Citrus Sinensis ID: 010682

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
MLKQILSKLPRKSPKSDQLDEINSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAASFQPSADYIIAPVKPATCSVAC
cHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
cHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEcEccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccEEEcc
MLKQIlsklprkspksdqldeinsgsnnsnfsngsqctnggnglsSRLSVVKRVssavfpssimagveavephlsfkdvsntqkQNLFVSKLnlccevsdfsdsdkvtaEQDLKRQTLIELADfvssgsakftepaiSGMCKmcslnlfrvfppkcrsngtggetedeepmfdpawSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLdlfdsedprerDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIisgfalplkeEHKIFLCRaliplhkpksvgiyhqQLTYCVVQFIDKDPKLATNAIKGLLkywpvtnsqKELMFISELEEVLEMTSMAEFQKIMVPLFRRigcclnsshYQVAERAHLLWNNEHILNLVTHnrqviiplvfpalerntqNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLEsaasfqpsadyiiapvkpatcsvac
mlkqilsklprkspksdqldeinsgsnnsnfsngsqCTNGGNGLSSRLSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIEladfvssgsakFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRlldlfdsedprerDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRkleeenstlsvaaERRKLTWERLESaasfqpsadyiiapVKPATCSVAC
MLKQILSKLPRKSPKSDQLDEInsgsnnsnfsngsQCTNGGNGlssrlsvvkrvssavFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAASFQPSADYIIAPVKPATCSVAC
**************************************************VKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFS**********LKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKC***************FDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKR*****************LTWERL********SADYIIAPV*********
MLKQI****************************************************************************TQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQA**********************WE****************************
MLKQILSK************EINSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSN**********PMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAASFQPSADYIIAPVKPATCSVAC
******************************************************************VEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPK******GGETE*EEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAASFQPSADYIIAPVKPAT*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLKQILSKLPRKSPKSDQLDEINSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAASFQPSADYIIAPVKPATCSVAC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query504 2.2.26 [Sep-21-2011]
Q93YV6500 Serine/threonine protein yes no 0.992 1.0 0.634 0.0
Q9LVE2546 Serine/threonine protein no no 0.950 0.877 0.535 1e-153
Q8RW96522 Serine/threonine protein no no 0.986 0.952 0.520 1e-153
Q8LF36492 Serine/threonine protein no no 0.892 0.914 0.569 1e-153
Q9LU89510 Serine/threonine protein no no 0.950 0.939 0.541 1e-153
O04376499 Serine/threonine protein no no 0.954 0.963 0.532 1e-144
O04375495 Serine/threonine protein no no 0.962 0.979 0.496 1e-142
Q9ZQY6477 Serine/threonine protein no no 0.928 0.981 0.510 1e-134
Q9SV41497 Serine/threonine protein no no 0.809 0.820 0.531 1e-129
Q28653586 Serine/threonine-protein yes no 0.833 0.716 0.463 1e-117
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function desciption
 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/504 (63%), Positives = 394/504 (78%), Gaps = 4/504 (0%)

Query: 1   MLKQILSKLPRKSPKSDQLDEINSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAVFP 60
           M KQ LSKLPRKS KSD  +   S S   +       T+GG     R +  KR+SSAVFP
Sbjct: 1   MFKQFLSKLPRKSSKSDSGELNRSSSGPVSSPVQRSGTSGGGSGPVRSNSGKRMSSAVFP 60

Query: 61  SSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIE 120
           +S++AG+E + P   FKDV +++K NLFVSK++LCC   DFSD  K + E+D+KRQTL+E
Sbjct: 61  ASVVAGIEPLVP---FKDVPSSEKLNLFVSKVSLCCVTFDFSDPGKNSIEKDVKRQTLLE 117

Query: 121 LADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQ 180
           L DFV+SGS KFTEPAI  MC+MC++NLFRVFPP  RS+ +GGE +D+EPMFDPAW HLQ
Sbjct: 118 LLDFVASGSVKFTEPAILAMCRMCAVNLFRVFPPNYRSS-SGGENDDDEPMFDPAWPHLQ 176

Query: 181 IVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA 240
           IVYDLLL+F++   LD KVAKKY+DH FIVRLLDLFDSEDPRER+CLKT+LHR+YGKFM 
Sbjct: 177 IVYDLLLKFITSPCLDAKVAKKYLDHAFIVRLLDLFDSEDPRERECLKTILHRVYGKFMV 236

Query: 241 HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLH 300
           HR F+R+++ NI YRFVFETE+H+GIAELLEIFGSI+SGFALPLKEEHKIFL R LIPLH
Sbjct: 237 HRPFVRKSMSNIFYRFVFETEKHSGIAELLEIFGSIVSGFALPLKEEHKIFLWRVLIPLH 296

Query: 301 KPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMT 360
           KPKSVG Y QQL+YC+ QFIDK+PKL +  IKGLLK+WP+TNSQKE+MF+ E+EE++E  
Sbjct: 297 KPKSVGNYFQQLSYCITQFIDKEPKLGSVVIKGLLKFWPITNSQKEVMFLGEVEEIVEAM 356

Query: 361 SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALE 420
           S+ EFQKIMVPLF RI CC+ SSH+QV+ERA  LWNN+ I+NL+ HNRQ I+P++F ALE
Sbjct: 357 SVMEFQKIMVPLFLRIACCVTSSHFQVSERALFLWNNDQIVNLIGHNRQAILPIMFTALE 416

Query: 421 RNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLES 480
           +N QNHWNQ+VLNLT NVRK+ CEMDE L  +C  + +E+ +    AAE+RK  W RLE+
Sbjct: 417 KNAQNHWNQSVLNLTLNVRKMFCEMDEALFMSCHARFKEDEAKQCSAAEKRKEVWARLEN 476

Query: 481 AASFQPSADYIIAPVKPATCSVAC 504
           AAS +P        V P   S+AC
Sbjct: 477 AASMKPITGKTAVLVTPRATSIAC 500
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function description
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function description
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function description
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
255549014543 protein phosphatase 2a, regulatory subun 0.994 0.922 0.814 0.0
297738882534 unnamed protein product [Vitis vinifera] 0.986 0.930 0.784 0.0
359484379540 PREDICTED: serine/threonine protein phos 0.986 0.920 0.784 0.0
356511615515 PREDICTED: serine/threonine protein phos 1.0 0.978 0.757 0.0
356563081514 PREDICTED: serine/threonine protein phos 1.0 0.980 0.756 0.0
224143455497 predicted protein [Populus trichocarpa] 0.986 1.0 0.781 0.0
357477821510 Serine/threonine protein phosphatase 2A 0.996 0.984 0.761 0.0
388499342510 unknown [Medicago truncatula] 0.996 0.984 0.757 0.0
449443131500 PREDICTED: serine/threonine protein phos 0.986 0.994 0.744 0.0
449509474500 PREDICTED: serine/threonine protein phos 0.986 0.994 0.740 0.0
>gi|255549014|ref|XP_002515563.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223545507|gb|EEF47012.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/506 (81%), Positives = 450/506 (88%), Gaps = 5/506 (0%)

Query: 1   MLKQILSKLPRKSPKSDQLDE--INSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAV 58
           MLKQILSK+PRKS KS+  D   I SG+N+SN+ NG  CTNGGN  SSRL+VVKRVSSAV
Sbjct: 41  MLKQILSKIPRKSSKSESFDSAGIESGNNSSNWGNGVPCTNGGNSFSSRLNVVKRVSSAV 100

Query: 59  FPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTL 118
           FP+SIMAGVEAVEPHLSFKDVSN QKQ+LF+SKLN CCE SDFSD DK  A+QDLK QTL
Sbjct: 101 FPASIMAGVEAVEPHLSFKDVSNVQKQSLFISKLNFCCE-SDFSDPDKNAAQQDLKGQTL 159

Query: 119 IELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSH 178
           IEL DFVSSG AKF EPA++ MCK+C++NLFRVFPPK RS  T GETEDEEPMFDP WSH
Sbjct: 160 IELVDFVSSGGAKFNEPAMAAMCKLCAINLFRVFPPKYRSANTAGETEDEEPMFDPDWSH 219

Query: 179 LQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKF 238
           LQ VYDLLLRF+S  + D K AKKYVDH FI+RLLDLFDSEDPRERDCLKT+LHRIYGKF
Sbjct: 220 LQCVYDLLLRFIS--AADPKAAKKYVDHAFIMRLLDLFDSEDPRERDCLKTILHRIYGKF 277

Query: 239 MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIP 298
           M HR +IR+AV NIIY F+FETERHNGIAELLEIFGS+ISGFALPLKEEHK+FL RALIP
Sbjct: 278 MVHRPYIRKAVSNIIYNFIFETERHNGIAELLEIFGSVISGFALPLKEEHKMFLWRALIP 337

Query: 299 LHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLE 358
           LHKPKSVGIYHQQLTYCVVQFIDKDPKLA+  IKGLLKYWPVTNSQKELMFISELEE+LE
Sbjct: 338 LHKPKSVGIYHQQLTYCVVQFIDKDPKLASTVIKGLLKYWPVTNSQKELMFISELEEILE 397

Query: 359 MTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPA 418
           MTSM EFQKIM+PLFRRIGCCLNSSHYQVAERAHLLWNNE ILNLV HNRQVI+PLVF A
Sbjct: 398 MTSMDEFQKIMIPLFRRIGCCLNSSHYQVAERAHLLWNNERILNLVAHNRQVIVPLVFSA 457

Query: 419 LERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERL 478
           LERNTQNHWNQAVLNLTQN+RK+ CEMDEELV AC+RKLEEE+S LSV AE+R+L WERL
Sbjct: 458 LERNTQNHWNQAVLNLTQNIRKMFCEMDEELVVACQRKLEEEDSMLSVKAEKRRLIWERL 517

Query: 479 ESAASFQPSADYIIAPVKPATCSVAC 504
           ESAAS QP+A  ++A VKP TCSV+C
Sbjct: 518 ESAASLQPAAANLLASVKPTTCSVSC 543

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738882|emb|CBI28127.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484379|ref|XP_002284853.2| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511615|ref|XP_003524519.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|356563081|ref|XP_003549794.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like isoform 1 [Glycine max] gi|356563083|ref|XP_003549795.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224143455|ref|XP_002324961.1| predicted protein [Populus trichocarpa] gi|222866395|gb|EEF03526.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357477821|ref|XP_003609196.1| Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Medicago truncatula] gi|355510251|gb|AES91393.1| Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Medicago truncatula] Back     alignment and taxonomy information
>gi|388499342|gb|AFK37737.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449443131|ref|XP_004139334.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449509474|ref|XP_004163599.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
TAIR|locus:2179499500 AT5G25510 [Arabidopsis thalian 0.992 1.0 0.617 2.4e-170
TAIR|locus:2089905546 AT3G21650 [Arabidopsis thalian 0.831 0.767 0.601 4.4e-141
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.942 0.965 0.552 8.9e-141
TAIR|locus:505006470522 ATB' GAMMA [Arabidopsis thalia 0.980 0.946 0.525 8.3e-138
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.821 0.829 0.586 6.7e-136
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.839 0.854 0.550 1.9e-131
TAIR|locus:2092175529 AT3G26020 [Arabidopsis thalian 0.426 0.406 0.626 4.2e-127
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.807 0.853 0.553 1e-124
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.807 0.818 0.542 1.5e-122
FB|FBgn0042693984 PP2A-B' "PP2A-B'" [Drosophila 0.817 0.418 0.490 4.5e-114
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1656 (588.0 bits), Expect = 2.4e-170, P = 2.4e-170
 Identities = 311/504 (61%), Positives = 382/504 (75%)

Query:     1 MLKQILSKLPRKSPKSDQLDEIXXXXXXXXXXXXXQCTNGGNGXXXXXXXXXXXXXXXFP 60
             M KQ LSKLPRKS KSD  +                 T+GG                 FP
Sbjct:     1 MFKQFLSKLPRKSSKSDSGELNRSSSGPVSSPVQRSGTSGGGSGPVRSNSGKRMSSAVFP 60

Query:    61 SSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIE 120
             +S++AG+E + P   FKDV +++K NLFVSK++LCC   DFSD  K + E+D+KRQTL+E
Sbjct:    61 ASVVAGIEPLVP---FKDVPSSEKLNLFVSKVSLCCVTFDFSDPGKNSIEKDVKRQTLLE 117

Query:   121 LADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQ 180
             L DFV+SGS KFTEPAI  MC+MC++NLFRVFPP  RS+ +GGE +D+EPMFDPAW HLQ
Sbjct:   118 LLDFVASGSVKFTEPAILAMCRMCAVNLFRVFPPNYRSS-SGGENDDDEPMFDPAWPHLQ 176

Query:   181 IVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA 240
             IVYDLLL+F++   LD KVAKKY+DH FIVRLLDLFDSEDPRER+CLKT+LHR+YGKFM 
Sbjct:   177 IVYDLLLKFITSPCLDAKVAKKYLDHAFIVRLLDLFDSEDPRERECLKTILHRVYGKFMV 236

Query:   241 HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLH 300
             HR F+R+++ NI YRFVFETE+H+GIAELLEIFGSI+SGFALPLKEEHKIFL R LIPLH
Sbjct:   237 HRPFVRKSMSNIFYRFVFETEKHSGIAELLEIFGSIVSGFALPLKEEHKIFLWRVLIPLH 296

Query:   301 KPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMT 360
             KPKSVG Y QQL+YC+ QFIDK+PKL +  IKGLLK+WP+TNSQKE+MF+ E+EE++E  
Sbjct:   297 KPKSVGNYFQQLSYCITQFIDKEPKLGSVVIKGLLKFWPITNSQKEVMFLGEVEEIVEAM 356

Query:   361 SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALE 420
             S+ EFQKIMVPLF RI CC+ SSH+QV+ERA  LWNN+ I+NL+ HNRQ I+P++F ALE
Sbjct:   357 SVMEFQKIMVPLFLRIACCVTSSHFQVSERALFLWNNDQIVNLIGHNRQAILPIMFTALE 416

Query:   421 RNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLES 480
             +N QNHWNQ+VLNLT NVRK+ CEMDE L  +C  + +E+ +    AAE+RK  W RLE+
Sbjct:   417 KNAQNHWNQSVLNLTLNVRKMFCEMDEALFMSCHARFKEDEAKQCSAAEKRKEVWARLEN 476

Query:   481 AASFQPSADYIIAPVKPATCSVAC 504
             AAS +P        V P   S+AC
Sbjct:   477 AASMKPITGKTAVLVTPRATSIAC 500
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092175 AT3G26020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93YV62A5I_ARATHNo assigned EC number0.63490.99201.0yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 0.0
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 2e-57
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 1e-11
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  520 bits (1342), Expect = 0.0
 Identities = 217/410 (52%), Positives = 292/410 (71%), Gaps = 7/410 (1%)

Query: 76  FKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSS--GSAKFT 133
             DV + + ++LF+ KL  CC + DFSD +     +++KRQTL E+ D+VS+     K T
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 134 EPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYG 193
           E     + KM ++N+FR  PP    +    + +D+EP  +P+W HL +VY++LLRF+   
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPPIPNPSL---DPDDDEPFLEPSWPHLSLVYEILLRFIE-- 115

Query: 194 SLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNII 253
           S      KKY+DH FI RLLDLFDS DPRERD LKT LHRIYGKF   R FIR+A+ +I+
Sbjct: 116 SPPFDPLKKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINSIL 175

Query: 254 YRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLT 313
           YRF++ETE+ NG+AELLEI GSII+GFALPLKEEHK FL + L+PLHK K + +YHQQL+
Sbjct: 176 YRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQLS 235

Query: 314 YCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLF 373
           YCVVQFI+KDP LA   I+GLLK+WPVTNS KE++F+ ELEE+LE     EFQKIMVPLF
Sbjct: 236 YCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVPLF 295

Query: 374 RRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLN 433
           + +  C++S H+QVAERA  LWNNE+ +NL++ N ++I+P++FPAL RN +NHWNQ+V N
Sbjct: 296 KILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSVRN 355

Query: 434 LTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAAS 483
           L  NV K+L E+D +L   C  K +E+ +      ++RK TW R+  AA+
Sbjct: 356 LALNVLKLLMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEAAA 405

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 504
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 97.72
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.52
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 86.08
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 81.4
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 80.19
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-154  Score=1175.32  Aligned_cols=415  Identities=56%  Similarity=0.978  Sum_probs=410.9

Q ss_pred             cCCCCCCCCCChHHhHHHHHHHHhcCcccccccCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhcc
Q 010682           70 VEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLF  149 (504)
Q Consensus        70 ~~~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIF  149 (504)
                      +++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++++.+|+++++|+++|||
T Consensus        42 l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~nif  121 (457)
T KOG2085|consen   42 LEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVNIF  121 (457)
T ss_pred             ceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence            55999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHH
Q 010682          150 RVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKT  229 (504)
Q Consensus       150 R~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~Lkt  229 (504)
                      |+|||..++++  +|+|||||++|++|||||+||++|+||++||++|+++||+||||+||++||++||||||||||+|||
T Consensus       122 R~lpp~~n~~~--~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT  199 (457)
T KOG2085|consen  122 RTLPPSVNPTG--FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKT  199 (457)
T ss_pred             ccCCcccCCCc--CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHH
Confidence            99999999976  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccch
Q 010682          230 VLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYH  309 (504)
Q Consensus       230 iLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~  309 (504)
                      +||||||||+++|+|||++|||+||+|||||++|||||||||||||||||||+|||||||+||.|||||||++++++.||
T Consensus       200 ~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh  279 (457)
T KOG2085|consen  200 ILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYH  279 (457)
T ss_pred             HHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q 010682          310 QQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAE  389 (504)
Q Consensus       310 ~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAE  389 (504)
                      +||+|||+||++|||+|++.||+||+||||+|||+||||||+||||||+.++|.+|++|++|||+|||+|++|+||||||
T Consensus       280 ~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAE  359 (457)
T KOG2085|consen  280 KQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAE  359 (457)
T ss_pred             cccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHH
Q 010682          390 RAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAE  469 (504)
Q Consensus       390 rAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~  469 (504)
                      |||++|||+||+++|++|+++|+|||||+||+++++|||++|+++++||+|++||||++||++|+++|++++.++++.++
T Consensus       360 raL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~~~~~~  439 (457)
T KOG2085|consen  360 RALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKEKETEE  439 (457)
T ss_pred             HHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 010682          470 RRKLTWERLESAASFQP  486 (504)
Q Consensus       470 ~r~~~W~~l~~~A~~~~  486 (504)
                      +|++.|++||++|+.++
T Consensus       440 ~re~~W~~le~~~~~~~  456 (457)
T KOG2085|consen  440 KREETWKRLEELAAENP  456 (457)
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence            99999999999998753

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 1e-116
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-115
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 1e-114
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 1e-109
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 1e-107
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/416 (46%), Positives = 277/416 (66%), Gaps = 1/416 (0%)
Query: 74  LSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKF 132
           L  +DV    ++ LF+ KL  CC + DF SD       +++KR  L E+ ++++      
Sbjct: 28  LHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVI 87
Query: 133 TEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSY 192
           TEP    +  M ++N+FR  PP     G   + E++EP  + AW HLQ+VY+  LRF+  
Sbjct: 88  TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 147
Query: 193 GSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNI 252
                 +AKKY+D  F+++LL+LFDSEDPRERD LKT LHRIYGKF+  R +IR+ + NI
Sbjct: 148 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207
Query: 253 IYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQL 312
            YRF++ETE HNGIAELLEI GSII+GFALPLKEEHKIFL + L+PLHK KS+ +YH QL
Sbjct: 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 267
Query: 313 TYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPL 372
            YCVVQF++KD  L    +  LLKYWP T+S KE+MF++ELEE+L++   +EF KIM PL
Sbjct: 268 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 327
Query: 373 FRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVL 432
           FR++  C++S H+QVAERA   WNNE+I++L++ N   I+P++FP+L RN++ HWN+ + 
Sbjct: 328 FRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIH 387
Query: 433 NLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAASFQPSA 488
            L  N  K+  EM+++L   C ++ + E     +  + R+  W ++E+ A   P  
Sbjct: 388 GLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQV 443
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 1e-178
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-166
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-155
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  506 bits (1304), Expect = e-178
 Identities = 199/443 (44%), Positives = 285/443 (64%), Gaps = 1/443 (0%)

Query: 48  LSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDK 106
           L+  K  S  V  ++   G       L  +DV    ++ LF+ KL  CC + DF SD   
Sbjct: 2   LTCNKAGSRMVVDAANSNGPFQPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLS 61

Query: 107 VTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETE 166
               +++KR  L E+ ++++      TEP    +  M ++N+FR  PP     G   + E
Sbjct: 62  DLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPE 121

Query: 167 DEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDC 226
           ++EP  + AW HLQ+VY+  LRF+        +AKKY+D  F+++LL+LFDSEDPRERD 
Sbjct: 122 EDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181

Query: 227 LKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 286
           LKT LHRIYGKF+  R +IR+ + NI YRF++ETE HNGIAELLEI GSII+GFALPLKE
Sbjct: 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241

Query: 287 EHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKE 346
           EHKIFL + L+PLHK KS+ +YH QL YCVVQF++KD  L    +  LLKYWP T+S KE
Sbjct: 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE 301

Query: 347 LMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTH 406
           +MF++ELEE+L++   +EF KIM PLFR++  C++S H+QVAERA   WNNE+I++L++ 
Sbjct: 302 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 361

Query: 407 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSV 466
           N   I+P++FP+L RN++ HWN+ +  L  N  K+  EM+++L   C ++ + E     +
Sbjct: 362 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL 421

Query: 467 AAERRKLTWERLESAASFQPSAD 489
             + R+  W ++E+ A   P   
Sbjct: 422 KMKEREEAWVKIENLAKANPQVL 444
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 95.37
1qgr_A 876 Protein (importin beta subunit); transport recepto 94.82
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 94.27
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 92.9
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 92.85
1qgr_A 876 Protein (importin beta subunit); transport recepto 92.51
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 92.38
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 92.04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 90.24
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 88.04
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 86.19
2x19_B963 Importin-13; nuclear transport, protein transport; 83.92
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 83.66
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 83.3
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 81.41
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 80.08
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
Probab=100.00  E-value=1.3e-136  Score=1071.33  Aligned_cols=401  Identities=47%  Similarity=0.895  Sum_probs=396.1

Q ss_pred             ChHHhHHHHHHHHhcCcccccc-cCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccccCCCCCCC
Q 010682           80 SNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRS  158 (504)
Q Consensus        80 ~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lP~~~~~  158 (504)
                      |++||++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++|+++++||++||||++||.+++
T Consensus         1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~   80 (403)
T 3fga_B            1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP   80 (403)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred             ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence            5789999999999999999999 899999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhh
Q 010682          159 NGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKF  238 (504)
Q Consensus       159 ~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf  238 (504)
                      ++..||+|||||++||+|||||+||++|+||++|++++++++|+|||++||++|+++||||||||||+|||+||||||||
T Consensus        81 ~~~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf  160 (403)
T 3fga_B           81 TGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF  160 (403)
T ss_dssp             CSTTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhh
Confidence            77789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHH
Q 010682          239 MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQ  318 (504)
Q Consensus       239 ~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~q  318 (504)
                      +++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||+||+||++|
T Consensus       161 ~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~q  240 (403)
T 3fga_B          161 LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQ  240 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcch
Q 010682          319 FIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNE  398 (504)
Q Consensus       319 F~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~  398 (504)
                      |++|||+|+..+++||+||||+|||+|||+||+||++||+.++|++|++++.|+|++||+|++|+|||||||||++|+|+
T Consensus       241 f~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe  320 (403)
T 3fga_B          241 FLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNE  320 (403)
T ss_dssp             HHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH
T ss_pred             HHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010682          399 HILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERL  478 (504)
Q Consensus       399 ~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l  478 (504)
                      +|+++|++|++.|+|+|+|+|++++++|||++|+++|++|+++|||||+++|++|+++|+++++++++++++|+++|++|
T Consensus       321 ~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~~  400 (403)
T 3fga_B          321 YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKI  400 (403)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HH
Q 010682          479 ES  480 (504)
Q Consensus       479 ~~  480 (504)
                      ++
T Consensus       401 ~~  402 (403)
T 3fga_B          401 EN  402 (403)
T ss_dssp             SC
T ss_pred             hc
Confidence            74
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 504
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-161
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  457 bits (1178), Expect = e-161
 Identities = 174/342 (50%), Positives = 239/342 (69%), Gaps = 1/342 (0%)

Query: 77  KDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEP 135
           +DV    ++ LF+ KL  CC + DF SD       +++KR  L E+ ++++      TEP
Sbjct: 2   RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61

Query: 136 AISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSL 195
               +  M ++N+FR  PP     G   + E++EP  + AW HLQ+VY+  LRF+     
Sbjct: 62  IYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDF 121

Query: 196 DVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYR 255
              +AKKY+D  F+++LL+LFDSEDPRERD LKT LHRIYGKF+  R +IR+ + NI YR
Sbjct: 122 QPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR 181

Query: 256 FVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYC 315
           F++ETE HNGIAELLEI GSII+GFALPLKEEHKIFL + L+PLHK KS+ +YH QL YC
Sbjct: 182 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 241

Query: 316 VVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRR 375
           VVQF++KD  L    +  LLKYWP T+S KE+MF++ELEE+L++   +EF KIM PLFR+
Sbjct: 242 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQ 301

Query: 376 IGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFP 417
           +  C++S H+QVAERA   WNNE+I++L++ N   I+P++FP
Sbjct: 302 LAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 343

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 94.15
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 93.33
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 91.22
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 91.05
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 90.18
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 86.77
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 84.11
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 81.62
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-115  Score=895.67  Aligned_cols=342  Identities=51%  Similarity=0.948  Sum_probs=324.1

Q ss_pred             CCCCChHHhHHHHHHHHhcCcccccc-cCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccccCCC
Q 010682           76 FKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPP  154 (504)
Q Consensus        76 l~dv~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lP~  154 (504)
                      |+|||++||++||++||++||++||| +||++|+++||+||++|+||++|+++++++++|++++++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            68999999999999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 010682          155 KCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRI  234 (504)
Q Consensus       155 ~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrI  234 (504)
                      .+++.+.+||+|||||+.|++|||||+||++|+||++++++|++.+++|||++||.+|+++|+||||||||+||++||||
T Consensus        81 ~~~~~~~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~i  160 (343)
T d2jaka1          81 SSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRI  160 (343)
T ss_dssp             ---------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCccccccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            98887677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHH
Q 010682          235 YGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTY  314 (504)
Q Consensus       235 Y~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~  314 (504)
                      ||||+++|++||++|+++|++||||+++||||+|||||+|||||||++|||+||+.|+.++|+|||++++++.||+||+|
T Consensus       161 y~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~  240 (343)
T d2jaka1         161 YGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY  240 (343)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHh
Q 010682          315 CVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLL  394 (504)
Q Consensus       315 ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~  394 (504)
                      |++||++|||+|+..+++||+||||+||++|||+||+||++||+.+++++|+++++|+|++||+|++|+|||||||||++
T Consensus       241 ~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl~~  320 (343)
T d2jaka1         241 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYY  320 (343)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGG
T ss_pred             HHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhHHHHhhhccccccccchH
Q 010682          395 WNNEHILNLVTHNRQVIIPLVFP  417 (504)
Q Consensus       395 w~N~~i~~li~~n~~~I~Pii~p  417 (504)
                      |+|++|+++|++|++.|+|+|+|
T Consensus       321 w~N~~~~~li~~n~~~i~Pii~P  343 (343)
T d2jaka1         321 WNNEYIMSLISDNAAKILPIMFP  343 (343)
T ss_dssp             GGCHHHHHHHHHTHHHHTTTSCC
T ss_pred             HCCHHHHHHHHhCccceEeeeCC
Confidence            99999999999999999999987
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure