Citrus Sinensis ID: 010671
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZ11 | 759 | Probable glycerophosphory | yes | no | 0.878 | 0.583 | 0.609 | 1e-167 | |
| Q9FJ62 | 766 | Probable glycerophosphory | no | no | 0.894 | 0.588 | 0.608 | 1e-165 | |
| Q7Y208 | 763 | Probable glycerophosphory | no | no | 0.875 | 0.577 | 0.601 | 1e-163 | |
| P96236 | 274 | Probable glycerophosphory | yes | no | 0.126 | 0.233 | 0.409 | 0.0002 |
| >sp|Q9SZ11|GLPQ2_ARATH Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=3 | Back alignment and function desciption |
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Score = 589 bits (1518), Expect = e-167, Method: Compositional matrix adjust.
Identities = 275/451 (60%), Positives = 353/451 (78%), Gaps = 8/451 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 3 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 60
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 61 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 120
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 121 TSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 180
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 181 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 240
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 241 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 300
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 301 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 360
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 361 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 420
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTL 499
F + +TT+PE+ + I++FSL W EIQTL
Sbjct: 421 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTL 451
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4EC: 6 |
| >sp|Q9FJ62|GLPQ1_ARATH Probable glycerophosphoryl diester phosphodiesterase 1 OS=Arabidopsis thaliana GN=GPDL1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7Y208|GLPQ3_ARATH Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2 | Back alignment and function description |
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| >sp|P96236|GLPQ1_MYCTU Probable glycerophosphoryl diester phosphodiesterase 1 OS=Mycobacterium tuberculosis GN=glpQ1 PE=2 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | ||||||
| 255576268 | 768 | glycerophosphoryl diester phosphodiester | 0.869 | 0.570 | 0.685 | 0.0 | |
| 225460805 | 757 | PREDICTED: probable glycerophosphoryl di | 0.865 | 0.575 | 0.681 | 1e-179 | |
| 147811111 | 642 | hypothetical protein VITISV_027762 [Viti | 0.853 | 0.669 | 0.684 | 1e-178 | |
| 356524319 | 761 | PREDICTED: probable glycerophosphoryl di | 0.871 | 0.576 | 0.676 | 1e-176 | |
| 83281191 | 752 | putative glycerophosphoryl diester phosp | 0.884 | 0.593 | 0.655 | 1e-175 | |
| 356552745 | 754 | PREDICTED: probable glycerophosphoryl di | 0.829 | 0.554 | 0.696 | 1e-173 | |
| 356501592 | 753 | PREDICTED: probable glycerophosphoryl di | 0.839 | 0.561 | 0.679 | 1e-172 | |
| 297841367 | 708 | glycerophosphoryl diester phosphodiester | 0.875 | 0.622 | 0.610 | 1e-166 | |
| 18416801 | 759 | putative glycerophosphoryl diester phosp | 0.878 | 0.583 | 0.609 | 1e-165 | |
| 4455192 | 770 | putative protein [Arabidopsis thaliana] | 0.888 | 0.581 | 0.605 | 1e-165 |
| >gi|255576268|ref|XP_002529027.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] gi|223531507|gb|EEF33338.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/442 (68%), Positives = 372/442 (84%), Gaps = 4/442 (0%)
Query: 58 LVSALVVLHCGVIAQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLI 117
+V+A V+L+ + + VSAQGS + W+TL+G+PP V+ARGGFSGIFPDSSS AY L LI
Sbjct: 20 VVAAFVLLNS-LASLVSAQGSGTS--WKTLSGNPPLVIARGGFSGIFPDSSSAAYQLALI 76
Query: 118 TSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDY 177
T P +ILWCDVQLTKD GIC PDL+LDN+++I+ +FK + KNYLVNG PT GWFS+D+
Sbjct: 77 TGVPDLILWCDVQLTKDGVGICAPDLRLDNSTDISLVFKNKDKNYLVNGAPTQGWFSVDF 136
Query: 178 TLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSM 237
T NDLS+++L QGVYSR++KFDGN F I TV+++ +KPP +WLNIQHDAF+ QHNLSM
Sbjct: 137 TFNDLSSVVLTQGVYSRSNKFDGNLFPIQTVENVT-GLKPPSIWLNIQHDAFFTQHNLSM 195
Query: 238 RSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL 297
RS+VLS+S+ VV+NYISSPE+ FLR IA+RF P +TKLVFRFLG +EIEP+TNQTY +L
Sbjct: 196 RSYVLSLSKKVVINYISSPEMAFLRGIASRFNPKVTKLVFRFLGPNEIEPSTNQTYSALS 255
Query: 298 KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFN 357
KNLTFIKTFASGIL+PK YIWPVD SLYL PHT++V DAHK LEVFAS F ND+P SFN
Sbjct: 256 KNLTFIKTFASGILIPKGYIWPVDASLYLQPHTSVVSDAHKAGLEVFASEFYNDVPFSFN 315
Query: 358 YSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGAS 417
YSYDP++EYLSF+DNGDFS+DGVLSDFP+TPS A DCF+ +G+NA+K +N+LVISKNGAS
Sbjct: 316 YSYDPISEYLSFVDNGDFSIDGVLSDFPITPSGAFDCFSQIGQNATKQSNVLVISKNGAS 375
Query: 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI 477
GDYP CT++AYQKAISDG D IDCPVQMSKDG+PFCLS INLI+ST AQ+ + S+ I
Sbjct: 376 GDYPGCTDMAYQKAISDGADVIDCPVQMSKDGIPFCLSTINLIDSTKVAQTNYGSLAANI 435
Query: 478 PEIMAGSGIFSFSLIWDEIQTL 499
PE+ GSGI++F+L W +IQTL
Sbjct: 436 PELEKGSGIYTFNLTWSQIQTL 457
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460805|ref|XP_002276757.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 1 [Vitis vinifera] gi|297737518|emb|CBI26719.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147811111|emb|CAN61355.1| hypothetical protein VITISV_027762 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356524319|ref|XP_003530777.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|83281191|dbj|BAE53680.1| putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] gi|115500890|dbj|BAF34116.1| glycerophosphodiesterase-like protein [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|356552745|ref|XP_003544723.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356501592|ref|XP_003519608.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297841367|ref|XP_002888565.1| glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297334406|gb|EFH64824.1| glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18416801|ref|NP_567755.1| putative glycerophosphoryl diester phosphodiesterase 2 [Arabidopsis thaliana] gi|332278205|sp|Q9SZ11.3|GLPQ2_ARATH RecName: Full=Probable glycerophosphoryl diester phosphodiesterase 2; Flags: Precursor gi|332659838|gb|AEE85238.1| putative glycerophosphoryl diester phosphodiesterase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|4455192|emb|CAB36515.1| putative protein [Arabidopsis thaliana] gi|7269521|emb|CAB79524.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | ||||||
| TAIR|locus:2116377 | 759 | SHV3 "SHAVEN 3" [Arabidopsis t | 0.859 | 0.570 | 0.596 | 1.5e-145 | |
| TAIR|locus:2173977 | 766 | SVL1 "SHV3-like 1" [Arabidopsi | 0.843 | 0.554 | 0.616 | 2.2e-144 | |
| TAIR|locus:2085710 | 729 | SVL3 "SHV3-like 3" [Arabidopsi | 0.805 | 0.556 | 0.555 | 7.2e-123 | |
| TAIR|locus:2155816 | 753 | SVL4 "SHV3-like 4" [Arabidopsi | 0.853 | 0.571 | 0.498 | 1.2e-111 | |
| TAIR|locus:2161248 | 750 | SVL5 "SHV3-like 5" [Arabidopsi | 0.837 | 0.562 | 0.498 | 3.3e-111 | |
| TAIR|locus:2019642 | 392 | GDPD5 "glycerophosphodiester p | 0.275 | 0.354 | 0.283 | 6.1e-17 | |
| TAIR|locus:2142823 | 372 | GDPD6 "glycerophosphodiester p | 0.309 | 0.419 | 0.245 | 3.8e-14 |
| TAIR|locus:2116377 SHV3 "SHAVEN 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1422 (505.6 bits), Expect = 1.5e-145, P = 1.5e-145
Identities = 262/439 (59%), Positives = 332/439 (75%)
Query: 67 CGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSA 120
CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS AY+ ++TS
Sbjct: 13 CGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAILTSV 72
Query: 121 PSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLN 180
P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVPT GWF+ID++L
Sbjct: 73 PDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVPTSGWFTIDFSLK 132
Query: 181 DLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXX 240
DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDAFYAQHN
Sbjct: 133 DLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDAFYAQHNLSMSSF 192
Query: 241 XXXXXXXXXXNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300
++ISSPEVNF + IA RF + LVFRFLG+ E EPTTN+TYGS+L NL
Sbjct: 193 LVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPTTNRTYGSILSNL 252
Query: 301 TFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSY 360
TF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S FANDI I+ +YS+
Sbjct: 253 TFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGFANDIDIAHDYSF 312
Query: 361 DPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDY 420
DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K + LVI+K+GASGDY
Sbjct: 313 DPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDFLVITKDGASGDY 372
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
P CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + + F + +TT+PE+
Sbjct: 373 PGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLTAFRNRSTTVPEL 432
Query: 481 MAGSGIFSFSLIWDEIQTL 499
+ I++FSL W EIQTL
Sbjct: 433 GSLGAIYTFSLTWAEIQTL 451
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| TAIR|locus:2173977 SVL1 "SHV3-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2085710 SVL3 "SHV3-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155816 SVL4 "SHV3-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2161248 SVL5 "SHV3-like 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2019642 GDPD5 "glycerophosphodiester phosphodiesterase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2142823 GDPD6 "glycerophosphodiester phosphodiesterase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 504 | |||
| cd08603 | 299 | cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester | 1e-170 | |
| cd08571 | 302 | cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph | 1e-112 | |
| cd08604 | 300 | cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester | 1e-47 | |
| cd08571 | 302 | cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph | 7e-41 | |
| cd08602 | 309 | cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester | 1e-34 | |
| cd08559 | 296 | cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g | 2e-25 | |
| cd08604 | 300 | cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester | 1e-16 | |
| cd08559 | 296 | cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g | 3e-12 | |
| cd08602 | 309 | cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester | 6e-12 | |
| pfam03009 | 238 | pfam03009, GDPD, Glycerophosphoryl diester phospho | 1e-10 | |
| cd08600 | 318 | cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p | 7e-10 | |
| cd08556 | 189 | cd08556, GDPD, Glycerophosphodiester phosphodieste | 4e-08 | |
| COG0584 | 257 | COG0584, UgpQ, Glycerophosphoryl diester phosphodi | 5e-08 | |
| cd08603 | 299 | cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester | 2e-07 | |
| cd08601 | 256 | cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester p | 4e-07 | |
| cd08600 | 318 | cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p | 1e-06 | |
| cd08563 | 230 | cd08563, GDPD_TtGDE_like, Glycerophosphodiester ph | 6e-06 | |
| cd08570 | 234 | cd08570, GDPD_YPL206cp_fungi, Glycerophosphodieste | 1e-05 | |
| cd08581 | 229 | cd08581, GDPD_like_1, Glycerophosphodiester phosph | 2e-05 | |
| cd08582 | 233 | cd08582, GDPD_like_2, Glycerophosphodiester phosph | 9e-05 | |
| cd08580 | 263 | cd08580, GDPD_Rv2277c_like, Glycerophosphodiester | 2e-04 | |
| cd08566 | 240 | cd08566, GDPD_AtGDE_like, Glycerophosphodiester ph | 8e-04 | |
| PRK11143 | 355 | PRK11143, glpQ, glycerophosphodiester phosphodiest | 0.001 | |
| cd08575 | 264 | cd08575, GDPD_GDE4_like, Glycerophosphodiester pho | 0.001 | |
| cd08562 | 229 | cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester p | 0.001 | |
| COG0584 | 257 | COG0584, UgpQ, Glycerophosphoryl diester phosphodi | 0.002 | |
| PRK11143 | 355 | PRK11143, glpQ, glycerophosphodiester phosphodiest | 0.002 | |
| cd08561 | 249 | cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glyceropho | 0.004 |
| >gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 481 bits (1239), Expect = e-170
Identities = 193/300 (64%), Positives = 235/300 (78%), Gaps = 1/300 (0%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+ARGGFSG+FPDSS AY +S+P V LWCD+QLTKD GIC PDL LDN++ I
Sbjct: 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTI 60
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDM 211
A+++ ++K Y VNGV T GWFS+D+TL +L + L QG++SRT FDG + I TV+D+
Sbjct: 61 ARVYPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQ-YPISTVEDV 119
Query: 212 ARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPS 271
KP GLWLN+QHDAFY QHNLSM S++LS+S++V V+YISSPEV FL+SI R +
Sbjct: 120 VTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVDYISSPEVGFLKSIGGRVGRN 179
Query: 272 MTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331
TKLVFRFL K ++EP+TNQTYGS+LKNLTFIKTFASGILVPK YIWPVD YL P T+
Sbjct: 180 GTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239
Query: 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391
+V DAHK LEV+AS FAND IS+NYSYDP+ EYLSF+ NG+FSVDGVLSDFP+T S A
Sbjct: 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASEA 299
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This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I, the first GDPD domain of SHV3 and SVLs. Length = 299 |
| >gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
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| >gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
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| >gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
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| >gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
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| >gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
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| >gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family | Back alignment and domain information |
|---|
| >gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176512 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >gnl|CDD|176524 cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >gnl|CDD|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176505 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|176504 cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| cd08603 | 299 | GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08571 | 302 | GDPD_SHV3_plant Glycerophosphodiester phosphodiest | 100.0 | |
| cd08602 | 309 | GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08604 | 300 | GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi | 100.0 | |
| PRK11143 | 355 | glpQ glycerophosphodiester phosphodiesterase; Prov | 100.0 | |
| cd08600 | 318 | GDPD_EcGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08560 | 356 | GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08559 | 296 | GDPD_periplasmic_GlpQ_like Periplasmic glycerophos | 100.0 | |
| cd08601 | 256 | GDPD_SaGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08580 | 263 | GDPD_Rv2277c_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 100.0 | |
| cd08610 | 316 | GDPD_GDE6 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08612 | 300 | GDPD_GDE4 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08609 | 315 | GDPD_GDE3 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08608 | 351 | GDPD_GDE2 Glycerophosphodiester phosphodiesterase | 100.0 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 100.0 | |
| cd08581 | 229 | GDPD_like_1 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08575 | 264 | GDPD_GDE4_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08582 | 233 | GDPD_like_2 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08565 | 235 | GDPD_pAtGDE_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08568 | 226 | GDPD_TmGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08567 | 263 | GDPD_SpGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08572 | 293 | GDPD_GDE5_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08573 | 258 | GDPD_GDE1 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08607 | 290 | GDPD_GDE5 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08570 | 234 | GDPD_YPL206cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08561 | 249 | GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste | 100.0 | |
| cd08606 | 286 | GDPD_YPL110cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08566 | 240 | GDPD_AtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08605 | 282 | GDPD_GDE5_like_1_plant Glycerophosphodiester phosp | 100.0 | |
| cd08613 | 309 | GDPD_GDE4_like_1 Glycerophosphodiester phosphodies | 100.0 | |
| COG0584 | 257 | UgpQ Glycerophosphoryl diester phosphodiesterase [ | 100.0 | |
| cd08585 | 237 | GDPD_like_3 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08583 | 237 | PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic | 100.0 | |
| PF03009 | 256 | GDPD: Glycerophosphoryl diester phosphodiesterase | 100.0 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 99.98 | |
| cd08555 | 179 | PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi | 99.97 | |
| cd08603 | 299 | GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi | 99.91 | |
| KOG2258 | 341 | consensus Glycerophosphoryl diester phosphodiester | 99.91 | |
| cd08604 | 300 | GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi | 99.9 | |
| cd08578 | 300 | GDPD_NUC-2_fungi Putative glycerophosphodiester ph | 99.89 | |
| cd08571 | 302 | GDPD_SHV3_plant Glycerophosphodiester phosphodiest | 99.89 | |
| cd08560 | 356 | GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi | 99.88 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 99.88 | |
| cd08602 | 309 | GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie | 99.87 | |
| cd08609 | 315 | GDPD_GDE3 Glycerophosphodiester phosphodiesterase | 99.86 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 99.86 | |
| cd08608 | 351 | GDPD_GDE2 Glycerophosphodiester phosphodiesterase | 99.86 | |
| cd08600 | 318 | GDPD_EcGlpQ_like Glycerophosphodiester phosphodies | 99.86 | |
| cd08610 | 316 | GDPD_GDE6 Glycerophosphodiester phosphodiesterase | 99.85 | |
| cd08581 | 229 | GDPD_like_1 Glycerophosphodiester phosphodiesteras | 99.85 | |
| PRK11143 | 355 | glpQ glycerophosphodiester phosphodiesterase; Prov | 99.85 | |
| cd08580 | 263 | GDPD_Rv2277c_like Glycerophosphodiester phosphodie | 99.85 | |
| cd08612 | 300 | GDPD_GDE4 Glycerophosphodiester phosphodiesterase | 99.84 | |
| cd08559 | 296 | GDPD_periplasmic_GlpQ_like Periplasmic glycerophos | 99.83 | |
| cd08584 | 192 | PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic | 99.83 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 99.83 | |
| cd08568 | 226 | GDPD_TmGDE_like Glycerophosphodiester phosphodiest | 99.82 | |
| cd08575 | 264 | GDPD_GDE4_like Glycerophosphodiester phosphodieste | 99.82 | |
| cd08573 | 258 | GDPD_GDE1 Glycerophosphodiester phosphodiesterase | 99.82 | |
| cd08566 | 240 | GDPD_AtGDE_like Glycerophosphodiester phosphodiest | 99.82 | |
| KOG2258 | 341 | consensus Glycerophosphoryl diester phosphodiester | 99.81 | |
| cd08601 | 256 | GDPD_SaGlpQ_like Glycerophosphodiester phosphodies | 99.81 | |
| cd08582 | 233 | GDPD_like_2 Glycerophosphodiester phosphodiesteras | 99.81 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 99.81 | |
| cd08565 | 235 | GDPD_pAtGDE_like Glycerophosphodiester phosphodies | 99.8 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 99.8 | |
| cd08570 | 234 | GDPD_YPL206cp_fungi Glycerophosphodiester phosphod | 99.8 | |
| COG0584 | 257 | UgpQ Glycerophosphoryl diester phosphodiesterase [ | 99.79 | |
| cd08567 | 263 | GDPD_SpGDE_like Glycerophosphodiester phosphodiest | 99.79 | |
| cd08561 | 249 | GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste | 99.78 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 99.78 | |
| cd08613 | 309 | GDPD_GDE4_like_1 Glycerophosphodiester phosphodies | 99.78 | |
| cd08572 | 293 | GDPD_GDE5_like Glycerophosphodiester phosphodieste | 99.78 | |
| cd08585 | 237 | GDPD_like_3 Glycerophosphodiester phosphodiesteras | 99.77 | |
| cd08607 | 290 | GDPD_GDE5 Glycerophosphodiester phosphodiesterase | 99.77 | |
| cd08606 | 286 | GDPD_YPL110cp_fungi Glycerophosphodiester phosphod | 99.76 | |
| PF03009 | 256 | GDPD: Glycerophosphoryl diester phosphodiesterase | 99.74 | |
| cd08605 | 282 | GDPD_GDE5_like_1_plant Glycerophosphodiester phosp | 99.71 | |
| cd08583 | 237 | PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic | 99.7 | |
| cd08555 | 179 | PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi | 99.63 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 99.56 | |
| cd08576 | 265 | GDPD_like_SMaseD_PLD Glycerophosphodiester phospho | 99.21 | |
| cd08584 | 192 | PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic | 99.12 | |
| cd08577 | 228 | PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic | 99.11 | |
| cd08578 | 300 | GDPD_NUC-2_fungi Putative glycerophosphodiester ph | 98.61 | |
| cd08592 | 229 | PI-PLCc_gamma Catalytic domain of metazoan phospho | 98.02 | |
| cd08592 | 229 | PI-PLCc_gamma Catalytic domain of metazoan phospho | 98.01 | |
| PF13653 | 30 | GDPD_2: Glycerophosphoryl diester phosphodiesteras | 97.89 | |
| cd08627 | 229 | PI-PLCc_gamma1 Catalytic domain of metazoan phosph | 97.86 | |
| cd08627 | 229 | PI-PLCc_gamma1 Catalytic domain of metazoan phosph | 97.85 | |
| KOG2421 | 417 | consensus Predicted starch-binding protein [Genera | 97.61 | |
| KOG2421 | 417 | consensus Predicted starch-binding protein [Genera | 97.34 | |
| cd08597 | 260 | PI-PLCc_PRIP_metazoa Catalytic domain of metazoan | 97.2 | |
| cd08597 | 260 | PI-PLCc_PRIP_metazoa Catalytic domain of metazoan | 97.19 | |
| smart00148 | 135 | PLCXc Phospholipase C, catalytic domain (part); do | 96.76 | |
| smart00148 | 135 | PLCXc Phospholipase C, catalytic domain (part); do | 96.67 | |
| cd08577 | 228 | PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic | 96.55 | |
| cd08594 | 227 | PI-PLCc_eta Catalytic domain of metazoan phosphoin | 95.36 | |
| cd08594 | 227 | PI-PLCc_eta Catalytic domain of metazoan phosphoin | 95.29 | |
| cd08633 | 254 | PI-PLCc_eta2 Catalytic domain of metazoan phosphoi | 95.17 | |
| cd08631 | 258 | PI-PLCc_delta4 Catalytic domain of metazoan phosph | 94.96 | |
| cd08596 | 254 | PI-PLCc_epsilon Catalytic domain of metazoan phosp | 94.91 | |
| cd08558 | 226 | PI-PLCc_eukaryota Catalytic domain of eukaryotic p | 94.91 | |
| cd08632 | 253 | PI-PLCc_eta1 Catalytic domain of metazoan phosphoi | 94.9 | |
| cd08633 | 254 | PI-PLCc_eta2 Catalytic domain of metazoan phosphoi | 94.9 | |
| cd08595 | 257 | PI-PLCc_zeta Catalytic domain of metazoan phosphoi | 94.87 | |
| cd08630 | 258 | PI-PLCc_delta3 Catalytic domain of metazoan phosph | 94.78 | |
| cd08558 | 226 | PI-PLCc_eukaryota Catalytic domain of eukaryotic p | 94.78 | |
| cd08632 | 253 | PI-PLCc_eta1 Catalytic domain of metazoan phosphoi | 94.69 | |
| cd08599 | 228 | PI-PLCc_plant Catalytic domain of plant phosphatid | 94.68 | |
| cd08629 | 258 | PI-PLCc_delta1 Catalytic domain of metazoan phosph | 94.68 | |
| cd08628 | 254 | PI-PLCc_gamma2 Catalytic domain of metazoan phosph | 94.66 | |
| cd08595 | 257 | PI-PLCc_zeta Catalytic domain of metazoan phosphoi | 94.66 | |
| cd08596 | 254 | PI-PLCc_epsilon Catalytic domain of metazoan phosp | 94.62 | |
| cd08599 | 228 | PI-PLCc_plant Catalytic domain of plant phosphatid | 94.62 | |
| cd08631 | 258 | PI-PLCc_delta4 Catalytic domain of metazoan phosph | 94.55 | |
| cd08630 | 258 | PI-PLCc_delta3 Catalytic domain of metazoan phosph | 94.51 | |
| cd08593 | 257 | PI-PLCc_delta Catalytic domain of metazoan phospho | 94.5 | |
| cd08598 | 231 | PI-PLC1c_yeast Catalytic domain of putative yeast | 94.43 | |
| cd08629 | 258 | PI-PLCc_delta1 Catalytic domain of metazoan phosph | 94.34 | |
| cd08598 | 231 | PI-PLC1c_yeast Catalytic domain of putative yeast | 94.33 | |
| cd08626 | 257 | PI-PLCc_beta4 Catalytic domain of metazoan phospho | 94.31 | |
| cd08593 | 257 | PI-PLCc_delta Catalytic domain of metazoan phospho | 94.28 | |
| cd08628 | 254 | PI-PLCc_gamma2 Catalytic domain of metazoan phosph | 94.24 | |
| cd08623 | 258 | PI-PLCc_beta1 Catalytic domain of metazoan phospho | 94.03 | |
| cd08626 | 257 | PI-PLCc_beta4 Catalytic domain of metazoan phospho | 94.0 | |
| cd08624 | 261 | PI-PLCc_beta2 Catalytic domain of metazoan phospho | 93.94 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 93.77 | |
| cd08624 | 261 | PI-PLCc_beta2 Catalytic domain of metazoan phospho | 93.54 | |
| cd08623 | 258 | PI-PLCc_beta1 Catalytic domain of metazoan phospho | 93.54 | |
| cd08591 | 257 | PI-PLCc_beta Catalytic domain of metazoan phosphoi | 93.44 | |
| PF10223 | 244 | DUF2181: Uncharacterized conserved protein (DUF218 | 93.31 | |
| cd08591 | 257 | PI-PLCc_beta Catalytic domain of metazoan phosphoi | 93.22 | |
| cd08625 | 258 | PI-PLCc_beta3 Catalytic domain of metazoan phospho | 93.15 | |
| cd08625 | 258 | PI-PLCc_beta3 Catalytic domain of metazoan phospho | 92.53 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 92.31 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 90.51 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 88.64 | |
| cd08576 | 265 | GDPD_like_SMaseD_PLD Glycerophosphodiester phospho | 87.92 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 86.8 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 86.77 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 85.73 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 84.68 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 84.25 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 82.77 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 82.31 |
| >cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-67 Score=523.62 Aligned_cols=298 Identities=64% Similarity=1.113 Sum_probs=275.2
Q ss_pred cEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEEeeEEecCCeEEEecCCcCcccccccccccccccccccCCCCCCC
Q 010671 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (504)
Q Consensus 92 p~viaHRG~~~~~pEnT~~a~~~A~~~g~d~~~vE~DVqlTkDg~~Vv~HD~~l~rtT~~~~~~~~~~~~~~vdG~~~~g 171 (504)
|+||||||+||.+||||++||+.|++.|+++.+||||||+||||++||+||.+|+|+||++..|++|++++.|||++..|
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~t~~idG~~~~g 80 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKKTYSVNGVSTKG 80 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccccccccccccCC
Confidence 78999999999999999999999999999533899999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHHHhcCcccCCccCCCCCCCCCCcccCCHHHHHHHhCCCceEEeeccchhhhccchHHHHHHHHHHHhcCCc
Q 010671 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251 (504)
Q Consensus 172 ~~v~d~Tl~EL~~l~~~~~~~~r~~~~~g~~~~IpTLeEvL~~~k~~~l~iEIK~~~~~~~~~~~~~~~v~~~l~~~g~~ 251 (504)
|++.|+||+||++|++.+....|++.|+| .++||||+|+|++++..++++|||++.++.+.|+++++.|+++|++++++
T Consensus 81 ~~~~d~TlaELk~L~~~~~~~~r~~~~~g-~~~IpTLeEvl~~~~~~gi~i~ie~~~~~~~~gl~~~~~l~~~L~~~~~v 159 (299)
T cd08603 81 WFSVDFTLAELQQVTLIQGIFSRTPIFDG-QYPISTVEDVVTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVD 159 (299)
T ss_pred ceeccCCHHHHhhCCCCCCcccCCcccCC-cCCCCCHHHHHHHhHhcCeEEEEecHHHHHHcCCCHHHHHHHHHHHcCcE
Confidence 99999999999999998776678899998 66999999999999888999999999999999999999999999999999
Q ss_pred eEecCCHHHHHHHHHhcCCCCCcEEEEeccCCccCCCccccHHHHHhhHHHHHhhhcccccCCccccccCccccCCCCHH
Q 010671 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331 (504)
Q Consensus 252 ~isSfd~~~L~~l~~~~~~~~~~lv~~ll~~~~~~~~~~~~y~~l~~~l~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~ 331 (504)
+||||+...|+++++.....+.+++|.+++.+++.++++.+|++|+++|++|++||++|+|++.+++|.+.+.++..+++
T Consensus 160 ~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~~L~eIa~yAdgig~~k~~i~p~~~~~~~~~~t~ 239 (299)
T cd08603 160 YISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239 (299)
T ss_pred EEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHHhHHHHHHHHhhcCCChhheeecCCCCcccCccH
Confidence 99999999999999863222578998677777777778899999999999999999999999999999877777888899
Q ss_pred HHHHHHHcCCeEEEecCCCCCCccccCCCChHHHHHHHhhcCCCcccccccCCCCChHH
Q 010671 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (504)
Q Consensus 332 lV~~ahk~Gl~V~~wTv~n~~~~~~~y~~D~~~e~~~~i~~G~~gVDGIiTD~P~~~~~ 390 (504)
+|++||++||+||+|||+||....++|+.||..||..+++.|.+|||||+||||+++.+
T Consensus 240 lV~~Ah~agL~Vh~~tfr~e~~~~~~~~~d~~~e~~~~~~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred HHHHHHHcCCeEEEEEeeCCCCccccccCCHHHHHHHHHhcCCCCCCEEEecCchhhcc
Confidence 99999999999999999999668889999999999999988778899999999998764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
| >cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
| >cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
| >cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
| >cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
| >cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
| >cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
| >cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
| >cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
| >cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
| >cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
| >cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
| >cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
| >cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
| >cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins | Back alignment and domain information |
|---|
| >cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
| >cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 | Back alignment and domain information |
|---|
| >cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
| >COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme | Back alignment and domain information |
|---|
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
| >cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
| >cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins | Back alignment and domain information |
|---|
| >cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
| >cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
| >cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
| >cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
| >cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
| >cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
| >cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
| >cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
| >cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
| >cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
| >cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
| >KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
| >cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
| >cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
| >COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
| >cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
| >cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
| >cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins | Back alignment and domain information |
|---|
| >PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme | Back alignment and domain information |
|---|
| >cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 | Back alignment and domain information |
|---|
| >cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
| >cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins | Back alignment and domain information |
|---|
| >cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins | Back alignment and domain information |
|---|
| >cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma | Back alignment and domain information |
|---|
| >cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma | Back alignment and domain information |
|---|
| >PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A | Back alignment and domain information |
|---|
| >cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 | Back alignment and domain information |
|---|
| >cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 | Back alignment and domain information |
|---|
| >KOG2421 consensus Predicted starch-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2421 consensus Predicted starch-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein | Back alignment and domain information |
|---|
| >cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein | Back alignment and domain information |
|---|
| >smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X | Back alignment and domain information |
|---|
| >smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X | Back alignment and domain information |
|---|
| >cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta | Back alignment and domain information |
|---|
| >cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta | Back alignment and domain information |
|---|
| >cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 | Back alignment and domain information |
|---|
| >cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 | Back alignment and domain information |
|---|
| >cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon | Back alignment and domain information |
|---|
| >cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins | Back alignment and domain information |
|---|
| >cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 | Back alignment and domain information |
|---|
| >cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 | Back alignment and domain information |
|---|
| >cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta | Back alignment and domain information |
|---|
| >cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 | Back alignment and domain information |
|---|
| >cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins | Back alignment and domain information |
|---|
| >cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 | Back alignment and domain information |
|---|
| >cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
| >cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 | Back alignment and domain information |
|---|
| >cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 | Back alignment and domain information |
|---|
| >cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta | Back alignment and domain information |
|---|
| >cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon | Back alignment and domain information |
|---|
| >cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
| >cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 | Back alignment and domain information |
|---|
| >cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 | Back alignment and domain information |
|---|
| >cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta | Back alignment and domain information |
|---|
| >cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
| >cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 | Back alignment and domain information |
|---|
| >cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
| >cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 | Back alignment and domain information |
|---|
| >cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta | Back alignment and domain information |
|---|
| >cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 | Back alignment and domain information |
|---|
| >cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 | Back alignment and domain information |
|---|
| >cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 | Back alignment and domain information |
|---|
| >cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 | Back alignment and domain information |
|---|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 | Back alignment and domain information |
|---|
| >cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 | Back alignment and domain information |
|---|
| >cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta | Back alignment and domain information |
|---|
| >PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function | Back alignment and domain information |
|---|
| >cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta | Back alignment and domain information |
|---|
| >cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 | Back alignment and domain information |
|---|
| >cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 | Back alignment and domain information |
|---|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
| >cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins | Back alignment and domain information |
|---|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 9e-22
Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 52/364 (14%)
Query: 68 GVIAQVSAQGSNATSRWQTLTGDPPFVVA-RGGFSGIFPDSSSIAYSLTLITSAPSVILW 126
+ + S + V+A RG SG P+ + A ++ A L
Sbjct: 7 NLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGA-SGYLPEHTLPAKAMAYAQGAD--YLE 63
Query: 127 CDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDL---- 182
D+ +TKD+ + D LD +++A F + + +++ID+TL+++
Sbjct: 64 QDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRAR-------KDGRYYAIDFTLDEIKSLK 116
Query: 183 ------SNIILNQGVYSRTDKFDGNGFQILTVQDM--------ARQIKPPGLWLNIQHDA 228
Y + F++ T ++ K G++ I+
Sbjct: 117 FTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPW 176
Query: 229 FYAQHNLSMRSFVLSVSRSVVVN------YISSPEVNFLRSIAARFRPSMTKLVFRFLGK 282
F+ Q + + L V + Y+ + + L+ I P M +
Sbjct: 177 FHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLI 236
Query: 283 SEIEP-----------TTNQTYGSLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPH 329
+ + N Y + K + + +A GI + +
Sbjct: 237 AYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKL 296
Query: 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPS 389
T +V DA + +L V +D + + L + L + G V+G+ +DFP
Sbjct: 297 TGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL-YNKAG---VNGLFTDFPDKAV 352
Query: 390 AAVD 393
++
Sbjct: 353 KFLN 356
|
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Length = 313 | Back alignment and structure |
|---|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Length = 248 | Back alignment and structure |
|---|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 | Back alignment and structure |
|---|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 | Back alignment and structure |
|---|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278 | Back alignment and structure |
|---|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 272 | Back alignment and structure |
|---|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Length = 252 | Back alignment and structure |
|---|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Length = 247 | Back alignment and structure |
|---|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Length = 252 | Back alignment and structure |
|---|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Length = 224 | Back alignment and structure |
|---|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Length = 250 | Back alignment and structure |
|---|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Length = 234 | Back alignment and structure |
|---|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292 | Back alignment and structure |
|---|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Length = 238 | Back alignment and structure |
|---|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Length = 258 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| 1ydy_A | 356 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 100.0 | |
| 2pz0_A | 252 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 2oog_A | 287 | Glycerophosphoryl diester phosphodiesterase; phosp | 100.0 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 3l12_A | 313 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 3ks6_A | 250 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3ch0_A | 272 | Glycerophosphodiester phosphodiesterase; YP_677622 | 100.0 | |
| 2o55_A | 258 | Putative glycerophosphodiester phosphodiesterase; | 100.0 | |
| 3mz2_A | 292 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 1zcc_A | 248 | Glycerophosphodiester phosphodiesterase; NYSGXRC, | 100.0 | |
| 3no3_A | 238 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 1o1z_A | 234 | GDPD, glycerophosphodiester phosphodiesterase; TM1 | 100.0 | |
| 1vd6_A | 224 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 3i10_A | 278 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 1xx1_A | 285 | Smase I, sphingomyelinase I; structure, quick cryo | 99.97 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 99.88 | |
| 2pz0_A | 252 | Glycerophosphoryl diester phosphodiesterase; glyce | 99.88 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 99.87 | |
| 2oog_A | 287 | Glycerophosphoryl diester phosphodiesterase; phosp | 99.84 | |
| 1zcc_A | 248 | Glycerophosphodiester phosphodiesterase; NYSGXRC, | 99.84 | |
| 1ydy_A | 356 | Glycerophosphoryl diester phosphodiesterase; struc | 99.84 | |
| 3rlg_A | 302 | Sphingomyelin phosphodiesterase D lisictox-alphai; | 99.84 | |
| 2o55_A | 258 | Putative glycerophosphodiester phosphodiesterase; | 99.83 | |
| 3l12_A | 313 | Putative glycerophosphoryl diester phosphodiester; | 99.83 | |
| 1o1z_A | 234 | GDPD, glycerophosphodiester phosphodiesterase; TM1 | 99.83 | |
| 3i10_A | 278 | Putative glycerophosphoryl diester phosphodiester; | 99.83 | |
| 3ch0_A | 272 | Glycerophosphodiester phosphodiesterase; YP_677622 | 99.83 | |
| 3ks6_A | 250 | Glycerophosphoryl diester phosphodiesterase; struc | 99.82 | |
| 3mz2_A | 292 | Glycerophosphoryl diester phosphodiesterase; struc | 99.8 | |
| 1vd6_A | 224 | Glycerophosphoryl diester phosphodiesterase; glyce | 99.78 | |
| 3no3_A | 238 | Glycerophosphodiester phosphodiesterase; structura | 99.77 | |
| 1xx1_A | 285 | Smase I, sphingomyelinase I; structure, quick cryo | 99.56 | |
| 3rlg_A | 302 | Sphingomyelin phosphodiesterase D lisictox-alphai; | 98.46 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 92.38 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 91.54 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 91.47 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 90.92 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 90.44 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 89.7 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 87.25 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 84.9 |
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-49 Score=407.14 Aligned_cols=287 Identities=21% Similarity=0.333 Sum_probs=215.8
Q ss_pred CCCcEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEEeeEEecCCeEEEecCCcCcccccccccccccccccccCCCC
Q 010671 89 GDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (504)
Q Consensus 89 ~~~p~viaHRG~~~~~pEnT~~a~~~A~~~g~d~~~vE~DVqlTkDg~~Vv~HD~~l~rtT~~~~~~~~~~~~~~vdG~~ 168 (504)
+.+|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++...||+++++ +|.
T Consensus 28 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~f~~~~~~---~g~- 101 (356)
T 1ydy_A 28 SNEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK---DGR- 101 (356)
T ss_dssp -CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTCCCT---TSC-
T ss_pred CCCceEEEeCCCCCCCCcchHHHHHHHHHcCCC--EEEeeeEECCCCcEEEeCCChHHhhcCccccccccccc---CCC-
Confidence 567999999999999999999999999999999 99999999999999999999999999998888887653 443
Q ss_pred CCCcccccCCHHHHhcCcccCCccC--------CCCCCC---CCCcccCCHHHHHHHhC--------CCceEEeeccchh
Q 010671 169 TPGWFSIDYTLNDLSNIILNQGVYS--------RTDKFD---GNGFQILTVQDMARQIK--------PPGLWLNIQHDAF 229 (504)
Q Consensus 169 ~~g~~v~d~Tl~EL~~l~~~~~~~~--------r~~~~~---g~~~~IpTLeEvL~~~k--------~~~l~iEIK~~~~ 229 (504)
++|.|+||+||++|+++.|+.. ++..|. + .++||||+|+|++++ +.+++||||.+..
T Consensus 102 ---~~v~d~T~~eL~~l~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~ 177 (356)
T 1ydy_A 102 ---YYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKS-DFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWF 177 (356)
T ss_dssp ---CBGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCS-CCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHH
T ss_pred ---cchhhCcHHHHHhCCCCccccccccccccccccccccccC-CCcCCCHHHHHHHHHHhhhcccCCceEEEeecCccc
Confidence 5899999999999999986521 122332 2 479999999999985 4779999998765
Q ss_pred hhccchHHHHHHHHHHHhcCC------ceEecCCHHHHHHHHHhc----CCCCCcEEEEeccCCccC---------CCcc
Q 010671 230 YAQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAARF----RPSMTKLVFRFLGKSEIE---------PTTN 290 (504)
Q Consensus 230 ~~~~~~~~~~~v~~~l~~~g~------~~isSfd~~~L~~l~~~~----~~~~~~lv~~ll~~~~~~---------~~~~ 290 (504)
....+..+++.++++++++++ ++|+||++..|+++++.. .| ..++++.+ ...... +..+
T Consensus 178 ~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~l~~~~~~~~p~~~p-~~~~~~L~-~~~~~~~~~~~~~~~~~~~ 255 (356)
T 1ydy_A 178 HHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGM-ELNLVQLI-AYTDWNETQQKQPDGSWVN 255 (356)
T ss_dssp HHHTTCCHHHHHHHHHHHTTCCSTTSSBEEEESCHHHHHHHHHTHHHHHTC-CCEEEEEE-CCGGGCCCEEECTTSCEEE
T ss_pred ccccchhHHHHHHHHHHHcCCCCCCCCEEEEcCCHHHHHHHHhhcccccCC-CceEEEEe-ccCcccccccccccccccc
Confidence 443344688999999999875 489999999999999972 23 67888633 221110 0111
Q ss_pred ccHHHHH--hhHHHHHhhhcccccCCccccccCccccCCCCHHHHHHHHHcCCeEEEecCCCCCCccccCCCChHHHHHH
Q 010671 291 QTYGSLL--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS 368 (504)
Q Consensus 291 ~~y~~l~--~~l~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~lV~~ahk~Gl~V~~wTv~n~~~~~~~y~~D~~~e~~~ 368 (504)
..|.++. ..+..+..++.+++|.+..+.+...+......+++|+.+|++|++|++||||++. .. .|..|+.+.+++
T Consensus 256 ~~~~~~~~~~~l~~~~~~a~~i~p~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~-l~-~~~~d~~~~~~~ 333 (356)
T 1ydy_A 256 YNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDK-LP-EYTPDVNQLYDA 333 (356)
T ss_dssp CCCGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTS-CC-TTCSSHHHHHHH
T ss_pred cchhhhcchhhHHHHHhhCeEEccCHHHhccccccccccCCHHHHHHHHHCCCEEEEEEECccc-cc-ccccCHHHHHHH
Confidence 2344332 2466777788899988766543211101122467999999999999999999872 11 233355554465
Q ss_pred -HhhcCCCcccccccCCCCChHHHH
Q 010671 369 -FIDNGDFSVDGVLSDFPLTPSAAV 392 (504)
Q Consensus 369 -~i~~G~~gVDGIiTD~P~~~~~~l 392 (504)
++++| |||||||+|+++.+++
T Consensus 334 ~l~~~G---VDgIiTD~P~~~~~~l 355 (356)
T 1ydy_A 334 LYNKAG---VNGLFTDFPDKAVKFL 355 (356)
T ss_dssp HHTTSC---CSEEEESCHHHHHHHH
T ss_pred HHHHcC---CCEEEeCCHHHHHHhh
Confidence 55655 9999999999988775
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A | Back alignment and structure |
|---|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* | Back alignment and structure |
|---|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} | Back alignment and structure |
|---|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 | Back alignment and structure |
|---|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0 | Back alignment and structure |
|---|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 | Back alignment and structure |
|---|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A | Back alignment and structure |
|---|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A* | Back alignment and structure |
|---|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A | Back alignment and structure |
|---|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 | Back alignment and structure |
|---|
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A | Back alignment and structure |
|---|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* | Back alignment and structure |
|---|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} | Back alignment and structure |
|---|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 | Back alignment and structure |
|---|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* | Back alignment and structure |
|---|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A | Back alignment and structure |
|---|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0 | Back alignment and structure |
|---|
| >1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A* | Back alignment and structure |
|---|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* | Back alignment and structure |
|---|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 504 | ||||
| d1ydya1 | 328 | c.1.18.3 (A:29-356) Glycerophosphodiester phosphod | 7e-23 | |
| d1ydya1 | 328 | c.1.18.3 (A:29-356) Glycerophosphodiester phosphod | 8e-13 | |
| d1zcca1 | 240 | c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi | 6e-11 | |
| d1zcca1 | 240 | c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi | 0.003 | |
| d1o1za_ | 226 | c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot | 5e-10 | |
| d1o1za_ | 226 | c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot | 0.004 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 2e-09 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 0.002 |
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Score = 97.1 bits (240), Expect = 7e-23
Identities = 59/326 (18%), Positives = 109/326 (33%), Gaps = 36/326 (11%)
Query: 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS 149
+ V+A G SG P+ + A ++ A L D+ +TKD+ + D LD +
Sbjct: 1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVT 58
Query: 150 NIAQIFKTQQK---NYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQIL 206
++A F + + Y S+ +T Y + F++
Sbjct: 59 DVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVH 118
Query: 207 TVQDMARQI--------KPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN------Y 252
T ++ + K G++ I+ F+ Q + + L V + Y
Sbjct: 119 TFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVY 178
Query: 253 ISSPEVNFLRSIAARFRP---SMTKLVFRFLGKSEIEPTTNQTYGSLL----------KN 299
+ + + L+ I P LV E Q GS +
Sbjct: 179 LQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGA 238
Query: 300 LTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYS 359
+ + +A GI + + T +V DA + +L V +D Y+
Sbjct: 239 MKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKL--PEYT 296
Query: 360 YDPLTEYLSFIDNGDFSVDGVLSDFP 385
D Y + + V+G+ +DFP
Sbjct: 297 PDVNQLYDALYN--KAGVNGLFTDFP 320
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| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 | Back information, alignment and structure |
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| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 | Back information, alignment and structure |
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| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 | Back information, alignment and structure |
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| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226 | Back information, alignment and structure |
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| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226 | Back information, alignment and structure |
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| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
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| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| d1ydya1 | 328 | Glycerophosphodiester phosphodiesterase GlpQ {Esch | 100.0 | |
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 100.0 | |
| d1o1za_ | 226 | Hypothetical protein TM1621 {Thermotoga maritima [ | 100.0 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 100.0 | |
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 99.84 | |
| d1ydya1 | 328 | Glycerophosphodiester phosphodiesterase GlpQ {Esch | 99.84 | |
| d1o1za_ | 226 | Hypothetical protein TM1621 {Thermotoga maritima [ | 99.82 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 99.8 | |
| d1qasa3 | 327 | Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n | 94.74 | |
| d1qasa3 | 327 | Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n | 93.57 | |
| d2zkmx4 | 349 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 92.09 | |
| d2zkmx4 | 349 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 91.59 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 82.56 |
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-47 Score=384.61 Aligned_cols=288 Identities=21% Similarity=0.318 Sum_probs=217.3
Q ss_pred CCcEEEEeCCCCCCCCchHHHHHHHHHHcCCCCcEEEEeeEEecCCeEEEecCCcCcccccccccccccccccccCCCCC
Q 010671 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (504)
Q Consensus 90 ~~p~viaHRG~~~~~pEnT~~a~~~A~~~g~d~~~vE~DVqlTkDg~~Vv~HD~~l~rtT~~~~~~~~~~~~~~vdG~~~ 169 (504)
+.|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++...++..... +|+
T Consensus 1 ~~~liIaHRG~~~~~PENTl~af~~A~~~gad--~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~---~~~-- 73 (328)
T d1ydya1 1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK---DGR-- 73 (328)
T ss_dssp CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTCCCT---TSC--
T ss_pred CCCEEEeCCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeEccCCcEEEECCchhhcccCCCCCccccccc---CCC--
Confidence 47999999999999999999999999999999 99999999999999999999999999987755443322 222
Q ss_pred CCcccccCCHHHHhcCcccCCcc-----------CCCCCCCCCCcccCCHHHHHHHhC--------CCceEEeeccchhh
Q 010671 170 PGWFSIDYTLNDLSNIILNQGVY-----------SRTDKFDGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFY 230 (504)
Q Consensus 170 ~g~~v~d~Tl~EL~~l~~~~~~~-----------~r~~~~~g~~~~IpTLeEvL~~~k--------~~~l~iEIK~~~~~ 230 (504)
+.+.++||+||++++++.+.. .+.+.+.+ .++||||+|+++.++ +..+++|||.+...
T Consensus 74 --~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~~~~~~~~~~~~~~~~~~~~~iEiK~~~~~ 150 (328)
T d1ydya1 74 --YYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKS-DFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFH 150 (328)
T ss_dssp --CBGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCS-CCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHH
T ss_pred --ceeeecchhhhhccccccccccccccccccccccccccCC-CcccCcHHHHHHHHHHHhhhcCCCceeeeccCCcchh
Confidence 479999999999999887642 12233344 579999999999884 47799999998887
Q ss_pred hccchHHHHHHHHHHHhcCC------ceEecCCHHHHHHHHHhcCC---CCCcEEEEeccCCccC---------CCcccc
Q 010671 231 AQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAARFRP---SMTKLVFRFLGKSEIE---------PTTNQT 292 (504)
Q Consensus 231 ~~~~~~~~~~v~~~l~~~g~------~~isSfd~~~L~~l~~~~~~---~~~~lv~~ll~~~~~~---------~~~~~~ 292 (504)
.+.+..+++.+..++++++. ++++||++..|+.+++...| ...+++..+ ...... ...+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~SF~~~~l~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 229 (328)
T d1ydya1 151 HQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLI-AYTDWNETQQKQPDGSWVNYN 229 (328)
T ss_dssp HHTTCCHHHHHHHHHHHTTCCSTTSSBEEEESCHHHHHHHHHTHHHHHTCCCEEEEEE-CCGGGCCCEEECTTSCEEECC
T ss_pred hhcchhhHHHHHHHHHHhcccCCCceEEEEecCHHHHHHHHHHcCcccccccceeeee-cccccchhccccccccccccc
Confidence 77777888888888887653 48999999999999864311 123444322 111110 111233
Q ss_pred HHHHHh--hHHHHHhhhcccccCCccccccCccccCCCCHHHHHHHHHcCCeEEEecCCCCCCccccCCCChHHHHHHHh
Q 010671 293 YGSLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI 370 (504)
Q Consensus 293 y~~l~~--~l~~i~~~a~gi~~~~~~i~~~~~~~~l~~~~~lV~~ahk~Gl~V~~wTv~n~~~~~~~y~~D~~~e~~~~i 370 (504)
|..+.. .+..+..++.++++.+.++.+..........+.+|+.||++|++|++||||++.. +.+..|...++..++
T Consensus 230 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~gl~v~~wTvn~~~~--~~~~~d~~~~~~~~~ 307 (328)
T d1ydya1 230 YDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKL--PEYTPDVNQLYDALY 307 (328)
T ss_dssp CGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTSC--CTTCSSHHHHHHHHH
T ss_pred hhhhcChhhHHHHHhhCCeeecchhhcccccccccccCCHHHHHHHHHCCCEEEEEccCChHH--hhhccCHHHHHHHHH
Confidence 444333 5777888899999888887765444444556789999999999999999998732 344456666665544
Q ss_pred hcCCCcccccccCCCCChHHHH
Q 010671 371 DNGDFSVDGVLSDFPLTPSAAV 392 (504)
Q Consensus 371 ~~G~~gVDGIiTD~P~~~~~~l 392 (504)
. ++||||||||+|+++.+++
T Consensus 308 ~--~~GVDgIiTD~P~~~~~~l 327 (328)
T d1ydya1 308 N--KAGVNGLFTDFPDKAVKFL 327 (328)
T ss_dssp T--TSCCSEEEESCHHHHHHHH
T ss_pred H--HcCCcEEEEcCHHHHHHHh
Confidence 3 3459999999999999887
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
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