~V~-v~dr~~~~~-~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..+||+|+|+ |.||+.++..+.+. +++++ ++||..... ..-.......+..++....+++++.+. +|+||-..
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~---~DViIDFs 79 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD---FDVFIDFT 79 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS---CSEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcc---cceEEEec
Confidence 3569999995 99999999988765 66654 567654321 000000000001145667787777665 99998876
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS 122 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~ 122 (505)
.+ +.+.+.++.. ...+.-+|-+||+...+..+..+.+.
T Consensus 80 ~p-~~~~~~~~~a---~~~~~~~ViGTTG~~~~~~~~i~~~a 117 (162)
T d1diha1 80 RP-EGTLNHLAFC---RQHGKGMVIGTTGFDEAGKQAIRDAA 117 (162)
T ss_dssp CH-HHHHHHHHHH---HHTTCEEEECCCCCCHHHHHHHHHHT
T ss_pred cH-HHHHHHHHHH---HhccceeEEecCCCcHHHHHHHHHHc
Confidence 55 3555554433 34577888899987655444444443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.03 E-value=0.011 Score=54.64 Aligned_cols=84 Identities=15% Similarity=0.312 Sum_probs=58.0
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKA 82 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~ 82 (505)
+||++| | .+-+|..+|+.|++.|++|.+.||++++.+++.++....| .+++. .=+.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g-------------------~~~~~~~~Dv~~ 61 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------------GHAVAVKVDVSD 61 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTS
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeeCCC
Confidence 478777 5 4779999999999999999999999998877665421110 22222 23344
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+.++++++.+.....+=|++|+....
T Consensus 62 ~~~v~~~~~~~~~~~g~iDilVnnAG~ 88 (255)
T d1gega_ 62 RDQVFAAVEQARKTLGGFDVIVNNAGV 88 (255)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCccEEEecccc
Confidence 456777777777766666788876443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.02 E-value=0.012 Score=51.82 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=36.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~ 48 (505)
++|-|.| .|-+|..+|+.|++.|.+|++.+|++++.+++.+.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~ 66 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 66 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHH
Confidence 4577777 69999999999999999999999999988777654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.98 E-value=0.0078 Score=51.53 Aligned_cols=44 Identities=9% Similarity=0.217 Sum_probs=38.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|.+|.+.|+++++.+.+.+.++
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence 46999999999999999888999999999999999887776553
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0057 Score=52.80 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=57.8
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-+. +|.+|+..|.++|..|++++... .++.+...+ +|+||.++..+..
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------------------~~l~~~~~~---ADivI~a~G~p~~ 93 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 93 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred ceEEEEeccccccHHHHHHHHHhhcccccccccc---------------------chhHHHHhh---hhHhhhhccCccc
Confidence 5799999865 99999999999999999997543 244555565 9999999977643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++ ...+++|.++||.+...
T Consensus 94 i~------~~~vk~g~vvIDvGi~~ 112 (166)
T d1b0aa1 94 IP------GDWIKEGAIVIDVGINR 112 (166)
T ss_dssp BC------TTTSCTTCEEEECCCEE
T ss_pred cc------ccccCCCcEEEecCcee
Confidence 32 24678999999998763
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.95 E-value=0.011 Score=51.33 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=29.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-CcEE-EEeCChhHH
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKG-FPIS-VYNRTTSKV 42 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G-~~V~-v~dr~~~~~ 42 (505)
|++||||.|.|.+|+.+.+.+.++. .+|. +.|.+++..
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~ 40 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE 40 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH
Confidence 3579999999999999999998754 5554 567776543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.014 Score=53.40 Aligned_cols=81 Identities=12% Similarity=0.260 Sum_probs=56.9
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.++... . ...+..=+.+.+
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~-----------------~---~~~~~~Dv~~~~ 63 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA-----------------N---GKGLMLNVTDPA 63 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC-----------------C---CcEEEEEecCHH
Confidence 366666 5 57899999999999999999999999988877654211 0 112222244556
Q ss_pred hHHHHHHHHhhccCCCCEEEeCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~s 107 (505)
.++++++.+.....+=|++|+..
T Consensus 64 ~v~~~~~~~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 64 SIESVLEKIRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHHHHHHHHHTCSCSEEEECC
T ss_pred HhhhhhhhhhcccCCcceehhhh
Confidence 67777777777666667777654
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.92 E-value=0.02 Score=49.98 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=28.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEE-EeCChhHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG-FPISV-YNRTTSKV 42 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G-~~V~v-~dr~~~~~ 42 (505)
-||||.|.|.+|+.+++.+.++. ++|.. .|+++...
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~ 39 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE 39 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHH
Confidence 48999999999999999999764 57665 46666543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.92 E-value=0.0098 Score=54.92 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=56.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCC
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~ 83 (505)
||++| | .+-+|.++|+.|+++|++|.+.+|+++++++..++.... . .++..+ =+.+.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~----------------g---~~~~~~~~Dvs~~ 63 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA----------------G---VEADGRTCDVRSV 63 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeecCCH
Confidence 68777 4 578999999999999999999999999887766542111 0 222222 23444
Q ss_pred chHHHHHHHHhhccCCCCEEEeCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
+.++.+++.+.....+=|++|+..
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnA 87 (257)
T d2rhca1 64 PEIEALVAAVVERYGPVDVLVNNA 87 (257)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecc
Confidence 567777777777665557777754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.90 E-value=0.013 Score=46.97 Aligned_cols=89 Identities=13% Similarity=0.028 Sum_probs=54.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeee---eCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTG---HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~---~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||.|..|..-++.|.+.|.+|++++..... ...+.+.+ +++. ..+.++ +..+++|+.+..
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~------~i~~~~~~~~~~d----l~~~~lv~~at~ 81 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG------MLTLVEGPFDETL----LDSCWLAIAATD 81 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT------SCEEEESSCCGGG----GTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcC------CceeeccCCCHHH----hCCCcEEeecCC
Confidence 358999999999999999999999999999876543 23333322 1222 123333 233788888766
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+. .+..-+-.... +..++|+...
T Consensus 82 d~-~~n~~i~~~a~---~~~ilVNv~D 104 (113)
T d1pjqa1 82 DD-TVNQRVSDAAE---SRRIFCNVVD 104 (113)
T ss_dssp CH-HHHHHHHHHHH---HTTCEEEETT
T ss_pred CH-HHHHHHHHHHH---HcCCEEEeCC
Confidence 64 44433322222 2345555443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.89 E-value=0.0029 Score=57.79 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=32.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
...||.|||.|.-|..+|..|+++|++|++++++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 346899999999999999999999999999998754
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.014 Score=53.65 Aligned_cols=84 Identities=10% Similarity=0.149 Sum_probs=60.2
Q ss_pred cEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEecCCC
Q 010652 8 RIGLA-GL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (505)
Q Consensus 8 ~IgiI-Gl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~ 83 (505)
|+.+| |. +-+|..+|..|+++|++|.+.||++++++++.++.... . .++ +..=+.+.
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~----------------~---~~~~~~~~Dvs~~ 68 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----------------G---AKVHTFVVDCSNR 68 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 56666 65 66999999999999999999999999988776542111 0 233 33334555
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.++.+++.+......=+++|++....
T Consensus 69 ~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 69 EDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCceeEeecccc
Confidence 567777788877777778888876543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.85 E-value=0.0031 Score=57.82 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
|+|.|||.|.-|...|..|+++|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 689999999999999999999999999999875
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.83 E-value=0.019 Score=52.66 Aligned_cols=83 Identities=10% Similarity=0.107 Sum_probs=58.0
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|+.+| | .+-+|..+|+.|+++|++|.+.||++++.+++.++... . +..+-.=+.+.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~ 65 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----------------A---ARYVHLDVTQPA 65 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----------------G---EEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC-----------------c---ceEEEeecCCHH
Confidence 466666 6 47899999999999999999999999988877654211 1 112222234555
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++++.....+=|++|+....
T Consensus 66 ~v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 66 QWKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCeEEEECCcc
Confidence 6777777777766666788876544
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.83 E-value=0.051 Score=47.07 Aligned_cols=106 Identities=12% Similarity=0.072 Sum_probs=65.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHh---hcccCCCCeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLDR---AHREGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~~~--~~~~~~~---~~~~g~~~i~~~~s~~e~v~~l~~a 73 (505)
.||.|+|+ |.+|.+++..|+.... .+.++|++... ++.+.-. ........+..+++..+..++ +
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~---a 101 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---V 101 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccC---C
Confidence 37999996 9999999999997532 56677876642 2322211 110000035567777777776 9
Q ss_pred cEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHH
Q 010652 74 RSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 74 dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~ 117 (505)
|+||+.--.+ . .++++.+.+..+.+++.+|+-.|| |-++...
T Consensus 102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ 158 (175)
T d7mdha1 102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNAL 158 (175)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHH
Confidence 9999986222 1 244444666666666777777777 4554443
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.011 Score=51.21 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=58.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-+ .+|.+||..|+++|..|++++.... ++.+...+ +|+++.++..+..
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~---------------------~l~~~~~~---aDivi~a~G~~~~ 95 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA---------------------HLDEEVNK---GDILVVATGQPEM 95 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------SHHHHHTT---CSEEEECCCCTTC
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccc---------------------cHHHHHhh---ccchhhccccccc
Confidence 579999985 5999999999999999999986532 34444554 9999999987653
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
++ ...+.+|.+|||.+....
T Consensus 96 i~------~~~vk~g~iviDvgi~~~ 115 (170)
T d1a4ia1 96 VK------GEWIKPGAIVIDCGINYV 115 (170)
T ss_dssp BC------GGGSCTTCEEEECCCBC-
T ss_pred cc------cccccCCCeEeccCcccc
Confidence 32 246889999999988654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.70 E-value=0.015 Score=53.55 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=57.0
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
.||++| | .+-+|..+|+.|+++|++|.+++|++++++++.++....| .++..+ =+.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------------------~~~~~~~~Dvt~ 70 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------------------YESSGYAGDVSK 70 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------------------CCEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEccCCC
Confidence 577777 5 4789999999999999999999999998877665422110 122222 2344
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
.+.++++++++.....+=|++|...
T Consensus 71 ~~~v~~~~~~~~~~~g~iDilvnna 95 (251)
T d2c07a1 71 KEEISEVINKILTEHKNVDILVNNA 95 (251)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEECC
T ss_pred HHHHHHHHHHHHHhcCCceeeeecc
Confidence 4567777777777665667777653
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0049 Score=54.11 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.++|.|||.|..|..-|..|+++||+|++|++++.
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 46899999999999999999999999999999864
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.019 Score=52.86 Aligned_cols=81 Identities=10% Similarity=0.184 Sum_probs=56.7
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|+.+| | .+-+|.++|+.|+++|++|.+.||++++.+++.++... +..+..=+.+.+
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~---------------------~~~~~~Dvs~~~ 64 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG---------------------AVFILCDVTQED 64 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT---------------------EEEEECCTTSHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC---------------------CeEEEccCCCHH
Confidence 355555 5 58899999999999999999999999888777654311 112222234556
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++++++++.....+=|++|+...
T Consensus 65 ~v~~~~~~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 65 DVKTLVSETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEeccc
Confidence 677777777766655677777654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.58 E-value=0.028 Score=51.27 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=55.0
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|+.+| | .+-+|..+|+.|++.|++|.+.+|++++.+++.+.. + +..+..=+.+.+
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~------~----------------~~~~~~Dv~~~~ 62 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------G----------------AHPVVMDVADPA 62 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------T----------------CEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------C----------------CeEEEEecCCHH
Confidence 355555 5 577999999999999999999999998887766532 1 112222234445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++++++++.....+=|++|+...
T Consensus 63 ~v~~~~~~~~~~~g~iDilVnnAG 86 (242)
T d1ulsa_ 63 SVERGFAEALAHLGRLDGVVHYAG 86 (242)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHHHHHhcCCceEEEECCc
Confidence 677777777666555577777643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.57 E-value=0.0041 Score=57.98 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=32.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+.+|.|||.|..|..+|..|+++|++|.+++++++
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45899999999999999999999999999999875
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0067 Score=48.84 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=33.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
..||||+|.|..|+.|+....+-|++|.++|.+++.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 358999999999999999999999999999998764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.50 E-value=0.022 Score=52.59 Aligned_cols=83 Identities=12% Similarity=0.222 Sum_probs=55.7
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
-|+++| | .+-+|..+|+.|++.|++|.+.||++++++++.++....+ .++..+ =+.+
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-------------------~~~~~~~~Dv~~ 68 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-------------------FKVEASVCDLSS 68 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CEEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CCceEEEeeCCC
Confidence 356555 6 4779999999999999999999999998877765422110 222222 2344
Q ss_pred CchHHHHHHHHhhccC-CCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMS-PGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~-~g~iiId~st 108 (505)
.+.++++++++...+. +=|++|+...
T Consensus 69 ~~~v~~~~~~~~~~~~~~idilvnnAG 95 (259)
T d2ae2a_ 69 RSERQELMNTVANHFHGKLNILVNNAG 95 (259)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCceEEEECCc
Confidence 4567777777766554 4577777644
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.46 E-value=0.025 Score=52.17 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=52.4
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHH
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+-|.| .+-+|..+|+.|++.|++|.+.||++++.+++.++... . +..+..=+.+.+.++
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~~v~ 67 (254)
T d1hdca_ 8 VIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGD-----------------A---ARYQHLDVTIEEDWQ 67 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGG-----------------G---EEEEECCTTCHHHHH
T ss_pred EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------------c---eEEEEcccCCHHHHH
Confidence 44456 46799999999999999999999999988776654211 0 112222234445566
Q ss_pred HHHHHHhhccCCCCEEEeCCC
Q 010652 88 QTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iiId~st 108 (505)
++++.+.....+=|++|+...
T Consensus 68 ~~~~~~~~~~g~iDilVnnAg 88 (254)
T d1hdca_ 68 RVVAYAREEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHcCCccEEEecCc
Confidence 666666655545566666543
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.042 Score=44.13 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=87.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..||-+-|. |.-|+--+..+.+.|-+|. +.. |.+ .+... .++..+++.+|+++.. ++|.-++.||+.
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVt--Pgk------gG~~~--~giPVf~sV~eAv~~~-~~~~SvIfVPp~ 74 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVT--PGK------GGTTH--LGLPVFNTVREAVAAT-GATASVIYVPAP 74 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEEC--TTC------TTEEE--TTEEEESSHHHHHHHH-CCCEEEECCCGG
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEc--cCC------CCccc--CCCchhhHHHHHHHHh-CCCeEEEeccHH
Confidence 468999997 9999999999999998865 444 332 11111 2588899999999873 589999999998
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.+.+.+++.+...+ ..+++-+-...+.|+.++.+.+++++..+++
T Consensus 75 ~a~dA~~EAi~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~liG 119 (119)
T d2nu7a1 75 FCKDSILEAIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMIG 119 (119)
T ss_dssp GHHHHHHHHHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEeC
Confidence 87788888876655 3677777788889999998888888887764
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.41 E-value=0.0066 Score=52.84 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=32.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~ 40 (505)
..||.|||.|..|...|..|+++|+ +|+++++++.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 4689999999999999999999999 5999998864
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.40 E-value=0.0022 Score=53.05 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=50.9
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVA-EKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-~~G~~V~v-~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-+|.|+|+|.+|..++..+. +.||++.+ +|-++++...... | .++...+.+++++.. ..++.++++|. .
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~-----G-i~V~~~~~l~~~~~~--~i~iai~~i~~-~ 74 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR-----G-GVIEHVDLLPQRVPG--RIEIALLTVPR-E 74 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET-----T-EEEEEGGGHHHHSTT--TCCEEEECSCH-H
T ss_pred ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEEC-----C-EEEecHHHHHHHHhh--cccEEEEeCCH-H
Confidence 47999999999999998764 45788765 4888875332211 0 123333444555443 46777888876 4
Q ss_pred hHHHHHHHHhh
Q 010652 85 PVDQTIAALSE 95 (505)
Q Consensus 85 ~v~~vl~~l~~ 95 (505)
..+++++.+..
T Consensus 75 ~~~~I~d~l~~ 85 (126)
T d2dt5a2 75 AAQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.39 E-value=0.026 Score=52.11 Aligned_cols=84 Identities=13% Similarity=0.216 Sum_probs=56.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .+-+|.++|..|+++|++|.+.+|++++++++.++....+ .. ...+..=+.+.+.+
T Consensus 8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--------------~~---~~~~~~D~s~~~~~ 70 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------------LN---VEGSVCDLLSRTER 70 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CC---EEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CC---ceEEEeecCCHHHH
Confidence 455666 5889999999999999999999999988777665432110 00 12223334455567
Q ss_pred HHHHHHHhhcc-CCCCEEEeCCC
Q 010652 87 DQTIAALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 87 ~~vl~~l~~~l-~~g~iiId~st 108 (505)
+++++++.... .+-+++|.+..
T Consensus 71 ~~~~~~~~~~~~g~idilinnag 93 (258)
T d1ae1a_ 71 DKLMQTVAHVFDGKLNILVNNAG 93 (258)
T ss_dssp HHHHHHHHHHTTSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCcEEEecccc
Confidence 77777777665 35567776543
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=95.39 E-value=0.03 Score=52.09 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=56.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| | .+-+|..+|+.|++.|++|.+.||++++++++.++.. .. +..+..-+.+.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~-----------------~~---~~~~~~Dv~~~~~ 65 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG-----------------DN---VLGIVGDVRSLED 65 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----------------CC---eeEEecccccHHH
Confidence 45555 6 5899999999999999999999999988877654321 11 2223333444456
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
+++.++.+.....+=+++|+...
T Consensus 66 ~~~~~~~~~~~~g~idilvnnAG 88 (276)
T d1bdba_ 66 QKQAASRCVARFGKIDTLIPNAG 88 (276)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHHHHHhCCccccccccc
Confidence 77777777776666677777543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.042 Score=50.52 Aligned_cols=85 Identities=16% Similarity=0.249 Sum_probs=57.2
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
-|+.+| | .+-+|..+|+.|++.|++|++.+|++++++++.++....+ . ..+++.+ =+.+
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------------~---~~~~~~~~~Dls~ 72 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--------------Y---PGTLIPYRCDLSN 72 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------C---SSEEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------C---CceEEEEEccCCC
Confidence 466666 5 6899999999999999999999999998888765432110 0 0223322 2345
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.++.+++.+......=|++|++..
T Consensus 73 ~~~v~~~v~~~~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 73 EEDILSMFSAIRSQHSGVDICINNAG 98 (257)
T ss_dssp HHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEeccc
Confidence 55677777777766555567777653
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.032 Score=52.56 Aligned_cols=88 Identities=11% Similarity=0.296 Sum_probs=58.2
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--CC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~ 82 (505)
-|+++| | .+-+|.++|+.|++.|++|.+.+|++++.++..++.... .......+++.+.+ .+
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~--------------~~~~~~~~~~~~~~Dvs~ 77 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQAN--------------LPPTKQARVIPIQCNIRN 77 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------------SCTTCCCCEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--------------hccccCceEEEEeccCCC
Confidence 456666 5 578999999999999999999999998877665432110 00001134444433 44
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.++++++.+.....+=+++|+...
T Consensus 78 ~~~v~~~~~~~~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 78 EEEVNNLVKSTLDTFGKINFLVNNGG 103 (297)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeecc
Confidence 45677777777776666678887644
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.36 E-value=0.025 Score=52.21 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=56.7
Q ss_pred cEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCCC
Q 010652 8 RIGLA-GL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgiI-Gl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| |. +-+|..+|+.|+++|++|.+.||++++++++.+..... ..++..+. +.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~-------------------g~~~~~~~~Dv~~~ 66 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-------------------GVEARSYVCDVTSE 66 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-------------------TSCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------------CCcEEEEEccCCCH
Confidence 55555 64 77999999999999999999999998887766542111 02333222 3455
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.++++++.+......=|++|+...
T Consensus 67 ~~v~~~~~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 67 EAVIGTVDSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCeehhhhc
Confidence 6677888777776666677887543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.32 E-value=0.022 Score=52.46 Aligned_cols=81 Identities=11% Similarity=0.195 Sum_probs=56.8
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
-|+.+| | .+-+|.++|+.|++.|++|.+.||++++.+++.++.. .+.+++ =+.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~Dv~~ 63 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG----------------------ERSMFVRHDVSS 63 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC----------------------TTEEEECCCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC----------------------CCeEEEEeecCC
Confidence 466666 5 5779999999999999999999999988877765421 112221 1234
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
...++++++.+.....+=|++|+....
T Consensus 64 ~~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 64 EADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp HHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEecccc
Confidence 456777777777666666788876543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.31 E-value=0.01 Score=51.38 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=48.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeee--CCHHHHHhhc--CCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSI--QRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~--~s~~e~v~~l--~~advIil~vp 81 (505)
.+|.|+|+|.+|...+..+...|.++ .+.|+++++.+.+.+.+... +.-. .+..+.+.++ .+.|+||.|+.
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~----~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH----VINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE----EEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE----EEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 46999999999999999998888864 57799999988777655421 1111 1233333222 13577777766
Q ss_pred CC
Q 010652 82 AG 83 (505)
Q Consensus 82 ~~ 83 (505)
..
T Consensus 106 ~~ 107 (174)
T d1f8fa2 106 SP 107 (174)
T ss_dssp CH
T ss_pred cH
Confidence 54
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.30 E-value=0.028 Score=51.53 Aligned_cols=85 Identities=9% Similarity=0.122 Sum_probs=58.1
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|+.+| | .+-+|..+|+.|++.|++|.+.+|++++.+++.+..... .. +..+..=+.+.+
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~---------------~~---~~~~~~Dv~~~~ 67 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---------------DQ---IQFFQHDSSDED 67 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---------------TT---EEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC---------------Cc---EEEEEccCCCHH
Confidence 466766 5 688999999999999999999999998887766542110 00 122222244555
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++.+...+.+=|++|+....
T Consensus 68 ~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 68 GWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCceEEEecccc
Confidence 6777777777766666788876543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.27 E-value=0.097 Score=43.22 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=60.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~-~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
||+|+| .|.||+.++..+.+ .++++. .+|+.. ++..... ..+|+||=...+ +
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------------------~~~~~~~--~~~DvvIDFS~p-~ 55 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHP-D 55 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------------------CTHHHHT--TTCSEEEECCCT-T
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------------------chhhhcc--ccCCEEEEcccH-H
Confidence 699999 59999999888665 567755 456432 1112221 138999887655 3
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHH-HHHH-HHcCCeEEcCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR-IHEA-SQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~-~~~l-~~~gi~~v~~p 132 (505)
.+.+.++.... .|.-+|-++|+......+. .+.+ +++.+..+-+|
T Consensus 56 ~~~~~~~~~~~---~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~ap 102 (135)
T d1yl7a1 56 VVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 102 (135)
T ss_dssp THHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHHHHh---cCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcC
Confidence 56666655443 5677888889886554443 3322 34566555554
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.25 E-value=0.049 Score=43.85 Aligned_cols=113 Identities=19% Similarity=0.131 Sum_probs=86.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..||-+-|. |..|+--+..+.+.|-+|..- .+|.+- +... .++..+++.+|++++. .+|.-++.||+..
T Consensus 7 ~trVivQGiTG~~G~~ht~~m~~yGT~iVaG-VtPgkg------G~~~--~giPVf~tV~eAv~~~-~~d~SvIfVPp~~ 76 (121)
T d1oi7a1 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAG-VTPGKG------GMEV--LGVPVYDTVKEAVAHH-EVDASIIFVPAPA 76 (121)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCT------TCEE--TTEEEESSHHHHHHHS-CCSEEEECCCHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEee-eecCCC------CcEE--ECCchHhhHHHHHHhc-CCeEEEEeeCHHH
Confidence 458999996 999999999999999886532 233321 1110 1588899999999874 6999999999987
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+.+.+++.+...+ ..+++-+-.....|+.++.+.+++++..+++
T Consensus 77 a~dAi~EAi~agI--~liv~ITEgVPv~Dm~~i~~~~~~~~~~liG 120 (121)
T d1oi7a1 77 AADAALEAAHAGI--PLIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (121)
T ss_dssp HHHHHHHHHHTTC--SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCC--cEEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence 7777777776654 3577777788888999988888888877664
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.20 E-value=0.41 Score=43.04 Aligned_cols=176 Identities=15% Similarity=0.134 Sum_probs=103.9
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEe-----------CChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYN-----------RTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~~G~~V~v~d-----------r~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~ 72 (505)
..+|.|=|+|.+|..+|+.|. +.|..|+..+ .+.+.+....+.... .+..+.. ..+.+++... +
T Consensus 31 g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~ 107 (234)
T d1b26a1 31 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLEL--D 107 (234)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCE-EECHHHHHTS--C
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccce-eecccccccc--c
Confidence 357999999999999999997 5698877553 233344444332211 0000122 2356666663 4
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC--CCCChhhhhcCCcccCCC
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG--VSGGEEGARHGPSLMPGG 150 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p--vsgg~~~a~~G~~i~~gg 150 (505)
||+++-|--.+... ++-.+.+. -++|+...|... +.+..+.|.++|+.|+.-- -+||...
T Consensus 108 ~DI~~PcA~~~~I~----~~~a~~l~-~~~I~e~AN~p~--t~~a~~~L~~rgI~~~PD~~aNaGGVi~----------- 169 (234)
T d1b26a1 108 VDILVPAALEGAIH----AGNAERIK-AKAVVEGANGPT--TPEADEILSRRGILVVPDILANAGGVTV----------- 169 (234)
T ss_dssp CSEEEECSCTTCBC----HHHHTTCC-CSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTTHHHHH-----------
T ss_pred cceeecchhccccc----HHHHHHhh-hceEeecCCCCC--CHHHHHHHHHCCeEEechHHhcCCCeee-----------
Confidence 99998776554322 33445553 368888888653 3455678899999888532 2222210
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 151 ~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
..+ +..+... ...+ -..-|.+.++..+...+.+.+..+++.+ +++.+...++
T Consensus 170 --s~~----E~~qn~~-------~~~w--------~~e~V~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 221 (234)
T d1b26a1 170 --SYF----EWVQDLQ-------SFFW--------DLDQVRNALEKMMKGAFNDVMKVKEKYN-VDMRTAAYIL 221 (234)
T ss_dssp --HHH----HHHHHHT-------TCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred --eeh----hcccccc-------hhcc--------cHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHH
Confidence 111 2222222 0111 1134666777777777888999999998 9988776554
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.029 Score=51.66 Aligned_cols=83 Identities=11% Similarity=0.219 Sum_probs=56.5
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCC
Q 010652 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgiI--GlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|+.+| |.+-+|.++|+.|++.|++|.+.+|++++.+++.++....| .+++.+. +.+
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------------------~~~~~~~~Dvs~ 71 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------------------GQAFACRCDITS 71 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------------CcEEEEEccCCC
Confidence 367777 56889999999999999999999999998877665421110 2233222 234
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.++++++.+...+.+=|++|....
T Consensus 72 ~~~~~~~~~~~~~~~g~iDilvnnAG 97 (255)
T d1fmca_ 72 EQELSALADFAISKLGKVDILVNNAG 97 (255)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCEeeeCCc
Confidence 45666777777666555577777644
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.15 E-value=0.033 Score=51.23 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=54.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| | .+-+|..+|+.|++.|++|.+.||+.++++++.++... + +..+..=+.+.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~----~----------------~~~~~~Dvt~~~~ 65 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGP----A----------------ACAIALDVTDQAS 65 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT----T----------------EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC----c----------------eEEEEeeCCCHHH
Confidence 55555 5 58899999999999999999999999988777654211 0 1112222344456
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++++++++.....+=|++|+...
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg 88 (256)
T d1k2wa_ 66 IDRCVAELLDRWGSIDILVNNAA 88 (256)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCccEEEeecc
Confidence 77777777666555577777544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.09 E-value=0.034 Score=51.04 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=55.7
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
-|+.+| | .+-+|..+|+.|++.|++|.+.+|+.++.++..++.... . . .+++.+ =+.+
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--------------~-g---~~~~~~~~Dv~~ 66 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK--------------Y-G---VETMAFRCDVSN 66 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------H-C---CCEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--------------h-C---CcEEEEEccCCC
Confidence 355555 5 577999999999999999999999998876655431110 0 0 233322 2344
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.++.+++++...+.+=|++|+...
T Consensus 67 ~~~v~~~~~~~~~~~g~iDiLVnnAG 92 (251)
T d1vl8a_ 67 YEEVKKLLEAVKEKFGKLDTVVNAAG 92 (251)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 45677777777766655578887644
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.0062 Score=45.74 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=31.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
++|||+|.|..|+.|+..-.+-|++|.++|.+++
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5799999999999999999999999999998754
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.08 E-value=0.011 Score=51.13 Aligned_cols=92 Identities=10% Similarity=0.040 Sum_probs=62.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|.|. |.+|..........|.+|++.++++++.+.+.+.+... +.-..+..+.....+++|+||-++. ..
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D~v~d~~G--~~ 102 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEE----AATYAEVPERAKAWGGLDLVLEVRG--KE 102 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEEEEEECSC--TT
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccce----eeehhhhhhhhhccccccccccccc--hh
Confidence 36888895 99999999888889999999999999988887766532 2222333333444466899998764 23
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
+ +.....+.++-.++..+.
T Consensus 103 ~----~~~~~~l~~~G~~v~~G~ 121 (171)
T d1iz0a2 103 V----EESLGLLAHGGRLVYIGA 121 (171)
T ss_dssp H----HHHHTTEEEEEEEEEC--
T ss_pred H----HHHHHHHhcCCcEEEEeC
Confidence 3 334455666666666543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.97 E-value=0.057 Score=46.59 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=28.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEE-EEeCChhH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPIS-VYNRTTSK 41 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~-v~dr~~~~ 41 (505)
|.+|||-|.|.+|+.+.+.+.+++ .+|. +.|+++..
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~ 38 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDF 38 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHH
Confidence 358999999999999999988775 5655 45776543
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.96 E-value=0.01 Score=52.66 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~ 39 (505)
+||.|||.|.-|.+.|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 489999999999999999999996 799999875
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.95 E-value=0.0089 Score=55.67 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..||.|||.|..|...|..|+++|++|+++++++
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3589999999999999999999999999999875
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.93 E-value=0.037 Score=51.65 Aligned_cols=83 Identities=12% Similarity=0.184 Sum_probs=54.0
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCC
Q 010652 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 8 ~IgiI--GlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
|+.+| |.|-+|.++|+.|+++|++|++.||+.++.++..++.... .. .++.. .-+.+.
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~--------------~g----~~~~~~~~D~~~~ 87 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ--------------TG----NKVHAIQCDVRDP 87 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------HS----SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh--------------cC----CceEEEEecccCh
Confidence 67777 6799999999999999999999999998877665432110 00 12222 223333
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.++.+++.+......=+++|++..
T Consensus 88 ~~v~~~~~~~~~~~g~iDilvnnAg 112 (294)
T d1w6ua_ 88 DMVQNTVSELIKVAGHPNIVINNAA 112 (294)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred HHHHHHhhhhhhhccccchhhhhhh
Confidence 4555556666555555567776644
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.91 E-value=0.055 Score=49.75 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=56.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCCC
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.|| | .+-+|.++|+.|++.|++|.+.||+++++++..++.... .. ..+++.+. +.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~--------------~~---~~~~~~~~~Dvt~~ 67 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET--------------AP---DAEVLTTVADVSDE 67 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------CT---TCCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--------------CC---CCeEEEEeccCCCH
Confidence 55555 5 477999999999999999999999999877665432110 00 12333332 3445
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.++.+++++...+.+=|++|+...
T Consensus 68 ~~v~~~~~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 68 AQVEAYVTATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCc
Confidence 5677777777776666678887654
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.90 E-value=0.042 Score=50.66 Aligned_cols=88 Identities=13% Similarity=0.248 Sum_probs=60.0
Q ss_pred CCcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecC
Q 010652 6 LSRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVK 81 (505)
Q Consensus 6 ~~~IgiI--GlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp 81 (505)
+-|+++| |.+-+|.++|+.|++.|++|.+.+|++++.+++.++....+ . + ..++..+ =+.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~---~----~---------~~~~~~~~~Dvt 67 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG---V----S---------EQNVNSVVADVT 67 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---C----C---------GGGEEEEECCTT
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---C----C---------cCceEEEEccCC
Confidence 3478777 56899999999999999999999999998877765422110 0 0 0123222 234
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+...++++++.+.....+=|++|+....
T Consensus 68 ~~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 68 TDAGQDEILSTTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred CHHHHHHHHHHHHHHhCCCCEeeccccc
Confidence 5556777777777766666888886554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=94.87 E-value=0.069 Score=49.04 Aligned_cols=118 Identities=12% Similarity=-0.014 Sum_probs=78.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|-=+|+|. | .++..+++.|.+|+++|.++..++.+.+.....+ .+. ....+..+.... .+.|+|+..+.. ..
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~-~~~~~~~~d~~~~~~~-~~fD~V~ani~~-~~ 196 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNG-VRPRFLEGSLEAALPF-GPFDLLVANLYA-EL 196 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTT-CCCEEEESCHHHHGGG-CCEEEEEEECCH-HH
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcC-CceeEEeccccccccc-cccchhhhcccc-cc
Confidence 4688899986 4 3566778889999999999998877765432221 122 234566655432 347988876655 35
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
..++++.+...|.||-.++- |.....+...+.+.+.+.|...+.
T Consensus 197 l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 HAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 67777888888888876654 223344566677777788876654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.84 E-value=0.076 Score=48.77 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=54.8
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|+.+| | .+-+|..+|+.|++.|++|.+.+|+++++++..++.... . .++..+. +.+
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------~---~~~~~~~~Dv~~ 68 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK----------------G---FQVTGSVCDASL 68 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CceEEEeccCCC
Confidence 456666 5 578999999999999999999999999887766542211 0 1222222 344
Q ss_pred CchHHHHHHHHhhcc-CCCCEEEeCCCC
Q 010652 83 GSPVDQTIAALSEHM-SPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l-~~g~iiId~st~ 109 (505)
.+.++.+++.+...+ .+=|++|+....
T Consensus 69 ~~~v~~~~~~~~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 69 RPEREKLMQTVSSMFGGKLDILINNLGA 96 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCcccccccccc
Confidence 445666666666554 234677776443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.84 E-value=0.047 Score=50.41 Aligned_cols=84 Identities=10% Similarity=0.058 Sum_probs=55.6
Q ss_pred CCcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.-|+.+| | .+-+|..+|+.|++.|++|.+.||++++.+++.++....+ + ...+-.=+.+.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~----------------~~~~~~Dv~~~ 66 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD--V----------------ISFVHCDVTKD 66 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT--T----------------EEEEECCTTCH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC--c----------------eEEEEccCCCH
Confidence 3466666 5 5789999999999999999999999998887766432110 0 11111123444
Q ss_pred chHHHHHHHHhhccCCCCEEEeCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
+.++++++.+.....+=|++|...
T Consensus 67 ~~v~~~~~~~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 67 EDVRNLVDTTIAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCcceecccc
Confidence 566777776666555556777654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.83 E-value=0.079 Score=45.64 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=39.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR 51 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~ 51 (505)
..|.|+|+|-+|...+..+...|. +|++.|+++++.+...+.++.
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 359999999999999999999995 799999999999988877653
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.80 E-value=0.0098 Score=54.22 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+||.|||.|.-|..-|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.79 E-value=0.02 Score=52.79 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cC
Q 010652 6 LSRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 6 ~~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp 81 (505)
+-|+.+| | .+-+|..+|+.|+++|++|.+.+|+.++.++..++.... . . .+++.+. +.
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~--------------~-g---~~~~~~~~Dv~ 69 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE--------------F-G---VKTKAYQCDVS 69 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH--------------H-T---CCEEEEECCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--------------h-C---CceEEEEccCC
Confidence 3466666 5 577999999999999999999999988776655432110 0 0 2232222 34
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+.++.+++++.....+=|++|+...
T Consensus 70 ~~~~v~~~~~~~~~~~g~iDilVnnAg 96 (260)
T d1h5qa_ 70 NTDIVTKTIQQIDADLGPISGLIANAG 96 (260)
T ss_dssp CHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCcEeccccc
Confidence 445667777777766655567776543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.79 E-value=0.02 Score=50.53 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=48.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEE--EeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISV--YNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v--~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~v 80 (505)
|++|-|.| .|.+|+.++..|+++|++|.+ ..|++++...+.... .+.. ..+.+.+.+.++++|.|+.+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~d~vi~~a 76 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEA------DVFIGDITDADSINPAFQGIDALVILT 76 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCT------TEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCc------EEEEeeeccccccccccccceeeEEEE
Confidence 46899998 699999999999999987554 568887755443211 1111 234555555555689888776
Q ss_pred CC
Q 010652 81 KA 82 (505)
Q Consensus 81 p~ 82 (505)
..
T Consensus 77 ~~ 78 (252)
T d2q46a1 77 SA 78 (252)
T ss_dssp CC
T ss_pred ee
Confidence 43
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.75 E-value=0.012 Score=54.08 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=30.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+|.|||.|.+|.+.|..|+++|++|+++|+++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999874
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.75 E-value=0.018 Score=49.00 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=38.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|.+|.+.++++++.+.+.+.+.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga 72 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 72 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc
Confidence 47999999999999988889999999999999999887766543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.74 E-value=0.13 Score=44.22 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=37.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|. +|++.|+++++.+...+.++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga 74 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA 74 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC
Confidence 469999999999999999999998 58889999999877766554
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.71 E-value=0.04 Score=50.81 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=48.1
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhH-----HHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCc
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSK-----VDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPR 74 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~-----~~~~~~~~~~~g~~~i~~----~~s~~e~v~~l~~ad 74 (505)
.++||.|+| .|.+|..++..|.++||+|++.+|++.. .+.+..... . ++.. ..+.+.+.+.+..++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~---~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ-L---GAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT-T---TCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhcc-C---CcEEEEeecccchhhhhhccCcc
Confidence 457899999 5999999999999999999999987532 222111110 0 1111 134555555555577
Q ss_pred EEEEecCC
Q 010652 75 SVIILVKA 82 (505)
Q Consensus 75 vIil~vp~ 82 (505)
.++.+++.
T Consensus 78 ~~~~~~~~ 85 (312)
T d1qyda_ 78 VVISALAG 85 (312)
T ss_dssp EEEECCCC
T ss_pred hhhhhhhh
Confidence 77777654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.68 E-value=0.037 Score=50.35 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=52.8
Q ss_pred cEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCC
Q 010652 8 RIGLA-GL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (505)
Q Consensus 8 ~IgiI-Gl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~ 83 (505)
|+.+| |. +-+|..+|+.|+++|++|.+.+|+.+++++..++.. .+++.+ =+.+.
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dls~~ 63 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE----------------------AEAIAVVADVSDP 63 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC----------------------SSEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----------------------CceEEEEecCCCH
Confidence 44555 64 679999999999999999999999988776665321 112211 23344
Q ss_pred chHHHHHHHHhhccCCCCEEEeCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
+.+++.++.+...+.+=|++|...
T Consensus 64 ~~i~~~~~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 64 KAVEAVFAEALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred HHHHHHHHHHHHHhCCccEecccc
Confidence 566666777766665667777653
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=94.67 E-value=0.031 Score=51.11 Aligned_cols=112 Identities=8% Similarity=0.062 Sum_probs=70.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEe-CC----------hhHHHHHHHh--------h-cccCCCCeeeeCCHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYN-RT----------TSKVDETLDR--------A-HREGQLPLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~d-r~----------~~~~~~~~~~--------~-~~~g~~~i~~~~s~~e~ 66 (505)
.+|.|=|.|.+|..+|+.|.+.|.+|+..+ .+ .+.+.+..+. . ... +.....+++++
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i 108 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKD---NAEFVKNPDAI 108 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTS---CCCCCSSTTGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhcc---CceEeeCcchh
Confidence 579999999999999999999999987553 32 1222211110 0 000 12333445555
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... +||+++-|-..+.... +..+.+ +-++|+...|... +.+..+.+.++|+.|+.
T Consensus 109 ~~~--~~DIliPcA~~~~I~~----~~a~~i-~ak~IvegAN~p~--t~~a~~~L~~rgI~~~P 163 (242)
T d1v9la1 109 FKL--DVDIFVPAAIENVIRG----DNAGLV-KARLVVEGANGPT--TPEAERILYERGVVVVP 163 (242)
T ss_dssp GGC--CCSEEEECSCSSCBCT----TTTTTC-CCSEEECCSSSCB--CHHHHHHHHTTTCEEEC
T ss_pred ccc--cccEEeecchhccccH----HHHHhc-ccCEEEecCCCCC--ChhHHHHHHhCCeEEeC
Confidence 552 4999998876653222 223444 3478888888753 44556788999998874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.65 E-value=0.024 Score=48.50 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCC---HH-HHHhhc--CCCcEEEE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYT---PR-DFVLSI--QRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s---~~-e~v~~l--~~advIil 78 (505)
.+|.|+|+ |.+|...+..+...|. +|++.++++++.+.+.+.+.. .....+ +. +..+.. +..|+|+.
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-----~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-----YVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-----EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-----eeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 36999995 9999999988888885 899999999998887766542 122222 22 222211 23677777
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
|+.... .++.....+.++-.++..+
T Consensus 104 ~~g~~~----~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 104 LNNSEK----TLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp SCCCHH----HHTTGGGGEEEEEEEEECC
T ss_pred ccccch----HHHhhhhhcccCCEEEEec
Confidence 775532 2334445555555555443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.64 E-value=0.013 Score=55.90 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
++||.|||+|.-|...|..|+++|++|.+++++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4689999999999999999999999999999875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.58 E-value=0.051 Score=46.80 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=38.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|. +|++.|++++|.+...+.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa 73 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA 73 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC
Confidence 369999999999999999999996 68899999999988877664
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.56 E-value=0.056 Score=50.02 Aligned_cols=86 Identities=16% Similarity=0.300 Sum_probs=57.3
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|+.+| | .+-+|.++|+.|+++|++|.+.+|++++++++.++....+ . .. .++..+. +.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~---~----------~~---~~~~~~~~Dvs~ 68 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG---V----------SE---KQVNSVVADVTT 68 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT---C----------CG---GGEEEEECCTTS
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---C----------CC---CceEEEEccCCC
Confidence 356666 5 5889999999999999999999999998887765432110 0 00 1232222 344
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.++.+++.+.....+=|++|+...
T Consensus 69 ~~~v~~~~~~~~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 69 EDGQDQIINSTLKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCceEEEeCCc
Confidence 45677777777766655677777643
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.086 Score=48.14 Aligned_cols=86 Identities=14% Similarity=0.238 Sum_probs=58.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCCC
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~ 83 (505)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++.++..++.... ....++..+ =+.+.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~Dv~~~ 66 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ-----------------FEPQKTLFIQCDVADQ 66 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT-----------------SCGGGEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-----------------cCCCcEEEEEeecCCH
Confidence 56666 5 577999999999999999999999999887766542110 000123222 24455
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.++++++.+...+.+=|++|+.....
T Consensus 67 ~~v~~~~~~~~~~~G~iDilVnnAg~~ 93 (254)
T d2gdza1 67 QQLRDTFRKVVDHFGRLDILVNNAGVN 93 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCcCeeccccccc
Confidence 567777777776665557888766544
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.39 E-value=0.0027 Score=57.13 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPIS 33 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~ 33 (505)
|||.|||.|.+|.+.|..|+++|++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCce
Confidence 689999999999999999999998643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.066 Score=45.79 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=37.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|. |.+|..........|.+|++.++++++.+.+.+.+.
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga 74 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA 74 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCc
Confidence 36999995 999999998888999999999999988887776554
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.31 E-value=0.052 Score=46.42 Aligned_cols=94 Identities=7% Similarity=0.026 Sum_probs=57.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCC-HHHHHhhc--CCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYT-PRDFVLSI--QRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s-~~e~v~~l--~~advIil~vp~ 82 (505)
..|.|+|+|.+|...+..+...|. .|.+.|+++++.+.+.+.+... -+...++ .++..+.. ..+|+||.++..
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~---~i~~~~~~~~~~~~~~~~~g~d~vid~~g~ 110 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH---VVDARRDPVKQVMELTRGRGVNVAMDFVGS 110 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE---EEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce---eecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence 369999999999998888877775 6788899999988777655421 0111112 22222211 236778877765
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
.. .++.....+.++-.++-.+
T Consensus 111 ~~----~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 111 QA----TVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HH----HHHHGGGGEEEEEEEEECC
T ss_pred ch----HHHHHHHHHhCCCEEEEEe
Confidence 33 2344444555544444443
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.30 E-value=0.024 Score=45.47 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
..+|.|||.|.+|.-+|..|++.|.+|++++|.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 35899999999999999999999999999988764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.29 E-value=0.063 Score=48.81 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=35.0
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~ 49 (505)
++-|.|. +-+|.++|+.|++.|++|.+.+|++++++++.++.
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 49 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC 49 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc
Confidence 3444565 77999999999999999999999999888877653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.25 E-value=0.02 Score=55.03 Aligned_cols=71 Identities=8% Similarity=0.042 Sum_probs=46.0
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEec
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~v 80 (505)
+.|||.|.| .|.+|+.|+..|.++||+|+++|+....-. ...... .++.. ..+.+++.+.++++|.|+-+.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~--~~~~~~---~~~~~~D~~~~~~~~~~~~~~d~Vih~a 87 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM--TEDMFC---DEFHLVDLRVMENCLKVTEGVDHVFNLA 87 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS--CGGGTC---SEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch--hhhccc---CcEEEeechhHHHHHHHhhcCCeEeecc
Confidence 467999998 699999999999999999999987543210 000000 01111 124555555555688877665
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.23 E-value=0.064 Score=48.68 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=56.8
Q ss_pred cEEEE-cc-cHHHHHHHHHHHhCCCc-------EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE-
Q 010652 8 RIGLA-GL-AVMGQNLALNVAEKGFP-------ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI- 77 (505)
Q Consensus 8 ~IgiI-Gl-G~mG~~lA~~La~~G~~-------V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi- 77 (505)
+|.+| |. +-+|..+|+.|+++|++ |.+++|++++++++.++....| .++..
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g-------------------~~~~~~ 62 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG-------------------ALTDTI 62 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-------------------CEEEEE
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC-------------------CcEEEE
Confidence 55555 65 77999999999999998 8999999998877765422110 22222
Q ss_pred -EecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 78 -ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 78 -l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.=+.+.++++++++.+.....+=|++|+....
T Consensus 63 ~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 63 TADISDMADVRRLTTHIVERYGHIDCLVNNAGV 95 (240)
T ss_dssp ECCTTSHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred EecCCCHHHHHHHHHHHHHHcCCcceeeccccc
Confidence 23455566777777777766666788876543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.19 E-value=0.049 Score=50.51 Aligned_cols=86 Identities=17% Similarity=0.282 Sum_probs=54.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.++....+ . .. .. ...+..=+.+...
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~----~~----~~---~~~~~~Dv~~~~~ 70 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---V----PA----EK---INAVVADVTEASG 70 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---C----CG----GG---EEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---C----CC----cc---eEEEEeeCCCHHH
Confidence 55555 5 5789999999999999999999999998877665432110 0 00 00 1122222344456
Q ss_pred HHHHHHHHhhccCCCCEEEeCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~s 107 (505)
++++++.+.....+=|++|+..
T Consensus 71 v~~~~~~~~~~~G~iDilVnnA 92 (274)
T d1xhla_ 71 QDDIINTTLAKFGKIDILVNNA 92 (274)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCceEEEeec
Confidence 6777777666555556777654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.16 E-value=0.049 Score=51.00 Aligned_cols=114 Identities=8% Similarity=0.038 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEe-----------CChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYN-----------RTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~d-----------r~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
++|.|=|.|++|...|..|.+.|.+|+..+ .+.+.+.+..........+.- ...+..++... +||+
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~DI 113 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPK-AKIYEGSILEV--DCDI 113 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTT-SCBCCSCGGGC--CCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccc-cccCCcccccC--CccE
Confidence 579999999999999999999999987653 344555554443211000000 01122334432 4999
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
++-|-..+.... +-++.+ .-++|+...|.. .|.+..+.|.++|+.++.
T Consensus 114 liPaA~~~~I~~----~~a~~l-~ak~I~EgAN~P--~t~eA~~~L~~~gI~viP 161 (293)
T d1hwxa1 114 LIPAASEKQLTK----SNAPRV-KAKIIAEGANGP--TTPQADKIFLERNIMVIP 161 (293)
T ss_dssp EEECSSSSCBCT----TTGGGC-CCSEEECCSSSC--BCHHHHHHHHHTTCEEEC
T ss_pred EeeccccccccH----HHHHHH-hhCEEeccCCCC--CCcchHHHHHHCCCEEeC
Confidence 998865543222 233444 346888888875 344556788999998875
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.13 E-value=0.017 Score=49.03 Aligned_cols=91 Identities=12% Similarity=0.188 Sum_probs=52.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~---V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
||||||+ |..|.-|.+.|.++.+. +.....+.. ..+....... ........++... +.|+++++.|.+
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s-~G~~~~~~~~----~~~~~~~~~~~~~---~~d~~f~~~~~~ 74 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-AGKSLKFKDQ----DITIEETTETAFE---GVDIALFSAGSS 74 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG-TTCEEEETTE----EEEEEECCTTTTT---TCSEEEECSCHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc-ccccccccCC----cccccccchhhhh---hhhhhhhccCcc
Confidence 7999997 99999999999998763 333332211 1000000000 1122222222223 389999999885
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.. ...... ...+|..|||.|+.+
T Consensus 75 ~s-~~~~~~---~~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 75 TS-AKYAPY---AVKAGVVVVDNTSYF 97 (154)
T ss_dssp HH-HHHHHH---HHHTTCEEEECSSTT
T ss_pred ch-hhHHhh---hccccceehhcChhh
Confidence 33 333232 344789999999876
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.06 E-value=0.12 Score=46.72 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|.+|+.+|.+|++.|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+..++...
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~-np~~~i~~~~~~~ 109 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI-NPHIAITPVNALL 109 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh-hcccchhhhhhhh
Confidence 589999999999999999999998 68899866422222221100 00000000111122222211 2677777776642
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.-. .... .+...++++|++.. +.....+.+...+.++.|+...+.+
T Consensus 110 ~~~-~~~~---~~~~~divid~~d~-~~~~~~in~~~~~~~ip~i~g~~~~ 155 (247)
T d1jw9b_ 110 DDA-ELAA---LIAEHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAIR 155 (247)
T ss_dssp CHH-HHHH---HHHTSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred hhc-cccc---cccccceeeeccch-hhhhhhHHHHHHHhCCCcccccccc
Confidence 222 2222 23466899998765 3333344555566788888765544
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.05 E-value=0.019 Score=52.20 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~ 40 (505)
++|.|||.|.-|..+|..|+++|. +|.+++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 589999999999999999999995 8999999864
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=93.95 E-value=0.1 Score=47.60 Aligned_cols=78 Identities=9% Similarity=0.098 Sum_probs=51.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| | .+-+|..+|+.|++.|++|.+.||++++.+. .+... ...+-+=+.+.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~-~~~~~----------------------~~~~~~Dv~~~~~ 62 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEV-AEAIG----------------------GAFFQVDLEDERE 62 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHH-HHHHT----------------------CEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHcC----------------------CeEEEEeCCCHHH
Confidence 55555 5 6899999999999999999999999876432 22110 1122222344456
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++++++++.....+=|++|+...
T Consensus 63 v~~~~~~~~~~~G~iDiLVnnAG 85 (248)
T d2d1ya1 63 RVRFVEEAAYALGRVDVLVNNAA 85 (248)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCeEEEeCc
Confidence 77777777666655577776543
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.94 E-value=0.021 Score=54.40 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~ 40 (505)
.++||+|||+|.-|...|..|++.| ++|++++++.+
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3568999999999999999998876 69999999853
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.93 E-value=0.062 Score=46.05 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=50.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeee---CCHHHHHhhc--CCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGH---YTPRDFVLSI--QRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~---~s~~e~v~~l--~~advIil~v 80 (505)
.+|.|+|+|-+|...+..++..|. +|.+.|+++++.+...+.+... -+... +..++..+.. .+.|++|.++
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~G~D~vid~~ 106 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE---CVNPQDYKKPIQEVLTEMSNGGVDFSFEVI 106 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE---EECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee---EEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence 369999999999999999999985 7889999999988777665431 01111 1222332221 2467777777
Q ss_pred CCC
Q 010652 81 KAG 83 (505)
Q Consensus 81 p~~ 83 (505)
...
T Consensus 107 G~~ 109 (176)
T d2jhfa2 107 GRL 109 (176)
T ss_dssp CCH
T ss_pred Cch
Confidence 654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.059 Score=49.81 Aligned_cols=86 Identities=13% Similarity=0.193 Sum_probs=59.4
Q ss_pred CcEEEE--cccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLA--GLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiI--GlG~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++|++| |.+-+|..+|+.|++. |++|++++|++++.++..++....+ . .+.++.+=+.+.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------------~---~~~~~~~Dvs~~ 65 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--------------L---SPRFHQLDIDDL 65 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--------------C---CCEEEECCTTCH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------------C---cEEEEEEecCCH
Confidence 589988 6788999999999975 9999999999998877765422110 0 133444445555
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.++++++.+.....+=|++|+....
T Consensus 66 ~sv~~~~~~~~~~~g~iDiLVnNAGi 91 (275)
T d1wmaa1 66 QSIRALRDFLRKEYGGLDVLVNNAGI 91 (275)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence 66777777776655444677765443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.90 E-value=0.03 Score=45.42 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..++.|||.|.+|.-+|..|++.|.+|+++++++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 4589999999999999999999999999999876
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=93.87 E-value=0.11 Score=47.15 Aligned_cols=82 Identities=12% Similarity=0.199 Sum_probs=53.6
Q ss_pred CCcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ec
Q 010652 6 LSRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LV 80 (505)
Q Consensus 6 ~~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~v 80 (505)
+-|+++| | .+-+|.++|+.|++.|++|.+.||+++. .+...+.. ..+++.+ =+
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~----------------------g~~~~~~~~Dv 61 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL----------------------GRRVLTVKCDV 61 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT----------------------TCCEEEEECCT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHc----------------------CCcEEEEEeeC
Confidence 3466666 5 5789999999999999999999998753 22222111 0122222 23
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+...++.+++++.....+=|++|+....
T Consensus 62 s~~~~v~~~~~~~~~~~G~iDilVnnAG~ 90 (247)
T d2ew8a1 62 SQPGDVEAFGKQVISTFGRCDILVNNAGI 90 (247)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45566777777777766666788876544
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.84 E-value=0.023 Score=52.93 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=30.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~ 39 (505)
++|.|||.|.+|.+.|..|++.|. +|++.|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 489999999999999999999996 699999874
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=93.80 E-value=0.1 Score=45.26 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=52.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-e-CChhH-HHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKG-FPISVY-N-RTTSK-VDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G-~~V~v~-d-r~~~~-~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~ 79 (505)
+.||||+|+ |..|+-|.+.|.++- +++... . ++..+ +.+........ .. ......++.... +|++|++
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~Dvvf~a 78 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQ---DLPNLVAVKDADFSN---VDAVFCC 78 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTS---CCCCCBCGGGCCGGG---CSEEEEC
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccccccccccc---ccccchhhhhhhhcc---cceeeec
Confidence 468999995 999999999999874 455544 2 22222 22222111000 11 111222233344 9999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
+|.+.. . ++.+.+.....+||.+....
T Consensus 79 lp~~~s-~----~~~~~l~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 79 LPHGTT-Q----EIIKGLPQELKIVDLSADFR 105 (183)
T ss_dssp CSSSHH-H----HHHHTSCSSCEEEECSSTTT
T ss_pred cccchH-H----HHHHHHHhcCcccccchhhh
Confidence 999743 3 33344444455556555543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.084 Score=47.79 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=35.3
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~ 48 (505)
-|+++| | .+-+|.++|+.|+++|++|.+.+|+.++.++..++
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 467766 4 58899999999999999999999999887766543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=93.80 E-value=0.08 Score=48.69 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=52.8
Q ss_pred cCCCcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--
Q 010652 4 SALSRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII-- 78 (505)
Q Consensus 4 ~~~~~IgiI--GlG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil-- 78 (505)
+.+-|+.+| |.+-+|..+|+.|++.|++|.+.+|+.+ ..+.+.+..... ..+++.+
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~-------------------g~~~~~~~~ 64 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-------------------GGEAIAVKG 64 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------------TCEEEEEEC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc-------------------CCcEEEEEc
Confidence 344577777 4688999999999999999999999864 444443321110 0222222
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
=+.+.+.++++++.+...+.+=|++|+...
T Consensus 65 Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG 94 (261)
T d1geea_ 65 DVTVESDVINLVQSAIKEFGKLDVMINNAG 94 (261)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEeeccce
Confidence 223344566666666655555567776543
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.75 E-value=0.019 Score=51.36 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=30.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~ 40 (505)
+||+|||.|.-|..-|..|+++ |++|++||+.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 5899999999999999999765 789999998863
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.027 Score=51.84 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=31.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+..||.|||.|.-|..-|..|+++|++|++++.++
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34689999999999999999999999999998764
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.63 E-value=0.031 Score=44.85 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|..|.-+|..|++.|.+|++++|.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 579999999999999999999999999999876
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=93.56 E-value=0.054 Score=48.96 Aligned_cols=68 Identities=7% Similarity=0.061 Sum_probs=45.7
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
++-|.|. +-+|..+|+.|++.|++|.+.+|+++.+++...+.. ........+++++.+.+-|++|.+.
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~-----~~Dv~~~~~~~~~~~g~iD~lVnnA 74 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-----VCDLRKDLDLLFEKVKEVDILVLNA 74 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEE-----ECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEE-----EcchHHHHHHHHHHhCCCcEEEecc
Confidence 4555665 779999999999999999999999887654321110 0111234556666666677777654
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.036 Score=48.54 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
-+|.|||.|.-|...|..|+++|++|+++++++
T Consensus 6 yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 468999999999999999999999999999885
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.52 E-value=0.11 Score=47.50 Aligned_cols=83 Identities=10% Similarity=0.100 Sum_probs=50.1
Q ss_pred cEEEEcc-c--HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 8 RIGLAGL-A--VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 8 ~IgiIGl-G--~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++-|.|. | -+|.++|+.|+++|++|++.+|+++..+.+.+ +.+....+.++..-+....
T Consensus 7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~------------------l~~~~~~~~~~~~d~~~~~ 68 (274)
T d2pd4a1 7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP------------------IAQELNSPYVYELDVSKEE 68 (274)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHH------------------HHHHTTCCCEEECCTTCHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH------------------HHhhCCceeEeeecccchh
Confidence 4556675 5 49999999999999999999998643222211 1111112344444444445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++++++.+...+.+-+++|....
T Consensus 69 ~~~~~~~~~~~~~g~id~lV~nag 92 (274)
T d2pd4a1 69 HFKSLYNSVKKDLGSLDFIVHSVA 92 (274)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCC
T ss_pred hHHHHHHHHHHHcCCCCeEEeecc
Confidence 556666666665555556665544
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=93.50 E-value=0.033 Score=50.14 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=32.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.-+|.|||.|..|...|..|+++|++|.++++++.
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 35799999999999999999999999999998864
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=93.49 E-value=0.036 Score=44.89 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.+|.-+|..|++.|.+|+++++++.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 5899999999999999999999999999998864
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.022 Score=53.64 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||+|..|...|..|+++|++|.++++++
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 479999999999999999999999999999875
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.44 E-value=0.048 Score=44.17 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=31.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..++.|||.|.+|.-+|..|++.|.+|+++.+++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~ 53 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI 53 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence 3579999999999999999999999999998763
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.41 E-value=0.033 Score=45.10 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|..|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999998763
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.36 E-value=0.044 Score=44.07 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=31.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..+|.|||.|..|.-+|..|++.|.+|++++|.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 3589999999999999999999999999999864
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.089 Score=49.74 Aligned_cols=31 Identities=13% Similarity=0.392 Sum_probs=28.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr 37 (505)
|||-|+| .|.+|+.|+..|+++||+|.+.||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 6899997 599999999999999999999986
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.29 E-value=0.13 Score=46.78 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=52.0
Q ss_pred CcEE-EEcc-c--HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIG-LAGL-A--VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~Ig-iIGl-G--~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
-|+. |.|. | -+|..+|+.|++.|++|.+.+|+++..+...+.. .....+..+-.-+.+
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~------------------~~~~~~~~~~~D~~~ 69 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLA------------------EALGGALLFRADVTQ 69 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH------------------HHTTCCEEEECCTTC
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhh------------------hccCcccccccccCC
Confidence 3544 4576 4 4999999999999999999999865443332211 110012222223444
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+.++.+++.+.....+=|++|+....
T Consensus 70 ~~~v~~~~~~~~~~~g~iDilVnnag~ 96 (256)
T d1ulua_ 70 DEELDALFAGVKEAFGGLDYLVHAIAF 96 (256)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhcCCceEEEecccc
Confidence 556777777776665555777776544
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.20 E-value=0.21 Score=45.54 Aligned_cols=84 Identities=11% Similarity=0.166 Sum_probs=53.5
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cC
Q 010652 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 7 ~~IgiI--GlG~mG~~lA~~La~~G~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp 81 (505)
-|+.+| |.+-+|..+|+.|++.|++|.+.+|+. +..+++.+.... .- . .+++.+. +.
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~--------------~~-g---~~~~~~~~Dv~ 65 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAA--------------QH-G---VKVLYDGADLS 65 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHH--------------HH-T---SCEEEECCCTT
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHH--------------hc-C---CcEEEEECCCC
Confidence 467777 467799999999999999999999974 445544432110 00 0 2333322 34
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+.++++++++.....+=|++|+...
T Consensus 66 ~~~~v~~~~~~~~~~~G~iDiLVnnAG 92 (260)
T d1x1ta1 66 KGEAVRGLVDNAVRQMGRIDILVNNAG 92 (260)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEeecc
Confidence 445667777777666555577777644
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.19 E-value=0.058 Score=46.48 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=57.7
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC--CCC---eee--eCCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG--QLP---LTG--HYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g--~~~---i~~--~~s~~e~v~~l~~advIil 78 (505)
+++.|||-+ .+|.+||..|+++|..|+.++++.... +. ...... ..+ +.. .+.+++.... +|++|.
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~---aDIvIs 103 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FT-RGESLKLNKHHVEDLGEYSEDLLKKCSLD---SDVVIT 103 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EE-SCCCSSCCCCEEEEEEECCHHHHHHHHHH---CSEEEE
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--cc-cccceeeeeeccccccccchhHHhhcccc---CCEEEE
Confidence 579999976 579999999999999999998653210 00 000000 000 000 1124555555 999999
Q ss_pred ecCCCch-HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 LVKAGSP-VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+++.+.. +. ...+.+|.++||.+..
T Consensus 104 avG~p~~~i~------~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 104 GVPSENYKFP------TEYIKEGAVCINFACT 129 (171)
T ss_dssp CCCCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred ccCCCccccC------hhhcccCceEeecccc
Confidence 9988642 11 2357789999998865
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.18 E-value=0.18 Score=45.72 Aligned_cols=175 Identities=13% Similarity=0.113 Sum_probs=98.5
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEEE-EeCC----------hhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGFPISV-YNRT----------TSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~~V~v-~dr~----------~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~a 73 (505)
++|.|-|.|.+|..+|+.|.+ .|..|+. .|.+ .+.+.+...... ..+..+... -+.+++... +|
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~--~~ 109 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLEL--EV 109 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHHS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-ecccccccc--cc
Confidence 679999999999999999975 5887664 4543 233333322211 100001222 356677653 59
Q ss_pred cEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC--CCCChhhhhcCCcccCCCC
Q 010652 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG--VSGGEEGARHGPSLMPGGS 151 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p--vsgg~~~a~~G~~i~~gg~ 151 (505)
|+++-|-..+.... +..+.+ .-++|+...|... +.+..+.|.++|+.|+.-- -+||...
T Consensus 110 DIl~PcA~~~~I~~----~~a~~i-~ak~I~e~AN~p~--t~ea~~~L~~rgI~~iPD~~aNAGGVi~------------ 170 (239)
T d1gtma1 110 DVLAPAAIEEVITK----KNADNI-KAKIVAEVANGPV--TPEADEILFEKGILQIPDFLCNAGGVTV------------ 170 (239)
T ss_dssp SEEEECSCSCCBCT----TGGGGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTTHHHHH------------
T ss_pred cEEeeccccccccH----HHHHhc-cccEEEecCCCCC--CHHHHHHHHHCCCEEecchhhCCcceeE------------
Confidence 99998876653222 233444 3468888888754 3355678899999888532 2232210
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
..++.+ +... ...+. ..-+.+.++..+...+.+.+..+++.+ +++.+...++
T Consensus 171 -s~~E~~----qn~~-------~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 222 (239)
T d1gtma1 171 -SYFEWV----QNIT-------GYYWT--------IEEVRERLDKKMTKAFYDVYNIAKEKN-IHMRDAAYVV 222 (239)
T ss_dssp -HHHHHH----HHHH-------CCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred -eeeeec----cccc-------ccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence 112222 2122 00010 122445555556667778888888887 8877665543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.18 E-value=0.27 Score=45.03 Aligned_cols=83 Identities=11% Similarity=0.228 Sum_probs=52.5
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp 81 (505)
-|+.+| | .+-+|..+|+.|+++|++|.+.+++. +..+++.+..... ..++.... +.
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~~D~~ 78 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN-------------------GSDAACVKANVG 78 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------------TCCEEEEECCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh-------------------CCceeeEeCCCC
Confidence 366666 5 79999999999999999999988774 4444444321111 02233222 33
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+.+++.++.+......=+++|....
T Consensus 79 ~~~~v~~~~~~~~~~~g~idilV~nag 105 (272)
T d1g0oa_ 79 VVEDIVRMFEEAVKIFGKLDIVCSNSG 105 (272)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCccccccc
Confidence 445667777777666655677776544
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.15 E-value=0.051 Score=44.00 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=31.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..+|.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 3579999999999999999999999999998875
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.04 E-value=0.086 Score=46.26 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=35.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~ 49 (505)
.+|.|+|+|.+|...+..+...|. +|++.|+++++.+.+.+.+
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G 70 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG 70 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc
Confidence 469999999999877777766776 7889999999988777654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.97 E-value=0.036 Score=50.89 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=30.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+|.|||.|.+|.+.|..|+++|++|+++|+..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 58999999999999999999999999999853
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=92.93 E-value=0.16 Score=45.96 Aligned_cols=82 Identities=13% Similarity=0.253 Sum_probs=52.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCC
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~-dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
+|.+| | .+-+|..+|+.|+++|++|.+. .|+++..+++.++.... . .+++.+ =+.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~----------------g---~~~~~~~~Dv~~ 62 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY----------------G---GQAITFGGDVSK 62 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----------------T---CEEEEEECCTTS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc----------------C---CcEEEEeCCCCC
Confidence 35666 4 6889999999999999999885 56766666655432110 0 222222 2344
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.++++++.+.....+=|++|+...
T Consensus 63 ~~~v~~~~~~~~~~~g~iDiLVnnAg 88 (244)
T d1edoa_ 63 EADVEAMMKTAIDAWGTIDVVVNNAG 88 (244)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCccccccc
Confidence 45677777777776666677877654
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.89 E-value=0.058 Score=43.34 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..+|.|||.|.+|.-+|..|++.|.+|++..+++
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 4689999999999999999999999999998765
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.051 Score=44.12 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|..|.-+|..|++.|.+|+++.|++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 579999999999999999999999999999874
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.1 Score=47.41 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=35.6
Q ss_pred CCcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 6 LSRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 6 ~~~IgiI--GlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
.-|+.+| |.+-+|.++|+.|+++|++|.+.+|++++++++.+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 3467777 67999999999999999999999999987766543
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.60 E-value=0.053 Score=48.70 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=32.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
..+|.|||.|.-|...|..|++.|++|++++++++
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 46899999999999999999999999999998764
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.58 E-value=0.084 Score=45.28 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=35.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~ 49 (505)
.+|.|.| .|.+|...+..+...|.+|.+..+++++.+.+.+.+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~G 70 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG 70 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeeccccccccccccc
Confidence 3588878 499999999988889999999999998877666544
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.43 E-value=0.058 Score=44.31 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|..|.-+|..|++.|.+|+++++.+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 5799999999999999999999999999998753
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.055 Score=50.43 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=30.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+|.|||.|.-|..-|..|+++|++|++++++.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 48999999999999999999999999999765
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.28 E-value=0.35 Score=39.16 Aligned_cols=113 Identities=13% Similarity=0.044 Sum_probs=82.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..||-+-|. |.-|+--+..+.+.|-+|..- .+|.| .|... .++..+++.+|+++.. ++|.-++.||+..
T Consensus 15 ~TrVivQGiTG~~G~~ht~~m~~YGT~iVaG-VtPgK------gG~~~--~giPVf~tV~eA~~~~-~~daSvIfVPp~~ 84 (130)
T d1euca1 15 NTKVICQGFTGKQGTFHSQQALEYGTNLVGG-TTPGK------GGKTH--LGLPVFNTVKEAKEQT-GATASVIYVPPPF 84 (130)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTC------TTCEE--TTEEEESSHHHHHHHH-CCCEEEECCCHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEe-eccCC------CCccc--cCccchhhHHHHHHhc-CCcEEEEecCHHH
Confidence 457999997 999999999999999886633 23332 11110 1578899999999864 4899999999987
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc-CCeEEc
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~-gi~~v~ 130 (505)
+.+.+++.+...++ .+|+-+-.....|+.++.+.+.++ +.++++
T Consensus 85 a~dAi~EAi~agI~--liV~ITEgIPv~Dm~~i~~~~~~~~~~~liG 129 (130)
T d1euca1 85 AAAAINEAIDAEVP--LVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 129 (130)
T ss_dssp HHHHHHHHHHTTCS--EEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred HHHHHHHHHhCCCC--EEEEecCCCCHHHHHHHHHHHHhCCCcEEeC
Confidence 77777788776653 566667777778888887766444 455654
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=92.28 E-value=0.044 Score=49.76 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=35.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
..+|-|||.|..|...|..|+++|++|.++++++.--..+.
T Consensus 4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~ 44 (253)
T d2gqfa1 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL 44 (253)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceE
Confidence 45799999999999999999999999999999875434443
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=92.25 E-value=0.048 Score=51.34 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=31.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||+|.-|..+|..|.++|++|.+++++++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 4799999999999999999999999999998865
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.22 E-value=0.059 Score=42.93 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
..++.|||.|..|.-+|..|++.|++|+++++.+.
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 35799999999999999999999999999988753
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.17 Score=46.38 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=33.9
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010652 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 9 IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~ 48 (505)
+-|.|. +-+|.++|+.|+++|++|.+.+|+.++++++.++
T Consensus 17 alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~ 57 (269)
T d1xu9a_ 17 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH 57 (269)
T ss_dssp EEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 444565 6699999999999999999999999988877654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.02 E-value=0.2 Score=47.10 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=33.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHH
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDE 44 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~ 44 (505)
+||-|.| .|.+|+.++..|.++|++|.++||+..+...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~ 47 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS 47 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHH
Confidence 6899998 6999999999999999999999998765433
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.01 E-value=0.4 Score=40.46 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=37.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|.|.+|...+..++..|- +|++.|+++++.+...+.++
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 469999999999999988888876 68889999999888777654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.01 E-value=0.057 Score=49.27 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=32.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
++||.|+|. |.+|+.++..|.++||+|.+.+|++..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 578999995 999999999999999999999997653
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.72 E-value=0.037 Score=49.27 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=30.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-------cEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-------PISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-------~V~v~dr~~~ 40 (505)
.||+|||.|.-|.+-|..|+++|| +|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 489999999999999999999984 7999998764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.64 E-value=0.42 Score=40.93 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=71.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-CCeee-eCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-LPLTG-HYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~-~~i~~-~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|-=||+|.=..+ ..|++.+.+|+.+|++++.++.+.+.....|- .+++. ..+..+........|.|++..+.. .
T Consensus 36 ~VLDiGcGsG~~s--~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~-~ 112 (186)
T d1l3ia_ 36 VAVDVGCGTGGVT--LELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG-E 112 (186)
T ss_dssp EEEEESCTTSHHH--HHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT-C
T ss_pred EEEEEECCeEccc--ccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccc-c
Confidence 5666777653333 33566677999999999988777654322210 13433 356666666666789999876654 5
Q ss_pred HHHHHHHHhhccCCCCEE-EeCCCCChhhHHHHHHHHHHcCC
Q 010652 86 VDQTIAALSEHMSPGDCI-IDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~ii-Id~st~~~~~t~~~~~~l~~~gi 126 (505)
.+.+++.+...|++|..+ +.. ..........+.+...+.
T Consensus 113 ~~~~~~~~~~~LkpgG~lvi~~--~~~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 113 LQEILRIIKDKLKPGGRIIVTA--ILLETKFEAMECLRDLGF 152 (186)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEE--CBHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhCcCCEEEEEe--eccccHHHHHHHHHHcCC
Confidence 788888888888777654 433 233444445555555543
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.12 Score=52.66 Aligned_cols=126 Identities=7% Similarity=0.047 Sum_probs=72.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|..|.-++.||+..|. +++++|.+.=....+..+-. .....+-.-+....+.+.++- +++-+..+...
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lN-p~v~i~~~~~~ 103 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN-SDVSGSFVEES 103 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTC-TTSBCCEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhC-CCCcEEEEcCC
Confidence 3689999999999999999999996 69999876544444433210 000000011112222233221 45444444432
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
..+.++.....+..-++||++.- .+.....+.+.+.+.++.|+.+.+.|
T Consensus 104 --~~~~~~~~~~~~~~~dvVv~~~~-~~~~~~~l~~~c~~~~ip~i~~~~~G 152 (529)
T d1yova1 104 --PENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYG 152 (529)
T ss_dssp --HHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred --chhhhhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 34444333344555688887643 45555566777777888888776544
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.22 E-value=0.07 Score=43.10 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=32.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
..++.|||.|.+|.-+|..|++.|.+|++..|++.
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 35799999999999999999999999999988764
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.13 E-value=0.22 Score=45.27 Aligned_cols=82 Identities=17% Similarity=0.334 Sum_probs=50.0
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--ecCC
Q 010652 8 RIGLA--GLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 8 ~IgiI--GlG~mG~~lA~~La~~G~~V~v-~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
|+.+| |.+-+|..+|..|+++|++|++ ++++.+..+++.++....| .+++.+ -+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~~D~~~ 67 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-------------------AQGVAIQADISK 67 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC-------------------CCceEecCCCCC
Confidence 55555 4688999999999999999997 4666666665554321110 233322 2333
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+.++..++.+......=+++|....
T Consensus 68 ~~~v~~~~~~~~~~~g~idilinnag 93 (259)
T d1ja9a_ 68 PSEVVALFDKAVSHFGGLDFVMSNSG 93 (259)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEeccc
Confidence 44566666666655544456666544
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=91.09 E-value=0.067 Score=50.25 Aligned_cols=34 Identities=9% Similarity=0.221 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHH-----hCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVA-----EKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-----~~G~~V~v~dr~~~ 40 (505)
-.|.|||.|..|..+|..|+ ++|++|+++++++.
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 46999999999999999996 58999999998764
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.03 E-value=0.2 Score=42.63 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG 29 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G 29 (505)
+.+|+++|+|.+|+.++..|.++.
T Consensus 4 ~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 4 VVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCC
T ss_pred EEEEEEEeCCHHHHHHHHHHHHhH
Confidence 458999999999999999998754
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=90.96 E-value=0.11 Score=49.32 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=33.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHH
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKV 42 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~ 42 (505)
.+++|.|+| .|.+|+.++..|.++||+|.+..|++.+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 356899998 59999999999999999999999887654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.91 E-value=0.63 Score=39.06 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=36.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|+|-+|...+..+...|. .|++.++++++.+...+.++
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa 74 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA 74 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC
Confidence 369999999999999888888896 57778999998877766554
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.91 E-value=0.057 Score=49.15 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=30.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
|||-|.|. |.+|+.|+..|.++||+|++.||+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 68999996 9999999999999999999999864
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.72 E-value=0.15 Score=40.63 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 5799999999999999999999999999998764
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=90.65 E-value=0.085 Score=49.76 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=32.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDET 45 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~ 45 (505)
|||-|.| .|.+|+.++..|+++|+ +|++.|+.......+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~ 41 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF 41 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh
Confidence 5899998 59999999999999995 899999876654443
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.55 E-value=0.051 Score=48.76 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=47.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~v 80 (505)
.++|-|.| .|.+|+.++..|.++|. +|++.+|++.+...-..... .... ..+++++.+.++.+|+++.++
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i-----~~~~~D~~~~~~~~~~~~~~d~vi~~~ 88 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV-----NQEVVDFEKLDDYASAFQGHDVGFCCL 88 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC-----EEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccccccee-----eeeeecccccccccccccccccccccc
Confidence 45799998 59999999999999995 89999998654221111100 1111 224455555666788888877
Q ss_pred CC
Q 010652 81 KA 82 (505)
Q Consensus 81 p~ 82 (505)
..
T Consensus 89 ~~ 90 (232)
T d2bkaa1 89 GT 90 (232)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=90.14 E-value=0.36 Score=43.99 Aligned_cols=118 Identities=10% Similarity=-0.022 Sum_probs=65.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCC----------hhHHHHHHHhh-ccc-CCC-------CeeeeCCHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISV-YNRT----------TSKVDETLDRA-HRE-GQL-------PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v-~dr~----------~~~~~~~~~~~-~~~-g~~-------~i~~~~s~~e~ 66 (505)
.+|.|=|.|++|..+|+.|.+.|.+|+. .|.+ .+.+.+...+. ... +.. ..... +.+++
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 115 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-PGEKP 115 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-ETCCG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-chhhc
Confidence 5799999999999999999999998764 3432 22222221110 000 000 01111 22233
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... +||+++-|-..+....+.++.|...- =++|+...|.. .+.+.....+.++|+.++.
T Consensus 116 ~~~--~~DiliPcA~~~~I~~~~a~~l~a~~--ck~I~EgAN~p-~t~ea~~~ll~~~gI~vvP 174 (255)
T d1bgva1 116 WGQ--KVDIIMPCATQNDVDLEQAKKIVANN--VKYYIEVANMP-TTNEALRFLMQQPNMVVAP 174 (255)
T ss_dssp GGS--CCSEEECCSCTTCBCHHHHHHHHHTT--CCEEECCSSSC-BCHHHHHHHHHCTTCEEEC
T ss_pred ccc--cccEEeeccccccccHHHHHhhhhcC--ceEEecCCCCC-cchHHHHHHHHhcCCEEeh
Confidence 332 48998877655443344445554310 15788877764 3444444456778988764
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.85 E-value=1 Score=41.83 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=51.1
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcC-CCcEEEEecCCC
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ-RPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~-~advIil~vp~~ 83 (505)
-|+.+| | .+-+|..+|+.|+++|++|.+.||+.+..... ......+++++.+. ....+..-+.+.
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~d~~~~ 74 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVG------------KGSSAADKVVEEIRRRGGKAVANYDSV 74 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCB------------CCSHHHHHHHHHHHHTTCEEEEECCCG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhh------------hhHHHHHHHHHHHhhcccccccccchH
Confidence 467777 5 57799999999999999999998875421000 00011111111110 123334444444
Q ss_pred chHHHHHHHHhhccCCCCEEEeCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
..++++++.+.....+=|++|+..
T Consensus 75 ~~~~~~v~~~~~~~G~iDiLVnNA 98 (302)
T d1gz6a_ 75 EAGEKLVKTALDTFGRIDVVVNNA 98 (302)
T ss_dssp GGHHHHHHHHHHHTSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 556667766666555556777654
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.78 E-value=0.34 Score=43.68 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=51.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+.|-|.|. +-+|..+|+.|++.|+ .|.+..|+.++.+++.+... .. ..++.+=+.+.
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~-----------------~~---~~~~~~Dvs~~ 63 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD-----------------SR---VHVLPLTVTCD 63 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCC-----------------TT---EEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhC-----------------Cc---eEEEEEecCCH
Confidence 34555564 8899999999999996 57778999988776653210 01 22333334555
Q ss_pred chHHHHHHHHhhccCC--CCEEEeCCC
Q 010652 84 SPVDQTIAALSEHMSP--GDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~--g~iiId~st 108 (505)
+.++++++.+...+.. =|++|....
T Consensus 64 ~~v~~~~~~i~~~~~~~~idilinnAG 90 (250)
T d1yo6a1 64 KSLDTFVSKVGEIVGSDGLSLLINNAG 90 (250)
T ss_dssp HHHHHHHHHHHHHHGGGCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCc
Confidence 5677777666554322 366776654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.25 Score=41.91 Aligned_cols=44 Identities=11% Similarity=0.000 Sum_probs=36.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+| .|.+|..........|.+|++.++++++.+.+.+.++
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 3688885 5669988888888899999999999999888776654
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=89.75 E-value=0.51 Score=42.37 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=28.8
Q ss_pred cEEEEcc-c--HHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 010652 8 RIGLAGL-A--VMGQNLALNVAEKGFPISVYNRTTSKVDET 45 (505)
Q Consensus 8 ~IgiIGl-G--~mG~~lA~~La~~G~~V~v~dr~~~~~~~~ 45 (505)
++-|.|. | -+|.++|+.|++.|++|++.+|+++..+.+
T Consensus 7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 3445565 4 378999999999999999999986644433
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.68 E-value=0.14 Score=46.19 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=28.9
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|||.|| | .+-+|.++|+.|++.|++|.+.||+++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 466666 5 578999999999999999999998764
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=89.45 E-value=0.58 Score=42.14 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=30.4
Q ss_pred cEEEEcc-cH--HHHHHHHHHHhCCCcEEEEeCChhHHH
Q 010652 8 RIGLAGL-AV--MGQNLALNVAEKGFPISVYNRTTSKVD 43 (505)
Q Consensus 8 ~IgiIGl-G~--mG~~lA~~La~~G~~V~v~dr~~~~~~ 43 (505)
++-|.|. |. +|.++|+.|+++|.+|.+.+|+.++..
T Consensus 8 ~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~ 46 (268)
T d2h7ma1 8 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI 46 (268)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 4666685 65 999999999999999999999987653
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=89.34 E-value=0.16 Score=41.16 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=31.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
..++.|||.|..|.-+|..|++.|.+|++.++.+.
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 35799999999999999999999999999988763
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=89.29 E-value=0.18 Score=46.01 Aligned_cols=96 Identities=18% Similarity=0.094 Sum_probs=66.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.||++||. + ++...+.+.|.++.++||++.. + .......++++.. ||+||+.-.+ -+
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~-------g-------d~p~~~~~~lLp~---aD~viiTGsT--lv 179 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE-------G-------DYPLPASEFILPE---CDYVYITCAS--VV 179 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT-------T-------CEEGGGHHHHGGG---CSEEEEETHH--HH
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC-------C-------CCCchHHHHhhhc---CCEEEEEech--hh
Confidence 57999986 4 6778888999999999999741 1 2334455667666 9999988543 57
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
...++.|+.+.++...|+-.+-+.|-.-. +-+.|+.+++
T Consensus 180 N~Tl~~LL~~~~~a~~vvl~GPS~p~~P~-----lf~~Gv~~la 218 (251)
T d2h1qa1 180 DKTLPRLLELSRNARRITLVGPGTPLAPV-----LFEHGLQELS 218 (251)
T ss_dssp HTCHHHHHHHTTTSSEEEEESTTCCCCGG-----GGGTTCSEEE
T ss_pred cCCHHHHHHhCCcCCEEEEECCCcccCHH-----HHhcCCceEe
Confidence 77889999988777666555444332221 2245777665
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=89.26 E-value=0.088 Score=44.77 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=75.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhH--hhhhhhcccccccCCchhHHHHHhhhCC
Q 010652 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLV--EITADIFKVKDEYGEGELVDKILDKTGM 265 (505)
Q Consensus 188 K~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~--~~~~~~l~~~~~~~~~~~ld~i~~~~~~ 265 (505)
+.-.|.....+...+.|+..+++..| -+++.+... .|.++-.+. ...++..+-...+..+..++.+.+..+|
T Consensus 27 ~~g~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~l-----aGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~ 100 (160)
T d1n1ea1 27 GMGLNARAALIMRGLLEIRDLTAALG-GDGSAVFGL-----AGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 100 (160)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTT-CCSTTTTST-----TTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCS
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhC-CCccceecc-----ccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccc
Confidence 45578888899999999999999998 555443221 121121110 0000000000011123466777888889
Q ss_pred CccHHHHHH----HHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccC
Q 010652 266 KGTGKWTVQ----QAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 266 kgtg~~~~~----~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
+-+|..++. .+.++++.+|++.+. .+.+...++.+..+..+++.|
T Consensus 101 ~vEG~~t~~~v~~l~~~~~i~~Pi~~~v--y~Il~~~~~p~~~i~~Lm~r~ 149 (160)
T d1n1ea1 101 VAEGVATADPLMRLAKQLKVKMPLCHQI--YEIVYKKKNPRDALADLLSCG 149 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHH--HHHHHSCCCHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHcCCCCcHHHHH--HHHHhCcCCHHHHHHHHHCCC
Confidence 999988875 567789999999863 577888888888888887655
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.09 E-value=0.29 Score=44.00 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=29.7
Q ss_pred CCcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010652 6 LSRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 6 ~~~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
+.|+.+| | .+-+|..+|+.|++.|++|.+.+|+.+.
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~ 43 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 43 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence 4455555 5 4679999999999999999999998654
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=89.09 E-value=0.91 Score=41.05 Aligned_cols=40 Identities=13% Similarity=0.365 Sum_probs=30.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHH
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLD 47 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr-~~~~~~~~~~ 47 (505)
-|+|| | .+-+|.++|+.|+++|++|.+.++ +.+..+++.+
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~ 45 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSA 45 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHH
Confidence 47888 4 578999999999999999998654 5555555443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.86 E-value=0.31 Score=44.13 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=36.9
Q ss_pred CCCcEEEE-cc-cHHHHHHHHHHHh---CCCcEEEEeCChhHHHHHHHh
Q 010652 5 ALSRIGLA-GL-AVMGQNLALNVAE---KGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 5 ~~~~IgiI-Gl-G~mG~~lA~~La~---~G~~V~v~dr~~~~~~~~~~~ 48 (505)
..-||+|| |. +-+|..+|+.|++ +|++|.+.+|++++++++.++
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~ 52 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEE 52 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHH
Confidence 45689999 64 6799999999986 799999999999988777653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.68 E-value=0.15 Score=44.11 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~ 39 (505)
|||.|||.|..|..+|..|++. +.+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 6899999999999999999886 45799998764
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.38 E-value=0.2 Score=47.14 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=28.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr 37 (505)
..||-|.| .|.+|+.|+..|+++|++|++.|+
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 35899987 599999999999999999999975
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=88.35 E-value=0.52 Score=37.68 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCcEEEEccc-----------HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010652 6 LSRIGLAGLA-----------VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgiIGlG-----------~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
..||-|||.| ..+...++.|.+.|+++.+.|-||+.+ .++++ + +|
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV-----------------std~d-~------aD 59 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV-----------------STDYD-T------SD 59 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS-----------------TTSTT-S------SS
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh-----------------hcChh-h------cC
Confidence 4689999997 678889999999999999999998742 12222 1 45
Q ss_pred EEE-EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 75 SVI-ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 75 vIi-l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
.+. ..+.. +.+.++ ...-.|..+++-.+. .+...+...|.+.|+..++.
T Consensus 60 ~lYfeplt~-e~v~~I----i~~E~p~~ii~~~GG---Qtalnla~~L~~~gv~iLGt 109 (121)
T d1a9xa4 60 RLYFEPVTL-EDVLEI----VRIEKPKGVIVQYGG---QTPLKLARALEAAGVPVIGT 109 (121)
T ss_dssp EEECCCCSH-HHHHHH----HHHHCCSEEECSSST---HHHHTTHHHHHHTTCCBCSS
T ss_pred ceEEccCCH-HHHHHH----HHHhCCCEEEeehhh---hhHHHHHHHHHHcCCcEECC
Confidence 544 34432 233333 333345667766655 34455566677777655443
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=88.34 E-value=0.17 Score=42.32 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~ 39 (505)
+||.|||.|..|..+|..|.+.|. +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 589999999999999999999885 688998876
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=88.09 E-value=0.17 Score=46.28 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.-|...|..|++ .|++|+++|+.+.
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 469999999999999999987 5999999998864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.06 E-value=1.5 Score=38.93 Aligned_cols=121 Identities=8% Similarity=-0.013 Sum_probs=72.2
Q ss_pred CcEEEEccc--HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-e---CCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLA--VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-H---YTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG--~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~---~s~~e~v~~l~~advIil~v 80 (505)
++|.=+|+| ..-..||...-. +-.|+.+|.++..++.+.+.....+ ++.. . ..++.........|+|+..+
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG~-~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~~d~ 151 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEeccCCCHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEEEEc
Confidence 578788775 444444443323 3479999999999888776543221 2222 1 12222222223468888888
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeC-------CCCChhhHHHHHHHHHHcCCeEEc
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDG-------GNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~-------st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+...+.+.++..+...|++|-.++-+ ++..+....+-.+.+.+.|+..++
T Consensus 152 ~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie 208 (227)
T d1g8aa_ 152 AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIE 208 (227)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 87777888888888888887755432 333444444444455556776654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.89 E-value=0.41 Score=40.98 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=66.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhc--CCCcEEEEecCCCc
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI--QRPRSVIILVKAGS 84 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l--~~advIil~vp~~~ 84 (505)
+|-|.| .|-+|..........|.+|+...+++++.+.+.+.+... -+......++.+..+ ++.|+|+-++...
T Consensus 34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~---vi~~~~~~~~~~~~~~~~gvD~vid~vgg~- 109 (176)
T d1xa0a2 34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE---VLAREDVMAERIRPLDKQRWAAAVDPVGGR- 109 (176)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE---EEECC---------CCSCCEEEEEECSTTT-
T ss_pred EEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce---eeecchhHHHHHHHhhccCcCEEEEcCCch-
Confidence 588888 599999888888889999999999999988887766532 111112223333322 3468888888653
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
.. +..+..+.++-.++.++........-....+--+++.+++.
T Consensus 110 ~~----~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv 152 (176)
T d1xa0a2 110 TL----ATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI 152 (176)
T ss_dssp TH----HHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred hH----HHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence 33 34444555555666655442222111112223346666654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.80 E-value=0.21 Score=44.78 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=61.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEe------
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIIL------ 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~------ 79 (505)
.+|-=||+|. ..++..|++.|++|++.|.+++-++.+.+.....+ .++.. +.+..++-- -++-|+|+++
T Consensus 39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~-~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG-LKPRLACQDISNLNI-NRKFDLITCCLDSTNY 114 (246)
T ss_dssp TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT-CCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccccC-ccceeeccchhhhcc-cccccccceeeeeeec
Confidence 4688899983 34677888999999999999998776654322111 12322 334544321 1235888864
Q ss_pred cCCCchHHHHHHHHhhccCCCC-EEEeCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGD-CIIDGG 107 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iiId~s 107 (505)
+++.+....+++.+...|.+|- +|+|..
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 3444566778889999888765 555543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=87.48 E-value=0.36 Score=45.43 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=35.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
++|.|.| .|.+|+.++..|.++||+|.+..|+.++.+.+.
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~ 52 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHH
Confidence 4799998 599999999999999999999999988766554
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.29 E-value=1.7 Score=38.62 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=28.4
Q ss_pred EEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHH
Q 010652 9 IGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKV 42 (505)
Q Consensus 9 IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~~ 42 (505)
+++| | .+-+|.++|+.|+++|++|++.+|+.++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 4555 4 56799999999999999999999987653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.18 E-value=0.36 Score=42.97 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=60.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEec-----
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILV----- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~v----- 80 (505)
.+|-=||+|. | .++..|+++|++|++.|.+++-++.+.+.....+ .++.. ..+.+++--. +.-|.|+++-
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~-~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKERN-LKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeecccccccccccccccc-ccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 4688999996 4 4567799999999999999988776665432211 12222 3344433211 2357777642
Q ss_pred CCCchHHHHHHHHhhccCCCC-EEEeCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGD-CIIDGGN 108 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~-iiId~st 108 (505)
.+....+.+++.+...|.+|- +++|..+
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 222345677888888887765 5555433
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=87.13 E-value=0.52 Score=43.45 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=27.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr 37 (505)
||-|.| .|.+|+.++..|.++||+|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 788887 599999999999999999999974
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.49 E-value=0.31 Score=40.93 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhC----CC
Q 010652 191 HNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTG----MK 266 (505)
Q Consensus 191 ~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~----~k 266 (505)
.|.........+.|+..+++..| -+++.+... .|.++-.+.-..++..+-...+..+..++.+.+.+. +.
T Consensus 34 ~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~~-----aGiGDLi~Tc~~sRN~~~G~~l~~G~~~~e~~~~~~~~~~~~ 107 (155)
T d1txga1 34 SNAKGVIATRAINEMAELIEILG-GDRETAFGL-----SGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGV 107 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SCGGGGGST-----TTHHHHHHTTTCHHHHHHHHHHHTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhHhhHHHhhc-ccchhhccc-----chhhhHHhhcCCCCccHHHHHHhhhhhHHHHHHHhccccccc
Confidence 58888888999999999999998 677654321 111111110000000000001112234455555443 24
Q ss_pred ccHHHHHH----HHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHh
Q 010652 267 GTGKWTVQ----QAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVL 309 (505)
Q Consensus 267 gtg~~~~~----~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~ 309 (505)
-+|..++. .+.++++.+|++.+ + .+.+...++....+..++
T Consensus 108 vEG~~t~~~v~~l~~~~~i~~Pi~~~-v-y~Il~~~~~~~~~i~~L~ 152 (155)
T d1txga1 108 VEGYKTAEKAYRLSSKINADTKLLDS-I-YRVLYEGLKVEEVLFELA 152 (155)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHH-H-HHHHHSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCcHHHH-H-HHHHhCcCCHHHHHHHHH
Confidence 56877775 66778999999986 3 456655555555554443
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=86.38 E-value=0.19 Score=45.69 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=31.1
Q ss_pred EEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 11 LAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 11 iIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
|-|. +-+|..+|+.|++.|++|.+.||+.++.+++..
T Consensus 5 VTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 4454 559999999999999999999999888776654
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.16 E-value=0.3 Score=42.55 Aligned_cols=31 Identities=13% Similarity=-0.075 Sum_probs=29.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCC
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRT 38 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~ 38 (505)
+|.|||.|.-|...|..+++.|.+|.+++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 5899999999999999999999999999986
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.12 E-value=0.3 Score=42.78 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
-+|.|||.|.-|..-|..+++.|.+|.+++..+
T Consensus 6 yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 369999999999999999999999999999764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=85.70 E-value=0.54 Score=40.73 Aligned_cols=99 Identities=10% Similarity=0.093 Sum_probs=59.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCC---
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA--- 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~--- 82 (505)
.+|-=||+|. ..++..|++.|++|++.|.+++.++.+.+.....+ ..+ ....+..++-..-..-|+|+..---
T Consensus 39 ~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhcccc-ccccccccccccccccCcCceEEEEecchhhC
Confidence 4688899986 33667888999999999999998776654322211 111 2233444332111225777764311
Q ss_pred -CchHHHHHHHHhhccCCCC-EEEeCCC
Q 010652 83 -GSPVDQTIAALSEHMSPGD-CIIDGGN 108 (505)
Q Consensus 83 -~~~v~~vl~~l~~~l~~g~-iiId~st 108 (505)
+.....+++++...|.||- ++++..+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 1245667888888888765 4555443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=85.57 E-value=0.48 Score=40.35 Aligned_cols=92 Identities=9% Similarity=-0.032 Sum_probs=59.0
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee--CC-HHHHHhh--cCCCcEEEEecC
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YT-PRDFVLS--IQRPRSVIILVK 81 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~--~s-~~e~v~~--l~~advIil~vp 81 (505)
+|-|.|. |.+|...+......|.+|++..+++++.+.+.+.+... +... .+ .+++.+. -...|+|+-++.
T Consensus 32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~----vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG 107 (182)
T d1v3va2 32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA----AFNYKTVNSLEEALKKASPDGYDCYFDNVG 107 (182)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE----EEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred EEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh----hcccccccHHHHHHHHhhcCCCceeEEecC
Confidence 5777787 77888888888889999999999999988877765431 1111 11 1222221 134688887774
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
. + .++...+.+.++-.++..+.
T Consensus 108 ~-~----~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 108 G-E----FLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp H-H----HHHHHGGGEEEEEEEEECCC
T ss_pred c-h----hhhhhhhhccCCCeEEeecc
Confidence 2 2 34556666666666666553
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.48 E-value=0.3 Score=40.59 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=28.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.||.|||.|..|.-+|..|++ +++|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 379999999999999999965 78999998754
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=85.44 E-value=0.15 Score=43.45 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=27.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEe
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYN 36 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~d 36 (505)
|+.+|.|||.|..|..+|..|++.|++|.+..
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCCceEEEE
Confidence 45689999999999999999999998766553
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=85.40 E-value=2.5 Score=37.80 Aligned_cols=83 Identities=7% Similarity=0.085 Sum_probs=49.9
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--CCC-c
Q 010652 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAG-S 84 (505)
Q Consensus 9 IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~-~ 84 (505)
|-|.| .+-+|..+|+.|++.|.+|.+..|+.++.+.+.+... ......+.+..+ ..+ .
T Consensus 8 vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~------------------~~~~~~~~~~~~d~~~~~~ 69 (254)
T d1sbya1 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA------------------INPKVNITFHTYDVTVPVA 69 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHH------------------HCTTSEEEEEECCTTSCHH
T ss_pred EEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHh------------------hCCCCCEEEEEeecCCCHH
Confidence 44445 4679999999999999999888766655443332110 000123333332 212 3
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++++.+.....+=|++|.....
T Consensus 70 ~~~~~~~~~~~~~g~iDilvnnAG~ 94 (254)
T d1sbya1 70 ESKKLLKKIFDQLKTVDILINGAGI 94 (254)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEeCCCC
Confidence 4667777777766555788876543
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=85.28 E-value=0.35 Score=44.57 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
-+|.|||.|.-|...|..|+++|.+|.+.++.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 479999999999999999999999999999875
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.74 E-value=0.36 Score=46.24 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr 37 (505)
|||-|.| .|.+|+.++..|+++||+|+++|-
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn 33 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDN 33 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence 6899998 599999999999999999999984
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.64 E-value=0.41 Score=44.40 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=29.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRT 38 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~ 38 (505)
+||-|.| .|.+|+.++..|.++||+|+++|+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 5899998 5999999999999999999999863
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.49 E-value=0.33 Score=42.47 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=31.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRT 38 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~ 38 (505)
+..+|-|||.|..|...|..+++.|.+|.+.++.
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4468999999999999999999999999999875
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=84.34 E-value=0.37 Score=41.85 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
-.|.|||.|.-|...|..+++.|.+|.++++.+
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 479999999999999999999999999999764
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=84.28 E-value=0.43 Score=41.97 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=30.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.|.|||.|.-|...|..+++.|++|.++++.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 68999999999999999999999999999765
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=84.01 E-value=1.3 Score=39.49 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=52.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHH---hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--c
Q 010652 7 SRIGLAGL-AVMGQNLALNVA---EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--V 80 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La---~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--v 80 (505)
++|-|.|. +-+|..+|+.|+ +.|++|++.+|++++.+++.+.. +. ..++.++. +
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~------------------~~--~~~~~~~~~Dv 62 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLA------------------KN--HSNIHILEIDL 62 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHH------------------HH--CTTEEEEECCT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH------------------hc--CCcEEEEEEEe
Confidence 46878886 779999998885 57999999999998766544221 11 02333333 3
Q ss_pred CCCchHHHHHHHHhhc--cCCCCEEEeCCC
Q 010652 81 KAGSPVDQTIAALSEH--MSPGDCIIDGGN 108 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~--l~~g~iiId~st 108 (505)
.+.+.++++++.+... ..+=|++|....
T Consensus 63 s~~~~v~~~~~~i~~~~~~~~iDiLvnNAg 92 (248)
T d1snya_ 63 RNFDAYDKLVADIEGVTKDQGLNVLFNNAG 92 (248)
T ss_dssp TCGGGHHHHHHHHHHHHGGGCCSEEEECCC
T ss_pred ccHHHHHHHHhhhHHHhhcCCcceEEeecc
Confidence 4556677777766432 223367776544
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=83.90 E-value=7.1 Score=31.21 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC-----chHHHHH
Q 010652 16 VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-----SPVDQTI 90 (505)
Q Consensus 16 ~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~-----~~v~~vl 90 (505)
.|...++..+.+.|++|.++|.+.... +++...+..+|.|++..|.. ..++..+
T Consensus 18 ~vA~~Ia~~l~~~g~~v~~~~~~~~~~---------------------~~~~~~~~~~d~ii~Gspt~~g~~~~~~~~~l 76 (149)
T d1ycga1 18 KMAHALMDGLVAGGCEVKLFKLSVSDR---------------------NDVIKEILDARAVLVGSPTINNDILPVVSPLL 76 (149)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCH---------------------HHHHHHHHHCSEEEEECCCBTTBCCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCeeEEEEccccch---------------------HHHhhhhhhCCeEEEEeecccCCCCHHHHHHH
Confidence 477778888888999999887654322 22222222289999999864 3577888
Q ss_pred HHHhhccCCCCEEEeC-CCC-ChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhhcc
Q 010652 91 AALSEHMSPGDCIIDG-GNE-WYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQ 168 (505)
Q Consensus 91 ~~l~~~l~~g~iiId~-st~-~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~iga~ 168 (505)
+.+...-.++..+.-. +-. .......+.+.+...|...+..|..-. . ..-+++.+++++++-+.++.+
T Consensus 77 ~~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~~~-----~-----~~P~~~dl~~~~e~g~~ia~k 146 (149)
T d1ycga1 77 DDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTV-----Q-----WVPRGEDLQRCYELGRKIAAR 146 (149)
T ss_dssp HHHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCCEE-----E-----SSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEeccceEEE-----c-----ccCCHHHHHHHHHHHHHHHHH
Confidence 7776643345443332 222 233455677788888888775431100 0 011456677777777777644
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.67 E-value=0.37 Score=47.35 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~ 39 (505)
+||.|||+|.+|..++.+|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999998 799998765
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=83.56 E-value=0.25 Score=46.50 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr 37 (505)
||||-|.| .|.+|+.|+..|.++|++|.++++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 57999998 699999999999999998666543
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.18 E-value=0.5 Score=40.89 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..+|-|||.|..|...|..+++.|.+|.++++..
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3579999999999999999999999999998764
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.13 E-value=0.43 Score=45.97 Aligned_cols=34 Identities=12% Similarity=0.286 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh------CCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAE------KGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~------~G~~V~v~dr~~~ 40 (505)
-.|.|||.|.-|.+.|..|++ +|++|.++++...
T Consensus 33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 479999999999999999997 8999999998753
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=82.96 E-value=0.4 Score=42.44 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=28.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010652 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 8 ~IgiI-G-lG~mG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
|+++| | .+-+|..+|+.|+++|++|.+.||+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 45555 5 5899999999999999999999998653
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.93 E-value=2 Score=36.58 Aligned_cols=70 Identities=23% Similarity=0.158 Sum_probs=50.2
Q ss_pred CcEEEEcc--cHHHHHHHHHHHhCCCcEEEEeCC-----hhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGL--AVMGQNLALNVAEKGFPISVYNRT-----TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGl--G~mG~~lA~~La~~G~~V~v~dr~-----~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.||++||= -++..+++..++.-|.+|.+.... ++-++.+.+.....| .++..+.+++++++. +|+|..-
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~eai~~---aDvVyt~ 81 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG-AKLTLTEDPKEAVKG---VDFVHTD 81 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT-CEEEEESCHHHHTTT---CSEEEEC
T ss_pred CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccC-CeEEEEeChhhcccc---ccEEEee
Confidence 58999994 589999999999999999998653 233333322111111 157888999999987 9998875
Q ss_pred c
Q 010652 80 V 80 (505)
Q Consensus 80 v 80 (505)
+
T Consensus 82 ~ 82 (185)
T d1dxha2 82 V 82 (185)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=82.85 E-value=0.66 Score=42.45 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=28.8
Q ss_pred cEEEEccc---HHHHHHHHHHHhCCCcEEEEeCChhHH
Q 010652 8 RIGLAGLA---VMGQNLALNVAEKGFPISVYNRTTSKV 42 (505)
Q Consensus 8 ~IgiIGlG---~mG~~lA~~La~~G~~V~v~dr~~~~~ 42 (505)
++-|.|.+ -+|..+|+.|+++|.+|.+.+|+++..
T Consensus 10 ~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~ 47 (297)
T d1d7oa_ 10 RAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALN 47 (297)
T ss_dssp EEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhh
Confidence 35555875 499999999999999999999987643
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=82.79 E-value=3.3 Score=33.54 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC-----chHHHHH
Q 010652 16 VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-----SPVDQTI 90 (505)
Q Consensus 16 ~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~-----~~v~~vl 90 (505)
.|...++..|.+.|++|.++|.+... .++....+..+|.|++..|.. ..+...+
T Consensus 18 ~~A~~Ia~~l~~~g~ev~~~~~~~~~---------------------~~~~~~~l~~~d~vi~Gspt~~~~~~~~~~~~l 76 (152)
T d1e5da1 18 KMARVLAESFRDEGCTVKLMWCKACH---------------------HSQIMSEISDAGAVIVGSPTHNNGILPYVAGTL 76 (152)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTTSC---------------------HHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEeecccCC---------------------hhhhccchhhCCEEEEeccccCCccCchhHHHH
Confidence 46777888888899999998865432 222222222389999999884 3567777
Q ss_pred HHHhhccCCCCEEEeCCC-C-ChhhHHHHHHHHHHcCCeEEcCC
Q 010652 91 AALSEHMSPGDCIIDGGN-E-WYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 91 ~~l~~~l~~g~iiId~st-~-~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
+.+...-.++..+.-.++ + .......+.+.+.+.|...++.|
T Consensus 77 ~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~~~ 120 (152)
T d1e5da1 77 QYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATP 120 (152)
T ss_dssp HHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCC
T ss_pred HHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEecCc
Confidence 666543334554333222 2 33445677788888888776544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=82.73 E-value=0.73 Score=41.70 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=67.3
Q ss_pred CcEEEEccc--HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC-CCCeeee-CCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLA--VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG-QLPLTGH-YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG--~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g-~~~i~~~-~s~~e~v~~l~~advIil~vp~ 82 (505)
++|.=+|+| .+...||+.+... -+|+.+|++++.++.+.+.....+ ..++... .+..+...+ ...|.|++-+|+
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~-~~fD~V~ld~p~ 164 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD-QMYDAVIADIPD 164 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS-CCEEEEEECCSC
T ss_pred CEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc-ceeeeeeecCCc
Confidence 467778765 4455555555444 379999999998877665432211 0133322 233333221 236999998888
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
+. .+++.+...|.+|-.++-.+.. .....+..+.+++.|+
T Consensus 165 p~---~~l~~~~~~LKpGG~lv~~~P~-i~Qv~~~~~~l~~~gf 204 (250)
T d1yb2a1 165 PW---NHVQKIASMMKPGSVATFYLPN-FDQSEKTVLSLSASGM 204 (250)
T ss_dssp GG---GSHHHHHHTEEEEEEEEEEESS-HHHHHHHHHHSGGGTE
T ss_pred hH---HHHHHHHHhcCCCceEEEEeCC-cChHHHHHHHHHHCCC
Confidence 64 4567778888888777653222 2344555666666664
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=82.63 E-value=0.73 Score=40.42 Aligned_cols=92 Identities=13% Similarity=0.197 Sum_probs=57.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC---C
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA---G 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~---~ 83 (505)
.+|-=||+| ...++..|++.|++|++.|.+++.++.+.+.+.. .....+.+++--.-..-|+|+.+-.. -
T Consensus 44 ~~vLDiGcG--~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-----~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~ 116 (246)
T d2avna1 44 CRVLDLGGG--TGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLPFPSGAFEAVLALGDVLSYV 116 (246)
T ss_dssp CEEEEETCT--TCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-----CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CEEEEECCC--CchhcccccccceEEEEeeccccccccccccccc-----ccccccccccccccccccceeeecchhhhh
Confidence 468888998 3455667889999999999999988877765432 12233444331110125777754211 0
Q ss_pred chHHHHHHHHhhccCCCCEEEe
Q 010652 84 SPVDQTIAALSEHMSPGDCIID 105 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId 105 (505)
...+.+++++...|.+|-+++-
T Consensus 117 ~d~~~~l~~i~r~Lk~gG~~ii 138 (246)
T d2avna1 117 ENKDKAFSEIRRVLVPDGLLIA 138 (246)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEE
T ss_pred hhHHHHHHHHHhhcCcCcEEEE
Confidence 1245677888888887765543
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=82.60 E-value=0.52 Score=43.75 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.-|...|..|+++|++|.+.++.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 579999999999999999999999999999875
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.60 E-value=0.54 Score=43.62 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=62.5
Q ss_pred CcEEEEcccHHHHHHHHHHHh----CCC-------cEEEEeCCh----hH---HHHHHHhhcccCCCCeeeeCCHHHHHh
Q 010652 7 SRIGLAGLAVMGQNLALNVAE----KGF-------PISVYNRTT----SK---VDETLDRAHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~----~G~-------~V~v~dr~~----~~---~~~~~~~~~~~g~~~i~~~~s~~e~v~ 68 (505)
.||.|+|+|.-|.++|..+.. .|. +++++|+.- ++ .+.......+.. .-....+++|+++
T Consensus 26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~--~~~~~~~L~e~i~ 103 (294)
T d1pj3a1 26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSA--PESIPDTFEDAVN 103 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCC--CSSCCSSHHHHHH
T ss_pred cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccc--cccchhHHHHHHH
Confidence 589999999999999988654 343 588988742 11 111111100000 0112357888887
Q ss_pred hcCCCcEEEEec-CCCchHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 69 SIQRPRSVIILV-KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 69 ~l~~advIil~v-p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
.++ ++++|-+. +.+...+++++.+.. +.+.-||.-+||-.+.
T Consensus 104 ~~k-ptvliG~S~~~g~ft~evi~~Ma~-~~~~PIIFaLSNPt~~ 146 (294)
T d1pj3a1 104 ILK-PSTIIGVAGAGRLFTPDVIRAMAS-INERPVIFALSNPTAQ 146 (294)
T ss_dssp HHC-CSEEEECCCSSCCSCHHHHHHHHH-HCSSCEEEECCSSGGG
T ss_pred hcC-CceEEEecCCCCcCCHHHHHHHHh-cCCCcEEEEccCCCCc
Confidence 543 66655544 555556788877765 4567788889887654
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.50 E-value=0.47 Score=41.69 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=29.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+|.|||.|.-|...|..+++.|.+|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 68999999999999999999999999998653
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=82.48 E-value=0.44 Score=44.64 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=29.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr 37 (505)
.-++.|||.|.-|..+|.+|+++|++|.+.++
T Consensus 4 ~yDviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 4 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cccEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 34699999999999999999999999999975
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=82.38 E-value=1.1 Score=35.69 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHH
Q 010652 197 GDMQLISEAYDVLKHVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQ 274 (505)
Q Consensus 197 ~~~~~i~Ea~~l~~~~g~l~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~ 274 (505)
...+++.|+..+++..| ++ .++..+.+......... ...++..++.+.+. -.+|.+.. +.++
T Consensus 36 ~~~~l~~E~~~va~a~g-~~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~ 99 (124)
T d1ks9a1 36 EIMQICEEVAAVIEREG-HHTSAEDLRDYVMQVIDATAE-NISSMLQDIRALRH-----TEIDYING---------FLLR 99 (124)
T ss_dssp HHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHTTT-CCCHHHHHHHTTCC-----CSGGGTHH---------HHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhccCC-CCChHHHHHHcCCc-----chHHHHHH---------HHHH
Confidence 35678899999999987 66 44444444322221111 12234445554332 25566654 5789
Q ss_pred HHHHcCCCcchhHHH
Q 010652 275 QAAELSVAAPTIAAS 289 (505)
Q Consensus 275 ~A~~~gvp~p~i~~A 289 (505)
.|+++|+|+|+....
T Consensus 100 ~a~~~gi~tP~~~~l 114 (124)
T d1ks9a1 100 RARAHGIAVPENTRL 114 (124)
T ss_dssp HHHHHTCCCHHHHHH
T ss_pred HHHHhCCCCcHHHHH
Confidence 999999999998763
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.12 E-value=0.62 Score=36.70 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=27.4
Q ss_pred CcEEEEcccHHHHHHHHHHH---hCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVA---EKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La---~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.+|.-+|..|. .+|.+|+++++.+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 58999999999999996554 5567899998765
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.03 E-value=2.8 Score=33.85 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=67.3
Q ss_pred CCcEEEE-c--cc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLA-G--LA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiI-G--lG---~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+.||.|| | .| .|...|+..|.+.|++|.+++.+... ..++.+...++..+|.|++.
T Consensus 3 ~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~------------------~~~~~~~~~~l~~~d~iiig 64 (148)
T d1vmea1 3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE------------------RPAISEILKDIPDSEALIFG 64 (148)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC------------------CCCHHHHHHHSTTCSEEEEE
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc------------------ccchhHhhhhHHHCCEeEEE
Confidence 3466665 3 23 47778888888999999998765321 23555555666679999999
Q ss_pred cCCC-----chHHHHHHHHhhccCCCCEE-EeCCCCC-hhhHHHHHHHHHHcCCeEEc
Q 010652 80 VKAG-----SPVDQTIAALSEHMSPGDCI-IDGGNEW-YLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 80 vp~~-----~~v~~vl~~l~~~l~~g~ii-Id~st~~-~~~t~~~~~~l~~~gi~~v~ 130 (505)
.|.. ..+...++.+.+.-.+|..+ +-+|-.. ......+.+.+...|..+++
T Consensus 65 spt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v~ 122 (148)
T d1vmea1 65 VSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILS 122 (148)
T ss_dssp ECEETTEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEE
T ss_pred ecccCCccCchHHHHHHHHhhcccCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEEe
Confidence 9864 24666666666543355543 3333222 23445567778888887765
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=81.85 E-value=0.59 Score=44.19 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=27.3
Q ss_pred cEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 8 RIG-LAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~Ig-iIG-lG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
||. |.| .|.+|+.++..|.++||+|++.||.+.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~ 36 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 566 557 799999999999999999999999643
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.81 E-value=0.6 Score=43.49 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=29.3
Q ss_pred CcEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIG-LAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~Ig-iIG-lG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+||+ |.| .|.+|+.++..|.++||+|.+.||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 4785 666 699999999999999999999999653
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.80 E-value=0.51 Score=40.39 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=30.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.-|..-|..+++.|.+|.++++.+
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 589999999999999999999999999998654
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.73 E-value=0.58 Score=43.05 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=29.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+|-|.| .|.+|+.++..|.++||+|++.||...
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 577887 599999999999999999999998653
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=81.72 E-value=0.43 Score=40.06 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=29.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..+|.|||.|..|.-+|..|++.|.+|++..+.+
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 3579999999999999999999999988775554
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.56 E-value=9 Score=31.44 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=47.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeC-----ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNR-----TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr-----~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|++||- .++..+++..+..-|.+|+++.. +++..+.+.+.....+ ..+..+.++++++.. +|+|..-.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~ea~~~---adviy~~~ 80 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESG-GSFELLHDPVKAVKD---ADVIYTDV 80 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT-CEEEEESCHHHHTTT---CSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhccc-ceEEEecCHHHHhhh---ccEEeecc
Confidence 58999995 56778888888899999998854 3333333332211110 146788899999887 99888643
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=81.41 E-value=1.3 Score=37.73 Aligned_cols=95 Identities=16% Similarity=0.210 Sum_probs=57.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEec-----
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILV----- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~v----- 80 (505)
.+|-=||+| .|. .+..|+++|++|+++|.+++.++.+.+.....+-.++.. ..+..+..-. ..-|+|+...
T Consensus 32 grvLDiGcG-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 32 GRTLDLGCG-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD-GEYDFILSTVVMMFL 108 (198)
T ss_dssp CEEEEETCT-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC-CCEEEEEEESCGGGS
T ss_pred CcEEEECCC-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc-ccccEEEEeeeeecC
Confidence 478889998 443 667888999999999999988776654322211002222 2232222111 1247777533
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEe
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIID 105 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId 105 (505)
|. .....+++++...|.+|-+++-
T Consensus 109 ~~-~~~~~~l~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 109 EA-QTIPGLIANMQRCTKPGGYNLI 132 (198)
T ss_dssp CT-THHHHHHHHHHHTEEEEEEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCcEEEE
Confidence 33 3566788888888887765443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.12 E-value=0.46 Score=42.02 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=35.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~ 49 (505)
..+|-.+|+|. | ..+..|++.|++|+++|.+++.++.+.++.
T Consensus 46 ~~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~ 87 (229)
T d2bzga1 46 GLRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTEQ 87 (229)
T ss_dssp SCEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred CCEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence 35799999998 4 668889999999999999999988877653
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=80.98 E-value=0.76 Score=36.03 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=28.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHh---CCCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAE---KGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~---~G~~V~v~dr~~ 39 (505)
..+|.|||.|..|.-+|..|.+ .|.+|+++.+.+
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 3589999999999999976554 588999998875
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.67 E-value=0.68 Score=42.85 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=27.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
++-|.| .|.+|..|+..|.++||+|+++||..
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 455556 59999999999999999999999854
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.27 E-value=0.8 Score=39.58 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=29.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+.|||.|..|...|..+++.|.+|.+.++.+
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~ 36 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHK 36 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 68999999999999999999999999998753
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.21 E-value=5 Score=34.65 Aligned_cols=120 Identities=8% Similarity=0.050 Sum_probs=65.4
Q ss_pred CcEEEEcccHHH--HHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee----CCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMG--QNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH----YTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG--~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~----~s~~e~v~~l~~advIil~v 80 (505)
++|.=+|+|.=+ ..+|.. ...| +|++.|.+++.++.+.+.....+ ++.+. .++..--......|+|+..+
T Consensus 58 ~~VLDlGcG~G~~~~~la~~-v~~g-~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 58 ERVLYLGAASGTTVSHLADI-VDEG-IIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TTTS-EEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CEEEEeCCcCCHHHHHHHHh-ccCC-eEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEEEEecc
Confidence 578889886543 233322 2344 89999999998887765432221 23221 12222111222356666556
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEe-------CCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIID-------GGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId-------~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+.....+.++.++...|.+|-.++- .++..+....+......+.|...++
T Consensus 134 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E 190 (209)
T d1nt2a_ 134 AQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVK 190 (209)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 6666677788888888887765432 1233344433333322345666554
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=80.01 E-value=0.71 Score=43.45 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=28.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeC
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr 37 (505)
.|-|||.|.-|..+|.+|+++|++|.+.++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 477999999999999999999999999986
|