Citrus Sinensis ID: 010659

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----
MLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYCRSRDTLLA
ccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEcccEEEcccccccccccccccccccHHccccEEEEEEEccHHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHcccccccccccEEEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHccccccccccccccccccccccccc
cccccccccccEEcccccccHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccHHHHccHEHHHHEEcccEEEcccHHccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccHHHHHHccccccccccccccccccccccEcc
mlfgsadslpffmarqqipglgiivDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSylgfktgwsgyelptgyfpfgvngmlagSATVFFAFIGFDAVASTAEevknpqrdlplgigTALSICCALYMLVSIVIVGlvpyyemdpdtpissafashgmhWASYVITIGAVTALCSTLmgsilpqprILMAMArdgllppffsdvnkttqvpvksTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILryvppdevpvpstlqssidsVSLQfsqsslsisgkslvddvgtlretepllakkggavsyplIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYaasdlslprLLQLTLCGIGGALLLCGLIVLTsinqdearhnfghaggfmcpfvpllpIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRthsslldavyvpaahvdeiyrssrdsfpathvdgtycrsrdtlla
mlfgsadslPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPllakkggavsyplIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYrssrdsfpathvdgtycrsrdtlla
MLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLqssidsvslqfsqsslsisgkslVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQltlcgiggalllcglivltSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYCRSRDTLLA
********LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD*********************************DVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYC********
MLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEA*H*FGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGR*********************************************
MLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYCRSRDTLLA
MLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPP***************************************************AVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS*L****************************************
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYCRSRDTLLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query505 2.2.26 [Sep-21-2011]
Q9ASS7635 Cationic amino acid trans yes no 0.950 0.755 0.705 0.0
Q8GYB4609 Cationic amino acid trans no no 0.924 0.766 0.676 0.0
Q8W4K3600 Cationic amino acid trans no no 0.893 0.751 0.594 1e-162
B5D5N9657 Low affinity cationic ami yes no 0.782 0.601 0.356 6e-64
P30825629 High affinity cationic am yes no 0.811 0.651 0.327 2e-63
P18581657 Low affinity cationic ami yes no 0.782 0.601 0.349 2e-63
Q09143622 High affinity cationic am no no 0.786 0.638 0.342 2e-63
P52569658 Low affinity cationic ami no no 0.887 0.680 0.336 6e-63
P30823624 High affinity cationic am no no 0.784 0.634 0.317 2e-61
B3TP03654 Low affinity cationic ami no no 0.833 0.643 0.343 3e-61
>sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/492 (70%), Positives = 402/492 (81%), Gaps = 12/492 (2%)

Query: 1   MLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVL 60
           ++FG  D LP  +AR QIPGL I+VDPCAAILV +VTGLLC+GIKEST AQ IVT  NV 
Sbjct: 150 LIFGGEDGLPAILARHQIPGLDIVVDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVC 209

Query: 61  AMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 120
            +LFVI+AGSYLGFKTGW GYELPTG+FPFGV+GM AGSATVFFAFIGFD+VASTAEEV+
Sbjct: 210 VLLFVIVAGSYLGFKTGWPGYELPTGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVR 269

Query: 121 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVIT 180
           NPQRDLP+GIG AL +CC+LYM+VSIVIVGL+PYY MDPDTPISSAFASH M WA Y+IT
Sbjct: 270 NPQRDLPIGIGLALLLCCSLYMMVSIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLIT 329

Query: 181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALA 240
           +GAV ALCS LMG++LPQPRILMAMARDGLLP  FSD+NK TQVPVK+T+ TG+ AA LA
Sbjct: 330 LGAVMALCSALMGALLPQPRILMAMARDGLLPSIFSDINKRTQVPVKATVATGLCAATLA 389

Query: 241 FFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSL 300
           FFMDVS LAGMVSVGTLLAFTMVAISVLILRYVPPDE P+PS+LQ  IDSVS    +++ 
Sbjct: 390 FFMDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEQPLPSSLQERIDSVSFICGETTS 449

Query: 301 SISGKSLVDDVGTLRET-EPLLAKKGGAVSYPLIKQVQD----ILNEENRRTVAGWTIMF 355
           S         VGT   + +PL+      V  PLIK  +     +L+EE RR VAGW+IMF
Sbjct: 450 S-------GHVGTSDSSHQPLIVNNDALVDVPLIKNQEALGCLVLSEETRRIVAGWSIMF 502

Query: 356 TCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMC 415
           TC+G F+L+YAAS LS P L++  LCG+GG LLL GLI L+SI+QD+ARH FGH+GG+MC
Sbjct: 503 TCVGAFLLSYAASSLSFPGLIRYPLCGVGGCLLLAGLIALSSIDQDDARHTFGHSGGYMC 562

Query: 416 PFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAH 475
           PFVPLLPI CILIN+YLL+NLGSATWARVSVWL+IGV+VYVFYGR +SSL +AVYV  AH
Sbjct: 563 PFVPLLPIICILINMYLLVNLGSATWARVSVWLLIGVIVYVFYGRKNSSLANAVYVTTAH 622

Query: 476 VDEIYRSSRDSF 487
            +EIYR    S 
Sbjct: 623 AEEIYREHEGSL 634
Permease involved in the transport of the cationic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 Back     alignment and function description
>sp|B5D5N9|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1 Back     alignment and function description
>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1 Back     alignment and function description
>sp|P18581|CTR2_MOUSE Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=3 Back     alignment and function description
>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|P52569|CTR2_HUMAN Low affinity cationic amino acid transporter 2 OS=Homo sapiens GN=SLC7A2 PE=1 SV=2 Back     alignment and function description
>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
255569446 643 cationic amino acid transporter, putativ 0.962 0.755 0.751 0.0
225439247 639 PREDICTED: high affinity cationic amino 0.958 0.757 0.754 0.0
296085920 619 unnamed protein product [Vitis vinifera] 0.958 0.781 0.754 0.0
224123888 640 cationic amino acid transporter [Populus 0.962 0.759 0.746 0.0
224144852 641 cationic amino acid transporter [Populus 0.960 0.756 0.747 0.0
30696198 635 cationic amino acid transporter 2 [Arabi 0.950 0.755 0.705 0.0
297840681 635 hypothetical protein ARALYDRAFT_475412 [ 0.950 0.755 0.697 0.0
23306414 635 Unknown protein [Arabidopsis thaliana] 0.950 0.755 0.703 0.0
356570337 641 PREDICTED: cationic amino acid transport 0.956 0.753 0.679 0.0
356514041 640 PREDICTED: low affinity cationic amino a 0.954 0.753 0.670 0.0
>gi|255569446|ref|XP_002525690.1| cationic amino acid transporter, putative [Ricinus communis] gi|223534990|gb|EEF36673.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/491 (75%), Positives = 414/491 (84%), Gaps = 5/491 (1%)

Query: 1   MLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVL 60
           +LFG  DSLP F+ARQ IPGL I+VDPCAA+LV+IVTGLLCVGIKEST+ QAIVTT NV 
Sbjct: 153 LLFGGQDSLPAFLARQHIPGLDIVVDPCAAVLVVIVTGLLCVGIKESTLVQAIVTTVNVC 212

Query: 61  AMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 120
           AMLFVII GSYLGFKTGW GYELPTGYF FGV+GMLAGSATVFFA+IGFD+VASTAEEVK
Sbjct: 213 AMLFVIIVGSYLGFKTGWPGYELPTGYFAFGVDGMLAGSATVFFAYIGFDSVASTAEEVK 272

Query: 121 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVIT 180
           NPQRDLP+GIG ALSICC+LYMLVS+VIVGLVPY+ M+PDTPISSAFA HGMHWA+Y+IT
Sbjct: 273 NPQRDLPMGIGFALSICCSLYMLVSVVIVGLVPYFAMNPDTPISSAFAEHGMHWAAYIIT 332

Query: 181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALA 240
            GAV ALCSTLMGS+LPQPRILMAMARDGLLPPFFSDVN++TQ+P+KST+ TG  AA LA
Sbjct: 333 AGAVMALCSTLMGSLLPQPRILMAMARDGLLPPFFSDVNRSTQIPIKSTLTTGAGAAVLA 392

Query: 241 FFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSL 300
           F M+V  LAGMVSVGTLLAFTMVAISVLILRYVPPDEVP PS+LQ +IDSVSL +S    
Sbjct: 393 FCMEVDQLAGMVSVGTLLAFTMVAISVLILRYVPPDEVPFPSSLQDTIDSVSLLYSAKGQ 452

Query: 301 SISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQD----ILNEENRRTVAGWTIMFT 356
             +G+      GT   T PLL K   AV Y +I + +     +L EENRR +AGWTI FT
Sbjct: 453 DTNGEKSEVHAGT-SSTLPLLGKTNAAVDYHVIGKEEAQGSFLLKEENRRKIAGWTIAFT 511

Query: 357 CIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCP 416
           CIG F+LTY+A+DLSLP   + TLCG+GGA+LL GL+VLT I QD+ARH+FGH+GGF+CP
Sbjct: 512 CIGAFLLTYSATDLSLPGPFRFTLCGVGGAVLLFGLVVLTCIEQDDARHSFGHSGGFICP 571

Query: 417 FVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHV 476
            VPLLPI CILIN YLLINLG+ATW RVSVWLIIGV VY FYGR HSSLL AVYVPAAH 
Sbjct: 572 LVPLLPIICILINTYLLINLGAATWTRVSVWLIIGVFVYAFYGRAHSSLLHAVYVPAAHA 631

Query: 477 DEIYRSSRDSF 487
           DEIYRSS DS 
Sbjct: 632 DEIYRSSGDSL 642

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439247|ref|XP_002271330.1| PREDICTED: high affinity cationic amino acid transporter 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085920|emb|CBI31244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224123888|ref|XP_002319189.1| cationic amino acid transporter [Populus trichocarpa] gi|222857565|gb|EEE95112.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224144852|ref|XP_002325438.1| cationic amino acid transporter [Populus trichocarpa] gi|222862313|gb|EEE99819.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30696198|ref|NP_849822.1| cationic amino acid transporter 2 [Arabidopsis thaliana] gi|75308011|sp|Q9ASS7.1|CAAT2_ARATH RecName: Full=Cationic amino acid transporter 2, vacuolar gi|13605811|gb|AAK32891.1|AF367304_1 AT5g36940/MLF18_60 [Arabidopsis thaliana] gi|209529757|gb|ACI49773.1| At1g58030 [Arabidopsis thaliana] gi|332195367|gb|AEE33488.1| cationic amino acid transporter 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297840681|ref|XP_002888222.1| hypothetical protein ARALYDRAFT_475412 [Arabidopsis lyrata subsp. lyrata] gi|297334063|gb|EFH64481.1| hypothetical protein ARALYDRAFT_475412 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|23306414|gb|AAN17434.1| Unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356570337|ref|XP_003553346.1| PREDICTED: cationic amino acid transporter 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356514041|ref|XP_003525716.1| PREDICTED: low affinity cationic amino acid transporter 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
TAIR|locus:2196245635 CAT2 "cationic amino acid tran 0.948 0.754 0.668 1.1e-172
TAIR|locus:2167462609 CAT3 "cationic amino acid tran 0.562 0.466 0.768 6.4e-166
ZFIN|ZDB-GENE-041212-5641 slc7a2 "solute carrier family 0.374 0.294 0.476 1.8e-71
UNIPROTKB|F1P388624 SLC7A1 "Uncharacterized protei 0.374 0.302 0.460 7.6e-71
UNIPROTKB|P30825629 SLC7A1 "High affinity cationic 0.374 0.300 0.455 5.2e-70
UNIPROTKB|P52569658 SLC7A2 "Low affinity cationic 0.374 0.287 0.465 5.2e-70
ZFIN|ZDB-GENE-080219-39613 zgc:175280 "zgc:175280" [Danio 0.364 0.300 0.476 8.5e-70
UNIPROTKB|B3TP03654 SLC7A2 "Low affinity cationic 0.407 0.314 0.451 1.1e-69
UNIPROTKB|E2QU34629 SLC7A1 "Uncharacterized protei 0.374 0.300 0.444 1.1e-69
RGD|68387657 Slc7a2 "solute carrier family 0.372 0.286 0.481 1.1e-69
TAIR|locus:2196245 CAT2 "cationic amino acid transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1678 (595.7 bits), Expect = 1.1e-172, P = 1.1e-172
 Identities = 328/491 (66%), Positives = 378/491 (76%)

Query:     1 MLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVL 60
             ++FG  D LP  +AR QIPGL I+VDPCAAILV +VTGLLC+GIKEST AQ IVT  NV 
Sbjct:   150 LIFGGEDGLPAILARHQIPGLDIVVDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVC 209

Query:    61 AMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 120
              +LFVI+AGSYLGFKTGW GYELPTG+FPFGV+GM AGSATVFFAFIGFD+VASTAEEV+
Sbjct:   210 VLLFVIVAGSYLGFKTGWPGYELPTGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVR 269

Query:   121 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVIT 180
             NPQRDLP+GIG AL +CC+LYM+VSIVIVGL+PYY MDPDTPISSAFASH M WA Y+IT
Sbjct:   270 NPQRDLPIGIGLALLLCCSLYMMVSIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLIT 329

Query:   181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALA 240
             +GAV ALCS LMG++LPQPRILMAMARDGLLP  FSD+NK TQVPVK+T+ TG+ AA LA
Sbjct:   330 LGAVMALCSALMGALLPQPRILMAMARDGLLPSIFSDINKRTQVPVKATVATGLCAATLA 389

Query:   241 FFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLXXXXXXXXXXXXXXXX 300
             FFMDVS LAGMVSVGTLLAFTMVAISVLILRYVPPDE P+PS+L                
Sbjct:   390 FFMDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEQPLPSSLQERIDSVSFICGETTS 449

Query:   301 XXXXXXXVDDVGTLRET-EPLLAKKGGAVSYPLIKQVQD----ILNEENRRTVAGWTIMF 355
                       VGT   + +PL+      V  PLIK  +     +L+EE RR VAGW+IMF
Sbjct:   450 SGH-------VGTSDSSHQPLIVNNDALVDVPLIKNQEALGCLVLSEETRRIVAGWSIMF 502

Query:   356 TCIGVFVLTYAASDLSLPRLLQXXXXXXXXXXXXXXXXXXXSINQDEARHNFGHAGGFMC 415
             TC+G F+L+YAAS LS P L++                   SI+QD+ARH FGH+GG+MC
Sbjct:   503 TCVGAFLLSYAASSLSFPGLIRYPLCGVGGCLLLAGLIALSSIDQDDARHTFGHSGGYMC 562

Query:   416 PFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAH 475
             PFVPLLPI CILIN+YLL+NLGSATWARVSVWL+IGV+VYVFYGR +SSL +AVYV  AH
Sbjct:   563 PFVPLLPIICILINMYLLVNLGSATWARVSVWLLIGVIVYVFYGRKNSSLANAVYVTTAH 622

Query:   476 VDEIYRSSRDS 486
              +EIYR    S
Sbjct:   623 AEEIYREHEGS 633
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0006810 "transport" evidence=IEA;ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0016020 "membrane" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-5 slc7a2 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P388 SLC7A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P30825 SLC7A1 "High affinity cationic amino acid transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P52569 SLC7A2 "Low affinity cationic amino acid transporter 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080219-39 zgc:175280 "zgc:175280" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B3TP03 SLC7A2 "Low affinity cationic amino acid transporter 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QU34 SLC7A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|68387 Slc7a2 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ASS7CAAT2_ARATHNo assigned EC number0.70520.95040.7559yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 7e-95
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 2e-48
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 3e-39
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 2e-29
pfam1390651 pfam13906, AA_permease_C, C-terminus of AA_permeas 7e-21
pfam00324473 pfam00324, AA_permease, Amino acid permease 7e-19
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 4e-18
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 4e-18
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 4e-16
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 3e-15
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 7e-15
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 1e-12
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 3e-12
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 1e-10
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 2e-10
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 1e-09
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 2e-09
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 3e-09
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 7e-09
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 2e-08
PRK10655438 PRK10655, potE, putrescine transporter; Provisiona 3e-08
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 3e-08
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 8e-08
PRK10580457 PRK10580, proY, putative proline-specific permease 9e-08
PRK10836489 PRK10836, PRK10836, lysine transporter; Provisiona 3e-07
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 1e-06
PRK10746461 PRK10746, PRK10746, putative transport protein Yif 3e-06
TIGR00910507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 1e-05
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 1e-05
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 2e-05
TIGR04299430 TIGR04299, antiport_PotE, putrescine-ornithine ant 4e-04
TIGR00930 953 TIGR00930, 2a30, K-Cl cotransporter 4e-04
PRK10435435 PRK10435, cadB, lysine/cadaverine antiporter; Prov 5e-04
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 7e-04
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 0.002
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  298 bits (764), Expect = 7e-95
 Identities = 163/454 (35%), Positives = 235/454 (51%), Gaps = 62/454 (13%)

Query: 19  PGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGW 78
            GL    D  A  L+L++  LL  G+KES     I T  N+L +LFVIIAG        W
Sbjct: 155 DGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANW 214

Query: 79  SGYELP--TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSI 136
           S  E     G+ P+G  G+L+G+AT FFAFIGFDA+A+T EEVKNPQR +P+GI T+L +
Sbjct: 215 SITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLV 274

Query: 137 CCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSIL 196
           C   Y L+S  +  ++PYY +DPD P   AF   G   A Y++ +GA+  + ++L+G + 
Sbjct: 275 CFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMF 334

Query: 197 PQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGT 256
           P PR++ AMARDGLL  + + +N  T+ P+ +T+V+G +AA +AF  D+ AL  ++S+GT
Sbjct: 335 PLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGT 394

Query: 257 LLAFTMVAISVLILRYVP------PDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDD 310
           LLA+++VA  VLILRY P        +     TL S +   S   SQS    S ++L   
Sbjct: 395 LLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSE-GFSLRTLF-- 451

Query: 311 VGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMF-TCIGVFVLTYAASD 369
                                LI  +  +       T  G   +      + +LT     
Sbjct: 452 -------------------SGLILGLSIL-------TTYGRAAIAEEAWSIALLT----- 480

Query: 370 LSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILIN 429
                            L+L  L+VLT   Q + +        F  P VP LP   ILIN
Sbjct: 481 ---------------LFLVLFLLVVLTIWRQPQNKQKV----AFKVPLVPFLPALSILIN 521

Query: 430 VYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS 463
           ++L++ L + TW R ++W+ IG L+Y  YG  HS
Sbjct: 522 IFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHS 555

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter Back     alignment and domain information
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 505
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 99.97
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.97
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.97
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.96
PRK15238496 inner membrane transporter YjeM; Provisional 99.96
KOG1289550 consensus Amino acid transporters [Amino acid tran 99.95
PF1390651 AA_permease_C: C-terminus of AA_permease 99.8
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.78
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.74
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.71
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.46
KOG2083643 consensus Na+/K+ symporter [Inorganic ion transpor 99.24
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.04
TIGR00814397 stp serine transporter. The HAAAP family includes 98.85
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 98.7
PRK10483414 tryptophan permease; Provisional 98.44
PRK09664415 tryptophan permease TnaB; Provisional 98.36
PRK15132403 tyrosine transporter TyrP; Provisional 98.34
COG0814415 SdaC Amino acid permeases [Amino acid transport an 98.32
PRK13629443 threonine/serine transporter TdcC; Provisional 98.01
PF03845320 Spore_permease: Spore germination protein; InterPr 97.79
PHA02764399 hypothetical protein; Provisional 97.54
COG3949349 Uncharacterized membrane protein [Function unknown 97.15
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.92
PLN03074473 auxin influx permease; Provisional 96.77
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 96.73
KOG1304449 consensus Amino acid transporters [Amino acid tran 96.66
PRK15433439 branched-chain amino acid transport system 2 carri 96.41
PRK11375484 allantoin permease; Provisional 96.06
KOG1303437 consensus Amino acid transporters [Amino acid tran 96.01
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.84
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 95.56
COG1457442 CodB Purine-cytosine permease and related proteins 95.32
PTZ00206467 amino acid transporter; Provisional 95.17
COG0733439 Na+-dependent transporters of the SNF family [Gene 95.14
PLN00151852 potassium transporter; Provisional 94.8
PLN00149779 potassium transporter; Provisional 94.71
PLN00148 785 potassium transporter; Provisional 94.62
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 94.61
TIGR00794688 kup potassium uptake protein. Proteins of the KUP 94.31
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 94.27
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 94.0
PLN00150779 potassium ion transporter family protein; Provisio 93.96
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 93.92
PRK10745622 trkD potassium transport protein Kup; Provisional 93.81
KOG1286554 consensus Amino acid transporters [Amino acid tran 93.37
TIGR00813407 sss transporter, SSS family. have different number 93.02
TIGR00835425 agcS amino acid carrier protein. Members of the AG 92.85
PRK09442483 panF sodium/panthothenate symporter; Provisional 92.66
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 92.25
PRK11017404 codB cytosine permease; Provisional 91.75
KOG1305411 consensus Amino acid transporter protein [Amino ac 91.4
COG0591493 PutP Na+/proline symporter [Amino acid transport a 90.29
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 88.92
PRK10484523 putative transporter; Provisional 87.21
PRK15419502 proline:sodium symporter PutP; Provisional 86.99
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 84.99
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 84.59
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 82.9
COG3158627 Kup K+ transporter [Inorganic ion transport and me 82.5
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 81.87
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=4.8e-57  Score=490.20  Aligned_cols=396  Identities=38%  Similarity=0.660  Sum_probs=309.9

Q ss_pred             cchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCc--CCCCCCCCchhHHHHHHHH
Q 010659           23 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGY--ELPTGYFPFGVNGMLAGSA  100 (505)
Q Consensus        23 ~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~--~~~~~~~p~g~~gil~g~~  100 (505)
                      .+.++++++++++++.+|++|+|.++|+|++++++|+++++++++.|+.+.+.+||...  .+.+++.|+|+.|++.|+.
T Consensus       159 ~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~  238 (557)
T TIGR00906       159 EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAA  238 (557)
T ss_pred             ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999887766666521  2334678889999999999


Q ss_pred             HHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHHhchhHHHHHHH
Q 010659          101 TVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVIT  180 (505)
Q Consensus       101 ~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~~g~~~~~~iv~  180 (505)
                      .++|+|.|||.+++++||+|||+||+|||++.++.+++++|++.++++++++|+++++.++|+..+++..+.+++..++.
T Consensus       239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~  318 (557)
T TIGR00906       239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVA  318 (557)
T ss_pred             HHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 010659          181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAF  260 (505)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~li~y  260 (505)
                      ++++.+.+++.++.+++++|++|+|||||.+|++|+|+|+|+++|++|+++.++++.++.++.+++.+.++.+++++++|
T Consensus       319 ~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y  398 (557)
T TIGR00906       319 VGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAY  398 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCcccccccccccccc
Q 010659          261 TMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDIL  340 (505)
Q Consensus       261 ~~v~~a~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (505)
                      .+++++++++|++++...+ +              .+|    ++|+++.      ++.|+.+.    ..++      . .
T Consensus       399 ~lv~~~~l~lR~~~~~~~~-~--------------~~~----~~~~~~~------~~~~~~~~----~~~~------~-~  442 (557)
T TIGR00906       399 SLVAACVLILRYQPGLVYG-Q--------------AKD----TDEKDTL------DSWVPFTS----KSES------Q-S  442 (557)
T ss_pred             HHHHHHHHHhhcccccccc-c--------------ccc----ccccccc------cccccccc----cccc------c-c
Confidence            9999999999998654210 0              000    0110000      00011000    0000      0 0


Q ss_pred             cccccccchhhhHHHHHHHHHHHH-HHhhhcccchhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCcccccccc
Q 010659          341 NEENRRTVAGWTIMFTCIGVFVLT-YAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVP  419 (505)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P  419 (505)
                      +....+.    .++..+++.++.. ........ +++.+.+.++.+++.++.+..+..++|.+      .+++||||++|
T Consensus       443 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~f~~p~~p  511 (557)
T TIGR00906       443 EGFSLRT----LFSGLILGLSILTTYGRAAIAE-EAWSIALLTLFLVLFLLVVLTIWRQPQNK------QKVAFKVPLVP  511 (557)
T ss_pred             cchhHHH----HHHHHHHHHHHHHHhhhhhccc-cchhHHHHHHHHHHHHHHHHHHhcCCCCC------CCCCCCCCCch
Confidence            0000000    0111112221111 11111112 33344444444444444444444444432      35799999999


Q ss_pred             hhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhhccccccc
Q 010659          420 LLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSL  465 (505)
Q Consensus       420 ~~P~~~i~~n~~l~~~l~~~t~~~~~vw~~iG~~iY~~yg~~~s~~  465 (505)
                      ++|++++++|+|||.+|++.||+||.+|+++|+++||+||+|||++
T Consensus       512 ~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~  557 (557)
T TIGR00906       512 FLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE  557 (557)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence            9999999999999999999999999999999999999999999974

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 5e-12
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 5e-12
3ncy_A445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 8e-09
3l1l_A445 Structure Of Arg-Bound Escherichia Coli Adic Length 4e-08
3ob6_A445 Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo 5e-08
3lrb_A445 Structure Of E. Coli Adic Length = 445 5e-08
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 101/192 (52%), Gaps = 8/192 (4%)
Query: 89  PFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVI 148
           P  V+GM+  SA  F +++GF  + + +E ++NP++++P  I  ++ I   +Y+ V+I  
Sbjct: 184 PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISA 243
Query: 149 VGLVPYYEMDPDTPISSAFASHGM--HWASYVITIGAVTALCSTLMGSILPQPRILMAMA 206
           +G +P  E+   +  + A A+     +    +I+IGA+ ++ S +  +I     +  ++A
Sbjct: 244 IGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLA 303
Query: 207 RDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAIS 266
           +DG LP FF       +V  KST    I +A    F  +  + G+ S+ T   F ++ + 
Sbjct: 304 KDGELPEFFER-----KVWFKSTEGLYITSALGVLFALLFNMEGVASI-TSAVFMVIYLF 357
Query: 267 VLILRYVPPDEV 278
           V++  Y+  DEV
Sbjct: 358 VILSHYILIDEV 369
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 Back     alignment and structure
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 4e-81
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 9e-10
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 5e-55
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 3e-05
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 5e-50
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  258 bits (661), Expect = 4e-81
 Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 9/267 (3%)

Query: 17  QIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT 76
             P     +      +V   T L   G K    A+  +    +L +   I AG      +
Sbjct: 117 NAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPS 176

Query: 77  GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSI 136
                       P  V+GM+  SA  F +++GF  + + +E ++NP++++P  I  ++ I
Sbjct: 177 YVI-----PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILI 231

Query: 137 CCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGS 194
              +Y+ V+I  +G +P  E+    +  ++ A      +    +I+IGA+ ++ S +  +
Sbjct: 232 VMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNAT 291

Query: 195 ILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSV 254
           I     +  ++A+DG LP FF           +   +T  +    A   ++  +A + S 
Sbjct: 292 IYGGANVAYSLAKDGELPEFFERKVWFK--STEGLYITSALGVLFALLFNMEGVASITSA 349

Query: 255 GTLLAFTMVAISVLILRYVPPDEVPVP 281
             ++ +  V +S  IL         + 
Sbjct: 350 VFMVIYLFVILSHYILIDEVGGRKEIV 376
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query505
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 97.73
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 96.73
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 94.9
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 91.02
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=1.1e-36  Score=320.97  Aligned_cols=299  Identities=20%  Similarity=0.273  Sum_probs=257.2

Q ss_pred             hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc---hhHHHHHHHHH
Q 010659           25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---GVNGMLAGSAT  101 (505)
Q Consensus        25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~---g~~gil~g~~~  101 (505)
                      ..+++++++++++.+|++|+|..+++|.+++.++++.++++++.++...+.+++.+     ++.+.   ++.+++.++..
T Consensus       125 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  199 (445)
T 3l1l_A          125 LTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA-----AWNVSGLGTFGAIQSTLNV  199 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCC-----C-----------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhccc-----ccCccCCccHHHHHHHHHH
Confidence            45678888899999999999999999999999999999888888776554433321     12222   35678899999


Q ss_pred             HHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC-CCCCcHHHHHHHhchhHHHHHHH
Q 010659          102 VFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVIT  180 (505)
Q Consensus       102 ~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l-~~~~p~~~a~~~~g~~~~~~iv~  180 (505)
                      .+|+|.|+|.+++++||+|||+|++||+++.+..+++++|++.+++.....|++++ +.++|+.+++++.+++++..++.
T Consensus       200 ~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~  279 (445)
T 3l1l_A          200 TLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVS  279 (445)
T ss_dssp             HHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998876 45679999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh-------cHHHHHHHHH
Q 010659          181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVS  253 (505)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~-------~~~~l~~l~s  253 (505)
                      ++.+++.+++.++.+++.+|++|+|||||.+|++|+|+|++ ++|++|++++++++.++.+..       .++.+.++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  358 (445)
T 3l1l_A          280 FCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV  358 (445)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999976 999999999999887766442       3678999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccc
Q 010659          254 VGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLI  333 (505)
Q Consensus       254 ~~~li~y~~v~~a~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (505)
                      ++.++.|.+.+++++++|+|+|  +|                                                      
T Consensus       359 ~~~~~~y~~~~~~~~~~r~~~~--~~------------------------------------------------------  382 (445)
T 3l1l_A          359 IFTLVPYLYTCAALLLLGHGHF--GK------------------------------------------------------  382 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSS--GG------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhcCc--cc------------------------------------------------------
Confidence            9999999999999999998765  11                                                      


Q ss_pred             ccccccccccccccchhhhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCcc
Q 010659          334 KQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGF  413 (505)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~f  413 (505)
                                                                                                      
T Consensus       383 --------------------------------------------------------------------------------  382 (445)
T 3l1l_A          383 --------------------------------------------------------------------------------  382 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccchhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhhccccccc
Q 010659          414 MCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSL  465 (505)
Q Consensus       414 ~~P~~P~~P~~~i~~n~~l~~~l~~~t~~~~~vw~~iG~~iY~~yg~~~s~~  465 (505)
                      |.|..|++|.++.+.+.+++...++.++....+|+++|+++|+.+.+|+++.
T Consensus       383 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~  434 (445)
T 3l1l_A          383 ARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKN  434 (445)
T ss_dssp             GCTTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            2245578999999999999999999999999999999999999887766543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query505
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 82.77
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.77  E-value=19  Score=35.09  Aligned_cols=38  Identities=32%  Similarity=0.527  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhh-hhhhhHhhhhhhhcCcCCchhHHHHHH
Q 010659           95 MLAGSATVFFAF-IGFDAVASTAEEVKNPQRDLPLGIGTA  133 (505)
Q Consensus        95 il~g~~~~~faf-~G~e~i~~~aeE~knP~k~iPrai~~s  133 (505)
                      +..++..++|++ .|+-...+++.=.|+ +.|+.|-.+..
T Consensus       240 W~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~~v  278 (509)
T d2a65a1         240 WIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTA  278 (509)
T ss_dssp             HHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHH
T ss_pred             HHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccceEE
Confidence            456777888887 677777777665554 45666644333