Citrus Sinensis ID: 010667

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
Protein Sequence
MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTSHHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEVHEEPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENKLEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVVVEPESLCSQLMEVDDTVQLRRTSAEPDPDDSEAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCIAY
Secondary Structure (PSIPRED)
ccccccccccHHHHHcccEEEccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccHHHHHHccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHcccHHHHHHHHHHccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHccccHHHHHHHcccEEEEEEEEccccccccccccEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccEccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHcccccccccccEEEEEccccccccccccEccccccHccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccEEcccccccccEEccccccEEEccccccccccHHHHccccccccccccccccccccccccccccHHHHEccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mhmlaadpGIIAIMNKHRWRVGimtelapvgyvgvspkcvlgfnknhgeeISLRLRTDDLKGFRKYESIKKTLLHELAHMVYsehdanfygldkQLNQEAVALDwtksrghtlsgvrhtshheddlfvgdsrsfsqklggniSDQLASARASSVAAAYRRLANASAnslgvsevheepdpddsglimlgeshhtvsaakgsldiespsrdqwkghepdpdddpgyenklepdpddsqdgeplepenysdpemvqqvspkklaatnpyeepdpddsetawksgvvvepeslcsqlmevddTVQLrrtsaepdpddseAELKIKIVndttedqghlykaqrepdpdelLANEvvqqepdpddnlvQLQEIssmkidepdpddqelrsIQDTVTVVCSRLQKAIEMLRAevsplestTVLQTLCKIIRNviehpdetkyKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCIAY
Flexible Loop (DISEMBL)
MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGfnknhgeeislrlrtddlkgFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVrhtshheddlfvGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASanslgvsevHEEPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGhepdpdddpgyENKLEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVVVEPESLCSQLMEVDDTVQLRRtsaepdpddseaelkikivndttedQGHLYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMkidepdpddqelrsIQDTVTVVCSRLQKAIEMlraevsplesttVLQTLCKIIRnviehpdetkykrlrkanpiiQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAkssletciay
Low Complexity Region (SEG)
MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTSHHEDDLFVGDSRSFSQKLGGNISDQLasarassvaaayrrlanasansLGVSEVHEEPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENKLEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVVVEPESLCSQLMEVDDTVQLRRTSAEPDPDDSEAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCIAY
Disordered region (IsUnstruct)
******DPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTL********************************************************************************************************************************************************************************************************************************************************************************IQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCI**
Disordered Region (DISOPRED)
*HMLAA*PGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTSH********************************************************************************************************************************************************************************************************************************************************************ELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLE*****
Disordered Region (DISEMBL)
MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTSHHEDDLFVGDSRSFSQKLGGNIS***********AAAYRRLANASA**************DDSGLIMLGESHHTVSAAKGSLDIE*****************PGYENKLE*************PENYSDPEMVQQVSPKKLAAT************TAWKSGVVVEPESLCSQLMEVDDTVQLR***********EAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCIAY
Disordered Region (DISPRO)
MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHT**************************************************************DSGLIMLGES******************************************************************************************GVVVEPESLCSQLMEVDDTVQLRRTSAEPDPDDSE*****************************LLANEVVQQ****DDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCIAY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTSHHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEVHEEPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENKLEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVVVEPESLCSQLMEVDDTVQLRRTSAEPDPDDSEAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCIAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	504	2.2.26 [Sep-21-2011]
O94580	282	Ubiquitin and WLM domain-	yes	no	0.295	0.528	0.369	2e-20
P38838	269	DNA damage response prote	yes	no	0.162	0.304	0.358	7e-06

>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=4 SV=1

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 85/165 (51%), Gaps = 16/165 (9%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           +  L  D GI  IM+ HRW V +++E+ P  +     K  LG N N G  I LRLRTD  
Sbjct: 129 LERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSK-TLGLNHNQGAHIELRLRTDRY 187

Query: 61  KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
            GFR Y+++K TL+HEL H V+ EHD++F+ L +QL +EA A D     G          
Sbjct: 188 DGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGS--------- 238

Query: 121 HHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANAS 165
                 +V D  S++ +   +  DQ    R   +AAA RR  + S
Sbjct: 239 ------YVSDRASYTPQQDNDDEDQKNHRRDLLLAAAERRKQSGS 277

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 13  IMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLR--TDDLKGFRKYESIK 70
           +M ++ ++V  + E  P        + +LG N NHG +I LRLR  TD+ + F   E I 
Sbjct: 58  LMKENHFKVTNLVEFYP------RDQRLLGMNVNHGSKIMLRLRCSTDEFQ-FLPMECIM 110

Query: 71  KTLLHELAHMVYSEHDANFYG-LDKQLNQEAV 101
            T+LHEL H ++  HD  FY  LD+ + ++ V
Sbjct: 111 GTMLHELTHNLFGPHDKKFYNKLDELIGRQWV 142

Involved in DNA damage response and processing of stalled or collapsed replication forks. May be involved in a sumoylation pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
225447189	713	PREDICTED: uncharacterized protein LOC10	0.990	0.699	0.633	1e-171
224129082	618	predicted protein [Populus trichocarpa]	0.902	0.736	0.612	1e-163
297739236	606	unnamed protein product [Vitis vinifera]	0.910	0.757	0.605	1e-160
449518252	690	PREDICTED: uncharacterized protein LOC10	0.962	0.702	0.539	1e-138
449450882	690	PREDICTED: uncharacterized protein LOC10	0.962	0.702	0.539	1e-138
357462523	666	Ubiquitin and WLM domain-containing prot	0.900	0.681	0.542	1e-137
255576119	594	conserved hypothetical protein [Ricinus	0.837	0.710	0.548	1e-133
357469919	652	Ubiquitin and WLM domain-containing prot	0.867	0.670	0.531	1e-133
115477128	669	Os08g0500800 [Oryza sativa Japonica Grou	0.928	0.699	0.5	1e-125
242082325	656	hypothetical protein SORBIDRAFT_07g02825	0.910	0.699	0.5	1e-120

>gi|225447189|ref|XP_002271945.1| PREDICTED: uncharacterized protein LOC100248207 [Vitis vinifera]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 340/537 (63%), Positives = 394/537 (73%), Gaps = 38/537 (7%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLAADPGI+AIMNKHRWRVGIMTE+APVGYVGVSPKC+LG NKNHGEEISLRLRTDDL
Sbjct: 182 MHMLAADPGIVAIMNKHRWRVGIMTEMAPVGYVGVSPKCILGVNKNHGEEISLRLRTDDL 241

Query: 61  KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
           KGFRKYESIKKTLLHELAHMVYSEHDANFY LDKQLNQEA +LDWTKSR HTLSG +H+ 
Sbjct: 242 KGFRKYESIKKTLLHELAHMVYSEHDANFYALDKQLNQEAASLDWTKSRSHTLSGHQHSE 301

Query: 121 HHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEVHEEPDP 180
           H+E + + GDS  FSQKLGG +SDQL SARASSVAAAY RLANAS N+ GV+E+HEEPDP
Sbjct: 302 HYEGEFYSGDSSIFSQKLGGKMSDQLESARASSVAAAYLRLANASTNNTGVAELHEEPDP 361

Query: 181 DDSGLIMLGESHHTVSAAKGSLDIESPSRDQWK-GHEPDPDDDPGYENKLEPDPDDSQDG 239
           DDS   M  E     +  K +LDI +P+R Q K   EPDPDD    + K+EP P   + G
Sbjct: 362 DDSESNMHEEYD---ALYKKTLDINNPNRAQSKVDDEPDPDDFSDNQRKIEPCP-HYESG 417

Query: 240 EPLEPENYS-----------DPEMV--QQVSP-----KKLAATNPYEEPDPDDSETAWKS 281
             +E E YS           DP+ V  QQ  P     +KLA+T   EEPDPDD E + K 
Sbjct: 418 GFMESELYSGINESKVIFEPDPDDVEMQQFVPHSRTDEKLASTKTSEEPDPDDLEVSVKQ 477

Query: 282 GVVVEPESLCSQLME-VDDTVQLRRTSAEPDPDDSEAELK-------------IKIVNDT 327
            +VVEPE   SQL++ +D  VQ+ +T  EPDPDDSE +                 +V  T
Sbjct: 478 HLVVEPEPENSQLLKTLDSKVQMMKTLDEPDPDDSEVKRNGLGCGNISRLDHGNSLVMKT 537

Query: 328 TEDQGHLYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQ 387
            EDQ    K  +EPDPD+  AN V+  EPDPDDNLV   + S M  DEPDPDD+EL+ IQ
Sbjct: 538 MEDQCPQRKGYKEPDPDDSQANGVM-AEPDPDDNLVHPLDTSIMHTDEPDPDDEELQRIQ 596

Query: 388 DTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQ 447
           D VTVVC+RLQKAIEMLR+EV+  ++  VLQTL KIIRN+IEHPDE K++RLRKANP  Q
Sbjct: 597 DPVTVVCNRLQKAIEMLRSEVNATQAAIVLQTLFKIIRNLIEHPDEIKFRRLRKANPAFQ 656

Query: 448 RSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCIAY 504
           R++ANYKAAME+LFL+GFNEDVV  EIGK ETYLV+KRND  LLWL KSSLET +A+
Sbjct: 657 RNIANYKAAMEVLFLIGFNEDVVSSEIGKVETYLVMKRNDPGLLWLVKSSLETRMAH 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129082|ref|XP_002320496.1| predicted protein [Populus trichocarpa] gi|222861269|gb|EEE98811.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 310/506 (61%), Positives = 369/506 (72%), Gaps = 51/506 (10%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLAADPGI+AIMNKHRWR+GIMTE+APVGYVGVSPKC+LGFNKNHGEEISLRLRTDDL
Sbjct: 161 MHMLAADPGIVAIMNKHRWRIGIMTEMAPVGYVGVSPKCILGFNKNHGEEISLRLRTDDL 220

Query: 61  KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
           KGFRKYESIKKTLLHELAHM+YSEHDANFY LDKQLNQEA +LDWTKSRGHTLSGV H  
Sbjct: 221 KGFRKYESIKKTLLHELAHMLYSEHDANFYALDKQLNQEAASLDWTKSRGHTLSGVDHQD 280

Query: 121 HHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEVHEEPDP 180
              +D +V DSRS S KLGGN+S+QLASARASSVAAAY RLA+AS+NSLG SEVHEEPDP
Sbjct: 281 QDSEDFYVSDSRSSSVKLGGNVSNQLASARASSVAAAYHRLADASSNSLGASEVHEEPDP 340

Query: 181 DDSGLIMLGESHHTVSAAKGSLDIESPSRDQWK-GHEPDPDDDPGYENKLEPDPDDSQDG 239
           DDS   M  E        KG +DIE+  + QWK  H+PDPD+ P  +NK EPDPDDSQ  
Sbjct: 341 DDSIFNMHKEPGAKGQVEKGKVDIENQHKSQWKPHHQPDPDEHPFNQNKNEPDPDDSQGN 400

Query: 240 --EPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVVVEPESLCSQLMEV 297
             E ++  N +  E++  ++   + A   ++EPDPDD                C     +
Sbjct: 401 HHEVMDILNGNHHEVMDTLN-GGIRADKTFDEPDPDD----------------CLVTENI 443

Query: 298 DDTVQLRRTSAEPDPDDSEAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEVVQQEPD 357
           +D + L++   EPDPD+SE                                N+VVQ EPD
Sbjct: 444 EDHLHLKKAYKEPDPDESE-------------------------------TNQVVQAEPD 472

Query: 358 PDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVL 417
           PDD+L    E+S M+IDEPDPDD+ELR IQD V+VVCSRLQKA E LRAE++  E+   L
Sbjct: 473 PDDDLAASDEVSRMQIDEPDPDDEELRRIQDPVSVVCSRLQKATETLRAELNSTEAAAAL 532

Query: 418 QTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKA 477
           QTL KIIRNVIEHPD++K+KRLRKANPIIQ++VA+++AA+EI+ +VGF+E+V  DE GKA
Sbjct: 533 QTLFKIIRNVIEHPDQSKFKRLRKANPIIQKNVASHQAAVEIVHVVGFSEEVSYDETGKA 592

Query: 478 ETYLVLKRNDLALLWLAKSSLETCIA 503
           +TYLVLKRND  LLWLAKS+LE C+A
Sbjct: 593 DTYLVLKRNDPGLLWLAKSTLEACMA 618

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739236|emb|CBI28887.3| unnamed protein product [Vitis vinifera]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 324/535 (60%), Positives = 372/535 (69%), Gaps = 76/535 (14%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLAADPGI+AIMNKHRWRVGIMTE+APVGYVGVSPKC+LG NKNHGEEISLRLRTDDL
Sbjct: 117 MHMLAADPGIVAIMNKHRWRVGIMTEMAPVGYVGVSPKCILGVNKNHGEEISLRLRTDDL 176

Query: 61  KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
           KGFRKYESIKKTLLHELAHMVYSEHDANFY LDKQLNQEA +LDWTKSR HTLSG +H+ 
Sbjct: 177 KGFRKYESIKKTLLHELAHMVYSEHDANFYALDKQLNQEAASLDWTKSRSHTLSGHQHSE 236

Query: 121 HHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEVHEEPDP 180
           H+E + + GDS  FSQKLGG +SDQL SARASSVAAAY RLANAS N+ GV+E+HEEPDP
Sbjct: 237 HYEGEFYSGDSSIFSQKLGGKMSDQLESARASSVAAAYLRLANASTNNTGVAELHEEPDP 296

Query: 181 DDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENKLEPDPDDSQDGE 240
           DD             S A+  +D            EPDPDD    + K+EP P   + G 
Sbjct: 297 DD-------------SEAQSKVD-----------DEPDPDDFSDNQRKIEPCP-HYESGG 331

Query: 241 PLEPENYS-----------DPEMV--QQVSP-----KKLAATNPYEEPDPDDSETAWKSG 282
            +E E YS           DP+ V  QQ  P     +KLA+T   EEPDPDD ET     
Sbjct: 332 FMESELYSGINESKVIFEPDPDDVEMQQFVPHSRTDEKLASTKTSEEPDPDDLET----- 386

Query: 283 VVVEPESLCSQLMEVDDTVQLRRTSAEPDPDDSEAELK-------------IKIVNDTTE 329
                         +D  VQ+ +T  EPDPDDSE +                 +V  T E
Sbjct: 387 --------------LDSKVQMMKTLDEPDPDDSEVKRNGLGCGNISRLDHGNSLVMKTME 432

Query: 330 DQGHLYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDT 389
           DQ    K  +EPDPD+  AN V+  EPDPDDNLV   + S M  DEPDPDD+EL+ IQD 
Sbjct: 433 DQCPQRKGYKEPDPDDSQANGVM-AEPDPDDNLVHPLDTSIMHTDEPDPDDEELQRIQDP 491

Query: 390 VTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRS 449
           VTVVC+RLQKAIEMLR+EV+  ++  VLQTL KIIRN+IEHPDE K++RLRKANP  QR+
Sbjct: 492 VTVVCNRLQKAIEMLRSEVNATQAAIVLQTLFKIIRNLIEHPDEIKFRRLRKANPAFQRN 551

Query: 450 VANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCIAY 504
           +ANYKAAME+LFL+GFNEDVV  EIGK ETYLV+KRND  LLWL KSSLET +A+
Sbjct: 552 IANYKAAMEVLFLIGFNEDVVSSEIGKVETYLVMKRNDPGLLWLVKSSLETRMAH 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518252|ref|XP_004166156.1| PREDICTED: uncharacterized protein LOC101231982 [Cucumis sativus]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 293/543 (53%), Positives = 367/543 (67%), Gaps = 58/543 (10%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLAADPGI+AIMNKH WRVGIMTE+AP+GYVGV+PKC+LGFNKNHGEEISLRLRTDDL
Sbjct: 165 MHMLAADPGIVAIMNKHHWRVGIMTEMAPIGYVGVNPKCILGFNKNHGEEISLRLRTDDL 224

Query: 61  KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
           KGFRKYESIKKTLLHELAHM++SEHDANFY LDKQLN+EA ALDWT+S+GHTL+G+ ++ 
Sbjct: 225 KGFRKYESIKKTLLHELAHMIFSEHDANFYALDKQLNEEAAALDWTRSKGHTLTGMNYSQ 284

Query: 121 HHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEV------ 174
           +HE++  V D    SQKLGG++S QL +ARA+SVAAAY R+ N S  S GV +V      
Sbjct: 285 YHEEN-DVEDDFGVSQKLGGSMSHQLVNARAASVAAAYHRMTNNSDCSSGVPQVSAESNP 343

Query: 175 ---HE---EPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENK 228
              H+   EPDPDDS    L       S  +  L ++S +    KG             K
Sbjct: 344 NSSHQNKLEPDPDDSVYPKLEPDPDGSSNDQNMLGLDSNNSYNHKG-------------K 390

Query: 229 LEPDPDDSQDGEPLEPENYSDPEMVQ-----------QVSP------KKLAATNPYEEPD 271
           LEP PDDS   E LE E  S+P +++           +V P      + L AT  Y EPD
Sbjct: 391 LEPAPDDSIGSENLESE--SEPRIIKSLVVQTDLSSTEVHPVPATNSRLLEATKSYGEPD 448

Query: 272 PDDSETAWKSGVVVEPESLCSQLMEVDDTVQLRRTSAEPDPD------DSEAELKIKIVN 325
            DD  ++  S  V++ + L SQ M+  D    +R   EPDPD      ++ A  +    N
Sbjct: 449 LDDRGSSSNSK-VIDTDHL-SQGMQNLDCNIFQRMIVEPDPDALGEKLNTLASGRAIGHN 506

Query: 326 DTTEDQGHLYKAQRE-----PDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDD 380
           +T   +  L K Q          D +   E +Q EPDPD++LV   + S M +D+ DPDD
Sbjct: 507 ETDCLEAGLVKNQSHLSINCKKHDTIQGEEPMQIEPDPDESLVHQVDSSKMAVDQLDPDD 566

Query: 381 QELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLR 440
           QE++ IQD+V+VVC+RL++AI  L AEV P ES+ V+QTL KI++NVIEHPDE KY++LR
Sbjct: 567 QEIQRIQDSVSVVCNRLREAITKLLAEVKPSESSAVVQTLFKIVKNVIEHPDEMKYRKLR 626

Query: 441 KANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLET 500
           KANPIIQ++VANY+AA+EILFL+GF ED +LDEIGKAET+LVLKRND  LLWLAKS+LET
Sbjct: 627 KANPIIQKNVANYEAALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLET 686

Query: 501 CIA 503
           C A
Sbjct: 687 CNA 689

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450882|ref|XP_004143191.1| PREDICTED: uncharacterized protein LOC101220832 [Cucumis sativus]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 293/543 (53%), Positives = 367/543 (67%), Gaps = 58/543 (10%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLAADPGI+AIMNKH WRVGIMTE+AP+GYVGV+PKC+LGFNKNHGEEISLRLRTDDL
Sbjct: 165 MHMLAADPGIVAIMNKHHWRVGIMTEMAPIGYVGVNPKCILGFNKNHGEEISLRLRTDDL 224

Query: 61  KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
           KGFRKYESIKKTLLHELAHM++SEHDANFY LDKQLN+EA ALDWT+S+GHTL+G+ ++ 
Sbjct: 225 KGFRKYESIKKTLLHELAHMIFSEHDANFYALDKQLNEEAAALDWTRSKGHTLTGMNYSQ 284

Query: 121 HHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEV------ 174
           +HE++  V D    SQKLGG++S QL +ARA+SVAAAY R+ N S  S GV +V      
Sbjct: 285 YHEEN-DVEDDFGVSQKLGGSMSHQLVNARAASVAAAYHRMTNNSDCSSGVPQVSAESNP 343

Query: 175 ---HE---EPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENK 228
              H+   EPDPDDS    L       S  +  L ++S +    KG             K
Sbjct: 344 NSSHQNKLEPDPDDSVYPKLEPDPDGSSNDQNMLGLDSNNSYNHKG-------------K 390

Query: 229 LEPDPDDSQDGEPLEPENYSDPEMVQ-----------QVSP------KKLAATNPYEEPD 271
           LEP PDDS   E LE E  S+P +++           +V P      + L AT  Y EPD
Sbjct: 391 LEPAPDDSIGSENLESE--SEPRIIKSLVVQTDLSSTEVHPVPATNSRLLEATKSYGEPD 448

Query: 272 PDDSETAWKSGVVVEPESLCSQLMEVDDTVQLRRTSAEPDPD------DSEAELKIKIVN 325
            DD  ++  S  V++ + L SQ M+  D    +R   EPDPD      ++ A  +    N
Sbjct: 449 LDDRGSSSNSK-VIDTDHL-SQGMQNLDCNIFQRMIVEPDPDALGEKVNTLASGRAIGHN 506

Query: 326 DTTEDQGHLYKAQRE-----PDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDD 380
           +T   +  L K Q          D +   E +Q EPDPD++LV   + S M +D+ DPDD
Sbjct: 507 ETDCLEAGLVKNQSHLSINCKKHDTIQGEEPMQIEPDPDESLVHQVDSSKMAVDQLDPDD 566

Query: 381 QELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLR 440
           QE++ IQD+V+VVC+RL++AI  L AEV P ES+ V+QTL KI++NVIEHPDE KY++LR
Sbjct: 567 QEIQRIQDSVSVVCNRLREAITKLLAEVKPSESSAVVQTLFKIVKNVIEHPDEMKYRKLR 626

Query: 441 KANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLET 500
           KANPIIQ++VANY+AA+EILFL+GF ED +LDEIGKAET+LVLKRND  LLWLAKS+LET
Sbjct: 627 KANPIIQKNVANYEAALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLET 686

Query: 501 CIA 503
           C A
Sbjct: 687 CNA 689

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462523|ref|XP_003601543.1| Ubiquitin and WLM domain-containing protein [Medicago truncatula] gi|355490591|gb|AES71794.1| Ubiquitin and WLM domain-containing protein [Medicago truncatula]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 276/509 (54%), Positives = 341/509 (66%), Gaps = 55/509 (10%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLAADPGI+A+MNKHRWRVGIMTE+AP+GYVGVSPKC+LGFNKNHGEEISLRLRTDDL
Sbjct: 206 MHMLAADPGIVAVMNKHRWRVGIMTEMAPIGYVGVSPKCILGFNKNHGEEISLRLRTDDL 265

Query: 61  KGFRKYESIKKTLLHEL---AHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVR 117
           KGFRKYESIKKTLLHEL   AHM++SEHDANFY LDKQLNQEA +LDWT+S GHTLSG+R
Sbjct: 266 KGFRKYESIKKTLLHELVSYAHMIHSEHDANFYALDKQLNQEAASLDWTRSAGHTLSGMR 325

Query: 118 HTSHHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEVHEE 177
            +  +EDD F+ DS +  QKLGG+ SDQL +AR SSV AAY R+AN S ++ G SEV+EE
Sbjct: 326 SSEIYEDD-FIEDSSNIPQKLGGSRSDQLMNARESSVIAAYHRMANVSTSNSGESEVNEE 384

Query: 178 PDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENKLEPDPDDSQ 237
             PD           HT S+++ +   E+P       +EPDPDD      K EPDPDDS 
Sbjct: 385 LGPD-----------HTESSSEENKYTETPIIVDKGLNEPDPDDRIENGMKHEPDPDDSY 433

Query: 238 DGEPL---EPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVVVEPESLCSQL 294
            G+ +      N +D   V +  P     T      +P  S+T+                
Sbjct: 434 HGKAVLFTVCPNTTDSRTVFKQKPIDFGVT------EPSHSQTS---------------- 471

Query: 295 MEVDDTVQLRRTSAEPDPDDSEAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEVVQQ 354
                TV +  T    + +DSE  LK       T       K   EP  DE  A   + +
Sbjct: 472 -----TVNMDATYL--NANDSETSLK-----SITPAIAVFIK---EPAHDEFDAEMNMTE 516

Query: 355 EPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPLEST 414
           EPDPDD +V    +S+++  EPDPDDQEL+ I   +T VCSRLQKA+EML++EV+P++ T
Sbjct: 517 EPDPDDCMVPTPILSTLQTGEPDPDDQELQRINGAMTAVCSRLQKALEMLKSEVNPMQGT 576

Query: 415 TVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEI 474
           + LQTL KIIRN IEHP+  KYKRLRKANP+I+R++ N KAA+EIL +VGF EDV++D +
Sbjct: 577 STLQTLLKIIRNAIEHPEMEKYKRLRKANPVIERNILNNKAALEILSVVGFREDVIVDNL 636

Query: 475 GKAETYLVLKRNDLALLWLAKSSLETCIA 503
           GKA+ YLVLKRND  LLWLAKS+LE+  A
Sbjct: 637 GKADAYLVLKRNDPGLLWLAKSTLESSSA 665

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576119|ref|XP_002528954.1| conserved hypothetical protein [Ricinus communis] gi|223531600|gb|EEF33428.1| conserved hypothetical protein [Ricinus communis]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 281/512 (54%), Positives = 327/512 (63%), Gaps = 90/512 (17%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLAADPGI+AIMNKHRWRVGIMTE+APVGYVGVSPKC+LG NKNHGEEISLRLRTDDL
Sbjct: 163 MHMLAADPGIVAIMNKHRWRVGIMTEMAPVGYVGVSPKCILGLNKNHGEEISLRLRTDDL 222

Query: 61  KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
           KGFRKYESIKKTLLHELAHMVYSEHDANFY LDKQLNQEAV+ +WTKS GHTLSG+RH  
Sbjct: 223 KGFRKYESIKKTLLHELAHMVYSEHDANFYALDKQLNQEAVSFNWTKSGGHTLSGIRHLD 282

Query: 121 HHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEVHEEPDP 180
            +E+     D+RSFS KLGGN SDQLASARASSV AAY+RLA  +      S VH+E DP
Sbjct: 283 DYEES-NSSDNRSFSLKLGGNASDQLASARASSVTAAYQRLAYNN------SGVHDETDP 335

Query: 181 DDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDP-GYENKLEPDPDDSQDG 239
           DD    ++ E  +      G  +I          +EPDPD+       + EPDPDD  + 
Sbjct: 336 DD----LVAEQRNL-----GDGNIHKVY------NEPDPDESQVDIVVQAEPDPDDDLNS 380

Query: 240 EPLEPENYSDPEMV--------QQVSPKKLAATNPYEEPDPDDSETAWKSGVVVEPESLC 291
           + +     +D  M+        Q +S  ++     ++EPDPD+SE               
Sbjct: 381 QAVSGVR-TDQGMIIDESDLNSQSISGVRIDGGMIFDEPDPDESEA-------------- 425

Query: 292 SQLMEVDDTVQLRRTSAEPDPDDSEAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEV 351
                        + S+  D +  E            +DQ    KA REPDPDE   N +
Sbjct: 426 -------------KQSSSGDGNIHE------------QDQN---KAYREPDPDESQVNRL 457

Query: 352 VQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPL 411
           VQ+EPDP D LV  Q  SSM IDEPDPDDQEL+ IQD VTVV                  
Sbjct: 458 VQEEPDPVDALVSSQA-SSMAIDEPDPDDQELQRIQDPVTVVXXX--------------- 501

Query: 412 ESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVL 471
                 QTL KIIRNVIEHP+E K+KRLRKANPIIQ++VAN++AAMEIL + GF+EDVV 
Sbjct: 502 XXXXAFQTLFKIIRNVIEHPNEMKFKRLRKANPIIQKNVANHRAAMEILLVAGFSEDVVF 561

Query: 472 DEIGKAETYLVLKRNDLALLWLAKSSLETCIA 503
           D  GK ETYLVLKRND  LLWL KSSLET +A
Sbjct: 562 DATGKPETYLVLKRNDPGLLWLVKSSLETYVA 593

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469919|ref|XP_003605244.1| Ubiquitin and WLM domain-containing protein [Medicago truncatula] gi|355506299|gb|AES87441.1| Ubiquitin and WLM domain-containing protein [Medicago truncatula]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 272/512 (53%), Positives = 337/512 (65%), Gaps = 75/512 (14%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLAADPGI+A+MNKHRWRVGIMTE+AP+GYVGVSPKC+LGFNKNHGEEISLRLRTDDL
Sbjct: 206 MHMLAADPGIVAVMNKHRWRVGIMTEMAPIGYVGVSPKCILGFNKNHGEEISLRLRTDDL 265

Query: 61  KGFRKYESIKKTLLHEL---AHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVR 117
           KGFRKYESIKKTLLHEL   AHM++SEHDANFY LDKQLNQEA +LDWT+S GHTLSG+R
Sbjct: 266 KGFRKYESIKKTLLHELVSYAHMIHSEHDANFYALDKQLNQEAASLDWTRSAGHTLSGMR 325

Query: 118 HTSHHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASANSLGVSEVHEE 177
            +  +EDD F+ DS +  QKLGG+ SDQL +AR SSV AAY R+AN S ++ G SEV+EE
Sbjct: 326 SSEIYEDD-FIEDSSNIPQKLGGSRSDQLMNARESSVIAAYHRMANVSTSNSGESEVNEE 384

Query: 178 PDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENKLEPDPDDSQ 237
             PD           HT S+++ +   E+P       +EPDPDD      K EPDPDDS 
Sbjct: 385 LGPD-----------HTESSSEENKYTETPIIVDKGLNEPDPDDRIENGMKHEPDPDDSY 433

Query: 238 DGEPL---EPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVVVEPESLCSQL 294
            G+ +      N +D   V +  P     T      +P  S+T+                
Sbjct: 434 HGKAVLFTVCPNTTDSRTVFKQKPIDFGVT------EPSHSQTS---------------- 471

Query: 295 MEVDDTVQLRRTSAEPDPDDSEAELKI---KIVNDTTEDQGHLYKAQREPDPDELLANEV 351
                TV +  T    + +DSE  LK     I  + TE          EPDPD+ +    
Sbjct: 472 -----TVNMDATYL--NANDSETSLKSITPAIEMNMTE----------EPDPDDCMV--- 511

Query: 352 VQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPL 411
               P P         +S+++  EPDPDDQEL+ I   +T VCSRLQKA+EML++EV+P+
Sbjct: 512 ----PTPI--------LSTLQTGEPDPDDQELQRINGAMTAVCSRLQKALEMLKSEVNPM 559

Query: 412 ESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVL 471
           + T+ LQTL KIIRN IEHP+  KYKRLRKANP+I+R++ N KAA+EIL +VGF EDV++
Sbjct: 560 QGTSTLQTLLKIIRNAIEHPEMEKYKRLRKANPVIERNILNNKAALEILSVVGFREDVIV 619

Query: 472 DEIGKAETYLVLKRNDLALLWLAKSSLETCIA 503
           D +GKA+ YLVLKRND  LLWLAKS+LE+  A
Sbjct: 620 DNLGKADAYLVLKRNDPGLLWLAKSTLESSSA 651

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115477128|ref|NP_001062160.1| Os08g0500800 [Oryza sativa Japonica Group] gi|42407752|dbj|BAD08898.1| zinc metalloproteinase-like [Oryza sativa Japonica Group] gi|113624129|dbj|BAF24074.1| Os08g0500800 [Oryza sativa Japonica Group] gi|215715260|dbj|BAG95011.1| unnamed protein product [Oryza sativa Japonica Group] gi|218201399|gb|EEC83826.1| hypothetical protein OsI_29769 [Oryza sativa Indica Group]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/542 (50%), Positives = 327/542 (60%), Gaps = 74/542 (13%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLA DPGIIAIMNKHRWRVGIMTE+APVGYVGVSPKC+LGFNKN GEEISLRLRTDDL
Sbjct: 163 MHMLACDPGIIAIMNKHRWRVGIMTEMAPVGYVGVSPKCILGFNKNMGEEISLRLRTDDL 222

Query: 61  KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
           KGFRKYESIK+TLLHELAHMV+SEHDANF+ L+KQLN EA +LDWTKSRGH LSG +   
Sbjct: 223 KGFRKYESIKRTLLHELAHMVHSEHDANFFALNKQLNDEAASLDWTKSRGHVLSGRKIFD 282

Query: 121 HHEDDLFV-GDSRSFSQKLGGNISDQLASARASSVAAAYRRLANASA------------- 166
            +ED+  +  DS     KLGG  S  LASAR  S +AAY+R  NASA             
Sbjct: 283 SYEDEFVLEPDSVVVGHKLGGG-SSSLASARVLSGSAAYKRFLNASADLESSKDSVTIPG 341

Query: 167 NSLGVSEVHEEPDPDDSGLIMLGESHHT---------------VSAAKGSLDIESPSRDQ 211
           N + V     EPDPDD G     ++                    A+  S+      +D 
Sbjct: 342 NEILVPNTKFEPDPDDVGQDFSQDNTKVEPDPDDNDDMNVDVGTGASWSSVSRSFTEQDT 401

Query: 212 WKGHEPDPDD--DPGYENKLEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEE 269
               EPDPDD         LEPDPDDS + + L  E   D +                 E
Sbjct: 402 ISHSEPDPDDIHQQSTAGCLEPDPDDSSNVDILSQELTIDGKQ--------------NGE 447

Query: 270 PDPDDSETAWKSGVVVEPESLCSQLMEVDDTVQLRRTSAEPDPDD-SEAELKIKIVNDTT 328
           PDPDD+ T+        PE +    +E +        ++EPDPDD S A L  K+  D +
Sbjct: 448 PDPDDNGTS-----KFIPEPVNKMEVETELGSNFAVQNSEPDPDDSSNAILNKKLGTDRS 502

Query: 329 EDQGHLYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQ------- 381
                          DE     VV++  +  +   +    S+M   EPDPDD        
Sbjct: 503 ---------------DETTCEAVVEECVNKMEVETEQSRNSTMSKSEPDPDDHAANSNIS 547

Query: 382 ELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRK 441
           EL+ I++ V  +C+RLQKAIEMLR++ +P E+T+ LQTL KII+NVIEHP + KY+RLRK
Sbjct: 548 ELQRIEEPVAALCARLQKAIEMLRSQATPTEATSALQTLFKIIKNVIEHPHDIKYRRLRK 607

Query: 442 ANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETC 501
           +NP  QRSVANYKAAME+L L+GF EDVV DEIG+AETYLVLKRND  LLWLAK+SLE  
Sbjct: 608 SNPQFQRSVANYKAAMEVLELIGFCEDVVSDEIGRAETYLVLKRNDPGLLWLAKASLEVS 667

Query: 502 IA 503
           +A
Sbjct: 668 MA 669

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242082325|ref|XP_002445931.1| hypothetical protein SORBIDRAFT_07g028250 [Sorghum bicolor] gi|241942281|gb|EES15426.1| hypothetical protein SORBIDRAFT_07g028250 [Sorghum bicolor]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/538 (50%), Positives = 331/538 (61%), Gaps = 79/538 (14%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
           MHMLA DPGIIAIM KH+WRVGIMTE+APVGYVGVSPKC+LGFNKN GEEISLRLRTDDL
Sbjct: 163 MHMLACDPGIIAIMKKHKWRVGIMTEMAPVGYVGVSPKCILGFNKNMGEEISLRLRTDDL 222

Query: 61  KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
           KGFRKYESIKKTLLHELAHMV+SEHDANF+ L+KQLN+EA ++DWTKS GH LSG +   
Sbjct: 223 KGFRKYESIKKTLLHELAHMVHSEHDANFFALNKQLNEEAASMDWTKSTGHMLSGRKIFD 282

Query: 121 HHEDDLFVGDSRSFS-QKLGGNISDQLASARASSVAAAYRRLANASANS----------- 168
            +E++  +    + +  +LGG  S  LASARA S AAAY+R  +ASA +           
Sbjct: 283 SYEEEFVLEPEITVAGHRLGGE-SSSLASARALSGAAAYQRFLDASAKADHDASGTKIEY 341

Query: 169 ----LGVSEVHE----EPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPD 220
               +    VHE    +PDPDD        + H  SAA  SL      +      EPDPD
Sbjct: 342 NPDDVPQDFVHETLKVQPDPDD--------AMHVDSAAGISL----AGQPTISYSEPDPD 389

Query: 221 DDPGYENK-----LEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDS 275
           D   +E +     L+PDPD   +   L  E   D                P+ +PDPDDS
Sbjct: 390 DVEKHEKQSSDRCLQPDPDVPSNANNLNQELRFD--------------GRPHSKPDPDDS 435

Query: 276 ETAWKSGVVVEPESLCSQLMEVDD--TVQLRRTSAEPDP-DDSEAELKIKIVNDTTEDQG 332
                    V PES     MEVD   T  +     EPDP D S A +K  +V D      
Sbjct: 436 TNE------VVPES--GNKMEVDSELTNSVTVLKYEPDPADSSNAIVKQDLVIDG----- 482

Query: 333 HLYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQ-------ELRS 385
              K   EPDPD+    +V++   +  + + +    S++   EPDPDD        EL+ 
Sbjct: 483 ---KHGEEPDPDDTACQDVLKSG-NLTERITEQSRNSTVLKSEPDPDDHVVDSNSNELQR 538

Query: 386 IQDTVTVVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPI 445
           I++ V  +CSRLQK+IE LR + +P E+ + + TL KII+NVIEHP++ KYKRLRK+NP 
Sbjct: 539 IEEPVAALCSRLQKSIETLRLQATPAEAESAIHTLFKIIKNVIEHPNDIKYKRLRKSNPH 598

Query: 446 IQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLETCIA 503
            QRSVANYKAAME+L L+GF EDV+ DEIG+AETYLVLKRND  LLWLAKSSLE  +A
Sbjct: 599 FQRSVANYKAAMEVLELIGFCEDVISDEIGRAETYLVLKRNDPGLLWLAKSSLEVSLA 656

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
TAIR|locus:2177286	603	AT5G35690 [Arabidopsis thalian	0.607	0.507	0.468	5.2e-65
POMBASE|SPCC1442.07c	282	SPCC1442.07c "ubiquitin/metall	0.246	0.439	0.412	6e-20
ASPGD|ASPL0000062153	341	AN1049 [Emericella nidulans (t	0.218	0.322	0.455	1.9e-18
TAIR|locus:505006190	404	AT1G55915 [Arabidopsis thalian	0.184	0.230	0.380	5.6e-08
ASPGD|ASPL0000062736	336	AN0304 [Emericella nidulans (t	0.186	0.279	0.365	1.7e-07
UNIPROTKB|G4MYN3	483	MGG_01341 "Uncharacterized pro	0.196	0.204	0.371	1.3e-06
TAIR|locus:2156489	323	AT5G48690 "AT5G48690" [Arabido	0.422	0.659	0.256	1.6e-06
UNIPROTKB|E9PSQ4	989	Gabre "Gamma-aminobutyric acid	0.521	0.265	0.237	2.8e-06
UNIPROTKB|F1LP68	914	Gabre "Gamma-aminobutyric acid	0.531	0.293	0.228	5.3e-06
TAIR|locus:2141563	668	AT4G09160 "AT4G09160" [Arabido	0.563	0.425	0.224	9.6e-06

TAIR|locus:2177286 AT5G35690 [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 169/361 (46%), Positives = 208/361 (57%)

Query:     1 MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
             MHMLAADPGIIA+MNKHRWRVGIMTELAPVGYVGVSP+C+LGFNKN GEEISLRLRTDDL
Sbjct:   168 MHMLAADPGIIAVMNKHRWRVGIMTELAPVGYVGVSPRCLLGFNKNQGEEISLRLRTDDL 227

Query:    61 KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
             KGFRKY+SIKKTLLHELAHMVY+EHD  FY LD QLN+EA +LDWTKSRGHTL+G +  +
Sbjct:   228 KGFRKYQSIKKTLLHELAHMVYTEHDEKFYALDSQLNKEAESLDWTKSRGHTLNGTKFIN 287

Query:   121 HH-EDDLFVGDSRSFSQKLGGNISDQLXXXXXXXXXXXXXXXXXXXXXXLGVSEVHEEPD 179
                E+D F  ++ + SQ+LGGN SD L                        VS++ EEPD
Sbjct:   288 DDDEEDYFFDENETVSQRLGGNQSDNLGNARESSVAAAYRRLSHTS-----VSKLSEEPD 342

Query:   180 PDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPG-----------YE-- 226
             PDD  L+ + + +  +   K     +S S  ++   EPDPDD              YE  
Sbjct:   343 PDD--LVDVRDENKQLVLPKA----QSDSMTKF---EPDPDDTTADDATKTESCHSYEMA 393

Query:   227 NKL--------EPDPDDSQDGEPL-EPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSET 277
             + L        EPDPDDS+    + E EN         +     A       P+P+++E 
Sbjct:   394 SDLAHPTKDDDEPDPDDSETHTSIGEVENMKIVNDTVMLCGNLNADEATQATPEPNNAEP 453

Query:   278 AWKSGVVV-EPESLCSQLMEVDDTVQLRRTSAEPDPDDSEAELKIKIVNDTTEDQGHLYK 336
                  +VV E E++    MEVD          EPDPDD E +   +I +  T     L K
Sbjct:   454 YPDYNLVVTERETI----MEVD----------EPDPDDQEIQ---RIQDSVTIISNRLKK 496

Query:   337 A 337
             A
Sbjct:   497 A 497

GO:0005634 "nucleus" evidence=ISM

POMBASE|SPCC1442.07c SPCC1442.07c "ubiquitin/metalloprotease fusion protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 243 (90.6 bits), Expect = 6.0e-20, P = 6.0e-20
 Identities = 52/126 (41%), Positives = 73/126 (57%)

Query:     1 MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
             +  L  D GI  IM+ HRW V +++E+ P  +     K  LG N N G  I LRLRTD  
Sbjct:   129 LERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSK-TLGLNHNQGAHIELRLRTDRY 187

Query:    61 KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSG-VRHT 119
              GFR Y+++K TL+HEL H V+ EHD++F+ L +QL +EA A D     G  +S    +T
Sbjct:   188 DGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYVSDRASYT 247

Query:   120 SHHEDD 125
                ++D
Sbjct:   248 PQQDND 253

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0008237 "metallopeptidase activity" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISM

GO:0016925 "protein sumoylation" evidence=ISS

ASPGD|ASPL0000062153 AN1049 [Emericella nidulans (taxid:162425)]

 Score = 240 (89.5 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 51/112 (45%), Positives = 69/112 (61%)

Query:     4 LAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGF 63
             L  DPGI + M KHR+ V ++TE+ P  +   S    LG N+N GE I LRLRTD   G+
Sbjct:   164 LRDDPGIRSAMAKHRFSVPLLTEMDPAEHT-TSESRTLGLNRNKGEVIELRLRTDAYDGY 222

Query:    64 RKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSG 115
             R Y +I++TL HELAH V+S+HD +F+ L KQ+  E    D+ +S G    G
Sbjct:   223 RDYRTIRRTLCHELAHCVFSDHDRDFWDLTKQIEGEVERGDY-RSGGRMAGG 273

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:505006190 AT1G55915 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 40/105 (38%), Positives = 58/105 (55%)

Query:    13 IMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLR--TDDLKGFRKYESIK 70
             IM + +WRV +++E  P      +P+ +LG N N G ++ LRLR    DL  F  Y  I 
Sbjct:    41 IMTRRKWRVKLLSEFCPT-----NPR-LLGVNVNRGVQVKLRLRRVNHDLD-FLSYHEIL 93

Query:    71 KTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSG 115
              T+LHEL H  +  H+A+FY L  +L +E   L    S+G T +G
Sbjct:    94 DTMLHELCHNAHGPHNASFYKLWDELRKECEEL---MSKGITGTG 135

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000062736 AN0304 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 38/104 (36%), Positives = 52/104 (50%)

Query:    13 IMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLR-TDDLKGFRKYESIKK 71
             IM +  WRVG + E  P        + +LG N N GE+I LRLR   D   F   + +  
Sbjct:    37 IMRRRSWRVGTLCEFFP------QQRNLLGLNVNGGEKICLRLRHAGDQSQFLPLDQVVD 90

Query:    72 TLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSG 115
             T+LHEL H+V+  H+  F+ L  QL  E   L     +G+T  G
Sbjct:    91 TMLHELCHIVHGPHNQQFHALWNQLRDEHTELTM---KGYTGEG 131

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010225 "response to UV-C" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0010224 "response to UV-B" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB|G4MYN3 MGG_01341 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 42/113 (37%), Positives = 54/113 (47%)

Query:    13 IMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLR-TDDLKGFRKYESIKK 71
             IM    WRV  + E  P        + +LG N N   +I +RLR   D+  F  +E +  
Sbjct:    37 IMRARGWRVRQLAEFYP------DQQNLLGLNVNRTHKILVRLRYPGDVNQFLPFEEVTD 90

Query:    72 TLLHELAHMVYSEHDANFYGLDKQLNQEAVAL-------DWTKSRGHTLSGVR 117
             TLLHELAH+V+  HD+ F+ L  QL  E   L       D   S GH L G R
Sbjct:    91 TLLHELAHIVHGPHDSKFHALWDQLRDEHEGLLRSGYTGDGFLSVGHKLGGRR 143

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2156489 AT5G48690 "AT5G48690" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 59/230 (25%), Positives = 94/230 (40%)

Query:   249 DPEMVQQVSPKKLAATN-PYEEPDPDDSETAWKSGVVVEPESLCSQLMEVDDTVQLRRTS 307
             D E   Q     L   N   E P+P D           E      +L E  +T + R   
Sbjct:    51 DHENESQFENMPLVEFNIEIESPNPSDDTAETSHARAKELSEQARKLREEQETKRERERE 110

Query:   308 AEPDPDDSEAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEVVQQEPDPDD-----NL 362
              E      E  ++ K + +  E + ++   + E D +E  A E +  + + D       L
Sbjct:   111 KERIRAGKEL-METKRIAEENERKRNIALRKAEKD-EEKKAREKIMLKVNADKLERKRRL 168

Query:   363 VQLQEISSMKIDEP-DPDDQELRSIQDTVTVVCSRLQKAIEMLRA------EVSPLESTT 415
                 E  S     P  P D + R +  + +VV S+ ++  E LR+      +  P  +  
Sbjct:   169 GLPTETESASTSNPVSPLDPK-RIVMSSPSVV-SKAEEMRECLRSLRRNHKDEDPRITRR 226

Query:   416 VLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGF 465
             V +TL  I+RNV + PDE +Y+R+R  N +    V  YK  +E + L GF
Sbjct:   227 VFETLLTIVRNVAKKPDEERYRRIRLKNRLFHERVGRYKEGIEFMELCGF 276

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E9PSQ4 Gabre "Gamma-aminobutyric acid receptor subunit epsilon" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 67/282 (23%), Positives = 125/282 (44%)

Query:   216 EPDPDDDPGYENKLEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDS 275
             EP P+ +P  E + EP P+   + EP EPE   +PE   Q  P+      P  +PDP+  
Sbjct:   370 EPQPEPEPEPEPQPEPQPEPEPEPEP-EPEPEPEPEPEPQPEPQPEPEPQPEPQPDPEPQ 428

Query:   276 -ETAWKSGVVVEPESLCSQLMEVDDTVQLRRTSAEPDPD-DSEAELKIKIVNDTTEDQGH 333
              E   + G   EPE       E +   Q      EP+ + D E E + + + +   +   
Sbjct:   429 PEPGPEPGPEPEPEPQLEPQPEPEPEPQ-----PEPESELDLEPEPEPQPLPEPQPEPEP 483

Query:   334 LYKAQREPDPDELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVV 393
               + + EP+P+     E  + EP+P+       E+      EP P  ++L + +  +T  
Sbjct:   484 EPEPEPEPEPEPEPEPEP-EPEPEPEPEPEPELELEPQSQLEPQPSGKKLPARETELTAD 542

Query:   394 CSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKR-LRKANPIIQRSVAN 452
              +  +   ++ RA  S + +T +     K+  ++ E P     K  +    PI   S+ +
Sbjct:   543 HTTERPRGKLTRA--SQILNTILSNYDHKLRPSIGEKPTVVTVKVFVNSLGPI---SILD 597

Query:   453 YKAAMEILFL-VGFNEDVVLDEIGKAETYLVLKRNDLALLWL 493
              + +++I+F    ++E +  ++    ET L+L  N ++ LW+
Sbjct:   598 MEYSIDIIFYQTWYDERLRYNDT--FET-LILHGNVVSQLWI 636

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1LP68 Gabre "Gamma-aminobutyric acid receptor subunit epsilon" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 65/284 (22%), Positives = 125/284 (44%)

Query:   216 EPDPDDDPGYENKLEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDS 275
             EP+P+ +P  E + EP+P+     EP EPE   +PE   +  P+      P  EP+P+  
Sbjct:   288 EPEPEPEPEPEPEPEPEPEPEPQPEP-EPEPEPEPEPEPEPEPEPEPQPEPQPEPEPEP- 345

Query:   276 ETAWKSGVVVEPESLCSQLMEVDDTVQLRRTSAEPDPD-DSEAELKIKIVNDTTEDQGHL 334
             E   +     EPE       E +   +      EP P+ +SE +L+ +       +    
Sbjct:   346 EPQPEPQPEPEPEPEPEPEPEPEPEPEPPEPEPEPQPEPESELDLEPEPEPQPLPEPQPE 405

Query:   335 YKAQREPDPD---ELLANEVVQQEPDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVT 391
              + + EP+P+   E       + EP+P+       E+      EP P  ++L + +  +T
Sbjct:   406 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPELELEPQSQLEPQPSGKKLPARETELT 465

Query:   392 VVCSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKR-LRKANPIIQRSV 450
                +  +   ++ RA  S + +T +     K+  ++ E P     K  +    PI   S+
Sbjct:   466 ADHTTERPRGKLTRA--SQILNTILSNYDHKLRPSIGEKPTVVTVKVFVNSLGPI---SI 520

Query:   451 ANYKAAMEILFL-VGFNEDVVLDEIGKAETYLVLKRNDLALLWL 493
              + + +++I+F    ++E +  ++    ET L+L  N ++ LW+
Sbjct:   521 LDMEYSIDIIFYQTWYDERLRYNDT--FET-LILHGNVVSQLWI 561

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

TAIR|locus:2141563 AT4G09160 "AT4G09160" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 69/308 (22%), Positives = 132/308 (42%)

Query:   188 LGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENKLEPDPDDSQDGEPLEPENY 247
             L ES+HT       +  E+ + +    +    D +  +E  + P+ + ++    LE  N+
Sbjct:    53 LEESNHTAEVVSEKVTPETMTLESEGLNHAAEDSEQTHE--VTPETETAK----LEVLNH 106

Query:   248 S--DPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVVVEPESLCSQLME--VDDTVQL 303
             +  D E   +V+P+K    + +     +DSE   +  V  E E++ S+++    +D+ Q 
Sbjct:   107 TAEDSEQTHEVTPEKETVKSEFLNHVAEDSEQTHE--VTPETETVKSEVLNHAAEDSEQP 164

Query:   304 RRTSAEPDPDDSEAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEVVQQ--------E 355
             R  +  P+ + SEA+  + +V   TE+  H  +   E +P + L  E  ++        E
Sbjct:   165 RGVTPTPETETSEADTSL-LVTSETEEPNHAAEDYSETEPSQKLMLEQRRKYMEVEDWTE 223

Query:   356 PDPDDNLVQLQEISSMKIDEPDPDDQELRSIQDTVTVVCSRLQKAIEMLRAEVSPLESTT 415
             P+  D  V     S  +  +P+P          T TV    L + +    AEV   +   
Sbjct:   224 PELPDEAVLEAAASVPEPKQPEPQTPPPPPSTTTSTVASRSLAEMMNREEAEVEEKQKIQ 283

Query:   416 VLQTL--CKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAM-EILFLVGFNEDVVLD 472
             + ++L   K   N I    ET+   L++   ++Q S  + K ++  +  L     DVVL 
Sbjct:   284 IPRSLGSFKEETNKISDLSETELNALQELRHLLQVSQDSSKTSIWGVPLLKDDRTDVVLL 343

Query:   473 EIGKAETY 480
             +  +A  +
Sbjct:   344 KFLRARDF 351

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	504
pfam08325	183	pfam08325, WLM, WLM domain	1e-52
cd10463	96	cd10463, PUB_WLM, PNGase/UBA or UBX (PUB) domain o	5e-38
cd09212	96	cd09212, PUB, PNGase/UBA or UBX (PUB) domain of p9	7e-21
pfam09409	85	pfam09409, PUB, PUB domain	7e-18
cd10461	107	cd10461, PUB_UBA_plant, PNGase/UBA or UBX (PUB) do	2e-13
cd10460	102	cd10460, PUB_UBXD1, PNGase/UBA or UBX (PUB) domain	8e-13
cd10462	100	cd10462, PUB_UBA, PNGase/UBA or UBX (PUB) domain o	9e-09
smart00580	57	smart00580, PUG, domain in protein kinases, N-glyc	2e-07
cd10459	93	cd10459, PUB_PNGase, PNGase/UBA or UBX (PUB) domai	5e-05
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.004

>gnl|CDD|219796 pfam08325, WLM, WLM domain

 Score =  175 bits (447), Expect = 1e-52
 Identities = 69/170 (40%), Positives = 86/170 (50%), Gaps = 16/170 (9%)

Query: 1   MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTD-D 59
           +  LA D  +  IM +HRWRVG++TE  P          +LG N N GE I LRLRT  D
Sbjct: 22  LKRLADD--VRPIMKEHRWRVGLLTEFYPRNAR------LLGLNVNKGEVIELRLRTPSD 73

Query: 60  LKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWT-----KSRGHTLS 114
             GF  +ESI  TLLHELAH V+  HD  FY L  +L +E   LD        S G  L 
Sbjct: 74  DGGFLPFESIMGTLLHELAHNVHGPHDRKFYALLDELRKEVEELDARGYDGFLSSGRRLG 133

Query: 115 G-VRHTSHHEDDLFVGDSRSFSQKLGGN-ISDQLASARASSVAAAYRRLA 162
           G   + S    +L         ++LGG+ +S    SAR  + AAA RRL 
Sbjct: 134 GRGSYNSAEGRELGGNGLSGGGERLGGDSLSRSGESARELAAAAAERRLE 183

This is a predicted metallopeptidase domain called WLM (Wss1p-like metalloproteases). These are linked to the Ub-system by virtue of fusions with the UB-binding PUG (PUB), Ub-like, and Little Finger domains. More specifically, genetic evidence implicates the WLM family in de-SUMOylation. Length = 183

>gnl|CDD|198421 cd10463, PUB_WLM, PNGase/UBA or UBX (PUB) domain of the Wss1p-like metalloprotease (WLM) family

 Score =  134 bits (338), Expect = 5e-38
 Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 5/101 (4%)

Query: 400 AIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEI 459
           A+  LR+ VSP E+ + LQTL KI+ N IEHP+E K++RLRK+NP  QR VA +  A+E+
Sbjct: 1   ALAALRSAVSPAEAVSALQTLFKILGNAIEHPNEDKFRRLRKSNPAFQRRVARFPGAVEL 60

Query: 460 LFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLET 500
           L   GF E+ V       +TYL+L RND  LLWLAKSS+E 
Sbjct: 61  LLAAGFAEEGV----SGPDTYLLL-RNDPGLLWLAKSSVEE 96

The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. WLM domains are found mostly in plant proteins, belonging to the Zincin-like superfamily of Zn-dependent peptidases that are linked to the ubiquitin signaling pathway through its fusion with the ubiquitin-binding PUB, ubiquitin-like, and Little Finger domains. More specifically, genetic evidence implicates the WLM family in de-SUMOylation. Length = 96

>gnl|CDD|198416 cd09212, PUB, PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins

 Score = 86.7 bits (215), Expect = 7e-21
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 401 IEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEIL 460
           ++ LR+          L+TL KI+ N++ +P E KY+R+R +N   Q  V      +E+L
Sbjct: 1   LDALRSNNDLEAFKEALKTLLKILDNILSNPTEEKYRRIRLSNKAFQEKVLPVPGGLELL 60

Query: 461 FLVGFNEDVVLDEIGKAETYLVLK-RNDLALLWLAKSSLE 499
             +GF E+         E++LVL    D+ LL  AK++LE
Sbjct: 61  LALGFVEETESG-----ESFLVLPDDADVDLLKDAKAALE 95

The PUB domain is found in p97 adaptor proteins such as PNGase, UBXD1 (UBX domain-containing protein 1), and RNF31 (RING finger protein 31). It functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The p97, a type II AAA+ ATPase, is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The PUB domain in UBX-domain protein 1 (UBXD1), which is widely expressed in higher eukaryotes (except for fungi) and which is involved in substrate recruitment to p97, interacts strongly with the C-terminus of p97. Peptide:N-glycanase (PNGase), a deglycosylating enzyme that functions in proteasome-dependent degradation of misfolded glycoproteins which are translocated from the endoplasmic reticulum (ER) to the cytosol during ERAD, associates with the ubiquitin-proteasome system proteins mediated by the N-terminal PUB domain. PNGase is present in all eukaryotic organisms; however, the yeast PNGase ortholog does not contain the PUB domain. The RNF31 protein, also known as HOIP or Zibra, contains an N-terminal PUB domain similar to those in PNGase and UBXD1, suggesting its association with p97. Length = 96

>gnl|CDD|220225 pfam09409, PUB, PUB domain

 Score = 78.1 bits (193), Expect = 7e-18
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 412 ESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVL 471
           +    L+ L KI++N++ +P+E KY+R+R +N   +  + + + A+E+L L+GF E    
Sbjct: 5   KLKEALELLLKILKNILSNPNEEKYRRIRLSNKTFKEKILSVEGALELLELIGFVE---- 60

Query: 472 DEIGKAETYLVL-KRNDLALLWLAKSSL 498
                 E +LVL  R DL LL  A   L
Sbjct: 61  ---VTGEEFLVLPDRADLELLARALEYL 85

The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain. This domain is also found on other proteins linked to the ubiquitin-proteasome system. Length = 85

>gnl|CDD|198419 cd10461, PUB_UBA_plant, PNGase/UBA or UBX (PUB) domain of plant Ubiquitin-associated (UBA) domain containing proteins

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 414 TTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDE 473
            T  QTL   + NV ++PDE K++R+R  N   Q  V   +  +E L L GF  D   + 
Sbjct: 16  KTAFQTLLTYLGNVAKNPDEEKFRRIRLTNAAFQERVGALRGGIEFLELCGFERDEGDE- 74

Query: 474 IGKAETYLVLKRN--DLALLWLAKSSLETCIA 503
                  LVL R+  D+ALL  A + L + I 
Sbjct: 75  ------ALVLPRDKVDMALLNTAGAELNSAIN 100

The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The UBA domain, along with UBL (ubiquitin-like) domain, has been implicated in proteasomal degradation by associating with substrates destined for degradation as well as with subunits of the proteasome, thus regulating protein turnover. This family contains only plant UBA domain-containing proteins. Length = 107

>gnl|CDD|198418 cd10460, PUB_UBXD1, PNGase/UBA or UBX (PUB) domain of UBXD1

 Score = 64.2 bits (157), Expect = 8e-13
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 419 TLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAE 478
           TLCK + N+I+HPDE KY+++R +N + Q  V   + A+E L   GF E   L E    E
Sbjct: 20  TLCKYLENIIDHPDEEKYRKIRLSNKVFQEKVLPVEGALEFLEAAGFEE-KTLPEQEDEE 78

Query: 479 TYLVLKR-NDLALLWLAKSSLETC 501
            +LVL    D+  L LAK  L++ 
Sbjct: 79  DFLVLSEECDIDSLELAKDLLQSL 102

This PUB domain is found in p97 adaptor protein UBXD1 (UBX domain-containing protein 1, also called UBXD6). It functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The PUB domain in UBX-domain protein 1 (UBXD1), which is widely expressed in higher eukaryotes, except for fungi, and which is involved in substrate recruitment to p97, interacts strongly with the C-terminus of p97. UBXD1 also interacts with HRD1 and HERP, both components of the ERAD pathway, via p97. It is possibly involved in aggresome formation; aggresomes are perinuclear compartments that contain misfolded proteins colocalized with centrosome markers. Length = 102

>gnl|CDD|198420 cd10462, PUB_UBA, PNGase/UBA or UBX (PUB) domain of Ubiquitin-associated (UBA) domain containing proteins

 Score = 52.5 bits (126), Expect = 9e-09
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 394 CSRLQKAI-EMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVAN 452
           C+ L+K   +  +  +  +     L+T      N  +HP E KYK++RK N      V  
Sbjct: 1   CNNLKKEYKDTDKQGL--MTCLNTLRTYIS---NAHDHPLEEKYKKIRKENKAFVSKVLI 55

Query: 453 YKAAMEILFLVGFNED 468
           ++ A+EIL   GF + 
Sbjct: 56  FEGAIEILLACGFEDT 71

The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The UBA domain, along with UBL (ubiquitin-like) domain, has been implicated in proteasomal degradation by associating with substrates destined for degradation as well as with subunits of the proteasome, thus regulating protein turnover. Length = 100

>gnl|CDD|197798 smart00580, PUG, domain in protein kinases, N-glycanases and other nuclear proteins

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 416 VLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIG 475
            ++ L + +RN++ HP E       K NP I+  +       E+ F VGF   +++ E+ 
Sbjct: 1   SVRDLLRALRNILHHPREE------KGNPAIKERLGPVPGGFELYFTVGF-PRLLISEV- 52

Query: 476 KAETYLVLK 484
               Y + K
Sbjct: 53  ----YTLPK 57

Length = 57

>gnl|CDD|198417 cd10459, PUB_PNGase, PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase)

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 12/76 (15%)

Query: 411 LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVV 470
           LE++  L T      N++ +P++ KY+ +R  NP+    +   + A+E LF +GF ED  
Sbjct: 13  LEASEALLTYAN---NILRNPNDPKYRSIRLDNPVFSTKLLPARGAIECLFEMGFVED-- 67

Query: 471 LDEIGKAETYLVLKRN 486
                  E  L L RN
Sbjct: 68  -------EDRLFLPRN 76

This PUB (PNGase/UBA or UBX) domain is found in the p97 adaptor protein PNGase (Peptide:N-glycanase). The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. Peptide:N-glycanase (PNGase), a deglycosylating enzyme that functions in proteasome-dependent degradation of misfolded glycoproteins which are translocated from the endoplasmic reticulum (ER) to the cytosol during ERAD, associates with the ubiquitin-proteasome system proteins mediated by the N-terminal PUB domain. PNGase is present in all eukaryotic organisms; however, the yeast PNGase ortholog does not contain the PUB domain. The mammalian PNGase binds a considerable number of proteins via its PUB domain; these include ERAD E3 enzyme, the autocrine motility factor receptor (AMFR or gp78), SAKS and Derlin-1. Length = 93

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 37.6 bits (86), Expect = 0.004
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 170 GVSEVHEEPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENKL 229
           GV       +P D G+   G+         G+ D      D     EP+ +++P  E + 
Sbjct: 21  GVGFAAAADEPADKGITKGGKGKGEKGTKVGADDTNGTDPDD----EPEEEEEPEPEEEG 76

Query: 230 EPDPDDSQDGEP-LEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKS 281
           E +P+  ++GE   EPE   + E   +  P+      P  EP+P+      KS
Sbjct: 77  EEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEPGAATLKS 129

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	504
PF08325	186	WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1	100.0
KOG4842	278	consensus Protein involved in sister chromatid sep	99.87
PF09409	87	PUB: PUB domain; InterPro: IPR018997 The PUB (also	99.77
KOG4842	278	consensus Protein involved in sister chromatid sep	99.73
smart00580	58	PUG domain in protein kinases, N-glycanases and ot	98.97
PF01863	205	DUF45: Protein of unknown function DUF45; InterPro	98.51
COG1451	223	Predicted metal-dependent hydrolase [General funct	97.94
smart00731	146	SprT SprT homologues. Predicted to have roles in t	96.8
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	95.6
KOG2699	407	consensus Predicted ubiquitin regulatory protein [	94.77
PRK04351	149	hypothetical protein; Provisional	91.95
PRK04860	160	hypothetical protein; Provisional	90.36
KOG2699	407	consensus Predicted ubiquitin regulatory protein [	87.34
COG3091	156	SprT Zn-dependent metalloprotease, SprT family [Ge	85.53
KOG3854	505	consensus SPRT-like metalloprotease [Function unkn	80.74

>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase

Probab=100.00  E-value=5e-44  Score=339.95  Aligned_cols=155  Identities=43%  Similarity=0.590  Sum_probs=133.7

Q ss_pred             cccccCcc-hhhHhhhcCeeeceecccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHHhhh
Q 010667            2 HMLAADPG-IIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHM   80 (504)
Q Consensus         2 ~~L~~~a~-i~pIM~~~~w~V~~L~Ef~P~~~~~~s~~~lLGlN~N~G~~I~LRLR~~d~~~Flp~~~V~~tlLHELaH~   80 (504)
                      ++|.++|. |.|||++|+|+|++|+||+|++      ..+||+|+|+|++|+||||+++.++|+||++|+.|||||||||
T Consensus        20 ~lL~rlA~~v~pIM~~~~~~V~~L~E~~P~~------~~llG~N~N~G~~I~lrLR~~~~~~fl~~~~i~~t~lHELaH~   93 (186)
T PF08325_consen   20 ELLERLAADVKPIMRKHGWRVGSLEEFYPNG------ERLLGLNVNKGEKICLRLRTPDDGGFLPYETILGTMLHELAHN   93 (186)
T ss_pred             HHHHHHHHHHHHHHHHcCcccCeeeccCCCC------CCCcceecCCCcEEEEEeCCCCCCCEeeHHHHHHHHHHHHHhc
Confidence            57888874 5599999999999999999996      4599999999999999999965599999999999999999999


Q ss_pred             hcCccchhHHHHHHHHHHHHHHhccc------cCCCeeecCCCCCCcccccccccCCCCCCccccCCCC-----CCCccH
Q 010667           81 VYSEHDANFYGLDKQLNQEAVALDWT------KSRGHTLSGVRHTSHHEDDLFVGDSRSFSQKLGGNIS-----DQLASA  149 (504)
Q Consensus        81 vhg~Hd~~F~~L~~~L~~E~~~l~~~------~s~G~~LgG~~~~~~~~~~~~~~~~~~~g~rLGG~~~-----~~~~s~  149 (504)
                      +|++||.+||++|++|..||++|+|+      ++.|++|||.........+.......++|++|||++.     .++.++
T Consensus        94 ~~~~H~~~F~~l~~~l~~e~~~l~~~G~~~gf~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~LgG~s~~~~~~~~~~~~  173 (186)
T PF08325_consen   94 VHGPHDDKFWKLLDELRKECEELDAKGYTEGFWSSGRRLGGSSGQPSEERELRGNGLSGGGQRLGGGSSSRPRKAQPKSP  173 (186)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccCCCCcccchhhhhhccccCCCCeeCCCCCCCCCCcCCCcCH
Confidence            99999999999999999999999996      7999999987654321111223334668999999975     467899


Q ss_pred             HHHHHHHHHHHHh
Q 010667          150 RASSVAAAYRRLA  162 (504)
Q Consensus       150 Re~aa~AAerR~~  162 (504)
                      |+++|+||+||++
T Consensus       174 Re~~a~AAerR~~  186 (186)
T PF08325_consen  174 REAAAAAAERRLR  186 (186)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999999975

Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.

>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=4.7e-23  Score=202.95  Aligned_cols=143  Identities=43%  Similarity=0.522  Sum_probs=130.0

Q ss_pred             CcccccCcchhhHhhhcCeeeceecccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHHhhh
Q 010667            1 MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHM   80 (504)
Q Consensus         1 ~~~L~~~a~i~pIM~~~~w~V~~L~Ef~P~~~~~~s~~~lLGlN~N~G~~I~LRLR~~d~~~Flp~~~V~~tlLHELaH~   80 (504)
                      |++|+.+++|..+|-.|.|.|+.|+|+.|..++++++.++||+|.|.| +|.+|||+++.++||.|+.|-.|++|||||+
T Consensus       136 L~~Lrad~gii~~mg~hrW~vg~l~el~g~~nt~v~~~~tLg~stnqG-~i~lrlrtdrkkgfR~y~tissTl~heLtr~  214 (278)
T KOG4842|consen  136 LDELRADQGIIEQMGLHRWFVGNLQELGGRANTRVNRYPTLGISTNQG-VIVLRLRTDRKKGFRHYETISSTLRHELTRE  214 (278)
T ss_pred             HHHHhhchhHHHHhcccceechhhhhcccccceeecCccceeeccccc-eEEEecccchhcccccCCCchHHHHhhhhhh
Confidence            689999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             hcCccchhHHHHHHHHHHHHHHhccccCCCeeecCCCCCCcccccccccCCCCCCccccCCCCCCCccHHHHHHHHHH
Q 010667           81 VYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTSHHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAY  158 (504)
Q Consensus        81 vhg~Hd~~F~~L~~~L~~E~~~l~~~~s~G~~LgG~~~~~~~~~~~~~~~~~~~g~rLGG~~~~~~~s~Re~aa~AAe  158 (504)
                      +|+.|+..||+|..++.+|..+++|..++|++.+....              --.+.+|+.......+.|+...+|||
T Consensus       215 v~~ehde~fyrLdrql~kek~~ad~~~srg~~~sde~~--------------~vdq~de~~p~D~l~~~rdl~~aaae  278 (278)
T KOG4842|consen  215 VAAEHDERFYRLDRQLGKEKNNADQIISRGISSSDEVV--------------IVDQDDEVLPGDTLIEVRDLTYAAAE  278 (278)
T ss_pred             HhhhhhhHHHHHHHHhCcccchhhhhcCCCceeeccee--------------ecccccCCCcccccchhhhhhhhhcC
Confidence            99999999999999999999999999999987653211              12467777766677788998888885

>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []

Probab=99.77  E-value=5.7e-19  Score=148.43  Aligned_cols=83  Identities=37%  Similarity=0.527  Sum_probs=67.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccccccccCCcccEEEEc---C
Q 010667          409 SPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLK---R  485 (504)
Q Consensus       409 ~~e~~~~al~tL~Kil~NIl~~P~e~KyRrIR~sN~~Fq~kV~~~~Ga~E~L~alGF~e~~~~de~g~ge~~LVL~---~  485 (504)
                      +.++..+|+++|.+||.||+.||.++|||+||++|++|+++|++++||.+||.++||++..       .+.||+|+   .
T Consensus         2 ~~~~~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g~~~~L~~~GF~~~~-------~~~~~vl~~~~~   74 (87)
T PF09409_consen    2 DPEAFQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPGARELLEALGFREVT-------DEEFLVLPEDSE   74 (87)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTTHHHHHHHHT-EE----------SSEEE----TT
T ss_pred             CHHHHHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChhHHHHHHHCCCEEec-------CCCEEEEecCCc
Confidence            4578899999999999999999999999999999999999999999999999999999986       26899999   3


Q ss_pred             CCHHHHHHHHHHh
Q 010667          486 NDLALLWLAKSSL  498 (504)
Q Consensus       486 ~d~~lL~~Aks~L  498 (504)
                      .++..|+.|++.|
T Consensus        75 ~~~~~l~~~~~~l   87 (87)
T PF09409_consen   75 PDLQHLQKALSEL   87 (87)
T ss_dssp             S-HHHHHHHHH--
T ss_pred             CCHHHHHHHHhcC
Confidence            3899999888765

This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.

>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=2.7e-18  Score=169.58  Aligned_cols=166  Identities=22%  Similarity=0.235  Sum_probs=123.8

Q ss_pred             cccccCcchh-hHhhhcCeeeceecccCCCCCCCCCCCcccccccCCccEEEEEeec-CCCCCccchHHHHHHHHHHHhh
Q 010667            2 HMLAADPGII-AIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRT-DDLKGFRKYESIKKTLLHELAH   79 (504)
Q Consensus         2 ~~L~~~a~i~-pIM~~~~w~V~~L~Ef~P~~~~~~s~~~lLGlN~N~G~~I~LRLR~-~d~~~Flp~~~V~~tlLHELaH   79 (504)
                      ..|++++..+ |||++|+|.|.++.++++.+      ..|+|+|||+|.+|.|+||. .+..+|+|++.+++|++|||||
T Consensus        49 ~llk~iahl~~p~mkEh~f~vti~~Dk~irn------q~~sg~nvn~gski~lslr~~~~e~~~lp~e~pmgtylhel~h  122 (278)
T KOG4842|consen   49 NLLKEIAHLVSPLMKEHHFKVTILVDKYIRN------QRLSGMNVNHGSKIMLSLRCSTDEFQFLPMECPMGTYLHELTH  122 (278)
T ss_pred             hhhhhhhhhhhhhhccccceeEEeehhHHHh------hhhhccccCCcceEEEEeeccccccccccccccchhhhhhhhh
Confidence            3578899888 99999999999999999986      78999999999999999997 5677899999999999999999


Q ss_pred             hhcCccchhHHHHHHHHHHHHH------HhccccCCCeeecCCCCCCccccc--cc---ccC--CCCCCccccCCCC---
Q 010667           80 MVYSEHDANFYGLDKQLNQEAV------ALDWTKSRGHTLSGVRHTSHHEDD--LF---VGD--SRSFSQKLGGNIS---  143 (504)
Q Consensus        80 ~vhg~Hd~~F~~L~~~L~~E~~------~l~~~~s~G~~LgG~~~~~~~~~~--~~---~~~--~~~~g~rLGG~~~---  143 (504)
                      ++.+||+++|++.++.|+..--      .+.|+.+-++.|+|+..-.....-  .+   .+.  -+.+..|+-|...   
T Consensus       123 ~lqgPhd~rfl~~L~~Lrad~gii~~mg~hrW~vg~l~el~g~~nt~v~~~~tLg~stnqG~i~lrlrtdrkkgfR~y~t  202 (278)
T KOG4842|consen  123 NLQGPHDKRFLNKLDELRADQGIIEQMGLHRWFVGNLQELGGRANTRVNRYPTLGISTNQGVIVLRLRTDRKKGFRHYET  202 (278)
T ss_pred             hhcCCChHHHHHHHHHHhhchhHHHHhcccceechhhhhcccccceeecCccceeeccccceEEEecccchhcccccCCC
Confidence            9999999999999999987542      233566777888875432100000  00   000  0112222222211   


Q ss_pred             ----CCCccHHHHHHHHHHHHHhhhccccCCCCC
Q 010667          144 ----DQLASARASSVAAAYRRLANASANSLGVSE  173 (504)
Q Consensus       144 ----~~~~s~Re~aa~AAerR~~d~~~~~~~~s~  173 (504)
                          .....+|++++++++++.+...+|..+...
T Consensus       203 issTl~heLtr~v~~ehde~fyrLdrql~kek~~  236 (278)
T KOG4842|consen  203 ISSTLRHELTREVAAEHDERFYRLDRQLGKEKNN  236 (278)
T ss_pred             chHHHHhhhhhhHhhhhhhHHHHHHHHhCcccch
Confidence                124678999999999999999998755443

>smart00580 PUG domain in protein kinases, N-glycanases and other nuclear proteins

Probab=98.97  E-value=6e-10  Score=88.50  Aligned_cols=49  Identities=31%  Similarity=0.632  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccc
Q 010667          415 TVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDV  469 (504)
Q Consensus       415 ~al~tL~Kil~NIl~~P~e~KyRrIR~sN~~Fq~kV~~~~Ga~E~L~alGF~e~~  469 (504)
                      .|+++|+|+++||++||+|.|      +|++||++|++++||.++|.++||....
T Consensus         1 ~sv~dLLr~irNi~~hp~e~k------~n~~~~~~l~~~pg~~~~l~~~gFp~l~   49 (58)
T smart00580        1 ESVRDLLRALRNILHHPREEK------GNPAIKERLGDVPGGFELYFTVGFPRLL   49 (58)
T ss_pred             CcHHHHHHHHHHHhhCcchhh------cCHHHHHHhcCCCcHHHHHHHcCCCccc
Confidence            378999999999999999999      9999999999999999999999999875

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori

Probab=98.51  E-value=9.3e-08  Score=90.36  Aligned_cols=62  Identities=23%  Similarity=0.287  Sum_probs=53.0

Q ss_pred             CcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHHhhhhcCccchhHHHHHHHHHHHHHHhc
Q 010667           38 KCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALD  104 (504)
Q Consensus        38 ~~lLGlN~N~G~~I~LRLR~~d~~~Flp~~~V~~tlLHELaH~vhg~Hd~~F~~L~~~L~~E~~~l~  104 (504)
                      ++.||-. +.--.|.|=+|-    .++|.+.|.+|++|||||..|.||++.||+++.++-+++.+..
T Consensus       138 ksrWGsc-~~~~~I~ln~~L----~~~P~~~idYVvvHEL~Hl~~~nHs~~Fw~~v~~~~Pd~k~~~  199 (205)
T PF01863_consen  138 KSRWGSC-SSKGNITLNWRL----VMAPPEVIDYVVVHELCHLRHPNHSKRFWALVEKYMPDYKERR  199 (205)
T ss_pred             hhccccC-CCCCcEEeeccc----ccCCccHHHHHHHHHHHHhccCCCCHHHHHHHHHHCcCHHHHH
Confidence            5578988 544567777666    4789999999999999999999999999999999999887765

The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=97.94  E-value=7.2e-06  Score=80.97  Aligned_cols=62  Identities=27%  Similarity=0.336  Sum_probs=50.7

Q ss_pred             CcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHHhhhhcCccchhHHHHHHHHHHHHHHhc
Q 010667           38 KCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALD  104 (504)
Q Consensus        38 ~~lLGlN~N~G~~I~LRLR~~d~~~Flp~~~V~~tlLHELaH~vhg~Hd~~F~~L~~~L~~E~~~l~  104 (504)
                      ++.||=..-.| .|.+-+|--    -.|.+.+.++++|||||..+++|+.+||+++..+-+++.++.
T Consensus       149 k~~WGScs~~~-~i~~~~~l~----~~p~~~i~YVvvHELaHLke~nHs~~Fw~lv~~~~P~~~~~~  210 (223)
T COG1451         149 KRRWGSCSKAG-EIRFNWRLV----MAPEEVIDYVVVHELAHLKEKNHSKRFWRLVEKYMPDYRAAK  210 (223)
T ss_pred             cceeeeecCCC-cEEeehhhh----cCCHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHCCChHHHH
Confidence            45677555566 666666653    378899999999999999999999999999999998887765

>smart00731 SprT SprT homologues

Probab=96.80  E-value=0.00097  Score=61.34  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             cchHHHHHHHHHHHhhhhcC------ccchhHHHHHHHHH
Q 010667           64 RKYESIKKTLLHELAHMVYS------EHDANFYGLDKQLN   97 (504)
Q Consensus        64 lp~~~V~~tlLHELaH~vhg------~Hd~~F~~L~~~L~   97 (504)
                      .|.+.|.+|++|||||....      +|++.||+++.++.
T Consensus        54 ~~~~~l~~~l~HEm~H~~~~~~g~~~~Hg~~f~~~~~~~~   93 (146)
T smart00731       54 NGRDRLRETLLHELCHAALYLFGRGYGHGDEWKRWMRQVN   93 (146)
T ss_pred             ccHHHHHhhHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHc
Confidence            46789999999999999988      99999999987664

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=95.60  E-value=0.012  Score=53.70  Aligned_cols=59  Identities=24%  Similarity=0.296  Sum_probs=39.7

Q ss_pred             cccccc-cCCccEEEEEeecCCCCCccchHHHHHHHHHHHhhhhc--------CccchhHHHHHHHHHH
Q 010667           39 CVLGFN-KNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVY--------SEHDANFYGLDKQLNQ   98 (504)
Q Consensus        39 ~lLGlN-~N~G~~I~LRLR~~d~~~Flp~~~V~~tlLHELaH~vh--------g~Hd~~F~~L~~~L~~   98 (504)
                      ..+|.- .+......|+|-.. .-...+.+.++.||+|||||...        .+|+..|.++..++..
T Consensus        30 ~~~G~~~~~~~~~~~I~ls~~-~~~~~~~~~~~~tL~HEm~H~~~~~~~~~~~~~Hg~~fk~~~~~ig~   97 (157)
T PF10263_consen   30 RTAGRCRYKRRSPCEIRLSPK-LLDRNPEEELIDTLLHEMAHAAAYVFGGGRRRGHGKEFKQWARRIGA   97 (157)
T ss_pred             CceEEEEECCCCceEEEECHH-HHHhhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHCC
Confidence            445652 23332344444441 11126789999999999999887        6999999998877754

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>KOG2699 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.77  E-value=0.011  Score=63.32  Aligned_cols=64  Identities=20%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccccccccCCcccEEEEcCC
Q 010667          416 VLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRN  486 (504)
Q Consensus       416 al~tL~Kil~NIl~~P~e~KyRrIR~sN~~Fq~kV~~~~Ga~E~L~alGF~e~~~~de~g~ge~~LVL~~~  486 (504)
                      +..++.+|..|++++|+...|+.|+..|..|...++.+.+|.+++..+||-...       +.++++++..
T Consensus       310 ~~~~~~~~~~~~ak~pd~~l~q~~f~~~~~~~~~~g~~~~a~~~~~l~~el~~~-------~~e~~~~p~~  373 (407)
T KOG2699|consen  310 AFLTLYTPFKNVAKDPDGELLQGIFLPNELLLARYGFVSEALEFMELPGELLQE-------GSEFLSLPSV  373 (407)
T ss_pred             HHHHhhcccchhccCcchhhhhhhhchhHHHHHHHhccccchhhhhhhhHHhhc-------cccccccccc
Confidence            888999999999999999999999999999999999999999999999999885       3678888764

>PRK04351 hypothetical protein; Provisional

Probab=91.95  E-value=0.16  Score=47.66  Aligned_cols=31  Identities=35%  Similarity=0.525  Sum_probs=24.8

Q ss_pred             hHHHHHHHHHHHhhh------h-cCccchhHHHHHHHH
Q 010667           66 YESIKKTLLHELAHM------V-YSEHDANFYGLDKQL   96 (504)
Q Consensus        66 ~~~V~~tlLHELaH~------v-hg~Hd~~F~~L~~~L   96 (504)
                      .+.+..|+.|||||.      . +.+|+..|..++.++
T Consensus        58 ~~~l~~vv~HElcH~~~~~~g~g~~h~g~~fk~~~~~v   95 (149)
T PRK04351         58 LEELIGIIKHELCHYHLHLEGKGYQHRDRDFKELLKQV   95 (149)
T ss_pred             HHHHHhhHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHh
Confidence            678999999999997      2 456889998877554

>PRK04860 hypothetical protein; Provisional

Probab=90.36  E-value=0.3  Score=46.50  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=25.3

Q ss_pred             chHHHHHHHHHHHhhhh-c---C---ccchhHHHHHHH
Q 010667           65 KYESIKKTLLHELAHMV-Y---S---EHDANFYGLDKQ   95 (504)
Q Consensus        65 p~~~V~~tlLHELaH~v-h---g---~Hd~~F~~L~~~   95 (504)
                      +.+.+..|+.|||||.+ |   |   +|+..|..++.+
T Consensus        59 ~~~~l~~~v~HEl~H~~~~~~~g~~~~Hg~ewk~lm~~   96 (160)
T PRK04860         59 QQAFIDEVVPHELAHLLVYQLFGRVAPHGKEWQWMMES   96 (160)
T ss_pred             cHHHHHhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            46889999999999975 2   3   999998888765

>KOG2699 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.34  E-value=0.28  Score=52.86  Aligned_cols=62  Identities=16%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             HHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHc
Q 010667          398 QKAIEMLRAEVSP-LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLV  463 (504)
Q Consensus       398 ~~Al~~L~~~n~~-e~~~~al~tL~Kil~NIl~~P~e~KyRrIR~sN~~Fq~kV~~~~Ga~E~L~al  463 (504)
                      -.++..+...+.+ +-...+.++..|+..|+-.||..+|||++ +.|..|+++|   .|+.+.|.++
T Consensus       152 ~ss~~~~~~~~k~~e~se~~~d~~~kqe~~~~~~pE~ek~R~r-l~~el~~~~v---~g~he~le~v  214 (407)
T KOG2699|consen  152 PSSLTKIFVNTKAKELSESGRDIRQKQEQNTERNPEREKERKR-LGNELLKEKV---LGCHEPLEAV  214 (407)
T ss_pred             chhhhhccccccchhhhhhhhhhHHHhhhhhccchhhhhhhhc-cccchhhccc---ccccchHHHH
Confidence            3444455555444 44678899999999999999999999988 9999999999   6888888887

>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]

Probab=85.53  E-value=0.94  Score=43.13  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhhhh-------cCccchhHHHHHHHH
Q 010667           67 ESIKKTLLHELAHMV-------YSEHDANFYGLDKQL   96 (504)
Q Consensus        67 ~~V~~tlLHELaH~v-------hg~Hd~~F~~L~~~L   96 (504)
                      +.|..|+.|||||..       +-|||..|..++.++
T Consensus        59 ~f~~~vV~HELaHl~ly~~~gr~~phg~ewk~lm~qV   95 (156)
T COG3091          59 DFIEQVVPHELAHLHLYQEFGRYKPHGKEWKLLMQQV   95 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHh
Confidence            468899999999974       349999999888755

>KOG3854 consensus SPRT-like metalloprotease [Function unknown]

Probab=80.74  E-value=1.3  Score=48.74  Aligned_cols=41  Identities=27%  Similarity=0.331  Sum_probs=28.7

Q ss_pred             CCccEEEEEeecCCCCCccchHHHHHHHHHHHhhh-------hcCccchhHHH
Q 010667           46 NHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHM-------VYSEHDANFYG   91 (504)
Q Consensus        46 N~G~~I~LRLR~~d~~~Flp~~~V~~tlLHELaH~-------vhg~Hd~~F~~   91 (504)
                      ++-.+|+|-+---     -.-+.|+.||+|||||-       .+..|++.|..
T Consensus       333 kr~A~IeLs~kV~-----tTAERir~TLiHEmCHaAaWv~dr~e~gHGd~wKr  380 (505)
T KOG3854|consen  333 KRYAKIELSDKVC-----TTAERIRDTLIHEMCHAAAWVFDREELGHGDNWKR  380 (505)
T ss_pred             CceeEEEehhhhh-----hHHHHHHHHHHHHHHHHHHhhccccccCcchHHHH
Confidence            3445677755441     12378999999999994       27899988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	504
2ccq_A	99	P97, peptide N-glycanase homolog; glycoprotein; 1.	1e-17
2d5u_A	124	N-glycanase 1; pngase, hydrolase; NMR {Mus musculu	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A Length = 99

 Score = 77.3 bits (190), Expect = 1e-17
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 397 LQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAA 456
              A+  L  + +P       + L     N++ +P++ KY+ +R  N      +   + A
Sbjct: 3   ASPAVAELC-QNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGA 61

Query: 457 MEILFLVGFNEDVVLDEIGKAETYLVLKRN-DLALLWLAKSSLET 500
           +E LF +GF E          ET+L+  +   +  L   +  +  
Sbjct: 62  VECLFEMGFEEG---------ETHLIFPKKASVEQLQKIRDLIAI 97

>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1 Length = 124

 Score = 69.8 bits (170), Expect = 1e-14
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 395 SRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYK 454
           S    A+  L  + +P       + L     N++ +P + KY+ +R  N      +   +
Sbjct: 16  SSASPAVAELC-QNTPETFLEASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVR 74

Query: 455 AAMEILFLVGFNEDVVLDEIGKAETYLVLKRN-DLALLWLAKSSLET 500
            A+E LF +GF E          ET+L+  +   +  L   +  +  
Sbjct: 75  GAVECLFEMGFEEG---------ETHLIFPKKASVEQLQKIRDLIAI 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 64/476 (13%), Positives = 129/476 (27%), Gaps = 166/476 (34%)

Query: 118 HTSHHED-----------DL-------FVGDSRSFSQKLGGNISDQLASARASSVAAAYR 159
           H  HH D           D+       FV +   F  K   ++ D   S  +        
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDN---FDCK---DVQDMPKSILSKEE----- 50

Query: 160 RLANASANSLGVSEVHEEPDPDDSGL----IMLGESHHTVSAAKGSLD------IESPSR 209
                      +  +    D     L     +L +    V      +       + SP +
Sbjct: 51  -----------IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 210 DQWKGHEPDPDDDPGYENKLEPDPDDSQDGEPLEPENYSDPEMV-------QQVSPKK-- 260
            + +             ++L        D +     N S  +          ++ P K  
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLY------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 261 ------------LAAT--NPYEEPDPDDSETAW-KSGVVVEPES-------LCSQLMEVD 298
                       +A      Y+     D +  W        PE+       L  Q+   +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-N 212

Query: 299 DTVQLRRTSAEPDP-DDSEAELKIKIVNDTTEDQGHLYKAQREPDPDELLANEVVQQEPD 357
            T +   +S         +AEL+  +              + +P  + LL   V+     
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLL--------------KSKPYENCLL---VL----- 250

Query: 358 PDDNLVQLQEISSMKIDEPDPDDQEL-----RSIQDTVTVVCSRLQKAIEMLRAEVSPLE 412
             +  VQ  +      +  +   + L     + + D ++   +    +++     ++P E
Sbjct: 251 -LN--VQNAKA----WNAFNLSCKILLTTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDE 302

Query: 413 STTVL--------QTL----CKI-----------IRNVIEHPDETKYKRLRKANPIIQRS 449
             ++L        Q L                  IR+ +   D  K+    K   II+ S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 450 VAN-----YKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRNDLALLWLAKSSLET 500
           +       Y+   + L +  F        I      ++     L+L+W      + 
Sbjct: 363 LNVLEPAEYRKMFDRLSV--FPPSA---HI----PTIL-----LSLIWFDVIKSDV 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 62/520 (11%), Positives = 146/520 (28%), Gaps = 173/520 (33%)

Query: 26  ELAPVGYVGV-----SPKCVLGFNKNHGEEISLRLRTDDLK----------GFRKYESIK 70
           EL P   V +     S K  +               +  ++            +   S +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWV---------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 71  KTL--LHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTSHHEDDLFV 128
             L  L +L + +    D N+       +   + +   ++    L  +  +  +E+ L V
Sbjct: 197 TVLEMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLV 249

Query: 129 GDS-------RSF---SQKL----GGNISDQLASARASSVAAAYRRLANASANSLGV--- 171
             +        +F    + L       ++D L++A  + ++  +  +         +   
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 172 ---SEVHEEPDPDDSG----LIMLGESHHTVSAAKGSLDIESPSR-DQWKGHEPDPDDDP 223
                  + P    +     L ++ ES             +  +  D WK      + D 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIR-----------DGLATWDNWK----HVNCDK 354

Query: 224 GYENKLEP-----DPDDSQDGEPLEPENYSD----PEMVQQVSPKKLAATNPYEEPDPDD 274
                +E      +P + +       + +      P     +    L             
Sbjct: 355 -LTTIIESSLNVLEPAEYR-------KMFDRLSVFPPSAH-IPTILL------------- 392

Query: 275 SETAWKSGVVVEPESLCSQLMEVDDTVQLRRTSAEPDPDDSEA-------ELKIKIVNDT 327
               W   +  +   + ++L         + +  E  P +S         ELK+K+ N+ 
Sbjct: 393 -SLIWFDVIKSDVMVVVNKLH--------KYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 328 TEDQGH-----LYKAQREPDPDELLANEVVQQEPDPDDN------------LVQLQEISS 370
                H      Y   +  D D+L+        P   D             +   + ++ 
Sbjct: 444 ---ALHRSIVDHYNIPKTFDSDDLI--------PPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 371 M------------KIDEPDPDDQELRSIQDTVTVV----------CSRLQKAIEMLRAEV 408
                        KI           SI +T+  +            + ++ +  +   +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 409 SPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQR 448
             +E   +      ++R  +   DE  ++   +A+  +QR
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFE---EAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	504
2d5u_A	124	N-glycanase 1; pngase, hydrolase; NMR {Mus musculu	99.84
2ccq_A	99	P97, peptide N-glycanase homolog; glycoprotein; 1.	99.83

>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1

Probab=99.84  E-value=2.6e-21  Score=172.84  Aligned_cols=98  Identities=21%  Similarity=0.327  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccccccc
Q 010667          394 CSRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDE  473 (504)
Q Consensus       394 ~e~L~~Al~~L~~~n~~e~~~~al~tL~Kil~NIl~~P~e~KyRrIR~sN~~Fq~kV~~~~Ga~E~L~alGF~e~~~~de  473 (504)
                      .+.|++++..|+. |..+++.+|++||.|||.||+.||+|+|||+||++|++|+++|++++||++||.++||++..    
T Consensus        15 ~~~l~~~l~~L~~-n~~~~~~~a~~tL~kil~NIl~~P~e~KyRkIRl~N~~f~~~V~~~~Ga~e~L~a~GF~~~~----   89 (124)
T 2d5u_A           15 SSSASPAVAELCQ-NTPETFLEASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGE----   89 (124)
T ss_dssp             CSSCCHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHSSSCGGGSEEECCCHHHHHTTSSSTTHHHHHHHHTCBCCS----
T ss_pred             hHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHcCCCcccceeeecCCHHHHHHhcCCccHHHHHHHcccccCC----
Confidence            4568889999975 46889999999999999999999999999999999999999999999999999999998872    


Q ss_pred             cCCcccEEEEcCC-CHHHHHHHHHHhhhh
Q 010667          474 IGKAETYLVLKRN-DLALLWLAKSSLETC  501 (504)
Q Consensus       474 ~g~ge~~LVL~~~-d~~lL~~Aks~Le~~  501 (504)
                           ++|||+.+ ++..|..++..|...
T Consensus        90 -----~~lvlp~~~~~~~l~~~~d~L~~~  113 (124)
T 2d5u_A           90 -----THLIFPKKASVEQLQKIRDLIAIE  113 (124)
T ss_dssp             -----SEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             -----CeeecCCCCCHHHHHHHHHHHHHH
Confidence                 45999987 899999988887653

>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A

Probab=99.83  E-value=5.5e-21  Score=164.63  Aligned_cols=93  Identities=22%  Similarity=0.365  Sum_probs=83.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccccccccCCc
Q 010667          398 QKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKA  477 (504)
Q Consensus       398 ~~Al~~L~~~n~~e~~~~al~tL~Kil~NIl~~P~e~KyRrIR~sN~~Fq~kV~~~~Ga~E~L~alGF~e~~~~de~g~g  477 (504)
                      +.++..|. .|..+++.+|++||.||+.||+.||+|+|||+||++|++|+++|++++||++||.++||++..        
T Consensus         4 ~~~l~~L~-~n~~~~~~~a~~tL~k~l~Nil~~P~e~KyR~Ir~~N~~f~~~v~~~~G~~e~L~a~GF~~~~--------   74 (99)
T 2ccq_A            4 SPAVAELC-QNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGE--------   74 (99)
T ss_dssp             SHHHHHHT-SSCHHHHHHHHHHHHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTTSTTHHHHHHHHTCEECS--------
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHcCCCCcccceeecCCHHHHHHhcCCccHHHHHHHccceeCC--------
Confidence            46777775 456889999999999999999999999999999999999999999999999999999999873        


Q ss_pred             ccEEEEcCC-CHHHHHHHHHHhhh
Q 010667          478 ETYLVLKRN-DLALLWLAKSSLET  500 (504)
Q Consensus       478 e~~LVL~~~-d~~lL~~Aks~Le~  500 (504)
                       +.||||.+ ++..|..++..|..
T Consensus        75 -~~l~lp~~~~~~~l~~~~d~l~~   97 (99)
T 2ccq_A           75 -THLIFPKKASVEQLQKIRDLIAI   97 (99)
T ss_dssp             -SEEECCTTSCHHHHHHHHHHHHT
T ss_pred             -CeeecCCCCCHHHHHHHHHHHHh
Confidence             45999987 99999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	504
d2ccqa1	99	d.314.1.1 (A:11-109) N-glycanase 1, N-terminal dom	6e-17

>d2ccqa1 d.314.1.1 (A:11-109) N-glycanase 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: Alpha and beta proteins (a+b)
fold: PUG domain-like
superfamily: PUG domain-like
family: PUG domain
domain: N-glycanase 1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (182), Expect = 6e-17
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 415 TVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEI 474
              + L     N++ +P++ KY+ +R  N      +   + A+E LF +GF E       
Sbjct: 20  EASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEG------ 73

Query: 475 GKAETYLVLKRN-DLALLWLAKSSLET 500
              ET+L+  +   +  L   +  +  
Sbjct: 74  ---ETHLIFPKKASVEQLQKIRDLIAI 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	504
d2ccqa1	99	N-glycanase 1, N-terminal domain {Human (Homo sapi	99.81

>d2ccqa1 d.314.1.1 (A:11-109) N-glycanase 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PUG domain-like
superfamily: PUG domain-like
family: PUG domain
domain: N-glycanase 1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3e-20  Score=158.13  Aligned_cols=89  Identities=22%  Similarity=0.397  Sum_probs=79.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccccccccCCcccE
Q 010667          401 IEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETY  480 (504)
Q Consensus       401 l~~L~~~n~~e~~~~al~tL~Kil~NIl~~P~e~KyRrIR~sN~~Fq~kV~~~~Ga~E~L~alGF~e~~~~de~g~ge~~  480 (504)
                      +..+. +|+++....|++||.||+.||++||.|+|||+||++|++|+++|++++||++||.++||++.         ++|
T Consensus         7 ~~~l~-~n~~~~~~~~l~~L~ki~~NIl~~P~e~KyR~Ir~sN~~f~~~v~~~~ga~e~L~~~GF~e~---------~~~   76 (99)
T d2ccqa1           7 VAELC-QNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEG---------ETH   76 (99)
T ss_dssp             HHHHT-SSCHHHHHHHHHHHHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTTSTTHHHHHHHHTCEEC---------SSE
T ss_pred             HHHHH-hCCHHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCCHHHHHHHcccccHHHHHHHcCceeC---------Cce
Confidence            33433 45788999999999999999999999999999999999999999999999999999999864         579


Q ss_pred             EEEcCC-CHHHHHHHHHHhh
Q 010667          481 LVLKRN-DLALLWLAKSSLE  499 (504)
Q Consensus       481 LVL~~~-d~~lL~~Aks~Le  499 (504)
                      |||+.+ +...|...+..|.
T Consensus        77 lvlp~~~~~~~l~~~rd~L~   96 (99)
T d2ccqa1          77 LIFPKKASVEQLQKIRDLIA   96 (99)
T ss_dssp             EECCTTSCHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHHHHH
Confidence            999987 8888888887764