Citrus Sinensis ID: 010717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500---
Protein Sequence
MNSNYNNKSKVSTPGMLNNFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQPKPAWQPSKPSWTHQPAQTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNLFGDLVSSALGQGNDKSNSNVPLKNATPTSNKSSYSMGNLADSLPKTSNPVKISGNSGTGQSFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNGIRPNNDPFGSLFDMGSKQSGGSLNSASKGSKAGSGDDGFGDFQNASKPSTTAFPSSSFSSSDNDFMGSNMGDFGMPAMDHSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATASGGGQPFSEVDDWGYSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMVD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccEEHHcHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mnsnynnkskvstpgmlnnfnfdlgvgsnkpaslidqrnrttpsftssftssttatqpkpawqpskpswthqpaqtgiesapvsmvgdihgkswattapsksssgigivdknpnlfGDLVSSalgqgndksnsnvplknatptsnkssysmgnladslpktsnpvkisgnsgtgqsfgsyssgysgsnnssyvKTNANVNVNVNvnkssnlgappmknmsgngirpnndpfgslfdmgskqsggslnsaskgskagsgddgfgdfqnaskpsttafpsssfsssdndfmgsnmgdfgmpamdhstqnkpssqsqstggdplgmffssssasagvgatasgggqpfsevddwgysdfgggtddggttteleglppppagvtgaaaknkgvdnqkagqYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVlkidpsnriarsTIHRLTKMVD
Flexible Loop (DISEMBL)
mnsnynnkskvstpgMLNNFNFDLGVGSNKPaslidqrnrttpsftssftssttatqpkpawqpskpSWTHQPAQTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNLFGDLVSSALgqgndksnsnvplknatptsnkssySMGNLADSLPKTSNPVKISGNSGTGQSFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNGIRPNNDPFGSLFDMGSKQSGGSLNSASKGSKAGSGDDGFGDFQNASKPSTTAFPSSSFSSSDNDFMGSNMGDFGMPAMDHSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATASGGGQPFSEVDDWGYSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSkvleqddtnvsVLVQRALLYESMEKYKLGAEDLRtvlkidpsnriarstihrltkmvd
Low Complexity Region (SEG)
MNSNYNNKSKVSTPGMLNNFNFDLGVGSNKPASLIDQRNRttpsftssftssttatQPKPAWQPSKPSWTHQPAQTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNLFGDLVSSALGQGNDKSNSNVPLKNATPTSNKSSYSMGNLADSLPKTSNPVKISGNsgtgqsfgsyssgysgsnnssyvktnanvnvnvnvnkssnLGAPPMKNMSGNGIRPNNDPFGSLFDMGSKQsggslnsaskgskagsgddgfgdfQNaskpsttafpsssfsssDNDFMGSNMGDFGMPAMDHSTQNKPSSQSQSTGGDPLGMFFssssasagvgatasgggQPFSEVDDWGYSDFgggtddggttteleglppppagvtgaaaKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMVD
Disordered region (IsUnstruct)
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID******************
Disordered Region (DISOPRED)
****************LNNFNFDL*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV*
Disordered Region (DISEMBL)
**********VSTPGMLNNFNFDLGVGSNKPASLIDQRNR**********************************QTGIESAPVSMVGDIHGKSWA*********GIGIVDKNPNLFGDLVSSALGQGNDKSNSNVPLK***********SMGNLADSLPKTSNPVKISGNSGTGQSFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNGIRPNNDPFGSLFDMGS*******************DDGFGDFQNAS**************SDNDFMGSNMGDFGMPAMD***************GDPLGMFFSSSSA**********GGQPFSEVDDWGYSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMVD
Disordered Region (DISPRO)
****************LNNFNFDLGV******************************************************************************GIGIVDKNPNLFGDLVS*************************************************************************************************************************************************************************************************************************************************************PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMVD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSNYNNKSKVSTPGMLNNFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQPKPAWQPSKPSWTHQPAQTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNLFGDLVSSALGQGNDKSNSNVPLKNATPTSNKSSYSMGNLADSLPKTSNPVKISGNSGTGQSFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNGIRPNNDPFGSLFDMGSKQSGGSLNSASKGSKAGSGDDGFGDFQNASKPSTTAFPSSSFSSSDNDFMGSNMGDFGMPAMDHSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATASGGGQPFSEVDDWGYSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	503	2.2.26 [Sep-21-2011]
Q5U2X2	893	Sperm-associated antigen	yes	no	0.234	0.132	0.341	2e-11
Q07617	926	Sperm-associated antigen	yes	no	0.242	0.131	0.333	2e-11
Q80ZX8	901	Sperm-associated antigen	yes	no	0.254	0.142	0.315	4e-11
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.204	0.186	0.314	5e-08
Q3KRD5	309	Mitochondrial import rece	no	no	0.228	0.372	0.341	1e-07
Q9CYG7	309	Mitochondrial import rece	no	no	0.228	0.372	0.341	1e-07
Q75Q39	610	Mitochondrial import rece	no	no	0.240	0.198	0.303	3e-07
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.204	0.184	0.295	6e-07
A4K2V0	309	Mitochondrial import rece	no	no	0.214	0.349	0.327	7e-07
F4KCL7	603	Outer envelope protein 64	no	no	0.222	0.185	0.305	8e-07

>sp|Q5U2X2|SPAG1_RAT Sperm-associated antigen 1 OS=Rattus norvegicus GN=Spag1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSG-DMATMMEVL-STRASCYKEVGEYKKAVA 442
           K++G +  + GQ+A+A    S A+  LE +G + A  + +L S RA+CY + G  +  + 
Sbjct: 433 KSRGNELFRGGQFAEAAVQYSGAIAQLEPTGSENADELSILYSNRAACYLKEGNCRGCIQ 492

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
           DC + LE     V  L++RA+ YE++E+Y+    D  TVLKID   ++A  +++R+T+++
Sbjct: 493 DCDRALELQPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKIDCRIQLASDSVNRITRIL 552

Binds GTP and has GTPase activity (By similarity). Plays a role in fertilization.
Rattus norvegicus (taxid: 10116)

>sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 81/129 (62%), Gaps = 7/129 (5%)

Query: 376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-DMATMMEVL-STRASCYKE 433
           PAG+     K++G +  ++GQ+A+A    S A+ LLE +G ++A  + +L S RA+CY +
Sbjct: 445 PAGL-----KSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYLK 499

Query: 434 VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
            G     + DC++ LE    ++  L++RA+ YE++E+Y     D +TVL+ID   ++A  
Sbjct: 500 EGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLAND 559

Query: 494 TIHRLTKMV 502
           +++RL++++
Sbjct: 560 SVNRLSRIL 568

Plays a role in fertilization. Binds GTP and has GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q80ZX8|SPAG1_MOUSE Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVL-STRASCYK 432
           P A    +  K +G +  + GQ+A+A    S A+  LE +G   A  + +L S RA+CY 
Sbjct: 424 PRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQLEPTGSANADELSILYSNRAACYL 483

Query: 433 EVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492
           + G  +  + DC++ LE    +V  L++RA+ YE++E+Y+    D +TVL+ID   ++A 
Sbjct: 484 KEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCGIQLAS 543

Query: 493 STIHRLTKMV 502
            + +R+ +++
Sbjct: 544 DSANRIARIL 553

Plays a role in fertilization. Binds GTP and has GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTR--ASCYKEVGEYKKAVADCSKVLEQDDT 453
           +Y  A+K++ +     E+    A  ++V      A+C  ++ +YK+A   C+KVLE + T
Sbjct: 422 RYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELEST 481

Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498
           NV  L +RA  Y  +    L   D++  L+IDP+NR  +    RL
Sbjct: 482 NVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRL 526

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3KRD5|TOM34_RAT Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMME--VLSTRASCYKEVGEYKKAVADCS 445
           G  N + GQY +A      A+ LL+  G      E  + S RA+CY + G     + DC+
Sbjct: 16  GNQNFRNGQYGEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDGNCTDCIKDCT 75

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
             L     ++  L++RA  YE++EKY L   D +TVL+ID S   A   I+R+T+ +
Sbjct: 76  SALALVPFSIKPLLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGINRITRAL 132

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Rattus norvegicus (taxid: 10116)

>sp|Q9CYG7|TOM34_MOUSE Mitochondrial import receptor subunit TOM34 OS=Mus musculus GN=Tomm34 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMME--VLSTRASCYKEVGEYKKAVADCS 445
           G  N + GQY +A      A+ LL+  G      E  + S RA+CY + G     + DC+
Sbjct: 16  GNQNFRNGQYGEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDGNCTDCIKDCT 75

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
             L     ++  L++RA  YE++EKY L   D +TVL+ID S   A   I+R+T+ +
Sbjct: 76  SALALVPFSIKPLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGINRITRAL 132

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Mus musculus (taxid: 10090)

>sp|Q75Q39|TOM70_RAT Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus GN=Tomm70a PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 11/132 (8%)

Query: 356 FGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILL--EK 413
            G G D  G + E+  L          AAKNKG    KAG+Y  AI+  + A+ L   EK
Sbjct: 97  LGSGPDGSGDSLEMSSLD------RAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEK 150

Query: 414 SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKL 473
           + D++T  +    RA+ ++++ ++K+   DC+K +E +   V  L +RA  +E ++  K 
Sbjct: 151 NADLSTFYQ---NRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKE 207

Query: 474 GAEDLRTVLKID 485
             ED+  V  ++
Sbjct: 208 CLEDVTAVCILE 219

Receptor that accelerates the import of all mitochondrial precursor proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTR--ASCYKEVGEYKKAVADCSKVLEQDDT 453
           +Y  A K++ +     E     +  +++      A+C  ++ +YK+A   C+KVLE D  
Sbjct: 423 RYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKDYKQAEKLCTKVLELDSR 482

Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498
           NV  L +RA  Y  +   +L   D++  L+IDP NR  + T   L
Sbjct: 483 NVKALYRRAQAYTQLADLELAEVDIKKALEIDPENRDVKLTYKTL 527

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|A4K2V0|TOM34_PONAB Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 395 GQYADAIKWLSWAVILLEKSG--DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD 452
           GQYA+A      A+ +L+  G  D      + S RA+C+ + G  +  + DC+  L    
Sbjct: 23  GQYAEASALYGRALRVLQAQGSSDPEEESVLYSNRAACHLKDGNCRDCIKDCTSALALVP 82

Query: 453 TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
            ++  L++RA  YE++EKY +   D +TVL+ID S   A   I+R+T+ +
Sbjct: 83  FSIKPLLRRASAYEALEKYPMAYVDYKTVLQIDDSVTSALEGINRMTRAL 132

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Pongo abelii (taxid: 9601)

>sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
           K KG    K  Q+  A+ + + A+ L   +G  AT       RA+ + E+  +++A  DC
Sbjct: 492 KEKGNAAYKGKQWNKAVNFYTEAIKL---NGANATYY---CNRAAAFLELCCFQQAEQDC 545

Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
           +K +  D  NV   ++R    ES+ +YK  A D R  L ++P N+ A+    RL K +
Sbjct: 546 TKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKRLRKHI 603

Chaperone receptor mediating Hsp90-dependent protein targeting to mitochondria.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
255551849	508	chaperone binding protein, putative [Ric	0.962	0.952	0.616	1e-148
359477170	496	PREDICTED: uncharacterized protein LOC10	0.934	0.947	0.614	1e-144
147819173	532	hypothetical protein VITISV_012016 [Viti	0.934	0.883	0.570	1e-138
449432882	497	PREDICTED: uncharacterized protein LOC10	0.922	0.933	0.573	1e-135
449503834	497	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.922	0.933	0.571	1e-135
296083325	451	unnamed protein product [Vitis vinifera]	0.862	0.962	0.579	1e-132
356519946	478	PREDICTED: uncharacterized protein LOC10	0.856	0.901	0.581	1e-123
356564607	442	PREDICTED: uncharacterized protein LOC10	0.840	0.957	0.565	1e-122
297830284	474	tetratricopeptide repeat-containing prot	0.904	0.959	0.542	1e-119
30684217	475	tetratricopeptide repeat domain-containi	0.886	0.938	0.509	1e-112

>gi|255551849|ref|XP_002516970.1| chaperone binding protein, putative [Ricinus communis] gi|223544058|gb|EEF45584.1| chaperone binding protein, putative [Ricinus communis]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 325/527 (61%), Positives = 373/527 (70%), Gaps = 43/527 (8%)

Query: 1   MNSNYNNKSKVSTPGMLNNFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQPKP 60
           MNSNY       T G LNNFNFD G+GSN+  SL DQ+N+T+ S++S   SS+T TQ KP
Sbjct: 1   MNSNYGK----GTSGSLNNFNFDFGIGSNRSKSLNDQKNQTSSSYSSY--SSSTTTQSKP 54

Query: 61  AWQPSKPSWTHQPA-----QTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNL 115
           AWQ +KPSWTHQPA     + G+ + P SMVGDI GKSW +     S SG+GIV+K+PNL
Sbjct: 55  AWQSNKPSWTHQPAPSQSTRPGL-NGPSSMVGDISGKSWNSMGVG-SGSGLGIVEKSPNL 112

Query: 116 FGDLVSSALGQGNDKSNSNVPLKNATPTSNKSSYSMGNLADSLPKTSNPVKISGNSGTGQ 175
           FGDLVSSALGQG  K  S+VPLKN TPTS+ S+YSMGN+ADSLPKT N VK  G+ G   
Sbjct: 113 FGDLVSSALGQGT-KGKSDVPLKNVTPTSSNSAYSMGNMADSLPKTGNSVKSGGSWGFND 171

Query: 176 SFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNGIRPN-----NDP 230
           + GSY S       SS V  NA+ N N++ NKSSNLG P M NM              DP
Sbjct: 172 NIGSYKS-------SSNVNVNASGNANISSNKSSNLGGPSMTNMMSGSGVGGGMGGGRDP 224

Query: 231 FGSLFDMGSKQSGGSLNSASKGSKAGS--GDDGFGDFQNASKPSTTAFPSSSFSSSDNDF 288
           FGSL D GSKQ  G LNSASK S   S  G DGFGDFQNA+  S TAFPS +F++S+N F
Sbjct: 225 FGSLVDFGSKQQAGGLNSASKSSVKTSSGGKDGFGDFQNATGSSATAFPSGNFAASNNGF 284

Query: 289 MGS--------NMGDFGMPAMDHSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATASG 340
            GS        N   FGMP  D + Q + S Q+ S  GDPL M FSSS+  A   +  +G
Sbjct: 285 TGSGNTFNSDVNDFGFGMPNKDSAPQKQTSVQTAS--GDPLEMLFSSSAGGAASASGGAG 342

Query: 341 GGQPFSEVDDWGY----SDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQ 396
           G Q FSEVDDWG         G    G TTTELEGLPPPPAG T +AAKNKG+DNQK GQ
Sbjct: 343 G-QQFSEVDDWGLDSGFGGGAGDDLGGATTTELEGLPPPPAGFTASAAKNKGIDNQKQGQ 401

Query: 397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS 456
           YADAIKWLSWAV+L EK+GD A+ MEVLS+RASCYKEVGEYKKAVADC+KVLE+DD NVS
Sbjct: 402 YADAIKWLSWAVVLFEKTGDKASTMEVLSSRASCYKEVGEYKKAVADCTKVLEEDDANVS 461

Query: 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMVD 503
           VLVQRALLYESMEKYKLGAEDLRTVLKIDP+NRIA+ST+HRLTKM+D
Sbjct: 462 VLVQRALLYESMEKYKLGAEDLRTVLKIDPTNRIAKSTVHRLTKMID 508

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477170|ref|XP_002272460.2| PREDICTED: uncharacterized protein LOC100255130 [Vitis vinifera]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 324/527 (61%), Positives = 367/527 (69%), Gaps = 57/527 (10%)

Query: 1   MNSNYNNKSKVSTPG---MLNNFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQ 57
           MNSNY   +     G    LNN+ FD G+GS++   L DQ+ +      SS +SS +A Q
Sbjct: 1   MNSNYGKTTNSQRGGGSVPLNNYQFDFGLGSSRSRPLNDQKQQ------SSHSSSFSAPQ 54

Query: 58  PKPAWQPSKPSWTHQPAQT-----GIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKN 112
             P WQP+KPSWTHQPA T     G  + P SMVGDI GKSWA +     SSGIGIVDKN
Sbjct: 55  SHP-WQPNKPSWTHQPAPTQTTRSGPSNGPASMVGDIFGKSWAPSP--GPSSGIGIVDKN 111

Query: 113 PNLFGDLVSSALGQGNDKSNSNVPLKNATPTS---NKSSYSMGNLADSLPKTSNPVKISG 169
           PNLFGDLV SALG    K NSNVPLKN+TP S    KS YSMGNLADSLPKT N  K  G
Sbjct: 112 PNLFGDLVGSALG----KVNSNVPLKNSTPVSAQSTKSPYSMGNLADSLPKTGNSAKSGG 167

Query: 170 NSGTGQSFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNG-----I 224
           N G  ++FG YSSGY   NNSS            NVNKS+NLG P  ++M+G G     +
Sbjct: 168 NWGNSENFGGYSSGY---NNSS------------NVNKSTNLGGPSTQSMAGAGGGGVGM 212

Query: 225 RPNNDPFGSLFDMGSKQSGGSLNSASKGSKAGSGDDGFGDFQNASKPSTTAFPSSSFSSS 284
               DPFGSL D GSK  G SLNSASKGSK  S D+ FGDFQNA K S +AFPSSSF ++
Sbjct: 213 TSKKDPFGSLVDFGSKPMG-SLNSASKGSKVNSRDEAFGDFQNAPKSSASAFPSSSFPTN 271

Query: 285 DNDF------MGSNMGDFGMPAMDHSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATA 338
           +++           M  FG+P  D  +QN+P  Q+ +   DPL M F+SS ASAG G T 
Sbjct: 272 NSNSMGSSSGFDPKMDSFGIPTQDFGSQNQPPVQTSNV--DPLDMLFASS-ASAGTGPTG 328

Query: 339 SG--GGQPFSEVDDWGY-SDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAG 395
           S   G Q FSE DDWG  SDFGGG D+GGTTTELEGLPPPPAGVT A+AK+KG+DN K G
Sbjct: 329 SERVGEQQFSEGDDWGLDSDFGGGHDNGGTTTELEGLPPPPAGVTAASAKSKGLDNHKQG 388

Query: 396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV 455
           QYADAIKWLSWAV+LLEK+GD A  MEVL+ RASCYKEVGEYKKAVADCSKVLE D+ NV
Sbjct: 389 QYADAIKWLSWAVVLLEKAGDDAGTMEVLTCRASCYKEVGEYKKAVADCSKVLEHDEKNV 448

Query: 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
           SVLVQRALLYES+EKYKLGAEDLRTVLK DP NR+ARSTIHRLTKM 
Sbjct: 449 SVLVQRALLYESIEKYKLGAEDLRTVLKFDPGNRVARSTIHRLTKMA 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819173|emb|CAN69220.1| hypothetical protein VITISV_012016 [Vitis vinifera]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 321/563 (57%), Positives = 365/563 (64%), Gaps = 93/563 (16%)

Query: 1   MNSNYNNKSKVSTPG---MLNNFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQ 57
           MNSNY   +     G    LNN+ FD G+GS++   L DQ+ +++       +SS +A Q
Sbjct: 1   MNSNYGKTTNSQRGGGSVPLNNYQFDFGLGSSRSRPLNDQKQQSS------HSSSFSAPQ 54

Query: 58  PKPAWQPSKPSWTHQPAQT-----GIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKN 112
             P WQP+KPSWTHQPA T     G  + P SMVGDI GKSWA +     SSGIGIVDKN
Sbjct: 55  SHP-WQPNKPSWTHQPAPTQTTRSGSSNGPGSMVGDIFGKSWAPSP--GPSSGIGIVDKN 111

Query: 113 PNLFGDLVSSALGQGNDKSNSNVPLKNATPTS---NKSSYSMGNLADSLPKTSNPVKISG 169
           PNLFGDLV SALG    K NSNVPLKN+TP S    KS YSMGNLADSLPKT N  K  G
Sbjct: 112 PNLFGDLVGSALG----KVNSNVPLKNSTPVSAQSTKSPYSMGNLADSLPKTGNSAKSGG 167

Query: 170 NSGTGQSFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNG-----I 224
           N G  + FG YSSGY   NNSS            NVNKS+NLG P  ++M+G G     +
Sbjct: 168 NWGNSEDFGGYSSGY---NNSS------------NVNKSTNLGGPSTQSMAGAGGGGVGM 212

Query: 225 RPNNDPFGSLFDMGSKQSGGSLNSASKGSKAGSGDDGFGD-------------------- 264
               DPFGSL D GSK  G SLNSASKGSK  S D+ FGD                    
Sbjct: 213 TSKKDPFGSLVDFGSKPMG-SLNSASKGSKVNSRDEAFGDFQNAPKSSASAFPSSAFPAS 271

Query: 265 ----------------FQNASKPSTTAFPSSSFSSSDNDF------MGSNMGDFGMPAMD 302
                           FQNASK S +AF S SF +++++           M  FG+P  D
Sbjct: 272 NSMGGKVNSRDELFGDFQNASKSSASAFSSGSFPTNNSNSMGSSSGFDPKMDSFGIPTQD 331

Query: 303 HSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATASG--GGQPFSEVDDWGY-SDFGGG 359
             +QN+P  Q+ +   DPL M F+SS ASAG G T S   G Q FSE DDWG  SDFGGG
Sbjct: 332 FGSQNQPPVQTSNV--DPLDMLFASS-ASAGTGPTGSERVGEQQFSEGDDWGLDSDFGGG 388

Query: 360 TDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMAT 419
            D+GGTTTELEGLPPPPAGVT A+AK+KG+DN K GQYADAIKWLSWAV+LLEK+GD A 
Sbjct: 389 HDNGGTTTELEGLPPPPAGVTAASAKSKGLDNHKQGQYADAIKWLSWAVVLLEKAGDDAG 448

Query: 420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLR 479
            MEVL+ RASCYKEVGEYKKAVADCSKVLE D+ NVSVLVQRALLYES+EKYKLGAEDLR
Sbjct: 449 TMEVLTCRASCYKEVGEYKKAVADCSKVLEHDEKNVSVLVQRALLYESIEKYKLGAEDLR 508

Query: 480 TVLKIDPSNRIARSTIHRLTKMV 502
           TVLK DP NR+ARSTIHRLTKM 
Sbjct: 509 TVLKFDPGNRVARSTIHRLTKMA 531

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432882|ref|XP_004134227.1| PREDICTED: uncharacterized protein LOC101207802 [Cucumis sativus]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 293/511 (57%), Positives = 353/511 (69%), Gaps = 47/511 (9%)

Query: 19  NFNFDLGVGSNKPASLIDQRNRTTPSFTSSFT---SSTTATQPKPAWQPSKPSWTHQPA- 74
           NF+FDLG+GS+   SL DQ+N+T PS+ SS+T   SS ++T  +PAWQP+KPSWTHQPA 
Sbjct: 8   NFDFDLGLGSSGSKSLNDQKNKT-PSY-SSYTPSASSYSSTPTRPAWQPNKPSWTHQPAM 65

Query: 75  ----QTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNLFGDLVSSALGQGNDK 130
               +  + ++P SMVGDI GK+W + A S S++GIGI +KNPNLFGDLV SALG G  K
Sbjct: 66  NQAARPNLSNSPASMVGDIFGKTWGSKATSASTTGIGIAEKNPNLFGDLVGSALGSG--K 123

Query: 131 SNSNVPLKNATPTS-------NKSSYSMGNLADSLPKTSNPVKISGNSGTGQSFGSYSSG 183
           SNSN PLKN  P S       N++S+SMGN+ DSLPK+S+    +  + + ++  +Y++G
Sbjct: 124 SNSNTPLKNVGPASVSSGAALNRNSFSMGNMNDSLPKSSSNPSKNSGNWSFENLSNYNNG 183

Query: 184 YSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNG-IRPNNDPFGSLFDMGSKQS 242
            S  +N++ +KT              NLG P M +  G G      DPFGSL D GSK S
Sbjct: 184 KSNQSNTTNIKT-------------PNLGGPSMSSTIGGGKTSSTKDPFGSLVDFGSKSS 230

Query: 243 GGSLNSASKGSKAGSGDDGFGDFQNASKPSTTAFPSSSFSSSDNDFMGS------NMGDF 296
           G +LNS +K     S +D FGDFQNAS PS T FPSS  S++  DF GS      NMGDF
Sbjct: 231 G-NLNSTTKNQNIKSSEDSFGDFQNASNPSATTFPSSRSSTNGVDFKGSSFNSGINMGDF 289

Query: 297 GMPAMDHSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATASG--GGQPFSEVDDWGY- 353
           GMP   HS   K     Q+T  DPL M FSSS A A     ASG  G     + DDWG  
Sbjct: 290 GMPTNFHS---KVQDTVQTTASDPLDMLFSSSKAPAEGPPLASGTPGASQSLDADDWGLD 346

Query: 354 SDFGGGTDDGG-TTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE 412
           SDFGGG  D G +TTE+EGLPPPPAGVT ++AKNKGVD  + GQYADAIKWLSWAVIL E
Sbjct: 347 SDFGGGGHDVGGSTTEIEGLPPPPAGVTASSAKNKGVDVYRQGQYADAIKWLSWAVILFE 406

Query: 413 KSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYK 472
           K+G+ A ++EVLSTRASCYKEVGEYKKAV DC+ VL+QDD NV+VLVQRALLYESMEKYK
Sbjct: 407 KTGNSAAIVEVLSTRASCYKEVGEYKKAVVDCTMVLDQDDANVAVLVQRALLYESMEKYK 466

Query: 473 LGAEDLRTVLKIDPSNRIARSTIHRLTKMVD 503
           LGAEDLR VLKIDP NR+ARSTIHRLTKM +
Sbjct: 467 LGAEDLRAVLKIDPGNRVARSTIHRLTKMAE 497

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503834|ref|XP_004162200.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223791 [Cucumis sativus]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 292/511 (57%), Positives = 352/511 (68%), Gaps = 47/511 (9%)

Query: 19  NFNFDLGVGSNKPASLIDQRNRTTPSFTSSFT---SSTTATQPKPAWQPSKPSWTHQPA- 74
           NF+FDLG+GS+   SL DQ+N+T PS+ SS+T   SS ++T  +PAWQP+KPSWTHQPA 
Sbjct: 8   NFDFDLGLGSSGSKSLNDQKNKT-PSY-SSYTPSASSYSSTPTRPAWQPNKPSWTHQPAM 65

Query: 75  ----QTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNLFGDLVSSALGQGNDK 130
               +  + ++P SMVGDI GK+W + A S S++GIGI +KNPNLFGD V SALG G  K
Sbjct: 66  NQAARPNLSNSPASMVGDIFGKTWGSKATSASTTGIGIAEKNPNLFGDFVGSALGSG--K 123

Query: 131 SNSNVPLKNATPTS-------NKSSYSMGNLADSLPKTSNPVKISGNSGTGQSFGSYSSG 183
           SNSN PLKN  P S       N++S+SMGN+ DSLPK+S+    +  + + ++  +Y++G
Sbjct: 124 SNSNTPLKNVGPASVSSGAALNRNSFSMGNMNDSLPKSSSNPSKNSGNWSFENLSNYNNG 183

Query: 184 YSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNG-IRPNNDPFGSLFDMGSKQS 242
            S  +N++ +KT              NLG P M +  G G      DPFGSL D GSK S
Sbjct: 184 KSNQSNTTNIKT-------------PNLGGPSMSSTIGGGKTSSTKDPFGSLVDFGSKSS 230

Query: 243 GGSLNSASKGSKAGSGDDGFGDFQNASKPSTTAFPSSSFSSSDNDFMGS------NMGDF 296
           G +LNS +K     S +D FGDFQNAS PS T FPSS  S++  DF GS      NMGDF
Sbjct: 231 G-NLNSTTKNQNIKSSEDSFGDFQNASNPSATTFPSSRSSTNGVDFKGSSFNSGINMGDF 289

Query: 297 GMPAMDHSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATASG--GGQPFSEVDDWGY- 353
           GMP   HS   K     Q+T  DPL M FSSS A A     ASG  G     + DDWG  
Sbjct: 290 GMPTNFHS---KVQDTVQTTASDPLDMLFSSSKAPAEGPPLASGTPGASQSLDADDWGLD 346

Query: 354 SDFGGGTDDGG-TTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE 412
           SDFGGG  D G +TTE+EGLPPPPAGVT ++AKNKGVD  + GQYADAIKWLSWAVIL E
Sbjct: 347 SDFGGGGHDVGGSTTEIEGLPPPPAGVTASSAKNKGVDVYRQGQYADAIKWLSWAVILFE 406

Query: 413 KSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYK 472
           K+G+ A ++EVLSTRASCYKEVGEYKKAV DC+ VL+QDD NV+VLVQRALLYESMEKYK
Sbjct: 407 KTGNSAAIVEVLSTRASCYKEVGEYKKAVVDCTMVLDQDDANVAVLVQRALLYESMEKYK 466

Query: 473 LGAEDLRTVLKIDPSNRIARSTIHRLTKMVD 503
           LGAEDLR VLKIDP NR+ARSTIHRLTKM +
Sbjct: 467 LGAEDLRAVLKIDPGNRVARSTIHRLTKMAE 497

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083325|emb|CBI22961.3| unnamed protein product [Vitis vinifera]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 300/518 (57%), Positives = 335/518 (64%), Gaps = 84/518 (16%)

Query: 1   MNSNYNNKSKVSTPG---MLNNFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQ 57
           MNSNY   +     G    LNN+ FD G+GS++   L DQ+ +      SS +SS +A Q
Sbjct: 1   MNSNYGKTTNSQRGGGSVPLNNYQFDFGLGSSRSRPLNDQKQQ------SSHSSSFSAPQ 54

Query: 58  PKPAWQPSKPSWTHQPAQTGI-ESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNLF 116
             P WQP+KPSWTHQPA T    S P                     SGIGIVDKNPNLF
Sbjct: 55  SHP-WQPNKPSWTHQPAPTQTTRSGP---------------------SGIGIVDKNPNLF 92

Query: 117 GDLVSSALGQGNDKSNSNVPLKNATPTS---NKSSYSMGNLADSLPKTSNPVKISGNSGT 173
           GDLV SALG    K NSNVPLKN+TP S    KS YSMGNLADSLPKT N  K  GN G 
Sbjct: 93  GDLVGSALG----KVNSNVPLKNSTPVSAQSTKSPYSMGNLADSLPKTGNSAKSGGNWGN 148

Query: 174 GQSFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNGIRPNNDPFGS 233
            ++FG YSSGY+                                N SG G+    DPFGS
Sbjct: 149 SENFGGYSSGYN--------------------------------NSSGVGMTSKKDPFGS 176

Query: 234 LFDMGSKQSGGSLNSASKGSKAGSGDDGFGDFQNASKPSTTAFPSSSFSS------SDND 287
           L D GSK   GSLNSASKGSK  S D+ FGDFQNA K S +AFPSSSF +        + 
Sbjct: 177 LVDFGSKPM-GSLNSASKGSKVNSRDEAFGDFQNAPKSSASAFPSSSFPTNNSNSMGSSS 235

Query: 288 FMGSNMGDFGMPAMDHSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATASG--GGQPF 345
                M  FG+P  D  +QN+P  Q+ +   DPL M F +SSASAG G T S   G Q F
Sbjct: 236 GFDPKMDSFGIPTQDFGSQNQPPVQTSNV--DPLDMLF-ASSASAGTGPTGSERVGEQQF 292

Query: 346 SEVDDWGY-SDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWL 404
           SE DDWG  SDFGGG D+GGTTTELEGLPPPPAGVT A+AK+KG+DN K GQYADAIKWL
Sbjct: 293 SEGDDWGLDSDFGGGHDNGGTTTELEGLPPPPAGVTAASAKSKGLDNHKQGQYADAIKWL 352

Query: 405 SWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL 464
           SWAV+LLEK+GD A  MEVL+ RASCYKEVGEYKKAVADCSKVLE D+ NVSVLVQRALL
Sbjct: 353 SWAVVLLEKAGDDAGTMEVLTCRASCYKEVGEYKKAVADCSKVLEHDEKNVSVLVQRALL 412

Query: 465 YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
           YES+EKYKLGAEDLRTVLK DP NR+ARSTIHRLTKM 
Sbjct: 413 YESIEKYKLGAEDLRTVLKFDPGNRVARSTIHRLTKMA 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519946|ref|XP_003528629.1| PREDICTED: uncharacterized protein LOC100799789 [Glycine max]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 288/495 (58%), Positives = 341/495 (68%), Gaps = 64/495 (12%)

Query: 19  NFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQPKPAWQPSK-PSWTHQPA--- 74
           NF+FDLG+GSN+P SL DQ+N   P  T   + STT T    + QP+K P+WTHQP+   
Sbjct: 38  NFDFDLGIGSNRPKSLNDQKN---PKPTPYSSYSTTTTASYSSSQPNKQPAWTHQPSPTQ 94

Query: 75  QTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNLFGDLVSSALGQGNDKSNSN 134
            T +   P SMVGDI GKSW T  PS +S  IGIV+KNPNLFGDLVSSALGQG   S +N
Sbjct: 95  TTALPGGPPSMVGDIFGKSWGTPQPSSASKNIGIVNKNPNLFGDLVSSALGQG---SKTN 151

Query: 135 VPLKNA-TPTSNKSSYSMGNLADSLPKTSNPVKISGNSGTGQSFGSYSSGYSGSNNSSYV 193
           VPLKNA TP  NKS++SMGN+ADSLPKT +         T QS  +++S   G       
Sbjct: 152 VPLKNAPTPAPNKSTFSMGNMADSLPKTGS---------TPQSSSTWASSSGG------- 195

Query: 194 KTNANVNVNVNVNKSS-NLGAPPMKNM-SGNGIRPNN-DPFGSLFDMGSKQSGGSLNSAS 250
                   NV+ NK++ NLG P ++NM +G G   NN DPF SL  +GSKQS  +LNSA 
Sbjct: 196 -------FNVSANKTTLNLGGPSLRNMGTGIGTNSNNKDPFSSLSGIGSKQSA-TLNSAP 247

Query: 251 KGSKAGSGDDGFGDFQNASKPSTTAFPSSSFSSSDNDFMGSNMGDFGMPAMDHSTQNKPS 310
           KG K   GDDGFGDFQNASKPS+TAFP ++    D +F GS  GD               
Sbjct: 248 KGPKVDLGDDGFGDFQNASKPSSTAFPFTASPGIDINFTGS--GD--------------- 290

Query: 311 SQSQSTGGDPLGMFFSSSSASAGVGATASGGGQPFSEVDDWGY-SDFGGGTDDGGTTT-E 368
                  GDP+ MFF+++S+SA  G  A+      ++ DDWG  S+FGGG  D G TT E
Sbjct: 291 ------SGDPMDMFFTATSSSASGGGAAAASDGFGTQ-DDWGLDSEFGGGGHDVGGTTTE 343

Query: 369 LEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRA 428
           LEGLPPPP+GV+G+ AK KG+DN K GQ+ADAIKWLSWAVILL+K+GD A  +EVLS RA
Sbjct: 344 LEGLPPPPSGVSGSTAKGKGMDNYKQGQFADAIKWLSWAVILLQKAGDSAATVEVLSCRA 403

Query: 429 SCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           SCYKEVGEYKKAVADC+KVLE D+TNVSVLVQRALLYESMEKY+LGAEDLRTVLKIDP N
Sbjct: 404 SCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALLYESMEKYRLGAEDLRTVLKIDPGN 463

Query: 489 RIARSTIHRLTKMVD 503
           RIARST+HRL KM D
Sbjct: 464 RIARSTVHRLAKMAD 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564607|ref|XP_003550543.1| PREDICTED: uncharacterized protein LOC100800725 [Glycine max]

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 282/499 (56%), Positives = 336/499 (67%), Gaps = 76/499 (15%)

Query: 19  NFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQPKPAWQPSKPSWTHQPA---Q 75
           NF+FDLG+GSN+P SL DQ+N   P  TSS++S+             +P+WTH+PA    
Sbjct: 6   NFDFDLGIGSNRPKSLNDQKN---PKPTSSYSSA-------------QPAWTHRPAPTQT 49

Query: 76  TGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPNLFGDLVSSALGQGNDKSNSNV 135
           T +   P SMVGDI GKSW T  PS +S  IGIV+KNPNLFGDLVSSALG G   S +NV
Sbjct: 50  TALPGGPPSMVGDIFGKSWGTPQPSSASKNIGIVNKNPNLFGDLVSSALGLG---SKTNV 106

Query: 136 PLKNATPTSNKSSYSMGNLADSLPKTSNPVKISGNSGTGQSFGSYSSGYSGSNNSSYVKT 195
           PLKNA   +  +++SMGN+ADSLPKT +         T QS  S++S   G         
Sbjct: 107 PLKNAPAPNKTTTFSMGNMADSLPKTGS---------TPQSSASWASSSGG--------- 148

Query: 196 NANVNVNVNVNKSS-NLGAPPMKNMSGNGI----RPNNDPFGSLFDMGSKQSGGSLNSAS 250
                 NVN NK++ NLG P ++NM G+GI      N DPF SL  +GSKQS  +LNSA+
Sbjct: 149 -----FNVNANKTTPNLGGPSLRNM-GSGIGTNSNTNKDPFSSLSGIGSKQSS-TLNSAA 201

Query: 251 KGSKAGSGDDGFGDFQNASKPSTTAFPSSSFSSSDNDFMGSNMGDFGMPAMDHSTQNKPS 310
           KG K   GDDGFGDFQNASKPS+ AFPS++    D +F               ST    S
Sbjct: 202 KGPKVDLGDDGFGDFQNASKPSSAAFPSTASPGIDINFT-------------RSTAAAAS 248

Query: 311 SQSQSTGGDPLGMFFSSSSASAGVGATASG----GGQPFSEVDDWGY-SDFGGGTDDGGT 365
           +Q    GGDP+ MFF++ S+SA     A+     GGQ     D+WG  S+FGGG  D G 
Sbjct: 249 NQGSGGGGDPMDMFFTTISSSASGEGAAAASDGFGGQ-----DNWGLDSEFGGGGQDVGG 303

Query: 366 TT-ELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVL 424
           TT ELEGLPPPPAGV+G+ AK KG+D+ K GQ+ADAIKWLSWAV+LLEK+GD AT  EVL
Sbjct: 304 TTTELEGLPPPPAGVSGSTAKGKGMDSYKQGQFADAIKWLSWAVVLLEKAGDSATTGEVL 363

Query: 425 STRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484
           S+RASCYKEVGEYKKAVADC+KVLE D+TNVSVLVQRALLYESMEKY+LGAEDLRTVLKI
Sbjct: 364 SSRASCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALLYESMEKYRLGAEDLRTVLKI 423

Query: 485 DPSNRIARSTIHRLTKMVD 503
           DP NRIAR T+HRL KM D
Sbjct: 424 DPGNRIARGTVHRLAKMAD 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830284|ref|XP_002883024.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328864|gb|EFH59283.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 282/520 (54%), Positives = 342/520 (65%), Gaps = 65/520 (12%)

Query: 1   MNSNYNNKSKVSTPGMLNNFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQPKP 60
           MNSN+  +S     G +N+F+FDLG+GS++   L  Q+++T     SS+TSS +  QP+P
Sbjct: 1   MNSNFGKRSS----GPINSFDFDLGLGSSQGRPLNGQKSQT-----SSYTSSNS--QPRP 49

Query: 61  AWQPSKPSWTHQPA------QTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPN 114
           AWQP KPSWTHQPA      ++ I S P SMVGDIHGK+W + + S S  GI  V+K+P+
Sbjct: 50  AWQPGKPSWTHQPAPKQSTIRSEIGSGPTSMVGDIHGKTWGSASGSGSGIGI--VNKDPS 107

Query: 115 LFGDLVSSALGQGNDKSNSNVPLKNATPTS----NKSSYSMGNLADSLPKTSNPVKISGN 170
           LFGDLV SA+GQG  KS+ NVPLKNA P S    +KS YSMGN ADSLPK+ N +K    
Sbjct: 108 LFGDLVGSAIGQG--KSSRNVPLKNAPPVSASGSSKSPYSMGNFADSLPKSGNSMK---- 161

Query: 171 SGTGQSFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSGNGIRPNN-- 228
            G G  + S  SG+SG       K++  +N  VN N S NLG P MKNMSG  +  +   
Sbjct: 162 PGGGMGYSSNPSGFSGG-----YKSSGGMNSGVNANSSPNLGGPSMKNMSGGNLSGSGLS 216

Query: 229 ---DPFGSLFDMGSKQSGGSLNSASKGSKAG--SGDDGFGDFQNASKPSTTAFPSSSFSS 283
              DPFGSL   GSK SG S+NS  K  K    +  D FG+FQ  S  +     SS F+S
Sbjct: 217 SNSDPFGSLVGFGSKPSG-SINSGIKTGKVNNNAQSDAFGNFQGVSNVN-----SSGFAS 270

Query: 284 SDNDFMGSNMGDFGMPAMDHSTQNKPSS-QSQSTGGDPLGMFFSSSSASAGVGATASGGG 342
             N F  S+ G F    +D   Q  PS  QS S   DPLGMF  SSS      AT     
Sbjct: 271 KSNTF--SSGGGFNASNVDFCVQ--PSGPQSSSANDDPLGMF--SSSKPTAAAATP---- 320

Query: 343 QPFSEVDDWGYSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIK 402
               + +DWG+  F GG    G+TTEL+GLPPPP GV+  +AK+KG+DNQ+ GQYADAIK
Sbjct: 321 ----QTEDWGFESFDGGA---GSTTELDGLPPPPPGVSATSAKSKGIDNQRQGQYADAIK 373

Query: 403 WLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462
           WLSWAVIL++++GD A   EVLSTRASCYKEVGEYKKAVADC+KVL+ D  NV++LVQRA
Sbjct: 374 WLSWAVILMDRAGDEAGSAEVLSTRASCYKEVGEYKKAVADCTKVLDHDKKNVTILVQRA 433

Query: 463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
           LLYESMEKYKLGAEDLR VLKIDP NRIARST+HRLTKM 
Sbjct: 434 LLYESMEKYKLGAEDLRMVLKIDPGNRIARSTVHRLTKMA 473

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684217|ref|NP_851004.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|44917447|gb|AAS49048.1| At3g16760 [Arabidopsis thaliana] gi|50253544|gb|AAT71974.1| At3g16760 [Arabidopsis thaliana] gi|110736446|dbj|BAF00191.1| hypothetical protein [Arabidopsis thaliana] gi|332642341|gb|AEE75862.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 270/530 (50%), Positives = 339/530 (63%), Gaps = 84/530 (15%)

Query: 1   MNSNYNNKSKVSTPGMLNNFNFDLGVGSNKPASLIDQRNRTTPSFTSSFTSSTTATQPKP 60
           MNSN+  +S  ST    N+F+FDLG+GS++   L           + + + S++ +QP+P
Sbjct: 1   MNSNFGKRSSGST----NSFDFDLGLGSSQGRPL-------NGQKSQTSSYSSSNSQPRP 49

Query: 61  AWQPSKPSWTHQPA------QTGIESAPVSMVGDIHGKSWATTAPSKSSSGIGIVDKNPN 114
           AWQP KPSWTHQPA      ++ I S P SMVGDIHGK+W + + S S  GI  V+K+P+
Sbjct: 50  AWQPGKPSWTHQPAPKQSTIRSEIGSGPTSMVGDIHGKTWGSASGSGSGIGI--VNKDPS 107

Query: 115 LFGDLVSSALGQGNDKSNSNVPLKNATPTS----NKSSYSMGNLADSLPKTSNPVKISGN 170
           LFGDLV SA+GQG  KS+ NVPLKNA P S    +KS YSMGNL DSLPK+ N +K    
Sbjct: 108 LFGDLVGSAIGQG--KSSRNVPLKNAPPVSASGSSKSPYSMGNLGDSLPKSGNSMK---- 161

Query: 171 SGTGQSFGSYSSGYSGSNNSSYVKTNANVNVNVNVNKSSNLGAPPMKNMSG-----NGIR 225
           +G G  + S  SG+SG   SS        N        +NLG P MKNM+G     +G+ 
Sbjct: 162 TGGGMGYSSNPSGFSGGYTSS-----GGFN--------ANLGGPSMKNMAGGNLNGSGLP 208

Query: 226 PNNDPFGSLFDMGSKQSG---GSLNSASKGSKAGSGDDGFGDFQNASKPSTTAFPSSSFS 282
            N+DPFGSL   GSK SG   G +N+ ++       +D FG+FQ  S  ++    S+  +
Sbjct: 209 SNSDPFGSLVGFGSKSSGSKPGKVNNNAQ-------NDTFGNFQGVSNLNSGG--STGTT 259

Query: 283 SSDNDFMG---------SNMGDFGMPAMDHSTQNKPSS-QSQSTGGDPLGMFFSSSSASA 332
           +  NDF G         S+ G F    +D   Q  PS  QS S   DPLGMF +S  ++A
Sbjct: 260 TQINDFGGFQASKSNTFSSGGSFNASNVDFGVQ--PSGPQSSSANDDPLGMFSNSKPSAA 317

Query: 333 GVGATASGGGQPFSEVDDWGYSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQ 392
                      P  + +DWG+  F GG    G+TTEL+GLPPPP GV+  +AKNKG+DNQ
Sbjct: 318 ----------PPTPQTEDWGFESFDGGA---GSTTELDGLPPPPPGVSATSAKNKGIDNQ 364

Query: 393 KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD 452
           + GQYADAIKWLSWAVIL++++GD A   EVLSTRASCYKEVGEYKKAVADC+KVL+ D 
Sbjct: 365 RQGQYADAIKWLSWAVILMDRAGDEAGSAEVLSTRASCYKEVGEYKKAVADCTKVLDHDK 424

Query: 453 TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
            NV++LVQRALLYESMEKYKLGAEDLR VLKIDP NRIARST+HRLTKM 
Sbjct: 425 KNVTILVQRALLYESMEKYKLGAEDLRMVLKIDPGNRIARSTVHRLTKMA 474

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
TAIR|locus:2089353	475	AT3G16760 [Arabidopsis thalian	0.544	0.576	0.456	3.3e-98
UNIPROTKB|Q07617	926	SPAG1 "Sperm-associated antige	0.234	0.127	0.333	4.1e-11
RGD|1310702	893	Spag1 "sperm associated antige	0.234	0.132	0.341	5e-11
MGI|MGI:1349387	901	Spag1 "sperm associated antige	0.234	0.130	0.325	2.4e-10
RGD|1309029	309	Tomm34 "translocase of outer m	0.224	0.365	0.365	7.3e-09
MGI|MGI:1914395	309	Tomm34 "translocase of outer m	0.224	0.365	0.365	9.4e-09
UNIPROTKB|F1P4X4	304	TOMM34 "Uncharacterized protei	0.230	0.381	0.313	1.2e-08
UNIPROTKB|B6GVA2	261	int106 "Tetratricopeptide repe	0.214	0.413	0.295	1.9e-08
UNIPROTKB|Q15785	309	TOMM34 "Mitochondrial import r	0.224	0.365	0.330	7.9e-08
TAIR|locus:2118776	277	TPR1 "tetratricopeptide repeat	0.206	0.375	0.295	9.6e-08

TAIR|locus:2089353 AT3G16760 [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
 Identities = 138/302 (45%), Positives = 159/302 (52%)

Query:   211 LGAPPMKNMSG-----NGIRPNNDPFGSLFDMGSKQXXXXXXXXXXXXXXXXXXXXXXXX 265
             LG P MKNM+G     +G+  N+DPFGSL   GSK                         
Sbjct:   189 LGGPSMKNMAGGNLNGSGLPSNSDPFGSLVGFGSKSSGSKPGKVNNNAQNDTFGNFQGVS 248

Query:   266 Q-----NXXXXXXXXXXXXXXXXXDNDFMGSNMGDFGMPAMDHSTQNKPSS-QSQSTGGD 319
                   +                  N F  S+ G F    +D   Q  PS  QS S   D
Sbjct:   249 NLNSGGSTGTTTQINDFGGFQASKSNTF--SSGGSFNASNVDFGVQ--PSGPQSSSANDD 304

Query:   320 PLGMFFXXXXXXXXXXXXXXXXXQPFSEVDDWGYSDFXXXXXXXXXXXXXXXXXXXXXXX 379
             PLGMF                   P  + +DWG+  F                       
Sbjct:   305 PLGMF----------SNSKPSAAPPTPQTEDWGFESFDGGAGSTTELDGLPPPPPGVSAT 354

Query:   380 XXXXXKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK 439
                  KNKG+DNQ+ GQYADAIKWLSWAVIL++++GD A   EVLSTRASCYKEVGEYKK
Sbjct:   355 SA---KNKGIDNQRQGQYADAIKWLSWAVILMDRAGDEAGSAEVLSTRASCYKEVGEYKK 411

Query:   440 AVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499
             AVADC+KVL+ D  NV++LVQRALLYESMEKYKLGAEDLR VLKIDP NRIARST+HRLT
Sbjct:   412 AVADCTKVLDHDKKNVTILVQRALLYESMEKYKLGAEDLRMVLKIDPGNRIARSTVHRLT 471

Query:   500 KM 501
             KM
Sbjct:   472 KM 473

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q07617 SPAG1 "Sperm-associated antigen 1" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 40/120 (33%), Positives = 77/120 (64%)

Query:   385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSG-DMATMMEVL-STRASCYKEVGEYKKAVA 442
             K++G +  ++GQ+A+A    S A+ LLE +G ++A  + +L S RA+CY + G     + 
Sbjct:   449 KSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYLKEGNCSGCIQ 508

Query:   443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
             DC++ LE    ++  L++RA+ YE++E+Y     D +TVL+ID   ++A  +++RL++++
Sbjct:   509 DCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLANDSVNRLSRIL 568

GO:0005525 "GTP binding" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1310702 Spag1 "sperm associated antigen 1" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 41/120 (34%), Positives = 73/120 (60%)

Query:   385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSG-DMATMMEVL-STRASCYKEVGEYKKAVA 442
             K++G +  + GQ+A+A    S A+  LE +G + A  + +L S RA+CY + G  +  + 
Sbjct:   433 KSRGNELFRGGQFAEAAVQYSGAIAQLEPTGSENADELSILYSNRAACYLKEGNCRGCIQ 492

Query:   443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
             DC + LE     V  L++RA+ YE++E+Y+    D  TVLKID   ++A  +++R+T+++
Sbjct:   493 DCDRALELQPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKIDCRIQLASDSVNRITRIL 552

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:1349387 Spag1 "sperm associated antigen 1" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 39/120 (32%), Positives = 72/120 (60%)

Query:   385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVL-STRASCYKEVGEYKKAVA 442
             K +G +  + GQ+A+A    S A+  LE +G   A  + +L S RA+CY + G  +  + 
Sbjct:   434 KRRGNELFRGGQFAEAAAQYSVAIAQLEPTGSANADELSILYSNRAACYLKEGNCRDCIQ 493

Query:   443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
             DC++ LE    +V  L++RA+ YE++E+Y+    D +TVL+ID   ++A  + +R+ +++
Sbjct:   494 DCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARIL 553

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

RGD|1309029 Tomm34 "translocase of outer mitochondrial membrane 34" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 42/115 (36%), Positives = 61/115 (53%)

Query:   388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMME-VL-STRASCYKEVGEYKKAVADCS 445
             G  N + GQY +A      A+ LL+  G      E VL S RA+CY + G     + DC+
Sbjct:    16 GNQNFRNGQYGEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDGNCTDCIKDCT 75

Query:   446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
               L     ++  L++RA  YE++EKY L   D +TVL+ID S   A   I+R+T+
Sbjct:    76 SALALVPFSIKPLLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGINRITR 130

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISO

GO:0006626 "protein targeting to mitochondrion" evidence=IEA;ISO

GO:0031072 "heat shock protein binding" evidence=IEA;ISO

MGI|MGI:1914395 Tomm34 "translocase of outer mitochondrial membrane 34" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 9.4e-09, P = 9.4e-09
 Identities = 42/115 (36%), Positives = 61/115 (53%)

Query:   388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMME-VL-STRASCYKEVGEYKKAVADCS 445
             G  N + GQY +A      A+ LL+  G      E VL S RA+CY + G     + DC+
Sbjct:    16 GNQNFRNGQYGEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDGNCTDCIKDCT 75

Query:   446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
               L     ++  L++RA  YE++EKY L   D +TVL+ID S   A   I+R+T+
Sbjct:    76 SALALVPFSIKPLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGINRITR 130

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0006626 "protein targeting to mitochondrion" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

UNIPROTKB|F1P4X4 TOMM34 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 37/118 (31%), Positives = 62/118 (52%)

Query:   385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMME--VLSTRASCYKEVGEYKKAVA 442
             +  G +  + GQY  A +  S A+ +LE +G+ A      +L+ RA+C    G  +  VA
Sbjct:    14 RRAGNEEFRRGQYGAAAELYSRALAVLEDAGEAAAEERSVLLANRAACQLRDGACRGCVA 73

Query:   443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
             DC   L      +  L++RA  YE++E + L   D +T L++D S + A   ++R+TK
Sbjct:    74 DCCSALSLTPFAIKPLLRRAAAYEALESFALAYVDYKTALQVDCSIQAAHDGVNRMTK 131

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|B6GVA2 int106 "Tetratricopeptide repeat protein" [Solanum lycopersicum (taxid:4081)]

 Score = 151 (58.2 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 34/115 (29%), Positives = 67/115 (58%)

Query:   393 KAGQYADAIKWLSWAVILLEKSGDMATMMEVLS----TRASCYKEVGEYKKAVADCSKVL 448
             K G Y +A   LS   + L+ + D+ +  E+ S     RA+C+ ++G++++ + +C+K L
Sbjct:   101 KDGLYEEA---LSKYELALQVAADIPSSTEIRSICHANRAACFTKLGKHEETIKECTKAL 157

Query:   449 EQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMVD 503
             E + T +  LV+RA  +E +E ++    D+  +L+++PS+  AR T+  L  + D
Sbjct:   158 ELNPTYIKALVRRAEAHEKLEHFEEAITDMTKILELEPSHDQARRTVILLKPLAD 212

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q15785 TOMM34 "Mitochondrial import receptor subunit TOM34" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 7.9e-08, P = 7.9e-08
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:   388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMME-VL-STRASCYKEVGEYKKAVADCS 445
             G ++ + GQYA+A      A+ +L+  G      E VL S RA+C+ + G  +  + DC+
Sbjct:    16 GNESFRNGQYAEASALYGRALRVLQAQGSSDPEEESVLYSNRAACHLKDGNCRDCIKDCT 75

Query:   446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
               L     ++  L++RA  YE++EKY +   D +TVL+ID +   A   I+R+T+
Sbjct:    76 SALALVPFSIKPLLRRASAYEALEKYPMAYVDYKTVLQIDDNVTSAVEGINRMTR 130

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0016021 "integral to membrane" evidence=TAS

TAIR|locus:2118776 TPR1 "tetratricopeptide repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 9.6e-08, P = 9.6e-08
 Identities = 31/105 (29%), Positives = 61/105 (58%)

Query:   395 GQYADAIKWLSWAVILLEKSGDMATMMEVLS-TRASCYKEVGEYKKAVADCSKVLEQDDT 453
             G Y +A+   ++A+ L+++  +   +  +    R  C+ ++G+ ++ + +C+K LE + T
Sbjct:   119 GLYEEALSKYAFALELVQELPESIELRSICYLNRGVCFLKLGKCEETIKECTKALELNPT 178

Query:   454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498
                 LV+RA  +E +E ++    DL+ +L++DPSN  AR  I RL
Sbjct:   179 YNKALVRRAEAHEKLEHFEDAVTDLKKILELDPSNDQARKGIRRL 223

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0051879 "Hsp90 protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033047001 SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (452 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	503
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-16
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-12
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-10
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-08
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-05
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-04
pfam13371	73	pfam13371, TPR_9, Tetratricopeptide repeat	8e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.001
smart01043	145	smart01043, BTAD, Bacterial transcriptional activa	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMA-TMMEVLSTRASCYKEVGEYKKAV 441
           A  N G    K G Y +A++         EK+ ++     +     A+ Y ++G+Y++A+
Sbjct: 2   ALLNLGNLYYKLGDYDEALE-------YYEKALELDPDNADAYYNLAAAYYKLGKYEEAL 54

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487
            D  K LE D  N        L Y  + KY+   E     L++DP+
Sbjct: 55  EDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 66.4 bits (160), Expect = 4e-12
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKA 440
             A    G   +  G+Y +A++ L  A+ L           E L      Y ++G+Y++A
Sbjct: 167 AEALLALGALLEALGRYEEALELLEKALKLNPD-----DDAEALLNLGLLYLKLGKYEEA 221

Query: 441 VADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487
           +    K LE D  N   L   ALL   + +Y+   E L   L++DP 
Sbjct: 222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 22/72 (30%), Positives = 32/72 (44%)

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481
           E L    + Y ++G+Y +A+    K LE D  N       A  Y  + KY+   ED    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 482 LKIDPSNRIARS 493
           L++DP N  A  
Sbjct: 61  LELDPDNAKAYY 72

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESM-EKYKLGAEDLRT 480
           E L    +   ++G+Y +A+    K LE D  N       AL Y  + + Y+   EDL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 481 VLKIDP 486
            L++DP
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 56.8 bits (135), Expect = 6e-09
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD 451
            + G Y +A++    A+ L  +  ++A   E L    +  + +G Y++A+    K L+ +
Sbjct: 141 YELGDYEEALELYEKALELDPELNELA---EALLALGALLEALGRYEEALELLEKALKLN 197

Query: 452 -DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
            D +   L+   LLY  + KY+   E     L++DP N
Sbjct: 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE-YKKAV 441
           A KN G    K G Y +AI+    A+ L   +       E     A  Y ++G+ Y++A+
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNA------EAYYNLALAYLKLGKDYEEAL 58

Query: 442 ADCSKVLEQD 451
            D  K LE D
Sbjct: 59  EDLEKALELD 68

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 383 AAKNKGVDNQKAGQ--YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKA 440
           AAK K   N+      +  AIK  S A+                S RA+C+  +G+++K 
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-------VYYSNRAACHNALGDWEKV 179

Query: 441 VADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485
           V D +  LE D      L +RA  Y+ + KY     DL     ID
Sbjct: 180 VEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIID 224

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-DMATMMEVLSTRASCYKEVGEYK 438
             AA  N  +  ++ G Y +A++ L  A+ L  + G D       L+  A  Y  +G+Y 
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63

Query: 439 KAVADCSKVLE 449
           +A+    K L 
Sbjct: 64  EALEYLEKALA 74

Length = 78

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454
           E L    + Y ++G+Y +A+    K LE D  N
Sbjct: 2   EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454
           + L    + Y ++G+Y +A+    K LE +  N
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498
           R LLY  +  ++    DL   L++ P    A     +L
Sbjct: 35  RGLLYAQLGCFQAALADLEYFLELCPDAPDAERIREQL 72

Length = 73

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQ------DDTNV-SVLVQRALLYESMEKYK 472
           +   L+  A   + +G+Y +A+    K LE       D       L   A LY ++  Y 
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63

Query: 473 LGAEDLRTVLKIDPS 487
              E L   L +  +
Sbjct: 64  EALEYLEKALALREA 78

Length = 78

>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLY------ESMEKY 471
           +E L   A     +G +++A+A   ++L  D        +L++   LY      E++  Y
Sbjct: 61  LEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMR--ALYRAGRRAEALRAY 118

Query: 472 KLGAEDLRTVLKIDPSNRIAR 492
           +     L   L ++P   +  
Sbjct: 119 RRLRRLLADELGVEPGPELRA 139

Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	503
KOG0553	304	consensus TPR repeat-containing protein [General f	99.77
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.65
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.64
PRK15359	144	type III secretion system chaperone protein SscB;	99.59
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.58
KOG4234	271	consensus TPR repeat-containing protein [General f	99.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.53
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.44
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.43
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.43
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.42
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.38
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.37
PRK11189	296	lipoprotein NlpI; Provisional	99.36
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.36
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.33
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.29
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.26
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.25
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.22
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.21
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.21
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.19
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.18
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.18
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.16
PRK11189	296	lipoprotein NlpI; Provisional	99.15
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.13
PRK12370	553	invasion protein regulator; Provisional	99.13
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.12
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.12
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.08
PRK12370	553	invasion protein regulator; Provisional	99.07
KOG1126	638	consensus DNA-binding cell division cycle control	99.05
KOG1125	579	consensus TPR repeat-containing protein [General f	99.05
PRK10803	263	tol-pal system protein YbgF; Provisional	99.04
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.03
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.03
KOG1126	638	consensus DNA-binding cell division cycle control	99.02
PRK15359	144	type III secretion system chaperone protein SscB;	99.01
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.01
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.99
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.99
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.97
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.97
PRK15331	165	chaperone protein SicA; Provisional	98.97
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.95
PF13512	142	TPR_18: Tetratricopeptide repeat	98.94
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.94
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.93
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.91
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.89
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.88
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.88
PF13371	73	TPR_9: Tetratricopeptide repeat	98.86
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.84
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.84
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.84
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.83
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.82
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.8
PLN02789	320	farnesyltranstransferase	98.77
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.76
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.76
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.72
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.68
PF12688	120	TPR_5: Tetratrico peptide repeat	98.67
KOG4555	175	consensus TPR repeat-containing protein [Function	98.67
PLN02789	320	farnesyltranstransferase	98.65
KOG2003	840	consensus TPR repeat-containing protein [General f	98.64
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.62
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.62
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.61
PF13371	73	TPR_9: Tetratricopeptide repeat	98.6
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.59
PRK14574	822	hmsH outer membrane protein; Provisional	98.58
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.57
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.57
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.53
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.51
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.5
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.5
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.49
KOG2076	895	consensus RNA polymerase III transcription factor	98.48
KOG0553	304	consensus TPR repeat-containing protein [General f	98.48
PRK14574	822	hmsH outer membrane protein; Provisional	98.48
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.47
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.46
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.46
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.43
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.43
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.43
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.42
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.38
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.37
KOG2076	895	consensus RNA polymerase III transcription factor	98.36
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.36
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.34
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.33
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.3
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.28
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.28
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.26
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.25
KOG1125	579	consensus TPR repeat-containing protein [General f	98.2
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.2
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.19
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.18
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.18
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.17
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.15
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.14
KOG2003	840	consensus TPR repeat-containing protein [General f	98.13
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.12
KOG1129	478	consensus TPR repeat-containing protein [General f	98.11
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.09
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.09
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.07
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.07
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.06
KOG1129	478	consensus TPR repeat-containing protein [General f	98.06
PRK11906	458	transcriptional regulator; Provisional	98.06
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.04
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.03
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.03
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.02
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.01
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.0
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.99
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.99
PRK11906	458	transcriptional regulator; Provisional	97.99
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.97
PRK10803	263	tol-pal system protein YbgF; Provisional	97.91
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.88
KOG1310	758	consensus WD40 repeat protein [General function pr	97.87
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.87
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.84
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.82
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.8
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.8
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.8
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.79
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.74
PF12688	120	TPR_5: Tetratrico peptide repeat	97.73
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.72
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.71
KOG4234	271	consensus TPR repeat-containing protein [General f	97.7
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.7
PF13428	44	TPR_14: Tetratricopeptide repeat	97.7
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.68
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.67
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.64
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.63
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.62
PF13428	44	TPR_14: Tetratricopeptide repeat	97.59
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.58
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.58
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.55
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.53
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.53
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.5
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.49
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.47
PF13431	34	TPR_17: Tetratricopeptide repeat	97.47
PRK10941	269	hypothetical protein; Provisional	97.43
PRK04841	903	transcriptional regulator MalT; Provisional	97.42
PRK15331	165	chaperone protein SicA; Provisional	97.41
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.39
PF13512	142	TPR_18: Tetratricopeptide repeat	97.38
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.37
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.36
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.32
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.32
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.3
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.28
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.27
KOG4555	175	consensus TPR repeat-containing protein [Function	97.27
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.26
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.25
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.22
PRK04841	903	transcriptional regulator MalT; Provisional	97.18
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.15
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.12
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.09
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.08
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.07
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.0
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.98
KOG2471	696	consensus TPR repeat-containing protein [General f	96.98
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.95
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.91
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.9
PF13431	34	TPR_17: Tetratricopeptide repeat	96.87
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.79
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.76
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.69
PLN03218	1060	maturation of RBCL 1; Provisional	96.69
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.68
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.67
KOG1586	288	consensus Protein required for fusion of vesicles	96.63
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.58
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.57
PLN03218	1060	maturation of RBCL 1; Provisional	96.56
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.53
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.53
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.51
KOG3364	149	consensus Membrane protein involved in organellar	96.46
KOG1585	308	consensus Protein required for fusion of vesicles	96.39
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.39
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.35
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.34
KOG1586	288	consensus Protein required for fusion of vesicles	96.28
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.26
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.25
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.23
PLN03077	857	Protein ECB2; Provisional	96.23
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.21
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.17
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.16
PRK10941	269	hypothetical protein; Provisional	96.14
PLN03077	857	Protein ECB2; Provisional	96.08
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.06
KOG1585	308	consensus Protein required for fusion of vesicles	96.04
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.03
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.96
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.94
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.86
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.83
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.8
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.75
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.68
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.68
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.64
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.61
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.6
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.6
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.59
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.54
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.43
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.27
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.2
COG2912	269	Uncharacterized conserved protein [Function unknow	95.17
KOG2471	696	consensus TPR repeat-containing protein [General f	95.09
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.09
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.08
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.06
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.04
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.8
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.78
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.77
KOG3364	149	consensus Membrane protein involved in organellar	94.75
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.61
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.56
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.56
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.51
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	94.5
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.44
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.36
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.28
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.15
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.95
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.91
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.82
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.78
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.71
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.43
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.21
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.2
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.2
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.99
KOG1915	677	consensus Cell cycle control protein (crooked neck	92.99
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.9
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	92.9
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.81
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.74
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.73
KOG1915	677	consensus Cell cycle control protein (crooked neck	92.58
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.46
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.3
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	92.12
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.91
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.9
PHA02537	230	M terminase endonuclease subunit; Provisional	91.4
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.39
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.24
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.16
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.02
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.01
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	90.24
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.23
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.17
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	89.91
COG3898	531	Uncharacterized membrane-bound protein [Function u	89.91
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.85
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	89.84
COG2912	269	Uncharacterized conserved protein [Function unknow	89.55
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	89.2
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	88.93
KOG2047	835	consensus mRNA splicing factor [RNA processing and	88.8
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.52
COG5191	435	Uncharacterized conserved protein, contains HAT (H	88.34
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.11
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	87.74
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.66
KOG2041	1189	consensus WD40 repeat protein [General function pr	87.51
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.4
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.36
KOG1463	411	consensus 26S proteasome regulatory complex, subun	87.35
KOG2300	629	consensus Uncharacterized conserved protein [Funct	87.27
KOG4014	248	consensus Uncharacterized conserved protein (conta	87.05
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.72
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	86.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.58
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	86.56
COG5159	421	RPN6 26S proteasome regulatory complex component [	86.45
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.4
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	86.23
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	86.11
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.1
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	86.1
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.05
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	85.96
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	84.93
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	84.91
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	84.76
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	84.66
TIGR02710	380	CRISPR-associated protein, TIGR02710 family. Membe	84.22
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	83.16
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.97
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.58
COG3947	361	Response regulator containing CheY-like receiver a	82.42
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	82.33
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.27
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.9
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.8
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	81.8
KOG1310	758	consensus WD40 repeat protein [General function pr	81.79
KOG1463	411	consensus 26S proteasome regulatory complex, subun	81.54
COG3118	304	Thioredoxin domain-containing protein [Posttransla	81.4
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	81.12
PF04212	69	MIT: MIT (microtubule interacting and transport) d	80.87
COG4941	415	Predicted RNA polymerase sigma factor containing a	80.35
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	80.08

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=2.2e-18  Score=173.87  Aligned_cols=120  Identities=26%  Similarity=0.381  Sum_probs=114.5

Q ss_pred             CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717          377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k  456 (503)
                      ....++.++..|+.+++.++|.+|+..|++||+|      +|.++..|+|||.+|.++|+|+.|+++|+.||.+||.+.+
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk  150 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK  150 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence            4457889999999999999999999999999999      6677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +|.|+|.+|+.+|+|++|++.|+++|+|||+|...+..|..+++.+
T Consensus       151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  151 AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1e-15  Score=163.57  Aligned_cols=116  Identities=27%  Similarity=0.446  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+...+..|+++|+.+||.+|++.|++||+.      +|+++.+|+|||.||++++++.+|+++|++||+++|.+.++|+
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~  430 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL  430 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence            4777888999999999999999999999987      6788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      |.|.|+..+++|++|++.|++++++||.+.++...+++|.++
T Consensus       431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.6e-15  Score=158.28  Aligned_cols=124  Identities=31%  Similarity=0.481  Sum_probs=111.9

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD---------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d---------dpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      ..+...+..|+.+|+.++|..|+..|++|+..+.....         ......++.|++.||+++++|.+|++.|+++|.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            35777889999999999999999999999988763211         123456799999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          450 QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       450 LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ++|++.+++||+|.||..+++|+.|+.+|+++++++|.|..++..|..|++.+
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.59  E-value=3e-14  Score=129.36  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      .+..+|.+++..|+|++|+++|++++.+      +|.+..+|.++|.++.++|++++|+..|+++++++|+++.+++++|
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            3667899999999999999999999988      6778899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      .+|..+|++++|++.|+++++++|++.+....+..++.++
T Consensus       100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888888777665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.58  E-value=3.6e-14  Score=146.85  Aligned_cols=115  Identities=18%  Similarity=0.272  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR  461 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl  461 (503)
                      ..++..|..++..++|++|+++|++||++      +|.+..+|.+||.||++++++++|+.+|+++|.++|.+..+|+++
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~l   76 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK   76 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            45788899999999999999999999998      567789999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       462 A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      |.+|+.+|+|++|+++|+++++++|++..+...+..|...+
T Consensus        77 g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         77 GTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987655

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.57  E-value=1.5e-14  Score=140.37  Aligned_cols=123  Identities=31%  Similarity=0.418  Sum_probs=114.5

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+..++..|+.+|+.|+|.+|...|..||+++|... ......+|.|||.|+++++..+.|+.+|.++|+|.|.+.+|+
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            4577899999999999999999999999999988755 356788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      .|+|.+|..+.+|++|+++|.+++.++|...+++..+++|..++
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            99999999999999999999999999999999999999886554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.53  E-value=2.5e-13  Score=118.44  Aligned_cols=117  Identities=14%  Similarity=0.108  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|..+++.+++++|+++|++++++      .+.+..++.+++.|+++++++++|+.+++++++++|++...++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   89 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF   89 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            3567889999999999999999999999988      5567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      .+|.+|..+|++++|+..|+++++++|++........++.+.+
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        90 HAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888877777665

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=3.8e-13  Score=144.07  Aligned_cols=113  Identities=21%  Similarity=0.316  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      +..++.+|+.+|..|||+.|+.+|++||.|      +|....+|+||+.||..+++|++|+++..+++++.|+|+++|.+
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r   75 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIML------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSR   75 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHcc------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHH
Confidence            456788999999999999999999999999      55678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      +|.++..+|+|++|+..|.++|+++|.|......|.++.
T Consensus        76 ~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   76 KGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999988888765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.43  E-value=3.4e-12  Score=119.46  Aligned_cols=116  Identities=12%  Similarity=0.083  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ..+.++.+|..++..|++++|++.|+.++.+      ++.....|.++|.|+..+|+|++|+..|.+++.++|+++.+++
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            5778999999999999999999999999999      7788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +.|.||+.+|+.++|++.|+.++.+--++++-.....+++.+
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~  149 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKM  149 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence            999999999999999999999999985554444444444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=5.8e-13  Score=141.73  Aligned_cols=122  Identities=29%  Similarity=0.395  Sum_probs=101.8

Q ss_pred             hCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          370 EGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       370 EaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      .++......+.+..++++|+.+|+.++|++||++|++||+++|      +....|.||+.||..+|++++.+++|.++|+
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p------~epiFYsNraAcY~~lgd~~~Vied~TkALE  177 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP------DEPIFYSNRAACYESLGDWEKVIEDCTKALE  177 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC------CCchhhhhHHHHHHHHhhHHHHHHHHHHHhh
Confidence            3334444456899999999999999999999999999999944      4468999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 010717          450 QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP--SNRIARSTIHRL  498 (503)
Q Consensus       450 LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP--en~eAk~~La~L  498 (503)
                      ++|++.++++||+.++..+|++++|+.++. ++-|..  +|..+...+.++
T Consensus       178 l~P~Y~KAl~RRA~A~E~lg~~~eal~D~t-v~ci~~~F~n~s~~~~~eR~  227 (606)
T KOG0547|consen  178 LNPDYVKALLRRASAHEQLGKFDEALFDVT-VLCILEGFQNASIEPMAERV  227 (606)
T ss_pred             cCcHHHHHHHHHHHHHHhhccHHHHHHhhh-HHHHhhhcccchhHHHHHHH
Confidence            999999999999999999999999999986 444433  344444444443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.42  E-value=3.2e-13  Score=139.19  Aligned_cols=116  Identities=23%  Similarity=0.326  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ...++.+|+.||++|+|++||++|.++|.+      +|..+..+.||+.+|+++++|..|..+|+.|+.|+..+.++|-|
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSR  170 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSR  170 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhcc------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence            345789999999999999999999999998      66778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ++.+-..||..++|.++++.+|+|.|++.+.++.++++..++
T Consensus       171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~  212 (536)
T KOG4648|consen  171 RMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR  212 (536)
T ss_pred             HHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence            999999999999999999999999999999999888876543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.38  E-value=8.7e-12  Score=119.43  Aligned_cols=113  Identities=16%  Similarity=0.099  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCY-KEVGE--YKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcy-lrLGd--yeeALedaekALkLdPd~~k  456 (503)
                      ..+.|..+|..|...+++++|++.|++|+++      .|++..++.++|.|+ ...|+  +++|++.++++++++|++..
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~  145 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQL------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT  145 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence            5889999999999999999999999999999      667889999999985 67787  59999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +++.+|.+++.+|+|++|+.+|+++++++|.+..-...++.+
T Consensus       146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i  187 (198)
T PRK10370        146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESI  187 (198)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            999999999999999999999999999999875544444444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.37  E-value=1.8e-11  Score=102.75  Aligned_cols=114  Identities=18%  Similarity=0.182  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSV  457 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kA  457 (503)
                      +..++.+|..+++.++|++|++.|.+++...+   +.+....++..++.++++.+++++|+..|++++.++|+.   ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   78 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA   78 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence            45788999999999999999999999997632   233446789999999999999999999999999998875   678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      ++.+|.+|..++++++|+..|+++++..|++..+...+.+
T Consensus        79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  118 (119)
T TIGR02795        79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR  118 (119)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence            9999999999999999999999999999999887776554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.36  E-value=2.4e-11  Score=122.29  Aligned_cols=108  Identities=21%  Similarity=0.220  Sum_probs=102.1

Q ss_pred             CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717          377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k  456 (503)
                      +...+..++.+|.++...|++.+|+..|++|+++      +|+...+|.++|.++..+|++++|++.|+++++++|++..
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~  133 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQALAL------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  133 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            3446888999999999999999999999999998      6677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      +++++|.+|+..|++++|++.|+++++++|++..
T Consensus       134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999863

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3.8e-12  Score=130.67  Aligned_cols=128  Identities=20%  Similarity=0.251  Sum_probs=111.0

Q ss_pred             cccHHHhCCCCC----CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHH
Q 010717          364 GTTTELEGLPPP----PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK  439 (503)
Q Consensus       364 aae~eLEaL~~~----~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyee  439 (503)
                      .....++.+...    .+.+.|.-++..|+.||+.++|..|++.|++.|..  +.++....+.+|.|||.|.+.+|+|..
T Consensus        60 ~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs  137 (390)
T KOG0551|consen   60 PDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRS  137 (390)
T ss_pred             ccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHH
Confidence            344455554433    34468889999999999999999999999999987  677666789999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          440 AVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       440 ALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                      ||.+|.+++.++|.+.+++||-|.|++.|+++++|+.++++.++++-+...+..
T Consensus       138 ~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~  191 (390)
T KOG0551|consen  138 ALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE  191 (390)
T ss_pred             HHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999988866555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=3.3e-12  Score=133.94  Aligned_cols=120  Identities=22%  Similarity=0.333  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....++..|+.+|+.|+|.+|.++|++||.++|.+  ....+.+|.||+.+..++|+..+||.+|+.+++||+..+++++
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall  325 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL  325 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc--cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence            45567889999999999999999999999997764  3457899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ++|.||+.+++|++|+++|++++++.-. .++++.|++++..|
T Consensus       326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL  367 (486)
T KOG0550|consen  326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL  367 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH
Confidence            9999999999999999999999999877 77777777776543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.29  E-value=4.9e-11  Score=90.84  Aligned_cols=99  Identities=28%  Similarity=0.414  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      +++.+|..++..+++++|+++|++++++      .+....++..++.|+...+++++|++.+++++++.|....+++.++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   75 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG   75 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence            4778999999999999999999999987      3344578999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      .++...+++++|++.++++++++|.
T Consensus        76 ~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          76 LAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999998874

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.26  E-value=8.9e-11  Score=128.48  Aligned_cols=114  Identities=20%  Similarity=0.218  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+.++..+|..++..|++++|++.|++++++      +|.....|.+++.+++.++++++|+.+|+++++++|+++.+++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  403 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY  403 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5667788888888888999999988888887      4556678888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .+|.+|+.+|++++|+++|+++++++|++..+...+..+.
T Consensus       404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            8888888888888888888888888888877666655543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.25  E-value=2.3e-10  Score=105.87  Aligned_cols=112  Identities=22%  Similarity=0.277  Sum_probs=99.3

Q ss_pred             CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717          375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN  454 (503)
Q Consensus       375 ~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~  454 (503)
                      ......+..++.+|..+...+++++|+++|++++++.+.   .+....++.++|.|+.++|++++|++.+++++.++|.+
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            344457888999999999999999999999999987432   22346789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 010717          455 VSVLVQRALLYESMEK--------------YKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       455 ~kAlyrlA~Ay~~LGd--------------yeeAle~LqkALkLDPen~  489 (503)
                      ..+++.+|.+|..+++              +++|+++++++++++|++-
T Consensus       106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            9999999999999988              7889999999999999883

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.24  E-value=1e-10  Score=128.09  Aligned_cols=115  Identities=16%  Similarity=0.041  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|.+++..++|++|++.|++++++      +|.+..+|+++|.+++.+|++++|+.+|+++++++|++..+++
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~  437 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKL------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI  437 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence            4678889999999999999999999999988      5566789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus       438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~  478 (615)
T TIGR00990       438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL  478 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999999999999999999999887777766543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.22  E-value=4.2e-11  Score=93.99  Aligned_cols=66  Identities=27%  Similarity=0.454  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESME-KYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG-dyeeAle~LqkALkLDP  486 (503)
                      +.+|.++|.+++++++|++|+.+|+++|+++|+++.+++++|.+|+.++ ++++|+++|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5678888888888888888888888888888888888888888888888 68888888888888887

...

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.21  E-value=1.3e-11  Score=131.43  Aligned_cols=117  Identities=24%  Similarity=0.278  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+++.+++.++|+.|+.+|.+||++      ++..+.++.+|+..+++.++|..|+.|+.++|+++|...++||
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~   76 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL------DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYV   76 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhc------CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheee
Confidence            3567888999999999999999999999999      6777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ++|.+++.++++.+|+..|++...+.|+++.+++.+.+|+.+.
T Consensus        77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v  119 (476)
T KOG0376|consen   77 RRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV  119 (476)
T ss_pred             eccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.21  E-value=7e-11  Score=128.78  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .++++.++|+++...+.+++|+.+|.+|+++      .|+.+.+++|++.+|.++|++++|+..|+++|+++|..++++.
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~v------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~  426 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALEV------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS  426 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHhh------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence            4566666666666666666666666666666      3455566666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ++|..|..+|+...|+.+|.++++++|...+++..|..+.
T Consensus       427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~  466 (966)
T KOG4626|consen  427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY  466 (966)
T ss_pred             hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence            6666666666666666666666666665555555555443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.19  E-value=1e-10  Score=127.48  Aligned_cols=116  Identities=22%  Similarity=0.246  Sum_probs=73.4

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      .-++++.++|.+|-++|++++|+.+|++||.+      +|..+.+|.|+|..|.++|+...|+++|.+||.++|..++++
T Consensus       386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh  459 (966)
T KOG4626|consen  386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH  459 (966)
T ss_pred             hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence            34445556666666666666666666666666      455666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      -++|.+|...|+..+|+..|+++|+|+|+.+++.-.+..+.+
T Consensus       460 sNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  460 SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             hhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence            666666666666666666666666666666666555554433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.18  E-value=1.3e-09  Score=100.22  Aligned_cols=114  Identities=19%  Similarity=0.159  Sum_probs=97.0

Q ss_pred             CCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717          374 PPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT  453 (503)
Q Consensus       374 ~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd  453 (503)
                      ....+..+..+..+|..+...++|++|+.+|++|+.+.+.   ......+|.++|.++..+|++++|++.|++++.++|.
T Consensus        28 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         28 TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            4445557888999999999999999999999999988432   2335679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCHH
Q 010717          454 NVSVLVQRALLYE-------SMEKYK-------LGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       454 ~~kAlyrlA~Ay~-------~LGdye-------eAle~LqkALkLDPen~e  490 (503)
                      ....++.++.+|.       .+|+++       +|++.|++++.++|++..
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence            9999999999998       777766       677777788899997643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.18  E-value=9.8e-10  Score=99.51  Aligned_cols=113  Identities=19%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR  461 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl  461 (503)
                      ..+..+|..++..+++++|+++|+++++..    ..+.....+.+++.|+.+.|++++|++.++++++++|++..+++.+
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  175 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL  175 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence            344445555555555555555555555321    1123345566677777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       462 A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +.++..++++++|++.+++++++.|.+......+..+
T Consensus       176 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  212 (234)
T TIGR02521       176 AELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI  212 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            7777777777777777777777766665554444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.16  E-value=1.6e-09  Score=98.06  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD--DTNVSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd--Pd~~kA  457 (503)
                      ....+..+|..++..+++++|+++|++++++      .+....++.+++.+++..|++++|++.+++++...  +.....
T Consensus        64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  137 (234)
T TIGR02521        64 DYLAYLALALYYQQLGELEKAEDSFRRALTL------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS  137 (234)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHH
Confidence            4667778888888888888888888888877      33455688888888888888888888888888753  455678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++.+|.+|..++++++|++.|+++++++|++..+...+..+..
T Consensus       138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  180 (234)
T TIGR02521       138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY  180 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence            8888999999999999999999999998888777776666543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.15  E-value=9.3e-10  Score=110.81  Aligned_cols=116  Identities=17%  Similarity=0.118  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV----  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~----  455 (503)
                      .+.++..+|..+...++|++|++.|++|+++      +|....+|.++|.+++..|++++|+++|+++++++|+++    
T Consensus        97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~  170 (296)
T PRK11189         97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL  170 (296)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5789999999999999999999999999999      667788999999999999999999999998887766532    


Q ss_pred             ------------------------------------------------------------------HHHHHHHHHHHHcC
Q 010717          456 ------------------------------------------------------------------SVLVQRALLYESME  469 (503)
Q Consensus       456 ------------------------------------------------------------------kAlyrlA~Ay~~LG  469 (503)
                                                                                        ++|+++|.+|..+|
T Consensus       171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g  250 (296)
T PRK11189        171 WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG  250 (296)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence                                                                              24666788899999


Q ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhh
Q 010717          470 KYKLGAEDLRTVLKIDP-SNRIARSTIHRLTKM  501 (503)
Q Consensus       470 dyeeAle~LqkALkLDP-en~eAk~~La~Lqkl  501 (503)
                      ++++|+.+|+++++++| +..+.+..+.++.++
T Consensus       251 ~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        251 DLDEAAALFKLALANNVYNFVEHRYALLELALL  283 (296)
T ss_pred             CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            99999999999999996 777877777776654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.13  E-value=6.6e-10  Score=128.99  Aligned_cols=114  Identities=9%  Similarity=0.018  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ...+..+|.++.+.|++++|+++|++++++      +|+...++.++|.++..+|++++|++.|+++++++|+++.++++
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n  682 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ  682 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            567888999999999999999999999988      66778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +|.+|..+|++++|+++|+++++++|++..+.....++.+
T Consensus       683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence            9999999999999999999999999998777766665543

>PRK12370 invasion protein regulator; Provisional

Probab=99.13  E-value=9.3e-10  Score=119.84  Aligned_cols=114  Identities=12%  Similarity=-0.001  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+.++..+|.++...+++++|++.|++|+++      +|..+.+|+.+|.+++.+|++++|++.++++++++|.++.+++
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~  410 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANLL------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI  410 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence            4778889999999999999999999999999      6677889999999999999999999999999999999988888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKID-PSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLD-Pen~eAk~~La~Lq  499 (503)
                      .++.+++.++++++|++.++++++.. |+++.+...+..+.
T Consensus       411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l  451 (553)
T PRK12370        411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL  451 (553)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence            88888888999999999999999885 77777766666554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.12  E-value=3e-10  Score=89.15  Aligned_cols=67  Identities=27%  Similarity=0.382  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDD  452 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdP  452 (503)
                      .+..+..+|.+++..++|++|+++|++||++      +|.+..+|+++|.||.+++ ++++|+++++++|+++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4788999999999999999999999999999      6788999999999999999 79999999999999997

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.12  E-value=1.7e-09  Score=103.16  Aligned_cols=115  Identities=14%  Similarity=0.175  Sum_probs=100.9

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS--  456 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k--  456 (503)
                      ..+..++.+|..++..++|++|++.|++++.+.+   +.+....+++.+|.+|++++++++|+..|+++++++|++..  
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP---FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            3678899999999999999999999999998733   23445578999999999999999999999999999998765  


Q ss_pred             -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          457 -VLVQRALLYESM--------EKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       457 -AlyrlA~Ay~~L--------GdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                       +++.+|.++..+        +++++|++.|+++++.+|++..+...+.
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence             799999999987        8899999999999999999976655544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=6.4e-10  Score=111.05  Aligned_cols=122  Identities=22%  Similarity=0.303  Sum_probs=103.1

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-----cCCC-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK-----SGDM-------ATMMEVLSTRASCYKEVGEYKKAVADCSK  446 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk-----~~dd-------pd~A~aysNrAlcylrLGdyeeALedaek  446 (503)
                      +....+...|+.+|+.++|.+|+..|..||..+.+     .+.+       .....++.|++.|++..++|-++++.|..
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            34567889999999999999999999999865543     1212       23456799999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHh
Q 010717          447 VLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR-IARSTIHRLTK  500 (503)
Q Consensus       447 ALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~-eAk~~La~Lqk  500 (503)
                      +|..+|.+.+|||++|.++...=+.++|.++|+++|+++|.-. .+.++|+.++.
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~  310 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLEN  310 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999763 44555555543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.09  E-value=1.6e-09  Score=121.81  Aligned_cols=115  Identities=6%  Similarity=-0.051  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+++++.+|.+....|+|++|+.+|+.++++      .|+...++.+++.++.+++++++|+..+++++..+|++..+++
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~  158 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL  158 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence            4788999999999999999999999999999      7788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .+|.++..+|+|++|++.|+++++.+|++.++...+..+.+
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~  199 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT  199 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999998888877776654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.08  E-value=4.7e-10  Score=92.09  Aligned_cols=83  Identities=25%  Similarity=0.321  Sum_probs=72.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 010717          394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKL  473 (503)
Q Consensus       394 qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyee  473 (503)
                      +++|++|+.+|+++++..+.   ++ +...+..+|.||+++|+|++|++.+++ +++++.+...++.+|.||..+++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~---~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e   76 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT---NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE   76 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG---TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred             CccHHHHHHHHHHHHHHCCC---Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence            68999999999999998553   12 566788899999999999999999999 88889889999999999999999999


Q ss_pred             HHHHHHHH
Q 010717          474 GAEDLRTV  481 (503)
Q Consensus       474 Ale~LqkA  481 (503)
                      |++.|+++
T Consensus        77 Ai~~l~~~   84 (84)
T PF12895_consen   77 AIKALEKA   84 (84)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99999875

>PRK12370 invasion protein regulator; Provisional

Probab=99.07  E-value=1.5e-09  Score=118.20  Aligned_cols=107  Identities=11%  Similarity=-0.062  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717          380 TGAAAKNKGVDNQK---------AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ  450 (503)
Q Consensus       380 ~A~alk~lGn~~fk---------qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL  450 (503)
                      .+..+..+|.++..         .+++++|++.+++|+++      +|.+..+|..+|.++..+|++++|++.|++++++
T Consensus       294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  367 (553)
T PRK12370        294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL  367 (553)
T ss_pred             cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            46677777776653         34589999999999999      6778899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          451 DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       451 dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      +|+++.+++.+|.+|..+|++++|++.|+++++++|.+..+.
T Consensus       368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~  409 (553)
T PRK12370        368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG  409 (553)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence            999999999999999999999999999999999999986553

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=1.9e-10  Score=125.98  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ..+.|..+|++|--++|++.||++|++||.+      +|.++.+|..+|.-+....+||+|..+|++||.++|++-.|||
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY  493 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY  493 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence            6778999999999999999999999999988      4555666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      -+|.+|++.++++.|.-.|++|++++|.+..+.-.+..+
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~  532 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRI  532 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHH
Confidence            666666666666666666666666666665554444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=2.3e-10  Score=123.79  Aligned_cols=114  Identities=14%  Similarity=0.168  Sum_probs=103.6

Q ss_pred             HHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717          368 ELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV  447 (503)
Q Consensus       368 eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA  447 (503)
                      .+++....+....+++..-+|..|+-.++|+.|+++|+.||..      .|.+..+|+.+|..+..-.+.++||+.|++|
T Consensus       417 fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA  490 (579)
T KOG1125|consen  417 FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------KPNDYLLWNRLGATLANGNRSEEAISAYNRA  490 (579)
T ss_pred             HHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc------CCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence            3444444444446788889999999999999999999999987      7888999999999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          448 LEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       448 LkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      |+|.|..++++|++|.+|+.+|.|+||+.+|.+||.+.+.
T Consensus       491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999886

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.04  E-value=6.7e-09  Score=104.34  Aligned_cols=117  Identities=13%  Similarity=0.056  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 010717          381 GAAAKNKGVDN-QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VS  456 (503)
Q Consensus       381 A~alk~lGn~~-fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~k  456 (503)
                      ....+..+..+ ++.++|++|++.|++.++..|+   .+....+++.+|.+|+.+++|++|+..|+++++..|++   ..
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d  218 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD  218 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence            34566777765 6789999999999999987443   44446789999999999999999999999999998874   77


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +++.+|.+|..++++++|++.|+++++..|+...+.....+|..
T Consensus       219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~~  262 (263)
T PRK10803        219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLNA  262 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHhc
Confidence            99999999999999999999999999999999988887777643

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.03  E-value=2.1e-09  Score=121.40  Aligned_cols=144  Identities=12%  Similarity=0.128  Sum_probs=118.2

Q ss_pred             cccccc-ccccCCCCCCCcccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010717          347 EVDDWG-YSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLS  425 (503)
Q Consensus       347 ev~DW~-Vd~f~ag~d~eaae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~ays  425 (503)
                      .+.||. |-.+. +...++.....+.....+.  .+..+..+|..+.+.+++++|+++|++++++      +|....++.
T Consensus        17 ~~~d~~~ia~~~-g~~~~A~~~~~~~~~~~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~   87 (765)
T PRK10049         17 QIADWLQIALWA-GQDAEVITVYNRYRVHMQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSL------EPQNDDYQR   87 (765)
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Confidence            488994 44444 3233333333333222232  4667899999999999999999999999998      566678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          426 TRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       426 NrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .++.++++.+++++|+..++++++++|++.. ++.+|.+|...+++++|+..|+++++++|++.++...+..+..
T Consensus        88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049         88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999 9999999999999999999999999999999998877766543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=6.9e-10  Score=110.28  Aligned_cols=116  Identities=17%  Similarity=0.209  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++..|+.+|..++|..||..|.+||.+      .|.-+..|.|+++||+++.+++.+.++|.++++++|+.++++|
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~   82 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY   82 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence            5677899999999999999999999999998      5667789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPS-----NRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPe-----n~eAk~~La~Lqkl  501 (503)
                      -+|.+++..+.|++|+..|++++.+.-+     -..+..+|..++++
T Consensus        83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            9999999999999999999999766422     24556666665543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.02  E-value=1e-09  Score=120.21  Aligned_cols=117  Identities=16%  Similarity=0.096  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      +..+|+-+|.+|+++++|+.|.-.|++|+++      .|....+.+.++..+.++|+.++||..+++|+.++|.++-..|
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcC------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence            4667777888888888888888888888877      5566677777788888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      .++.+|+.+++|++|+..|+++.++.|++..+...+.++.+.+
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~  604 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL  604 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888777777777766543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.01  E-value=3.6e-09  Score=96.19  Aligned_cols=92  Identities=15%  Similarity=0.086  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717          401 IKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRT  480 (503)
Q Consensus       401 Ik~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~Lqk  480 (503)
                      ..+|++|+++      +|.   .+.+++.++.++|++++|+.+|++++.++|.+..+++.+|.++..+|++++|++.|++
T Consensus        13 ~~~~~~al~~------~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~   83 (144)
T PRK15359         13 EDILKQLLSV------DPE---TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGH   83 (144)
T ss_pred             HHHHHHHHHc------CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4678899988      343   2667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHhh
Q 010717          481 VLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       481 ALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++++|++..+...+..+...
T Consensus        84 Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         84 ALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHhcCCCCcHHHHHHHHHHHH
Confidence            999999999998888876554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.01  E-value=5.5e-09  Score=100.19  Aligned_cols=101  Identities=12%  Similarity=0.040  Sum_probs=91.5

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCC--
Q 010717          394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY-ESMEK--  470 (503)
Q Consensus       394 qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay-~~LGd--  470 (503)
                      .++.++++..|+++++.      +|.+.+.|..+|.+|+.++++++|+..|+++++++|++..+++.+|.++ ...++  
T Consensus        52 ~~~~~~~i~~l~~~L~~------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~  125 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHM  125 (198)
T ss_pred             chhHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Confidence            56778899999999988      6778999999999999999999999999999999999999999999986 67787  


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          471 YKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       471 yeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +++|++.|+++++++|++..+...+..+..
T Consensus       126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~  155 (198)
T PRK10370        126 TPQTREMIDKALALDANEVTALMLLASDAF  155 (198)
T ss_pred             cHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            599999999999999999998888776543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.99  E-value=8.2e-09  Score=120.01  Aligned_cols=109  Identities=16%  Similarity=0.091  Sum_probs=95.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717          386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY  465 (503)
Q Consensus       386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay  465 (503)
                      .++..+++.|++++|+..|++|+++      +|+ ..+|.+++.++.++|++++|++.|+++++++|+++.+++++|.+|
T Consensus       581 ~La~~l~~~Gr~~eAl~~~~~AL~l------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL  653 (987)
T PRK09782        581 WLHAQRYIPGQPELALNDLTRSLNI------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL  653 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHh------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3444445558888888888888887      454 688999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          466 ESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       466 ~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ..+|++++|++.|+++++++|++.++...+..+...
T Consensus       654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998888777554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.99  E-value=2.6e-09  Score=110.77  Aligned_cols=115  Identities=24%  Similarity=0.274  Sum_probs=104.6

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..++.++.+|..++.+++|.+|+..|..|+++      +|....+++.|+.+|+.+|+-..|+.++.++|++.|+..-|.
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR  109 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR  109 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence            45778899999999999999999999999998      678889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTIHRLT  499 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~La~Lq  499 (503)
                      ..+|.+++++|++++|..+|+.+|+.+|.+   .+++..|..++
T Consensus       110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~  153 (504)
T KOG0624|consen  110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ  153 (504)
T ss_pred             HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence            999999999999999999999999999954   45555554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.98  E-value=5.9e-09  Score=116.11  Aligned_cols=107  Identities=12%  Similarity=0.134  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          380 TGAAAKNKGVDNQKAGQYAD----AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~e----AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~  455 (503)
                      ....+..+|..++..|++++    |++.|++++++      +|....++.+++.+++++|++++|+..++++++++|++.
T Consensus       245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~  318 (656)
T PRK15174        245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP  318 (656)
T ss_pred             CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            35566667777777777764    67777777766      445566777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      .+++.++.+|..+|++++|++.|+++++++|++....
T Consensus       319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~  355 (656)
T PRK15174        319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN  355 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence            7777777777777777777777777777777665433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.97  E-value=4.7e-09  Score=123.37  Aligned_cols=119  Identities=16%  Similarity=0.148  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChh--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMAT--------MMEVLSTRASCYKEVGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd--------~A~aysNrAlcylrLGdyeeALedaekALkLd  451 (503)
                      ...++..+|.++++.+++++|+++|++++++.+.......        ...++..++.++++.|++++|++.|+++++++
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4778999999999999999999999999988553321100        11233466889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          452 DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       452 Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      |++..+++.+|.+|..+|++++|+++|+++++++|++..+...+..+
T Consensus       382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l  428 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL  428 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999998877666554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.97  E-value=2.2e-09  Score=83.57  Aligned_cols=64  Identities=22%  Similarity=0.318  Sum_probs=56.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          426 TRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       426 NrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      .+|..+++.|+|++|++.|+++++.+|++..+++.+|.++..+|++++|++.|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5788899999999999999999999999999999999999999999999999999999999874

>PRK15331 chaperone protein SicA; Provisional

Probab=98.97  E-value=7.8e-09  Score=97.71  Aligned_cols=112  Identities=9%  Similarity=-0.019  Sum_probs=100.3

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ...+.++..|..+|.+|+|++|..+|+-...+      ++.+.+.+..+|.|+..+++|++|+..|..|..++++++...
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            36778899999999999999999999998887      556678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      |+.|.||+.+++.++|+.+|+.++. .|++.+++.....
T Consensus       109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~  146 (165)
T PRK15331        109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALV  146 (165)
T ss_pred             chHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHH
Confidence            9999999999999999999999998 5777665544333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.97  E-value=3.5e-09  Score=104.31  Aligned_cols=116  Identities=15%  Similarity=0.127  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+...|.++.+.|++++|+++|++|+++      .|++..++..++.+++..|+++++.+.++...+..|.++..+.
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALEL------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD  218 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH
Confidence            5677888999999999999999999999998      5566788888888999999999988888888888788888889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+|.+|..+|++++|+.+|+++++.+|+++.+...+..+...
T Consensus       219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ  260 (280)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred             HHHHHhcccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999988887654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.96  E-value=9.2e-09  Score=114.60  Aligned_cols=111  Identities=16%  Similarity=0.094  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCHHHHH
Q 010717          384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK----AVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyee----ALedaekALkLdPd~~kAly  459 (503)
                      +..++..+...+++++|++.|.+++++      .|.+..++.++|.+|+++|++++    |+..|+++++++|++..+++
T Consensus       215 ~~~l~~~l~~~g~~~eA~~~~~~al~~------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~  288 (656)
T PRK15174        215 AGLAVDTLCAVGKYQEAIQTGESALAR------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVT  288 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            345678889999999999999999987      56678899999999999999986    89999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus       289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~  329 (656)
T PRK15174        289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR  329 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999988887776654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.95  E-value=1.9e-08  Score=108.76  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=99.0

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+..+..+|..++..+++++|++.|++++++      +|....++..++.+++..+++++|++.++++++.+|.+..++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  196 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAI------DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL  196 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence            45677888999999999999999999999987      445567888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +.++.++..+|++++|++.|+++++++|.+..+...+..+
T Consensus       197 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  236 (899)
T TIGR02917       197 LLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATI  236 (899)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999887766555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.94  E-value=1.3e-08  Score=94.17  Aligned_cols=116  Identities=17%  Similarity=0.212  Sum_probs=101.4

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS--  456 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k--  456 (503)
                      ..+..++..|...++.++|.+|++.|+......|   -.+.-..+...++.+|++.++|++|+..+++-|+|+|.+++  
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd   84 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYP---FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD   84 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence            3577899999999999999999999998876533   34555678889999999999999999999999999998854  


Q ss_pred             -HHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          457 -VLVQRALLYESMEK---------------YKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       457 -AlyrlA~Ay~~LGd---------------yeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                       ++|.+|.+++.+.+               ..+|+..|+++++..|++..+.....+
T Consensus        85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R  141 (142)
T PF13512_consen   85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKR  141 (142)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence             89999999999987               999999999999999999877665543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.94  E-value=4.1e-09  Score=104.27  Aligned_cols=131  Identities=18%  Similarity=0.106  Sum_probs=102.5

Q ss_pred             CCcccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHH
Q 010717          362 DGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV  441 (503)
Q Consensus       362 ~eaae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeAL  441 (503)
                      ...++..+|.....++. ...++..++..|.+.|+.+.|-+.|++|+.+      +|...++++|.|.-++.+|+|++|.
T Consensus        51 ~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------~p~~GdVLNNYG~FLC~qg~~~eA~  123 (250)
T COG3063          51 YAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL------APNNGDVLNNYGAFLCAQGRPEEAM  123 (250)
T ss_pred             HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------CCCccchhhhhhHHHHhCCChHHHH
Confidence            33444445443333332 5777888888888999999999999999888      5556678888888888888999999


Q ss_pred             HHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          442 ADCSKVLEQ--DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       442 edaekALkL--dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      +.|++|+..  .+.....+-++|.|.++.|+.+.|.+.|+++|+++|+++.....+.++.
T Consensus       124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~  183 (250)
T COG3063         124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH  183 (250)
T ss_pred             HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence            999888864  2455778889999999999999999999999999999887777776654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.93  E-value=1.1e-08  Score=89.07  Aligned_cols=94  Identities=14%  Similarity=0.073  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717          402 KWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV  481 (503)
Q Consensus       402 k~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkA  481 (503)
                      +.|++++++      +|....++..++.+++..+++++|++.+++++.++|.+..+++++|.+|..++++++|++.|+++
T Consensus         4 ~~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552         4 ATLKDLLGL------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             hhHHHHHcC------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788877      55667889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHhh
Q 010717          482 LKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       482 LkLDPen~eAk~~La~Lqkl  501 (503)
                      ++++|++......+..+...
T Consensus        78 ~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        78 AALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HhcCCCChHHHHHHHHHHHH
Confidence            99999999888887776543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.91  E-value=1.3e-08  Score=114.45  Aligned_cols=104  Identities=11%  Similarity=-0.057  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ...++.+++.++.+++++++|+..+++++..      +|+.+.+++.+|.|+.++|+|++|++.|+++++.+|+..++++
T Consensus       119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~  192 (694)
T PRK15179        119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV  192 (694)
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence            6888999999999999999999999999988      7788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      .+|.+|+.+|+.++|...|++++++.-.-.
T Consensus       193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        193 GWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            999999999999999999999999865543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.91  E-value=1.1e-08  Score=101.30  Aligned_cols=133  Identities=17%  Similarity=0.132  Sum_probs=116.6

Q ss_pred             cccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 010717          364 GTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVAD  443 (503)
Q Consensus       364 aae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALed  443 (503)
                      +.+....++...+.  ..+++.+.|-.++.+|+|++|..+|++|++.    +.-+..+..|.|++.|.++.|+++.|.++
T Consensus        88 A~e~YrkAlsl~p~--~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~  161 (250)
T COG3063          88 ADESYRKALSLAPN--NGDVLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEY  161 (250)
T ss_pred             HHHHHHHHHhcCCC--ccchhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence            33444455555554  5889999999999999999999999999954    45566788999999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       444 aekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ++++|+++|+.+.+...++..++..++|..|...+++....-+...+......++.+.+
T Consensus       162 l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~  220 (250)
T COG3063         162 LKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRL  220 (250)
T ss_pred             HHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999888888888888887765

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.89  E-value=3.7e-08  Score=111.41  Aligned_cols=113  Identities=10%  Similarity=-0.044  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..++..+...+++++|++.|++++++      .|....++..++.++...|++++|++.++++++++|++..+++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~  431 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYN------APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEV  431 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence            3556778999999999999999999999988      5666889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      .+|.+++.++++++|++.++++++++|+++.++..-+..
T Consensus       432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999876655443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.89  E-value=3.4e-08  Score=106.84  Aligned_cols=114  Identities=18%  Similarity=0.092  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|..+.+.|++++|+++|++++++      .|.+..++.+++.++.+.++ .+|+..+++++++.|+++..+.
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~  841 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD  841 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence            3566777888888888888888888888876      45567788888888888888 7788888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .+|.+|..+|++++|++.|+++++++|.+.++...+..+..
T Consensus       842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  882 (899)
T TIGR02917       842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL  882 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            88999999999999999999999999988888777666543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.88  E-value=1.8e-08  Score=118.51  Aligned_cols=117  Identities=14%  Similarity=0.085  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCh------------------------------------hhHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMA------------------------------------TMMEV  423 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddp------------------------------------d~A~a  423 (503)
                      ...++..+|.+++.+|++++|+++|++++++.+......                                    .....
T Consensus       384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~  463 (1157)
T PRK11447        384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDR  463 (1157)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence            466788899999999999999999999998744221000                                    00112


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          424 LSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       424 ysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      +..++.++...|++++|++.|+++++++|+++.+++.+|.+|..+|++++|++.|+++++++|++.++...+.
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a  536 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG  536 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3446777788999999999999999999999999999999999999999999999999999999987765443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.88  E-value=5.1e-08  Score=93.05  Aligned_cols=118  Identities=14%  Similarity=0.077  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCC
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV--------GEYKKAVADCSKVLEQDD  452 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL--------GdyeeALedaekALkLdP  452 (503)
                      ..+++.+|..+++.+++++|++.|++++++.|+   .+....+++.++.|++++        +++++|++.++++++.+|
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence            457889999999999999999999999988543   334456788999999987        889999999999999999


Q ss_pred             CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHhh
Q 010717          453 TNVSVL-----------------VQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTIHRLTKM  501 (503)
Q Consensus       453 d~~kAl-----------------yrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~La~Lqkl  501 (503)
                      ++..++                 +.+|.+|+..|++++|+..|+++++..|++   .++...+.++...
T Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK  215 (235)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence            986432                 467889999999999999999999998875   4566666665543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.5e-08  Score=110.03  Aligned_cols=119  Identities=14%  Similarity=0.233  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd-pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .-.++.+|.++|..+.|.+|+.+|+++++.++...++ ..-..++.|+|.++.++++|++||.+++++|.+.|.++..|-
T Consensus       414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~a  493 (611)
T KOG1173|consen  414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHA  493 (611)
T ss_pred             chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHH
Confidence            5578889999999999999999999999776654322 224567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      -+|.+|..+|+++.|++.|.++|.++|++..+...|..+.
T Consensus       494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999988877777554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.86  E-value=1.3e-08  Score=80.52  Aligned_cols=71  Identities=25%  Similarity=0.369  Sum_probs=63.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          428 ASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       428 AlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      ..+|++.+++++|++.++++++++|+++.+++.+|.+|..+|++++|+++|++++++.|++..+......+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            46788999999999999999999999999999999999999999999999999999999988877766554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.85  E-value=8.2e-08  Score=91.92  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~k  456 (503)
                      .+..++..|..++..|+|.+|++.|++.+...|.   .+....+...++.++++.++|++|+..+++.++..|++   ..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence            5778999999999999999999999999987554   45667888999999999999999999999999999886   45


Q ss_pred             HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHhhh
Q 010717          457 VLVQRALLYESME-----------KYKLGAEDLRTVLKIDPSNR---IARSTIHRLTKMV  502 (503)
Q Consensus       457 AlyrlA~Ay~~LG-----------dyeeAle~LqkALkLDPen~---eAk~~La~LqklL  502 (503)
                      ++|.+|.+++.+.           ...+|+..|++.++..|+..   +++..+..|.+.+
T Consensus        81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l  140 (203)
T PF13525_consen   81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL  140 (203)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence            8999999987653           34589999999999999984   5555566665543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.85  E-value=7.1e-08  Score=97.81  Aligned_cols=107  Identities=20%  Similarity=0.065  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ...+..++..+.+.+++++|++.|+++++..+... ......++..++.++++.+++++|++.|+++++++|+...+++.
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  219 (389)
T PRK11788        141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL-RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASIL  219 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHH
Confidence            34455555555555555555555555555422110 01122334455555555555555555555555555555555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      ++.+|..+|++++|++.|+++++++|.+
T Consensus       220 la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        220 LGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            5555555555555555555555555543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.84  E-value=6.5e-08  Score=98.07  Aligned_cols=111  Identities=17%  Similarity=0.109  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----H
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV-----S  456 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~-----k  456 (503)
                      ..+..+|..+++.|++++|+++|++++++      .+....++..++.++.+.|++++|++.++++++..|...     .
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  181 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH  181 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            34555666666666666666666666654      233455666666666667777777777766666665432     2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      .++.++.++...+++++|++.|+++++++|++..+...+.++
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  223 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL  223 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence            344566666677777777777777777777666555555544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1.2e-08  Score=109.33  Aligned_cols=112  Identities=20%  Similarity=0.221  Sum_probs=98.7

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+.++...|..+|-.|++..|.+.+.++|+++      +....+|..|+.+|+.+.+-++-.++|++|..+||+++.+|
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY  397 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY  397 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh
Confidence            347788888999999999999999999999994      44456688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      |.||++++.+++|++|+++|++++.|+|++......+.
T Consensus       398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~  435 (606)
T KOG0547|consen  398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC  435 (606)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence            99999999999999999999999999999876655443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=3.5e-08  Score=100.42  Aligned_cols=111  Identities=22%  Similarity=0.128  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE---YKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd---yeeALedaekALkLdPd~~k  456 (503)
                      +++-|..+|.+|+..+++..|+..|.+|+++      .++..+++..++.+++...+   -.++...+++++++||.++.
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir  228 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRL------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR  228 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence            5888999999999999999999999999999      55667888888888877544   58899999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      +++.+|..++..++|++|+..|+..|++.|.+..-...+.
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie  268 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            9999999999999999999999999999998754433333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=4.9e-08  Score=104.25  Aligned_cols=117  Identities=14%  Similarity=0.057  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ...+|..+|.+|+..++...|++.|+.|+++      .|.+..+|+.+|..|.-++-..=|+-+|++|+++.|.+...|.
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~  436 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV  436 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH
Confidence            5678888999999999999999999999998      5677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      .+|.||.++.+.++|+.+|.+++.....+..+...|+.+.+.+
T Consensus       437 aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l  479 (559)
T KOG1155|consen  437 ALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL  479 (559)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            9999999999999999999999998887777777777766543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.82  E-value=8.2e-08  Score=96.18  Aligned_cols=114  Identities=13%  Similarity=0.136  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|...++.|+|.+|+..+.+|..+      .|.+.++|..+|.||.++|++++|...|.+++++.|..+.++-
T Consensus        99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n  172 (257)
T COG5010          99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN  172 (257)
T ss_pred             cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence            4556777999999999999999999999988      6778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ++|..|+..||+++|...++++...-+.+..+...|..+.
T Consensus       173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~  212 (257)
T COG5010         173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV  212 (257)
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            9999999999999999999999988888888887777653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.80  E-value=1.6e-07  Score=93.10  Aligned_cols=120  Identities=14%  Similarity=0.093  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~k  456 (503)
                      .+..++..|..++..|+|++|++.|++++...|   ..+....+...++.+|+++++|++|+..+++.++++|++   ..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            466788999999999999999999999998744   345556677899999999999999999999999999877   45


Q ss_pred             HHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHhhh
Q 010717          457 VLVQRALLYESMEK------------------YKLGAEDLRTVLKIDPSNR---IARSTIHRLTKMV  502 (503)
Q Consensus       457 AlyrlA~Ay~~LGd------------------yeeAle~LqkALkLDPen~---eAk~~La~LqklL  502 (503)
                      ++|.+|.+++.+++                  ..+|++.|++.++..|+..   +++..|..|+..+
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l  174 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL  174 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence            89999999766541                  3578999999999999984   4555555555443

>PLN02789 farnesyltranstransferase

Probab=98.77  E-value=1.6e-07  Score=96.96  Aligned_cols=113  Identities=12%  Similarity=0.059  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAG-QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEY--KKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqG-DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdy--eeALedaekALkLdPd~~k  456 (503)
                      ...++..++.++.+.+ ++++|+++++++++.      +|....+|..|+.++.++++.  ++++++++++|+++|++..
T Consensus        70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~  143 (320)
T PLN02789         70 NYTVWHFRRLCLEALDADLEEELDFAEDVAED------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH  143 (320)
T ss_pred             hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence            5778888999999988 689999999999988      566788999999999999874  7889999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +|+.++.++..+++|++|++++.++|++||.|..+......+
T Consensus       144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v  185 (320)
T PLN02789        144 AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV  185 (320)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence            999999999999999999999999999999997765555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.76  E-value=2.2e-08  Score=78.16  Aligned_cols=68  Identities=24%  Similarity=0.321  Sum_probs=57.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          431 YKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       431 ylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +++.|+|++|++.|++++..+|++..+++.++.||+..|++++|.+.|+++++.+|++..+...+.+|
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            35788899999999999999999999999999999999999999999999999999888777776654

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.76  E-value=2.6e-08  Score=77.51  Aligned_cols=65  Identities=22%  Similarity=0.170  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~  455 (503)
                      +.+|..+++.|+|++|++.|+++++.      .|....++..+|.|++++|++++|++.|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35799999999999999999999977      677899999999999999999999999999999999874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.76  E-value=5.5e-08  Score=78.18  Aligned_cols=72  Identities=25%  Similarity=0.395  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd-pd~A~aysNrAlcylrLGdyeeALedaekALkLd  451 (503)
                      .+.++.++|.+++..++|++|+++|++|+++....+++ +..+.++.++|.||..+|++++|++++++|+++.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            56788899999999999999999999999885555543 3458889999999999999999999999998763

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.72  E-value=2.7e-07  Score=93.07  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVL  458 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAl  458 (503)
                      ..+++.+..+++.|||.+|...|.+-|..   .++......+++-||.|++.+|+|++|...|..+++-.|++   ++++
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~---YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKK---YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            34899999999999999999999988865   44456667888889999999999999999999999988765   6789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +.+|.|+..+++.++||..|+++++..|+...++.....+++
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~~  260 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALKA  260 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence            999999999999999999999999999999888877776654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.69  E-value=2.2e-07  Score=83.88  Aligned_cols=98  Identities=16%  Similarity=0.112  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ..+.+.++..++..|+|++|++.|+++++..   ++......+...++.|++.+++|++|+..+++ +.-.+-.+.++..
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~  123 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL  123 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence            4567779999999999999999999999752   33344566788899999999999999999977 3333445668888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 010717          461 RALLYESMEKYKLGAEDLRTVL  482 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkAL  482 (503)
                      +|.+|...|++++|+..|+++|
T Consensus       124 ~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  124 LGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999999875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.68  E-value=2e-07  Score=70.75  Aligned_cols=76  Identities=28%  Similarity=0.387  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       423 aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      ++.+++.+++..+++++|+..+++++++.|.+..+++.++.+|...+++++|++.|++++++.|.+..+...+..+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            5788999999999999999999999999999999999999999999999999999999999999987666555544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.4e-07  Score=100.90  Aligned_cols=115  Identities=10%  Similarity=0.091  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR  461 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl  461 (503)
                      +...-+|+-|-.+++.+.|+.+|++|++|      +|....+|..+|.-|+++++-..|++.|++|++++|.+-++||-+
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL  404 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKL------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL  404 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhc------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence            34455677788889999999999999999      667889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       462 A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      |++|.-++-..=|+-+|++++++-|.+..+...|.+|...+
T Consensus       405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl  445 (559)
T KOG1155|consen  405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL  445 (559)
T ss_pred             hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.67  E-value=4e-07  Score=81.87  Aligned_cols=99  Identities=23%  Similarity=0.142  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT---NVSVL  458 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd---~~kAl  458 (503)
                      .+++..+..+-..|+.++|+.+|++|++..   ...+....++..++.++..+|++++|+..+++++...|+   +..+.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            367889999999999999999999999852   224556789999999999999999999999999999888   78888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALk  483 (503)
                      +.++.++..+|++++|++.+..++.
T Consensus        79 ~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   79 VFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8899999999999999999988875

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.67  E-value=3.5e-07  Score=84.62  Aligned_cols=101  Identities=21%  Similarity=0.310  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV----  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~----  455 (503)
                      ....+-.+|..+...++.+.|++.|.++|.++      |..+.+|+||+..+..+++.++|+.++++++++.-...    
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac  115 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLA------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC  115 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhc------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence            34456677888999999999999999999994      45679999999999999999999999999999974433    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      .+++.+|.+|..+|+-++|..+|+.+-++-.
T Consensus       116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            4788899999999999999999999887754

>PLN02789 farnesyltranstransferase

Probab=98.65  E-value=5.4e-07  Score=93.03  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=94.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717          387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDDTNVSVLVQRALLY  465 (503)
Q Consensus       387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdPd~~kAlyrlA~Ay  465 (503)
                      +-.++.+.+++++|++.+.++|++      .|...++|..|+.|+..++ ++++++..++++++.+|++..+|+.++.++
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            334466788999999999999999      6788999999999999998 689999999999999999999999999999


Q ss_pred             HHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          466 ESMEKY--KLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       466 ~~LGdy--eeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ..+++.  +++++.++++|+++|+|-.+......+..
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~  153 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLR  153 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            999874  78899999999999999777665554443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=7.8e-08  Score=102.61  Aligned_cols=116  Identities=24%  Similarity=0.165  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+.++.++|++.|..|||+.|.+.|++||.-      +....++++|+++.+..+|++++|+.+|-+.-.+--+++++++
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~  562 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLV  562 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3456677888899999999999999999954      5667889999999999999999999999888777778999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .++.+|..+.+..+|+++|..+..+-|.++.+...|.++..+
T Consensus       563 qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq  604 (840)
T KOG2003|consen  563 QIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ  604 (840)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999988764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.62  E-value=1e-07  Score=99.03  Aligned_cols=97  Identities=13%  Similarity=0.125  Sum_probs=83.7

Q ss_pred             cHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          366 TTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS  445 (503)
Q Consensus       366 e~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedae  445 (503)
                      ....+++...+.  .+.++..+|.++++.++|++|+..|++||++      +|....+|+++|.+|+.+|+|++|+.+|+
T Consensus        23 ~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~   94 (356)
T PLN03088         23 DLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKAYLRKGTACMKLEEYQTAKAALE   94 (356)
T ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            333344444444  4778999999999999999999999999999      56778999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCC
Q 010717          446 KVLEQDDTNVSVLVQRALLYESMEK  470 (503)
Q Consensus       446 kALkLdPd~~kAlyrlA~Ay~~LGd  470 (503)
                      ++++++|++..+++.++.|...+.+
T Consensus        95 ~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         95 KGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999888777744

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.62  E-value=2.2e-07  Score=85.38  Aligned_cols=109  Identities=13%  Similarity=0.038  Sum_probs=88.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHH
Q 010717          388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALL  464 (503)
Q Consensus       388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~A  464 (503)
                      .+.+|..++|..+...+...+..    ......+.+|++++.++..++++++|+..|++++.+.++.   ..+++++|.+
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~   81 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPT----TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI   81 (168)
T ss_pred             ccccccccccccchhhhhHhccC----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence            34556667777777777555432    1133467889999999999999999999999999997663   4589999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          465 YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       465 y~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      |..++++++|++.|+++++++|........+..+..
T Consensus        82 ~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         82 HTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            999999999999999999999998887766665544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.61  E-value=9.3e-08  Score=76.83  Aligned_cols=68  Identities=22%  Similarity=0.332  Sum_probs=59.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD----D---TNVSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       418 pd~A~aysNrAlcylrLGdyeeALedaekALkLd----P---d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      |+.+.+|.++|.+|.++|+|++|+.+|++++++.    +   ..+.+++++|.+|..+|++++|++.|++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4567899999999999999999999999999762    1   235689999999999999999999999999873

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.60  E-value=2.3e-07  Score=73.28  Aligned_cols=70  Identities=24%  Similarity=0.326  Sum_probs=63.6

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717          388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL  463 (503)
Q Consensus       388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~  463 (503)
                      ..+|++.++|++|++++++++++      +|.+..+|..+|.|++++|++++|++++++++++.|+...+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            46789999999999999999999      66778999999999999999999999999999999999887766554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.59  E-value=4.1e-07  Score=87.39  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717          397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE----------YKKAVADCSKVLEQDDTNVSVLVQRALLYE  466 (503)
Q Consensus       397 Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd----------yeeALedaekALkLdPd~~kAlyrlA~Ay~  466 (503)
                      |+.|.+.|+.++..      +|.+++.+++.|.+++++-+          +++|++=+++||.|+|+..++++++|.+|.
T Consensus         7 FE~ark~aea~y~~------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    7 FEHARKKAEAAYAK------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            67788888888877      67789999999999888743          567888889999999999999999999998


Q ss_pred             HcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          467 SMEK-----------YKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       467 ~LGd-----------yeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .++.           |++|.++|+++++++|+|...++.|....+
T Consensus        81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            8765           899999999999999999998888876654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=4.7e-07  Score=97.19  Aligned_cols=114  Identities=19%  Similarity=0.112  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ..+.+-.+..++..+++++|++.+...+..      .|++..++..++.++++.++.++|++.+++++.++|...-..++
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~  379 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA------QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLN  379 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHH
Confidence            344455555555555555555555554433      33344455555555555555555555555555555555555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +|.+|+..|++++|+..+++.+.-+|+++.....|.+.+.
T Consensus       380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~  419 (484)
T COG4783         380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA  419 (484)
T ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence            5555555555555555555555555555555555555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.58  E-value=7.4e-07  Score=102.26  Aligned_cols=110  Identities=13%  Similarity=0.076  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .++..+..+.+.+++|+|.+|++.|+++++..|      ........+..++...|++++|+.+|++|+.-.+.+...+.
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P------~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll  106 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGP------LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA  106 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCc------cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence            466788888889999999999999999887733      33212225666666667777777777777733334444444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                      .+|.+|..+|+|++|++.|+++++++|++.++...+
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL  142 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM  142 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            446667777777777777777777777766655544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=9.8e-07  Score=94.78  Aligned_cols=121  Identities=14%  Similarity=-0.024  Sum_probs=109.6

Q ss_pred             CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~  455 (503)
                      .....+..+-..+.++++.+++++|++.|++++.+      +|....+..++|..|++.|++.+|+..++..+..+|+++
T Consensus       335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence            34455666677899999999999999999999999      566678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ..|..++.+|..+|+..+|.+.+-+.+.+.-.-.++...+.+++++.
T Consensus       409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999998888888888777654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.57  E-value=1.8e-07  Score=72.99  Aligned_cols=68  Identities=28%  Similarity=0.295  Sum_probs=60.3

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717          391 NQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL  464 (503)
Q Consensus       391 ~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A  464 (503)
                      +++.|+|++|+++|+++++.      .|.+..++..++.||++.|++++|++.+++++..+|+++..+..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            46889999999999999998      667789999999999999999999999999999999988777766653

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=2.8e-07  Score=98.81  Aligned_cols=70  Identities=23%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717          376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMM---EVLSTRASCYKEVGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A---~aysNrAlcylrLGdyeeALedaekALkLd  451 (503)
                      .....+..+.++|.+|++.++|++|+..|++||++      +|++.   .+|+|+|.||..+|++++|++++++||++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45689999999999999999999999999999999      45555   459999999999999999999999999983

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.53  E-value=7.6e-07  Score=83.80  Aligned_cols=84  Identities=11%  Similarity=-0.038  Sum_probs=78.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      ++..+.++.+|..++..|++++|++.|+.+..+||.+...||.+|.|+..+|+|++|++.|.+++.++|++++....+..
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            45567778899999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHhh
Q 010717          498 LTKM  501 (503)
Q Consensus       498 Lqkl  501 (503)
                      |.-+
T Consensus       112 c~L~  115 (157)
T PRK15363        112 CYLA  115 (157)
T ss_pred             HHHH
Confidence            7644

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.51  E-value=1e-06  Score=88.44  Aligned_cols=101  Identities=17%  Similarity=0.058  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV----  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~----  455 (503)
                      ....+..+|.++...|++++|++.|++++++      .|.+..++..++.+++++|++++|++.+++++.+.|...    
T Consensus       113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~  186 (355)
T cd05804         113 YWYLLGMLAFGLEEAGQYDRAEEAARRALEL------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG  186 (355)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH
Confidence            4556677899999999999999999999998      455678899999999999999999999999999986432    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      ..++.++.+|..+|++++|++.|++++...|
T Consensus       187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            3566899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.50  E-value=9.3e-08  Score=101.22  Aligned_cols=111  Identities=16%  Similarity=0.167  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CC
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD------DT  453 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd------Pd  453 (503)
                      ...++-++|+.||..|+|++||..-++-|++.++.++....-.++.|++.||+-+|+++.|+++|++.+.|.      ..
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v  273 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV  273 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence            456788899999999999999999999999999888888888999999999999999999999999876553      23


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      .++.+|.+|..|..+++|++|++++++-|+|..+-..
T Consensus       274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D  310 (639)
T KOG1130|consen  274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED  310 (639)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999988654433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.50  E-value=2.7e-06  Score=78.81  Aligned_cols=83  Identities=18%  Similarity=0.236  Sum_probs=73.6

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                      .+..+.+++++|.++...+++++|+.+|++++++.++.   ..+++.+|.+|..+|++++|++.|+++++++|.+.....
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            45677889999999999999999999999999987653   468999999999999999999999999999999987766


Q ss_pred             HHHHHH
Q 010717          494 TIHRLT  499 (503)
Q Consensus       494 ~La~Lq  499 (503)
                      .+..+.
T Consensus       111 ~lg~~~  116 (172)
T PRK02603        111 NIAVIY  116 (172)
T ss_pred             HHHHHH
Confidence            666554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.49  E-value=2.2e-06  Score=86.09  Aligned_cols=108  Identities=16%  Similarity=0.141  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-------------------------------CCChhhHHHHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS-------------------------------GDMATMMEVLSTRAS  429 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~-------------------------------~ddpd~A~aysNrAl  429 (503)
                      .+.....+..++..+++++|++.++++++..|.+                               +..+....++..++.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            4456677888888899999988888887654321                               112334455667889


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          430 CYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       430 cylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      ++..+|++++|++.++++++++|++..+++.++.+|+..|++++|++.|++++++.|.+
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence            99999999999999999999999999999999999999999999999999999998754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.49  E-value=6e-07  Score=88.54  Aligned_cols=116  Identities=21%  Similarity=0.171  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ...+......+...++++++.+.++++....    ..+.+..+|..+|.|+.+.|+.++|+++++++++++|++..++..
T Consensus       110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~  185 (280)
T PF13429_consen  110 PRYLLSALQLYYRLGDYDEAEELLEKLEELP----AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA  185 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            4455566777889999999999999987541    124567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++.++..+|+++++.+.+....+..|.++.+...+..+..
T Consensus       186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~  225 (280)
T PF13429_consen  186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL  225 (280)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence            9999999999999988888888887777666666655543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.48  E-value=2.7e-06  Score=96.42  Aligned_cols=115  Identities=13%  Similarity=0.022  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .++.+..+++.+|.+|++++|++++.++|++      +|....+|+-+|.||.++|+.++|+...-.|--++|.+...|.
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~  211 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWK  211 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHH
Confidence            4677888999999999999999999999988      5566788888999998888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +++.....++.+++|+-+|.+|++++|.+.+.......+.+
T Consensus       212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            88888888888888888888888888888665555544443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=5.7e-07  Score=91.91  Aligned_cols=99  Identities=21%  Similarity=0.254  Sum_probs=85.8

Q ss_pred             cHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          366 TTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS  445 (503)
Q Consensus       366 e~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedae  445 (503)
                      ...-+++...+.  .+..|.+++.+|.+.|.|+.|++-++.||.+      +|.+..+|..++++|+.+|+|++|++.|+
T Consensus       102 ~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~RLG~A~~~~gk~~~A~~ayk  173 (304)
T KOG0553|consen  102 DKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGRLGLAYLALGKYEEAIEAYK  173 (304)
T ss_pred             HHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            334445544554  4778889999999999999999999999999      78899999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 010717          446 KVLEQDDTNVSVLVQRALLYESMEKYK  472 (503)
Q Consensus       446 kALkLdPd~~kAlyrlA~Ay~~LGdye  472 (503)
                      ++|+|+|+|....-+|..+-..+.+-+
T Consensus       174 KaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  174 KALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999988888887777776655

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.48  E-value=1.4e-06  Score=100.14  Aligned_cols=113  Identities=8%  Similarity=0.088  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|..+...|+|++|+++|++++++      +|.+..++..++.++.+.+++++|++.++++++++|..... .
T Consensus       101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l  173 (822)
T PRK14574        101 SSRGLASAARAYRNEKRWDQALALWQSSLKK------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-M  173 (822)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-H
Confidence            4556666677888888888888888888887      45556777777888888888888888888888888874433 4


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .++.++..++++.+|++.|+++++++|++.++...+..+.
T Consensus       174 ~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l  213 (822)
T PRK14574        174 TLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEIL  213 (822)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4455555567776788888888888888887766655443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.47  E-value=1.7e-06  Score=92.79  Aligned_cols=68  Identities=22%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV---LVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA---lyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      +|.++.+|+|+|.+|+++|+|++|+..|+++|+++|++.++   ||++|.||..+|++++|+++|++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            68889999999999999999999999999999999999865   999999999999999999999999998

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.47  E-value=2.1e-06  Score=71.95  Aligned_cols=78  Identities=18%  Similarity=0.124  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTI  495 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~L  495 (503)
                      .+++.++.++++.+++++|++.|++++..+|++   ..+++.+|.+++..+++++|+..|+++++++|++   ..+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            578889999999999999999999999999876   6799999999999999999999999999999986   4455555


Q ss_pred             HHHH
Q 010717          496 HRLT  499 (503)
Q Consensus       496 a~Lq  499 (503)
                      ..+.
T Consensus        83 ~~~~   86 (119)
T TIGR02795        83 GMSL   86 (119)
T ss_pred             HHHH
Confidence            4443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.46  E-value=3.1e-06  Score=92.70  Aligned_cols=111  Identities=13%  Similarity=0.091  Sum_probs=87.4

Q ss_pred             chHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcC--------------------------------------CC
Q 010717          379 VTGAAAKNKGVDNQKAGQ---YADAIKWLSWAVILLEKSG--------------------------------------DM  417 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGD---Y~eAIk~YeKALeL~pk~~--------------------------------------dd  417 (503)
                      ..+-.++..|..++.+.+   +..|+.+|++|++++|...                                      .+
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~  416 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL  416 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence            356667788888877655   7889999999998865311                                      01


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      +....+|.-++..++..|++++|+..++++++++| +..+|+.+|.+|...|++++|++.|+++++++|.++.
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            12234566677777788999999999999999999 4789999999999999999999999999999998764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.46  E-value=2.5e-06  Score=89.08  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      .+..+...++..||+..||++.++.|++      .+=++.+|..|+.||...++..+||.+++++-+|.-++.+.+|.+.
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis  230 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKIS  230 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHH
Confidence            3455666778899999999999999999      6678999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      .+|+..|+.++++...++.|+++|+++...
T Consensus       231 ~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf  260 (504)
T KOG0624|consen  231 QLLYTVGDAENSLKEIRECLKLDPDHKLCF  260 (504)
T ss_pred             HHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence            999999999999999999999999996553

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=4.3e-07  Score=96.14  Aligned_cols=123  Identities=22%  Similarity=0.182  Sum_probs=105.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT  453 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d------dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd  453 (503)
                      .+.+++..|.+++-..+.+.|+..|+++|.++|...+      .+...+.+-++|.-.++.|+|.+|.+.|.++|.++|.
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~  281 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS  281 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence            5778999999999999999999999999999764322      3455677888999999999999999999999999998


Q ss_pred             C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          454 N----VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       454 ~----~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +    ++.|+++|.++..+|+.++|+.++..+++||+....+.....+|...+
T Consensus       282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l  334 (486)
T KOG0550|consen  282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL  334 (486)
T ss_pred             ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence            6    567999999999999999999999999999998766666655555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.43  E-value=1.2e-06  Score=97.90  Aligned_cols=105  Identities=19%  Similarity=0.177  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA--DCSKVLEQDDTNVSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALe--daekALkLdPd~~kA  457 (503)
                      .+..|+..|..+..++++.+|.+.|..|+.+      +|+...+...+|.|+++.|+-.-|..  .+..++++||.+.++
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea  756 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALAL------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA  756 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence            5778999999999999999999999999999      67788899999999999999877777  999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      ||.+|.++..+|+.++|.++|+.+++|++.++.
T Consensus       757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999999988754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.43  E-value=2e-06  Score=89.12  Aligned_cols=121  Identities=15%  Similarity=0.058  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ..++..+-.+|-+.++|++||+.-++.+++.++ ...-..+..|+.++..++...+.++|+..+.+|++.+|+.+.+-+.
T Consensus       141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~  219 (389)
T COG2956         141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII  219 (389)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence            345566677777777777777777776665322 1234578889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHhhh
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSN-RIARSTIHRLTKMV  502 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen-~eAk~~La~LqklL  502 (503)
                      +|.+++..|+|++|++.|+.+++.||+. .++...|.+|...+
T Consensus       220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l  262 (389)
T COG2956         220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL  262 (389)
T ss_pred             hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999987 57777777776654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.42  E-value=2e-06  Score=98.17  Aligned_cols=118  Identities=18%  Similarity=0.131  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-VSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-~kAl  458 (503)
                      .+.++..+++-+|-.++|..+.+++..|+...   ......++.++.+|.+|..+|+|++|..+|.++++.++++ .-++
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~  345 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL  345 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence            57788999999999999999999999999763   2245677889999999999999999999999999999988 8899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +.+|+.|+..++++.|+.+|+++++..|++.+....|..+..
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA  387 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence            999999999999999999999999999999999988887754

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.38  E-value=3.6e-06  Score=84.58  Aligned_cols=109  Identities=12%  Similarity=0.119  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL  464 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A  464 (503)
                      ......++..|+-+.++.+..+++..      .+.+.+++..++...++.|+|.+|+..++++..++|++.++|..+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa  143 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA  143 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence            67788888999988888888886654      455667777799999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          465 YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       465 y~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      |..+|++++|...|.+++++.|.++.+...|.-..
T Consensus       144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~  178 (257)
T COG5010         144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL  178 (257)
T ss_pred             HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence            99999999999999999999999998888776553

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.37  E-value=4e-06  Score=91.63  Aligned_cols=111  Identities=24%  Similarity=0.258  Sum_probs=96.7

Q ss_pred             CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 010717          375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-  451 (503)
Q Consensus       375 ~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-  451 (503)
                      ......+..+.+++..|+++|+|++|..+|++|+++..+.  ...+.-+..+.+++.++..++++++|+.++++++++. 
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~  356 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL  356 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            3444578889999999999999999999999999998762  2356678889999999999999999999999999874 


Q ss_pred             ----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          452 ----D---TNVSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       452 ----P---d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                          +   .-++.+.++|.+|+.+|+|++|.+.|++++++.
T Consensus       357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                2   336688899999999999999999999999986

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.36  E-value=3.2e-06  Score=95.90  Aligned_cols=115  Identities=19%  Similarity=0.262  Sum_probs=101.9

Q ss_pred             cccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 010717          364 GTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVAD  443 (503)
Q Consensus       364 aae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALed  443 (503)
                      +.+...|.++..+.  ...+|+.+|.+|..+||...|+.....|-.+      +|.+...|..++....++|++++|.-+
T Consensus       158 A~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------~p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  158 AEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------NPKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             HHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            33344455555554  4778999999999999999999999998888      445568999999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       444 aekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      |.+||+++|.+.+..++++.+|.++|++.+|++.|++++++.|
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999999999999999999

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.36  E-value=7.9e-06  Score=81.99  Aligned_cols=110  Identities=22%  Similarity=0.277  Sum_probs=89.2

Q ss_pred             chHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 010717          379 VTGAAAKNKGVDNQKA-GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT----  453 (503)
Q Consensus       379 ~~A~alk~lGn~~fkq-GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd----  453 (503)
                      .-+.++..+|.+|... +++++|+++|++|+++....+.......++.+++.++.++++|++|++.|++++...-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            3466788899999888 99999999999999998877766667788899999999999999999999999875421    


Q ss_pred             --CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          454 --NV-SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       454 --~~-kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                        .. +.++..+.|++.++|+..|.+.|++...++|..
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence              13 245677889999999999999999999999843

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.34  E-value=2.7e-07  Score=95.75  Aligned_cols=102  Identities=19%  Similarity=0.272  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+...+..+..++..|++++||+.|..||++      .|..+.+|.+|+.+++++++..+|+.+|..+|+++|+..+-|-
T Consensus       113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~yk  186 (377)
T KOG1308|consen  113 QANDKKVQASEALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK  186 (377)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccc
Confidence            4556777888999999999999999999998      6788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      -++.+...++++++|..+|+.+++++-+
T Consensus       187 frg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  187 FRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999753

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=2.3e-06  Score=84.88  Aligned_cols=112  Identities=22%  Similarity=0.215  Sum_probs=104.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 010717          373 PPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD  452 (503)
Q Consensus       373 ~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP  452 (503)
                      +....++++..++..|..|-..|-+..|.--|.+++.+      .|..+.+++-+|..+...|+|+.|.+.++..+++||
T Consensus        57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp  130 (297)
T COG4785          57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP  130 (297)
T ss_pred             ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence            34456678999999999999999999999999999999      677889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          453 TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       453 d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      .+--++.++|.+++.-|+|+.|.++|.+-.+-||.++-
T Consensus       131 ~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            99999999999999999999999999999999998864

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=4.5e-06  Score=88.19  Aligned_cols=101  Identities=19%  Similarity=0.169  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ...++.+++.++.+.++|.+|+++++++|++      ++.+..+++.+|.|++.+++|+.|+.+|+++++++|.+-.+..
T Consensus       256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~  329 (397)
T KOG0543|consen  256 KLACHLNLAACYLKLKEYKEAIESCNKVLEL------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA  329 (397)
T ss_pred             HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4557889999999999999999999999999      6677899999999999999999999999999999999988888


Q ss_pred             HHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 010717          460 QRALLYESMEKYKLG-AEDLRTVLKIDP  486 (503)
Q Consensus       460 rlA~Ay~~LGdyeeA-le~LqkALkLDP  486 (503)
                      .+..+.....++.+. .+.|.+++..-.
T Consensus       330 el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  330 ELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            888888877776665 777888887654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.28  E-value=4.9e-06  Score=88.46  Aligned_cols=106  Identities=18%  Similarity=0.095  Sum_probs=90.5

Q ss_pred             cHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          366 TTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS  445 (503)
Q Consensus       366 e~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedae  445 (503)
                      ...++.+....++    ....++.++...++..+|++++.++|+.      .|.++.++...+..+++.++++.|++.++
T Consensus       189 i~lle~L~~~~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk  258 (395)
T PF09295_consen  189 IELLEKLRERDPE----VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELLNLQAEFLLSKKKYELALEIAK  258 (395)
T ss_pred             HHHHHHHHhcCCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3445555544443    4556888888899999999999999966      45568999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717          446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV  481 (503)
Q Consensus       446 kALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkA  481 (503)
                      +++.+.|...+.|+.++.+|..+|+|++|+..+..+
T Consensus       259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  259 KAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999888744

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00540 hemY_coli hemY protein

Probab=98.28  E-value=2e-05  Score=82.87  Aligned_cols=94  Identities=19%  Similarity=0.096  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATM-MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL  463 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~-A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~  463 (503)
                      ...+..+..+|++++|.++|.++++..+      +. ..+...++.+++..+++++|++.+++.++..|+++.+++.++.
T Consensus       122 llaA~aa~~~g~~~~A~~~l~~a~~~~p------~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~  195 (409)
T TIGR00540       122 IKAAEAAQQRGDEARANQHLEEAAELAG------NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEE  195 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC------cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3344444555555555555555443311      11 1122223455555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q 010717          464 LYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       464 Ay~~LGdyeeAle~LqkALkL  484 (503)
                      +|...+++++|++.+++.++.
T Consensus       196 ~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       196 AYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHhhHHHHHHHHHHHHHc
Confidence            555555555555555555544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.26  E-value=7.7e-06  Score=89.46  Aligned_cols=106  Identities=22%  Similarity=0.299  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD------  451 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd------  451 (503)
                      .+..+..+|..|...++|.+|+.+|++|+.+.+..  .+.+.-+.++.|+|..|.+.|+|++|..+|++|++|.      
T Consensus       240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~  319 (508)
T KOG1840|consen  240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA  319 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence            45566679999999999999999999999987642  3467888999999999999999999999999999874      


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          452 --DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       452 --Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                        ++-...+..++.++..++++++|+..|++++++.
T Consensus       320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence              3335577788999999999999999999999975

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=1.6e-05  Score=80.24  Aligned_cols=111  Identities=18%  Similarity=0.176  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .....+..|..+...+.|++|+++|+..|+-      +|.+..+|-..-.+...+|+--+||+.+..-++..+.+.++|.
T Consensus        85 S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~  158 (289)
T KOG3060|consen   85 SKRVGKLKAMLLEATGNYKEAIEYYESLLED------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH  158 (289)
T ss_pred             ChhHHHHHHHHHHHhhchhhHHHHHHHHhcc------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH
Confidence            3456777888999999999999999887743      3333333333333333444444444444444444444444444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      .++.+|..+++|++|+-||++++-+.|-+......+.
T Consensus       159 eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla  195 (289)
T KOG3060|consen  159 ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA  195 (289)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            4444444444444444444444444444444333333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=1.1e-05  Score=88.35  Aligned_cols=98  Identities=19%  Similarity=0.172  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717          384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL  463 (503)
Q Consensus       384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~  463 (503)
                      -+.+|..+++.|+..+|+-+|+.|+..      +|.++++|..||.++.+.++-..||..+++|++|+|++.+++..||.
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkq------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAV  361 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQ------DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAV  361 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhh------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            467899999999999999999999987      78899999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          464 LYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       464 Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      .|...+.-.+|+++|.+-|+..|.
T Consensus       362 SytNeg~q~~Al~~L~~Wi~~~p~  385 (579)
T KOG1125|consen  362 SYTNEGLQNQALKMLDKWIRNKPK  385 (579)
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcc
Confidence            999999999999999999888763

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.20  E-value=4.1e-05  Score=80.42  Aligned_cols=97  Identities=21%  Similarity=0.106  Sum_probs=60.1

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717          388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATM-MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE  466 (503)
Q Consensus       388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~-A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~  466 (503)
                      +..+.++|++++|.++|.+|.+..      ++. .......+.+++..|++++|++.+++.++++|+++.++..++.+|.
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~------~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~  198 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELA------DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI  198 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            444466677777777777666541      121 1122233666667777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          467 SMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       467 ~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      ..|++++|++.+.+..+....+.+
T Consensus       199 ~~gdw~~a~~~l~~l~k~~~~~~~  222 (398)
T PRK10747        199 RTGAWSSLLDILPSMAKAHVGDEE  222 (398)
T ss_pred             HHHhHHHHHHHHHHHHHcCCCCHH
Confidence            777777777666666666555433

>TIGR00540 hemY_coli hemY protein

Probab=98.19  E-value=2.1e-05  Score=82.69  Aligned_cols=114  Identities=8%  Similarity=-0.119  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEV--LSTRASCYKEVGEYKKAVADCSKVLEQDDTNV--  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~a--ysNrAlcylrLGdyeeALedaekALkLdPd~~--  455 (503)
                      ....+..++..+...|++++|++.++++++..+      +....  ..-+....+..++.+++++.++++++.+|+++  
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p------d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~  335 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG------DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC  335 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC------CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH
Confidence            567888899999999999999999999998733      22221  12233444556889999999999999999999  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHh
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLR--TVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~Lq--kALkLDPen~eAk~~La~Lqk  500 (503)
                      ..+..+|.+++.+++|++|.++|+  .+++++|++.... .+.++..
T Consensus       336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~  381 (409)
T TIGR00540       336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFD  381 (409)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHH
Confidence            788899999999999999999999  5888888776644 6666544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.18  E-value=1.7e-05  Score=91.57  Aligned_cols=62  Identities=21%  Similarity=0.229  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      .++..+|.||-++|++++|++.|+++|+++|+++.++.++|-.|... +.++|++.+.+|++.
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555 555555555555554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.18  E-value=9.6e-06  Score=81.36  Aligned_cols=106  Identities=19%  Similarity=0.177  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD--T----  453 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP--d----  453 (503)
                      -+..+...|+.|...++|++|.+.|.+|.++..+..+...-+..|.+.+.||.+. ++++|++.+++|+.+.-  .    
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~  112 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3556667788899999999999999999998877666666778888888888666 99999999999998731  1    


Q ss_pred             CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC
Q 010717          454 NVSVLVQRALLYESM-EKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       454 ~~kAlyrlA~Ay~~L-GdyeeAle~LqkALkLDP  486 (503)
                      -.+++.++|.+|... +++++|+++|++++++..
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~  146 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE  146 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            256888999999998 999999999999999854

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.17  E-value=1.4e-05  Score=91.37  Aligned_cols=118  Identities=18%  Similarity=0.187  Sum_probs=105.6

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..++.++.+|..|.++|+|++|.++|.+++...+     ....-.++.+|..|++.++++.|+..++++++..|++.+.+
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm  379 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM  379 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence            3577899999999999999999999999997622     12356788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          459 VQRALLYESME----KYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       459 yrlA~Ay~~LG----dyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ..+|.+|...+    ..++|...+.++++..|.+.++...+.++.++
T Consensus       380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            99999999886    67899999999999999999999988888654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.15  E-value=9.9e-05  Score=66.64  Aligned_cols=115  Identities=15%  Similarity=0.072  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~k  456 (503)
                      .+...+......+..+++..+.+.+++.++-   .++.+.-..++..++.+++..|++++|++.|++++...++.   ..
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~   86 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL   86 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence            3556667777777899999998888887764   34444556778889999999999999999999999987654   45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +.++++.+++.+++|++|+..|+.+ .-.+-...+...+..+
T Consensus        87 a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi  127 (145)
T PF09976_consen   87 ARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDI  127 (145)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHH
Confidence            8999999999999999999999763 2222233444444444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.3e-05  Score=87.51  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-------DDTNVSV  457 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-------dPd~~kA  457 (503)
                      .-+|..|.+.+.++.|.++|.+|+.+      .|.+.-++..+|.+.+..++|.+|+.++++++..       -+.|...
T Consensus       384 LYlgmey~~t~n~kLAe~Ff~~A~ai------~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~  457 (611)
T KOG1173|consen  384 LYLGMEYMRTNNLKLAEKFFKQALAI------APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT  457 (611)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhc------CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence            34788888899999999999999988      4456679999999999999999999999999832       1357778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +.++|.+|+++++|++|+.+|+++|.+.|.+..+...+.-+.-+
T Consensus       458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l  501 (611)
T KOG1173|consen  458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL  501 (611)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999988887766544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.13  E-value=4.1e-06  Score=89.76  Aligned_cols=113  Identities=15%  Similarity=0.129  Sum_probs=92.8

Q ss_pred             HHHHHHHHH--hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          385 KNKGVDNQK--AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       385 k~lGn~~fk--qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      .++...+|.  -+++.+|..+-..|+.+      +...+.++.|.+.+.+..|++++|++.|+++|..+....+++|++|
T Consensus       458 ~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig  531 (840)
T KOG2003|consen  458 NNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG  531 (840)
T ss_pred             hhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            344444444  23566666666666655      3445677888888889999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhhC
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMVD  503 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklLd  503 (503)
                      ..+..+++.++|+++|.+...+--++.++...+..+.++++
T Consensus       532 lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le  572 (840)
T KOG2003|consen  532 LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE  572 (840)
T ss_pred             ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            99999999999999999999998899999998888877653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.12  E-value=4.7e-05  Score=79.99  Aligned_cols=116  Identities=11%  Similarity=0.091  Sum_probs=93.9

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTR-ASCYKEVGEYKKAVADCSKVLEQDDTNVS-  456 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNr-AlcylrLGdyeeALedaekALkLdPd~~k-  456 (503)
                      .++..+...|..++..|||++|.+...++.+.    .+.   ..+++.+ +.+..+.|++++|.++++++.+.+|+... 
T Consensus        82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~---p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~  154 (398)
T PRK10747         82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQ---PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP  154 (398)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH
Confidence            35667788999999999999999887776543    111   2344444 66669999999999999999999998754 


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .....+.++...+++++|++.++++++++|+++.+...+.+++..
T Consensus       155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~  199 (398)
T PRK10747        155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR  199 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            444569999999999999999999999999999988888776543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=1e-05  Score=84.22  Aligned_cols=113  Identities=13%  Similarity=0.006  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .++.+..+..+|.+..+...|+..|.+.++.      -|.+.+.+..++.++..++++++|+++|+.+++++|.++++.-
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA  328 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDS------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA  328 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhc------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence            3566677777777777777777777777765      3556777777788888888888888888888887777777766


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      .+|.-|+.-++.|-|+.+|+++|++.-.+++....+.-|
T Consensus       329 cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC  367 (478)
T KOG1129|consen  329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC  367 (478)
T ss_pred             eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence            666667767777777777777777666666666555544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=3.8e-05  Score=77.59  Aligned_cols=113  Identities=20%  Similarity=0.107  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....++.+-.+...+|+-.+||+.+.+-++.+      +.+.++|..++.+|+..++|++|.-++++++.+.|.++-.+-
T Consensus       119 ~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~  192 (289)
T KOG3060|consen  119 DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ  192 (289)
T ss_pred             hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence            45566777677788899999999998888874      356799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          460 QRALLYESME---KYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       460 rlA~Ay~~LG---dyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      ++|.+++-+|   +++-|.++|.++|++.|.+..+...+--+
T Consensus       193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            9999998876   57779999999999999775555444333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.09  E-value=4e-05  Score=86.21  Aligned_cols=116  Identities=18%  Similarity=0.073  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      -..+...+..+.+.+.-++|.-++.+|-.+      ++..+..|+.+|.++...|+.++|.+.|..++.++|+++.....
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A  723 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKI------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA  723 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhc------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence            345666788888888889999999999887      56788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          461 RALLYESMEKYKLGAE--DLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle--~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +|.+|...|+-..|..  .+..++++||.+.++...+.++.+.+
T Consensus       724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~  767 (799)
T KOG4162|consen  724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL  767 (799)
T ss_pred             HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            9999999999888888  99999999999999999999887764

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=3.4e-06  Score=87.96  Aligned_cols=122  Identities=16%  Similarity=0.203  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-------------MATMMEVLSTRASCYKEVGEYKKAVADCSK  446 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-------------dpd~A~aysNrAlcylrLGdyeeALedaek  446 (503)
                      .....+..++..++.++|.+|+..|.+++........             ......++.|++.|-++++.+..|+..+..
T Consensus       221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~  300 (372)
T KOG0546|consen  221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE  300 (372)
T ss_pred             hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence            3455677899999999999999999999987551110             122345678899999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          447 VLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       447 ALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++.++...++||+++.+++.+.++++|+++++.+....|++.++...+....+.
T Consensus       301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            9999999999999999999999999999999999999999999998888776554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.07  E-value=1.1e-05  Score=90.32  Aligned_cols=96  Identities=13%  Similarity=0.098  Sum_probs=86.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717          387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE  466 (503)
Q Consensus       387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~  466 (503)
                      +|.-.+.+++|.+|.+.++..+++      .+.....|++++.|++++++++.|+++|..|+.++|++..+|.+++.+|+
T Consensus       491 ~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  491 LALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             hccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            344445568999999999999988      67788999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 010717          467 SMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       467 ~LGdyeeAle~LqkALkLDPen  488 (503)
                      .+++..+|...++++++-+-++
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCC
Confidence            9999999999999999987544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=6.4e-05  Score=77.15  Aligned_cols=144  Identities=19%  Similarity=0.187  Sum_probs=109.3

Q ss_pred             ccccccccCCCCCCCcccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 010717          349 DDWGYSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRA  428 (503)
Q Consensus       349 ~DW~Vd~f~ag~d~eaae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrA  428 (503)
                      +.--|++|.+...++.....++.+...    ..+.....+..+...+++.+|...|..++.+.      +....+...++
T Consensus       106 dGqpVdgF~G~qPesqlr~~ld~~~~~----~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~------~~~~~~~~~la  175 (304)
T COG3118         106 DGQPVDGFQGAQPESQLRQFLDKVLPA----EEEEALAEAKELIEAEDFGEAAPLLKQALQAA------PENSEAKLLLA  175 (304)
T ss_pred             CCcCccccCCCCcHHHHHHHHHHhcCh----HHHHHHHHhhhhhhccchhhHHHHHHHHHHhC------cccchHHHHHH
Confidence            344677777665444455555554444    23345667888999999999999999999883      44467888899


Q ss_pred             HHHHHcCCHHHHHHHHHH----------------------------------HHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 010717          429 SCYKEVGEYKKAVADCSK----------------------------------VLEQDDTNVSVLVQRALLYESMEKYKLG  474 (503)
Q Consensus       429 lcylrLGdyeeALedaek----------------------------------ALkLdPd~~kAlyrlA~Ay~~LGdyeeA  474 (503)
                      .||+..|+.++|...+..                                  .+..+|++..+.+.+|..|...|++++|
T Consensus       176 ~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A  255 (304)
T COG3118         176 ECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAA  255 (304)
T ss_pred             HHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999887766642                                  1224699999999999999999999999


Q ss_pred             HHHHHHHHHhCC--CCHHHHHHHHHHHhhh
Q 010717          475 AEDLRTVLKIDP--SNRIARSTIHRLTKMV  502 (503)
Q Consensus       475 le~LqkALkLDP--en~eAk~~La~LqklL  502 (503)
                      ++.|...|+.|-  ++.++++.|.++..+.
T Consensus       256 le~Ll~~l~~d~~~~d~~~Rk~lle~f~~~  285 (304)
T COG3118         256 LEHLLALLRRDRGFEDGEARKTLLELFEAF  285 (304)
T ss_pred             HHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence            999999999865  4567777777766554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.06  E-value=2.5e-05  Score=81.45  Aligned_cols=99  Identities=20%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717          386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY  465 (503)
Q Consensus       386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay  465 (503)
                      .+|.+|++.|-+.+|.+.++.+|+..+       ..+.+..++.+|.+..+.+.|+..+.+.+...|.+...+...+.+|
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~-------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence            479999999999999999999997622       3567777999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717          466 ESMEKYKLGAEDLRTVLKIDPSNRIA  491 (503)
Q Consensus       466 ~~LGdyeeAle~LqkALkLDPen~eA  491 (503)
                      ..++++++|++.|+++++++|.|.|+
T Consensus       301 eam~~~~~a~~lYk~vlk~~~~nvEa  326 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLHPINVEA  326 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcCCcccee
Confidence            99999999999999999999977654

>PRK11906 transcriptional regulator; Provisional

Probab=98.06  E-value=5.4e-05  Score=81.64  Aligned_cols=109  Identities=10%  Similarity=-0.072  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhC---CHHHHHHHHHHHH---HHHHhcCCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 010717          383 AAKNKGVDNQKAG---QYADAIKWLSWAV---ILLEKSGDMATMMEVLSTRASCYKEV---------GEYKKAVADCSKV  447 (503)
Q Consensus       383 alk~lGn~~fkqG---DY~eAIk~YeKAL---eL~pk~~ddpd~A~aysNrAlcylrL---------GdyeeALedaekA  447 (503)
                      .++..|...+.+.   +.+.|+.+|.+|+   ++      +|.++.+|..++.|++..         .+..+|++.++++
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA  330 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV  330 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            4566666665444   4567888888888   66      677788888888887654         2356778888888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          448 LEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       448 LkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      ++++|.++.++..+|.++...++++.|+..|++++.++|+...+......
T Consensus       331 veld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~  380 (458)
T PRK11906        331 SDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL  380 (458)
T ss_pred             HhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence            88888888888888888888888888888888888888887776655554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.8e-05  Score=82.86  Aligned_cols=121  Identities=12%  Similarity=0.058  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC------------------------------CChhhHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG------------------------------DMATMMEVLSTRAS  429 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~------------------------------ddpd~A~aysNrAl  429 (503)
                      +.++|.-+-..|...+++.||...-.+++.+++...                              -.|.+..+-..++.
T Consensus       367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE  446 (564)
T KOG1174|consen  367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE  446 (564)
T ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence            345566666778888888888887777766554211                              14566667778899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          430 CYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       430 cylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+...|++++++..+++.|...++. ..+..+|.++....++++|+++|..+|++||++....+.++++++.
T Consensus       447 L~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  447 LCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS  517 (564)
T ss_pred             HHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence            9999999999999999999988755 4788899999999999999999999999999999999999999875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.03  E-value=0.00012  Score=70.20  Aligned_cols=118  Identities=18%  Similarity=0.158  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-----------EYKKAVADCSKVL  448 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-----------dyeeALedaekAL  448 (503)
                      ...+.+.+|..+++.++|.+|+..|++.++..|+   .+....+++.+|.|++.+.           ...+|+..++..+
T Consensus        41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li  117 (203)
T PF13525_consen   41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI  117 (203)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999988665   4566788999999987653           2458999999999


Q ss_pred             HcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          449 EQDDTNVS-----------------VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       449 kLdPd~~k-----------------AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ...|+...                 --+..|.-|+..++|..|+..|+.+++..|+...+...|..+.+
T Consensus       118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~  186 (203)
T PF13525_consen  118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE  186 (203)
T ss_dssp             HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            99998632                 12335888999999999999999999999999877776666543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=3e-05  Score=78.88  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=99.2

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA  457 (503)
                      +........+|.+.++.||.+.|..+++..-+...+...-.....++-|.+.+|+-.++|.+|...+++|+..|+.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            34577788899999999999999999997665444433334556788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      -.++|.|++.+++..+|++.++.+++++|......
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e  323 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE  323 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence            99999999999999999999999999999865444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.02  E-value=3.1e-05  Score=85.74  Aligned_cols=114  Identities=18%  Similarity=0.138  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR  461 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl  461 (503)
                      ..++.....+|..++|...++..++.|+-      .|...+.+...|+.+..+|+-++|...++.++..|+...-.|+.+
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~   81 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKK------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL   81 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHh------CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence            35677788889999999999999888874      344567788889999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       462 A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      |.+++.-++|++|+.+|+.||+++|+|.++...|.-+|.+
T Consensus        82 gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   82 GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.01  E-value=0.00019  Score=71.37  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC------------------HHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE------------------YKKAV  441 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd------------------yeeAL  441 (503)
                      ...+.+.+|..+++.++|++|+..|++.+++.|+   .+....+++.+|.|++.+++                  ..+|+
T Consensus        68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~  144 (243)
T PRK10866         68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF  144 (243)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence            3445688999999999999999999999998555   45667899999999766641                  35789


Q ss_pred             HHHHHHHHcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          442 ADCSKVLEQDDTNVS---V--------------LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       442 edaekALkLdPd~~k---A--------------lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +.+++.++..|+..-   +              -+..|.-|++.++|..|+..|+.+++..|+.......|..+.+
T Consensus       145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~  220 (243)
T PRK10866        145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN  220 (243)
T ss_pred             HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            999999999998632   2              2234777999999999999999999999998777766665543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.00  E-value=6e-05  Score=87.21  Aligned_cols=112  Identities=19%  Similarity=0.206  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-----------  450 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-----------  450 (503)
                      .+++.+|.+|-+.+++++|++.|+++|++      ++.++.++.++|..|... ++++|++++.+|++.           
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~  189 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIE  189 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHH
Confidence            58899999999999999999999999999      678899999999999999 999999999999864           


Q ss_pred             ---------CCCCHHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          451 ---------DDTNVSVLVQ--------RA------------LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       451 ---------dPd~~kAlyr--------lA------------~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                               +|++.+.+++        ++            .+|..+++|++++..|+.+|+++|.|..++..|.+|..
T Consensus       190 e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        190 EIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence                     2433333221        23            78888999999999999999999999999999988865

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.99  E-value=0.00011  Score=76.50  Aligned_cols=106  Identities=18%  Similarity=0.101  Sum_probs=95.0

Q ss_pred             CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-H
Q 010717          377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-V  455 (503)
Q Consensus       377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-~  455 (503)
                      ...+++.+..++..+....+.+.|+.++.+|+..      ++..+.+-..+|.+++..|+|++|++.++.+++.+|+. .
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~  249 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS  249 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence            3457888999999999999999999999999988      44556677778999999999999999999999999987 5


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      ++.-.+-.||..+|+.++.+..+.++.+..++.
T Consensus       250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            688889999999999999999999999988754

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4e-05  Score=81.73  Aligned_cols=119  Identities=13%  Similarity=0.085  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCh----------------------------hhHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMA----------------------------TMMEVLSTRASCY  431 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddp----------------------------d~A~aysNrAlcy  431 (503)
                      ....+..+|.+++..||+.+|+..|+++..+++..-...                            ..+.-|+--+...
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l  310 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL  310 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence            467888999999999999999999999987654221100                            1111223234455


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          432 KEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       432 lrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +..++|+.|+.+.+|||..+|++.++++.+|.++..+++.++|+-.|+.+..|.|-+.++.+.|..+
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS  377 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            7788999999999999999999999999999999999999999999999999999887777766554

>PRK11906 transcriptional regulator; Provisional

Probab=97.99  E-value=0.00011  Score=79.26  Aligned_cols=105  Identities=13%  Similarity=0.018  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717          380 TGAAAKNKGVDNQKA---------GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ  450 (503)
Q Consensus       380 ~A~alk~lGn~~fkq---------GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL  450 (503)
                      .+.+|..++.+++..         .+-.+|++.-++|+++      ++.++.++..+|.++...++++.|+..+++|+.+
T Consensus       294 ~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L  367 (458)
T PRK11906        294 KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH  367 (458)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc
Confidence            455666666665543         3466788889999998      6778899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          451 DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       451 dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      +|+.+.++|.+|.++...|+.++|++.++++++++|-...
T Consensus       368 ~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        368 STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            9999999999999999999999999999999999997643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.97  E-value=0.0002  Score=72.18  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---H
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV---S  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~---k  456 (503)
                      -+..|++.|...+..|+|.+|++.|++....   .+-.+....+...++.++++.++|++|+..+++-+++.|.++   -
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~---~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY  109 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSR---HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY  109 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence            4678999999999999999999999998765   333455578888999999999999999999999999998775   4


Q ss_pred             HHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHh
Q 010717          457 VLVQRALLYESMEK--------YKLGAEDLRTVLKIDPSNR---IARSTIHRLTK  500 (503)
Q Consensus       457 AlyrlA~Ay~~LGd--------yeeAle~LqkALkLDPen~---eAk~~La~Lqk  500 (503)
                      ++|.+|.+++..-+        ..+|+..|++.++..|+.+   .++..+..+..
T Consensus       110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d  164 (254)
T COG4105         110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND  164 (254)
T ss_pred             HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            78888999766432        5678999999999999884   44444444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.91  E-value=7e-05  Score=75.56  Aligned_cols=73  Identities=12%  Similarity=0.010  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          421 MEVLSTRASCY-KEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       421 A~aysNrAlcy-lrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                      ...+++.+.++ ++.++|++|+..|++.++..|+.   +.++|.+|.+|+.+++|++|+..|+++++.+|++.....
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d  218 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD  218 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence            46677788876 66799999999999999999988   579999999999999999999999999999998744333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.88  E-value=0.0002  Score=65.40  Aligned_cols=100  Identities=11%  Similarity=0.143  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------C
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM------ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-------D  451 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd------pd~A~aysNrAlcylrLGdyeeALedaekALkL-------d  451 (503)
                      ...|...+..+-|++|..-|.+|+++..+.+..      ..++-++.-++.++..+|+|+++|...+++|..       +
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            345677788999999999999999997765542      356778888999999999999999999999853       3


Q ss_pred             C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          452 D----TNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       452 P----d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      .    .|+.+.+.++.++..+|+.++|+..|+.+-++
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3    36788899999999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=3.6e-05  Score=83.90  Aligned_cols=106  Identities=17%  Similarity=0.156  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV---GEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL---GdyeeALedaekALkLdPd~~k  456 (503)
                      .++.++..|+..+-......||..|.+++..      .++...+|.||+.++++.   ++.-.|+.+|..+|+++|...+
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k  446 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQY------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK  446 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhh------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence            5778888999999999999999999999976      567788999999999884   5678899999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA  491 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eA  491 (503)
                      +||+++.++..++++.+|+++...+....|.+...
T Consensus       447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~  481 (758)
T KOG1310|consen  447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVAR  481 (758)
T ss_pred             HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence            99999999999999999999998888888855443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.87  E-value=2.2e-05  Score=64.36  Aligned_cols=67  Identities=34%  Similarity=0.379  Sum_probs=58.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          434 VGEYKKAVADCSKVLEQDDT--NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       434 LGdyeeALedaekALkLdPd--~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .++|++|+..++++++.+|.  +...++.+|.||+.+++|++|++.+++ +++++.+..+...+.++.-.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999995  466788899999999999999999999 88999888888887776543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.84  E-value=0.00024  Score=75.83  Aligned_cols=104  Identities=19%  Similarity=0.155  Sum_probs=91.5

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 010717          390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESME  469 (503)
Q Consensus       390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG  469 (503)
                      .+-..++|+.|+++|++..+.      +|   ++...++.+++..++..+|++.++++|+..|.+...+...+..|+..+
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~------~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRER------DP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhc------CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            334567899999999997755      23   356668999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          470 KYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       470 dyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +|+.|++..+++.++.|.+.+....|.++...+
T Consensus       249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  249 KYELALEIAKKAVELSPSEFETWYQLAECYIQL  281 (395)
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence            999999999999999999999999998887654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=0.00013  Score=74.38  Aligned_cols=110  Identities=15%  Similarity=0.075  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHcCCCCH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE--VG--EYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr--LG--dyeeALedaekALkLdPd~~  455 (503)
                      ..++....-.++++.++++.|.+.++.+.++    .  .+  .++.+++.+|+.  .|  ++.+|...|++.....+.++
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~--eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~  201 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQI----D--ED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP  201 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----S--CC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--Cc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH
Confidence            3455555566777777777777766665422    1  11  222333333322  22  34555555555444444445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      ..+..++.|++.+++|++|.+.++++++.+|.++++...+..
T Consensus       202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv  243 (290)
T PF04733_consen  202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV  243 (290)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            555555555555555555555555555555555444444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00028  Score=72.33  Aligned_cols=82  Identities=20%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESME---KYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG---dyeeAle~LqkALkLDPen~eAk~  493 (503)
                      +|.+++-|..+|.+|+.++++..|+..|+++++|.|++++.+.-+|.+++...   .-.++.+.|+++|++||.|..+..
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~  231 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS  231 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence            67889999999999999999999999999999999999999999999988764   467899999999999999999888


Q ss_pred             HHHHH
Q 010717          494 TIHRL  498 (503)
Q Consensus       494 ~La~L  498 (503)
                      .|...
T Consensus       232 lLA~~  236 (287)
T COG4235         232 LLAFA  236 (287)
T ss_pred             HHHHH
Confidence            87654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.80  E-value=3.6e-05  Score=52.97  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      ++|+++|.+|..++++++|+++|+++|+++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45556666666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.80  E-value=0.00056  Score=61.22  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-----CC-----------ChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS-----GD-----------MATMMEVLSTRASCYKEVGEYKKAVADCS  445 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~-----~d-----------dpd~A~aysNrAlcylrLGdyeeALedae  445 (503)
                      ..+...+......++...+++.|.+++.+..-.     ..           ......++..++.+++..+++++|+..++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            344555777778889999999999999764311     10           12344566778888999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       446 kALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      +++.++|.+-.+|..+-.+|..+|++.+|++.|+++.+.
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=6.3e-05  Score=79.12  Aligned_cols=134  Identities=14%  Similarity=0.054  Sum_probs=87.0

Q ss_pred             CCCCcccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHH
Q 010717          360 TDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK  439 (503)
Q Consensus       360 ~d~eaae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyee  439 (503)
                      +|-.++...++-......+++-+.-.-+|.++|..|||++|+..|+-+.+-      +.-.++++.+++.|++-+|.|++
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHHHHHHHHHHHH
Confidence            344444444443333333333344445899999999999999999988753      23357889999999999999999


Q ss_pred             HHHHHHHHHH--------------cC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          440 AVADCSKVLE--------------QD------------DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       440 ALedaekALk--------------Ld------------Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                      |.+...+|-+              ++            -+..+-.+.+|.+++..-.|++|++.|.++|.-+|+...+-.
T Consensus       110 A~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNV  189 (557)
T KOG3785|consen  110 AKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNV  189 (557)
T ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHH
Confidence            9888766421              11            011223344566666666788888888888877776655544


Q ss_pred             HHHHHH
Q 010717          494 TIHRLT  499 (503)
Q Consensus       494 ~La~Lq  499 (503)
                      .++-|.
T Consensus       190 y~ALCy  195 (557)
T KOG3785|consen  190 YMALCY  195 (557)
T ss_pred             HHHHHH
Confidence            444443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.74  E-value=0.0013  Score=55.55  Aligned_cols=102  Identities=26%  Similarity=0.318  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC---CCH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRAS-CYKEVGEYKKAVADCSKVLEQDD---TNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAl-cylrLGdyeeALedaekALkLdP---d~~  455 (503)
                      ....+...+..+...+++.+|++.+.+++...+.      .......... ++...+++++|+..+++++.+++   ...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  167 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALALDPD------PDLAEALLALGALYELGDYEEALELYEKALELDPELNELA  167 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchH
Confidence            3455666677777777777777777777754221      1122222333 67777777777777777777665   345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      ..++.++..+...+++++|+..+.+++++.+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         168 EALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            55556666667777777777777777777776

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.73  E-value=0.00038  Score=62.76  Aligned_cols=72  Identities=19%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS---NRIARS  493 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe---n~eAk~  493 (503)
                      .++++++.++-.+|+.++|+..|+++++.....   ..+++.+|.+|..+|++++|+..|++++...|+   +..++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~   79 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV   79 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence            478899999999999999999999999975433   669999999999999999999999999999888   544443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.72  E-value=7.5e-05  Score=50.78  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      ++++.+|.+|+.++++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            566667777777777777777777777776654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.00016  Score=73.85  Aligned_cols=103  Identities=17%  Similarity=0.226  Sum_probs=81.2

Q ss_pred             HHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717          387 KGVDNQKAG--QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL  464 (503)
Q Consensus       387 lGn~~fkqG--DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A  464 (503)
                      .+.+.+..|  ++.+|...|++..+.      .+....+++.++.|++.+|+|++|.+.+++++..+|.++.++.++..+
T Consensus       171 ~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~  244 (290)
T PF04733_consen  171 EAWVNLATGGEKYQDAFYIFEELSDK------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC  244 (290)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            344555555  599999999996432      233467888999999999999999999999999999999999999999


Q ss_pred             HHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          465 YESMEKY-KLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       465 y~~LGdy-eeAle~LqkALkLDPen~eAk~~L  495 (503)
                      ...+|+. +.+.+.+.++.+.+|+++.+....
T Consensus       245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             HHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             HHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999998 667778888888999997665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.00022  Score=70.42  Aligned_cols=81  Identities=23%  Similarity=0.264  Sum_probs=70.5

Q ss_pred             CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717          375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN  454 (503)
Q Consensus       375 ~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~  454 (503)
                      ...+.+..+|.+.|.++.+++.++.||+-+.+||+|      .|.+..++..||.+|-++.+|++|+++|+++++++|..
T Consensus       128 ~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  128 TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence            344557778889999999999999999999999999      66778899999999999999999999999999999987


Q ss_pred             HHHHHHH
Q 010717          455 VSVLVQR  461 (503)
Q Consensus       455 ~kAlyrl  461 (503)
                      .++.-.+
T Consensus       202 ~ear~~i  208 (271)
T KOG4234|consen  202 REAREAI  208 (271)
T ss_pred             HHHHHHH
Confidence            6554433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.70  E-value=0.00016  Score=77.34  Aligned_cols=105  Identities=13%  Similarity=0.070  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCC
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD------DTN  454 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd------Pd~  454 (503)
                      -.++.++|+++.-.++|+.|+++|++++.|.-+.++....+..++.++..|.-+.++++||.+.++-|++.      -..
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe  314 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE  314 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            44678899999999999999999999998877777777788889999999999999999999999877664      234


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          455 VSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       455 ~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      ..+|+.+|.+|..+++.++|+...+..+++.
T Consensus       315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  315 LRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            7799999999999999999998888777653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.70  E-value=8.1e-05  Score=54.76  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      +++.+|.+|..+|++++|++.|+++++++|++.++...+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4445555555555555555555555555555555444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=6.3e-05  Score=51.71  Aligned_cols=34  Identities=26%  Similarity=0.457  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN  454 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~  454 (503)
                      +.+|+++|.||+.++++++|+.+|+++|+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3578899999999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.67  E-value=0.00034  Score=77.77  Aligned_cols=100  Identities=15%  Similarity=0.186  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ...+|..+|..+...++|.+||++|+.|+.+      ++++..+|..++....++++|+..+..-.+.++++|.....|+
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~  147 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI  147 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence            4568888999999999999999999999988      6677889999999999999999999999999999999988999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      ..+.++..+++|..|+..++...+..
T Consensus       148 ~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  148 GFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999988887776655

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.64  E-value=8.7e-05  Score=85.46  Aligned_cols=113  Identities=14%  Similarity=0.061  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|..|...+++.+|+..|+.|+..      +|.+..+|..++.+|.+.|+|.-|++.++++..++|.+.-+.|
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f  634 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRT------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF  634 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcC------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence            3445666899999999999999999999988      6778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      ..+.+...+|+|++|+..+...++......-.+..+.++
T Consensus       635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~  673 (1238)
T KOG1127|consen  635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES  673 (1238)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            999999999999999999999988766555555555444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.63  E-value=0.00031  Score=75.22  Aligned_cols=106  Identities=14%  Similarity=0.128  Sum_probs=87.2

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-----CCh---h----hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-----DMA---T----MMEVLSTRASCYKEVGEYKKAVADCSK  446 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-----ddp---d----~A~aysNrAlcylrLGdyeeALedaek  446 (503)
                      +..++....+..+|++++|..|+..|..||+++.+-.     ..+   +    ...+...+..||+++++.+-|+....+
T Consensus       174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            3455666778889999999999999999999987521     111   1    122456789999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          447 VLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       447 ALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      +|.++|.+..-|+++|.|+..|.+|.+|.+.+.-+.-+
T Consensus       254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998877665544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.62  E-value=0.00061  Score=75.02  Aligned_cols=97  Identities=15%  Similarity=0.135  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      .-+++.++..|-..|+|++|+++.++||+.      .|...++|...|.+|.+.|++++|.+.++.|..+|..+--.--.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK  267 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSK  267 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence            445677788888888888888888888877      56667888888888888888888888888888888777666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Q 010717          461 RALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALk  483 (503)
                      .+..+.+.+++++|++.+..-.+
T Consensus       268 ~aKy~LRa~~~e~A~~~~~~Ftr  290 (517)
T PF12569_consen  268 CAKYLLRAGRIEEAEKTASLFTR  290 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhcC
Confidence            67777788888888877754433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.59  E-value=0.00016  Score=53.17  Aligned_cols=43  Identities=19%  Similarity=0.171  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL  464 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A  464 (503)
                      .++..++.+|.++|++++|++.|+++++++|+++.+++.++.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            4788899999999999999999999999999999999998753

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.58  E-value=0.00048  Score=76.97  Aligned_cols=119  Identities=15%  Similarity=0.022  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------Ch--------------hhHHHHHHHHHHHHHcC
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-------------MA--------------TMMEVLSTRASCYKEVG  435 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-------------dp--------------d~A~aysNrAlcylrLG  435 (503)
                      .+...+..+...||..+|..++.+|++..+...+             +.              -...+|...+.....++
T Consensus       586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld  665 (913)
T KOG0495|consen  586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD  665 (913)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh
Confidence            3444567777788888888877777765332110             11              12345666666677799


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          436 EYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       436 dyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +.++|++.|++||+..|+..+.|+.+|+++..+++.+.|.+.|...+++-|...-....|.+|++.
T Consensus       666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk  731 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK  731 (913)
T ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988887777777654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.58  E-value=0.00018  Score=80.79  Aligned_cols=100  Identities=12%  Similarity=0.116  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....|+..|.++.+.+++..|+++|..++.+      +|+.++.|+|++..|+++++-.+|...+++|++.+-.+.+.|.
T Consensus       518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE  591 (777)
T KOG1128|consen  518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE  591 (777)
T ss_pred             chhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence            5678999999999999999999999999998      7889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      +.-.+....+++++|++.|.+.+.+.
T Consensus       592 Nymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  592 NYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             chhhhhhhcccHHHHHHHHHHHHHhh
Confidence            99999999999999999999998864

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.55  E-value=0.0029  Score=53.50  Aligned_cols=95  Identities=23%  Similarity=0.377  Sum_probs=65.4

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Q 010717          390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-NVSVLVQRALLYESM  468 (503)
Q Consensus       390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd-~~kAlyrlA~Ay~~L  468 (503)
                      .++..+++++|+..|.+++.+.+.   .......+..+...+...+++++|+..+.+++++.+. ....+..++.++...
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence            677777777777777777553110   0134455555556566777777777777777777777 577777777777777


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 010717          469 EKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       469 GdyeeAle~LqkALkLDPe  487 (503)
                      +++++|+..+.+++.+.|.
T Consensus       216 ~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         216 GKYEEALEYYEKALELDPD  234 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcc
Confidence            7777777777777777776

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.00096  Score=73.76  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ...+++-.-.++.+..+|++|++.-++-..+       .......+..+.|++++++.++|+..++   -+++.+.+.+.
T Consensus        45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-------~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~  114 (652)
T KOG2376|consen   45 DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-------LVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE  114 (652)
T ss_pred             cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-------hhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence            3556666666777888888888544332211       1122333789999999999999999998   56777788999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      .+|++++.+++|++|+..|+..++-+-++.+
T Consensus       115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen  115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            9999999999999999999999887665543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=0.00021  Score=80.75  Aligned_cols=120  Identities=33%  Similarity=0.499  Sum_probs=106.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE--VGEYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr--LGdyeeALedaekALkLdPd~~kA  457 (503)
                      ++..++..++..+..++|.+|...|..++.+.|+  +....+.++.+++.||+.  +++|.+++.+|+.|+...|...++
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~  129 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA  129 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence            5667888999999999999999999999999774  356788899999999977  568999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++++.+|..+++++-|++.+.-...++|.++.+-..+.+++.+
T Consensus       130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l  173 (748)
T KOG4151|consen  130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL  173 (748)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999997776655555544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.50  E-value=0.00023  Score=48.37  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN  454 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~  454 (503)
                      +++|..+|.+++++|++++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3578888999999999999999999999988864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.49  E-value=0.00074  Score=74.35  Aligned_cols=72  Identities=24%  Similarity=0.324  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      ..+++.+|.+|..+|++++|++++++||++.|..++.|+.+|.+|.+.|++++|.++++++..+|..+.-+-
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiN  265 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYIN  265 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHH
Confidence            456688999999999999999999999999999999999999999999999999999999999999886543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.47  E-value=0.0016  Score=63.89  Aligned_cols=104  Identities=14%  Similarity=0.082  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--NVSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~~kA  457 (503)
                      ..+-.+.+++.+...|+|.||...|++++.=     --.++..++..++...+.++++.+|...+++..+.+|.  .+..
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~  162 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG  162 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence            3556778999999999999999999999852     13456788899999999999999999999999999874  4778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      ++.++.+|..+|++++|...|+.++.-.|+-
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            8899999999999999999999999998864

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.47  E-value=0.00013  Score=51.58  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=28.0

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010717          444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAE  476 (503)
Q Consensus       444 aekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle  476 (503)
                      |+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            678888888888888888888888888888863

>PRK10941 hypothetical protein; Provisional

Probab=97.43  E-value=0.0013  Score=66.87  Aligned_cols=82  Identities=16%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ....+.|+=.+|++.+++++|+.+++.++.++|+++.-+.-+|.+|.+++.+..|+.+|+..++..|+++.+.....+++
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999988776666665


Q ss_pred             hh
Q 010717          500 KM  501 (503)
Q Consensus       500 kl  501 (503)
                      .+
T Consensus       260 ~l  261 (269)
T PRK10941        260 SI  261 (269)
T ss_pred             HH
Confidence            44

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.42  E-value=0.0016  Score=74.19  Aligned_cols=105  Identities=14%  Similarity=0.062  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--------  453 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--------  453 (503)
                      ..+..+|..+...|++++|+.+|++++++....+.......++.+++.+++..|++++|++.+++++.+...        
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            345667777888888888888888888876654443444556778888888889999998888888876321        


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      ....+..+|.+++..|++++|.+.+++++.+..
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            123455678888888888888888888877643

>PRK15331 chaperone protein SicA; Provisional

Probab=97.41  E-value=0.00083  Score=63.96  Aligned_cols=84  Identities=11%  Similarity=-0.006  Sum_probs=73.8

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      ..+..+..+.+|.-++..|++++|...|+-...+++.+.+.++.+|.|+..+++|++|++.|-.+..++++++.......
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            34556677778999999999999999999999999999999999999999999999999999999999998876666666


Q ss_pred             HHHh
Q 010717          497 RLTK  500 (503)
Q Consensus       497 ~Lqk  500 (503)
                      +|.-
T Consensus       113 qC~l  116 (165)
T PRK15331        113 QCQL  116 (165)
T ss_pred             HHHH
Confidence            5543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.39  E-value=0.00042  Score=73.22  Aligned_cols=106  Identities=15%  Similarity=0.134  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----DTN-  454 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----Pd~-  454 (503)
                      .+.+..+++.+.-.+.|+++++.|++|+.+.....|......++..++..+-++.|+++|+-+..+|.++-     .+| 
T Consensus       122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~  201 (518)
T KOG1941|consen  122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS  201 (518)
T ss_pred             chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence            35666789999999999999999999999988777777778899999999999999999999999999873     122 


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          455 ----VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       455 ----~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                          .-++|+++.+|..+|+.-+|.++++++.+|.-
T Consensus       202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence                23678899999999999999999999988753

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.38  E-value=0.001  Score=62.00  Aligned_cols=71  Identities=13%  Similarity=0.162  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA  491 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eA  491 (503)
                      ...++..|...++.|+|++|++.++.+....|..   .++.+.++-+|+..++|++|+..+++-++|+|.++.+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            4667789999999999999999999999988754   6799999999999999999999999999999998654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.0023  Score=70.90  Aligned_cols=107  Identities=17%  Similarity=0.169  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH------------------------HHhcCC-ChhhHHHHHHHHHHHHHcCCH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVIL------------------------LEKSGD-MATMMEVLSTRASCYKEVGEY  437 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL------------------------~pk~~d-dpd~A~aysNrAlcylrLGdy  437 (503)
                      .+...+.++|+.++|++|++.|+..++-                        .+..+. ..+..+.++|+|.+++..|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            5667899999999999999999887521                        111111 234678899999999999999


Q ss_pred             HHHHHHHHHHHHcC-------C---CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          438 KKAVADCSKVLEQD-------D---TN-----VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       438 eeALedaekALkLd-------P---d~-----~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      .+|++.+++++++.       .   +.     ......++.+|..+|+-++|...|...++.+|.+.
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            99999999995542       1   11     12566789999999999999999999999998774

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.36  E-value=0.002  Score=72.21  Aligned_cols=113  Identities=10%  Similarity=0.001  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      .++.-.+....+++.++|+++++++|+.      -|++..+|..+|.++-++++.+.|.+.|...++..|..+..|+.++
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa  726 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA  726 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence            4444555556678888999999999887      5678899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+-...++.-+|...|+++...+|++.....+..+++..
T Consensus       727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR  765 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR  765 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence            999999999999999999999999998877776666543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.32  E-value=0.004  Score=61.25  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=78.7

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHcCC------CCH
Q 010717          390 DNQKAGQYADAIKWLSWAVILLEKSG-DMATMMEVLSTRASCYKEVGEYK-------KAVADCSKVLEQDD------TNV  455 (503)
Q Consensus       390 ~~fkqGDY~eAIk~YeKALeL~pk~~-ddpd~A~aysNrAlcylrLGdye-------eALedaekALkLdP------d~~  455 (503)
                      .+-....+++|++.|..||....-.. +.-..+.++..+|.+|..+++.+       +|++.|+++++...      +..
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            34456689999999999987655332 33356888899999999999954       45555555554432      226


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR--IARSTIHRL  498 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~--eAk~~La~L  498 (503)
                      ..+|.+|.+++.+|++++|+++|.+++..--...  .+....+++
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ  210 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence            7899999999999999999999999998755444  444444443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.32  E-value=0.0035  Score=61.45  Aligned_cols=103  Identities=15%  Similarity=0.011  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV-SVLVQR  461 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~-kAlyrl  461 (503)
                      ....++..++..+++++|+..+++++..   ..++.....+-.+++.+.+.++.+++|+..++..-.  +.|. .....+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elr  165 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELR  165 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHh
Confidence            3466789999999999999999999965   122334455667899999999999999998876543  3343 345667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          462 ALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       462 A~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      |.+|...|+-++|+..|+++++.++....
T Consensus       166 GDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         166 GDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            99999999999999999999999855544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.30  E-value=0.0018  Score=70.22  Aligned_cols=104  Identities=14%  Similarity=0.058  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+--+...|..+..+++.++|++.|+++++.....  .....-+++.++.|++.+.+|++|.+++.++++.. .|.++.|
T Consensus       266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y  342 (468)
T PF10300_consen  266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY  342 (468)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence            35557778999999999999999999998642222  23445678899999999999999999999999865 6877665


Q ss_pred             H--HHHHHHHcCCH-------HHHHHHHHHHHHhCC
Q 010717          460 Q--RALLYESMEKY-------KLGAEDLRTVLKIDP  486 (503)
Q Consensus       460 r--lA~Ay~~LGdy-------eeAle~LqkALkLDP  486 (503)
                      .  .|.||..+++.       ++|.+.|+++-.+-.
T Consensus       343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            5  58999999999       888888888766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.28  E-value=0.0011  Score=52.03  Aligned_cols=46  Identities=22%  Similarity=0.241  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +.+|.+|.+++++++|++|+++++.+|+++|+|.++......+++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~   47 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK   47 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            4578888889999999999999999999999988887777776654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.0014  Score=69.42  Aligned_cols=87  Identities=20%  Similarity=0.262  Sum_probs=71.6

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 010717          389 VDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESM  468 (503)
Q Consensus       389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~L  468 (503)
                      ..+....||..|+.+++-.+.+..+   +.+...+|  ++.|++++|+|++|+..|+.+..-+..+.+...++|-|++.+
T Consensus        30 edfls~rDytGAislLefk~~~~~E---EE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL  104 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDRE---EEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL  104 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchh---hhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH
Confidence            4567889999999999988866332   22334444  699999999999999999999887777899999999999999


Q ss_pred             CCHHHHHHHHHH
Q 010717          469 EKYKLGAEDLRT  480 (503)
Q Consensus       469 GdyeeAle~Lqk  480 (503)
                      |.|.+|...-.+
T Consensus       105 g~Y~eA~~~~~k  116 (557)
T KOG3785|consen  105 GQYIEAKSIAEK  116 (557)
T ss_pred             HHHHHHHHHHhh
Confidence            999999876554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.27  E-value=0.0015  Score=61.06  Aligned_cols=62  Identities=18%  Similarity=0.175  Sum_probs=57.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          427 RASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       427 rAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      -+..+.+-|+++.|++.|.++|.+.|..+.+|.+++++|...++.++|++++.++|++.-..
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            46677789999999999999999999999999999999999999999999999999996543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.26  E-value=0.00084  Score=77.67  Aligned_cols=128  Identities=15%  Similarity=0.131  Sum_probs=100.5

Q ss_pred             HhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------C-----------------h
Q 010717          369 LEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-------------M-----------------A  418 (503)
Q Consensus       369 LEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-------------d-----------------p  418 (503)
                      +.+++..+.  .+.++..+|..|...-|...|.++|.+|.+++...-.             +                 .
T Consensus       482 i~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~  559 (1238)
T KOG1127|consen  482 IRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF  559 (1238)
T ss_pred             HHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence            344433333  5778888999998888889999999999888542110             0                 0


Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          419 TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       419 d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      .....|..||..|++.+++.+|+.+++.+++.+|.+...|.-+|.+|...|+|.-|+..|.++..++|.+...+.....+
T Consensus       560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~  639 (1238)
T KOG1127|consen  560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM  639 (1238)
T ss_pred             HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence            11223556888899999999999999999999999999999999999999999999999999999999986655444443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.25  E-value=0.00043  Score=72.83  Aligned_cols=65  Identities=22%  Similarity=0.342  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          424 LSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       424 ysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      +-.+|.-|+++|.|++||.+|.+++.++|.++..+.++|.+|+.+++|..|..+|..++.||...
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y  164 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY  164 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            45688999999999999999999999999999999999999999999999999999999998644

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.0021  Score=71.73  Aligned_cols=104  Identities=12%  Similarity=0.103  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR  461 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl  461 (503)
                      ..+.+.+...|+.++|..++++|...+..++.+..+.+++.+..+++.||+.+.++++|++++++|-+.+|..+-..+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            34667788899999999999999999998877666667788999999999999999999999999999999988777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          462 ALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       462 A~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      -.+....+.-++|+.++.+.+.+.
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhh
Confidence            777777888899999988777654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.18  E-value=0.0057  Score=69.73  Aligned_cols=106  Identities=15%  Similarity=-0.046  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM--ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-----  453 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd--pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd-----  453 (503)
                      +..+..++.+++..|++++|.+++++++++.......  +....++..++.+++..|++++|++.+++++.+...     
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  610 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ  610 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence            3455677889999999999999999999987654321  223455678899999999999999999999886432     


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      ...++..++.++...|++++|.+.+++++.+..
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            245666789999999999999999999988744

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.15  E-value=0.002  Score=64.53  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=71.3

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                      +...+.+++.||..|-.+|-..-|.-|+.++|.+.|+.+.++..+|.-|...++|+.|.+.|..++++||...-+..
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l  137 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL  137 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999998765543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.12  E-value=0.0019  Score=71.18  Aligned_cols=73  Identities=12%  Similarity=0.028  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      +..+..+|..+...+++++|+..|++|+++      .+ .+.+|..+|.++...|++++|++.|++|+.++|.++..+..
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~  492 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDL------EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI  492 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence            567777888999999999999999999999      44 36899999999999999999999999999999998864443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.09  E-value=0.0039  Score=63.38  Aligned_cols=77  Identities=14%  Similarity=0.024  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 010717          424 LSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTIHR  497 (503)
Q Consensus       424 ysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~La~  497 (503)
                      +++.|.-+++.|+|.+|...|..-|+..|+.   +.++|-||.+++.+|+|++|...|..+++-.|++   +++...|..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999876   6799999999999999999999999999999987   455555555


Q ss_pred             HHh
Q 010717          498 LTK  500 (503)
Q Consensus       498 Lqk  500 (503)
                      ++.
T Consensus       224 ~~~  226 (262)
T COG1729         224 SLG  226 (262)
T ss_pred             HHH
Confidence            543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.08  E-value=0.00096  Score=73.89  Aligned_cols=104  Identities=15%  Similarity=0.076  Sum_probs=89.4

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 010717          390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESME  469 (503)
Q Consensus       390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG  469 (503)
                      .+...|+-..|++++..|+.+.|.     ....-+.+++.+.++-+-.-+|-..+.++|.+.-..+-.+|.+|.+|..++
T Consensus       616 ywr~~gn~~~a~~cl~~a~~~~p~-----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~  690 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALNLAPL-----QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK  690 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhccChh-----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence            344578999999999999977332     123457789999999998899999999999999777889999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          470 KYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       470 dyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +.++|++.|+.+++++|++.+++..|..+
T Consensus       691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  691 NISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             hhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            99999999999999999999998877654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.07  E-value=0.00096  Score=45.56  Aligned_cols=31  Identities=19%  Similarity=0.428  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      ++|+.+|.+|..+|++++|+++|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455555555555555555555555555555

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.00  E-value=0.0011  Score=45.23  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDT  453 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd  453 (503)
                      .+|..+|.+|..+|++++|++++++|++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57778888888888888888888888888774

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.0013  Score=68.29  Aligned_cols=96  Identities=19%  Similarity=0.177  Sum_probs=79.0

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ----DDTN  454 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL----dPd~  454 (503)
                      ..++.+.+.|...|+.++|++|++.|+.|++.      .....-+-+++++|+++.++|+.|+++..+.++.    +|+.
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqv------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl  215 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQV------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL  215 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhh------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence            35778999999999999999999999999988      3334467788999999999999999999887753    2321


Q ss_pred             -------------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717          455 -------------------------VSVLVQRALLYESMEKYKLGAEDLRT  480 (503)
Q Consensus       455 -------------------------~kAlyrlA~Ay~~LGdyeeAle~Lqk  480 (503)
                                               .+++..++.+++..++++.|.+.+..
T Consensus       216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD  266 (459)
T KOG4340|consen  216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD  266 (459)
T ss_pred             CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence                                     24566679999999999999988754

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.98  E-value=0.002  Score=70.30  Aligned_cols=123  Identities=15%  Similarity=0.091  Sum_probs=97.4

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG----DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE-----  449 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~----ddpd~A~aysNrAlcylrLGdyeeALedaekALk-----  449 (503)
                      ..+..+..+.+.+|..|+|..|++.+...=.. ...+    .+-....+|+|+|.++++++.|.-+..+|.+||+     
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~-~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q  316 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH-KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ  316 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccc-cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999987543211 1111    0112455678999999999999999999999995     


Q ss_pred             c----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          450 Q----DD---------TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       450 L----dP---------d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +    .|         ..-+.+|+.|..|...|+.-+|.++|+++.+..-.++.+...|++|..+.
T Consensus       317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            1    11         12458999999999999999999999999999999999999999987653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.95  E-value=0.006  Score=68.41  Aligned_cols=64  Identities=11%  Similarity=0.074  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      ..+|..+...+...|+++.|.+.++++++++|++...|..+..+|...|++++|.+.++++.+.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            3456666666667777777777777777788877777778888888888888888888776654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0013  Score=66.34  Aligned_cols=76  Identities=21%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          424 LSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       424 ysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      +-.-+.+|+.-++|..|+..|.++|.++|..+..+-+++.||+++++++.+.+.++++++++|+.+..+..+..+.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            3445778888899999999999999999999999999999999999999999999999999999888777776554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.011  Score=60.63  Aligned_cols=79  Identities=14%  Similarity=0.140  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          422 EVLSTRASCYKEV----GEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       422 ~aysNrAlcylrL----GdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      ..+..+|..|+.+    +++.+|.-.|+..-...+-.+..+..++.|++.+++|++|...++++|..++.+++....+..
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV  249 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            4455566666542    346666666666555445556667777888888888888888888888888888877766665


Q ss_pred             HHh
Q 010717          498 LTK  500 (503)
Q Consensus       498 Lqk  500 (503)
                      +-.
T Consensus       250 ~a~  252 (299)
T KOG3081|consen  250 LAL  252 (299)
T ss_pred             HHH
Confidence            543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.87  E-value=0.00092  Score=47.27  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 010717          403 WLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA  442 (503)
Q Consensus       403 ~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALe  442 (503)
                      +|++||++      +|.++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            48999999      77889999999999999999999974

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0052  Score=64.47  Aligned_cols=75  Identities=20%  Similarity=0.252  Sum_probs=64.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN----VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~----~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      ...+.-|-.-|.-|++.++|..|+..|.+.|+..-.+    +..|.++|.|.+.+|+|..|+.++.++++++|.+..+.
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~  156 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAY  156 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence            3466778888999999999999999999999875333    44677899999999999999999999999999986553

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.76  E-value=0.0025  Score=42.81  Aligned_cols=33  Identities=21%  Similarity=0.305  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      +++|++|.+|..+|++++|++.|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367777777777777777777777777777753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.69  E-value=0.044  Score=58.56  Aligned_cols=113  Identities=18%  Similarity=0.161  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-NVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd-~~kAl  458 (503)
                      ++..+...|...+-.|||.+|.+...++-+.      .+....+|..-+.+.-++|+++.|-.++.++-++.++ ..-+.
T Consensus        83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~  156 (400)
T COG3071          83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEH------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE  156 (400)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH
Confidence            3444555555555566666666655554433      1112233333444445555555555555555555322 23344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +.++.++...++|+.|.+.+.++++..|.++++.....++
T Consensus       157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~  196 (400)
T COG3071         157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRA  196 (400)
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            4555555555555555555555555555555555544444

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.69  E-value=0.019  Score=68.42  Aligned_cols=62  Identities=13%  Similarity=0.056  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQD-DTNVSVLVQRALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLd-Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALk  483 (503)
                      ..|..+..+|.+.|++++|++.|++..+.. ..+...|..+..+|...|++++|++.|+++.+
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345555555555555555555555544321 11334455555555555555555555555543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.68  E-value=0.019  Score=54.79  Aligned_cols=104  Identities=14%  Similarity=0.015  Sum_probs=83.1

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---C-
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT---N-  454 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd---~-  454 (503)
                      .....+..+|+-|++.||+++|++.|.++.+.+-   .......++.++..+.+..+++.....+++++..+-..   | 
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~  110 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE  110 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence            3556788999999999999999999999887632   23456788889999999999999999999998766422   2 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          455 --VSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       455 --~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                        .+.....|..++..++|.+|.+.|..++.-.
T Consensus       111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  111 RRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence              2234456888899999999999998776443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.67  E-value=0.0073  Score=51.78  Aligned_cols=61  Identities=13%  Similarity=0.171  Sum_probs=34.0

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHhh
Q 010717          441 VADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN--RIARSTIHRLTKM  501 (503)
Q Consensus       441 LedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen--~eAk~~La~Lqkl  501 (503)
                      +..+++.++.+|++..+.|.+|.+|+..|++++|++.|.++++.+++.  ..+++.+-.+.++
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~   70 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL   70 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence            445556666666666666666666666666666666666666665543  4445555444443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.029  Score=56.83  Aligned_cols=112  Identities=16%  Similarity=0.183  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC------
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV-GEYKKAVADCSKVLEQDDT------  453 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL-GdyeeALedaekALkLdPd------  453 (503)
                      +...+..+..+|++.+..+|+.++++||++.-..+.-..-+..+..++.+|-.. .++++||.+|+++-+....      
T Consensus        73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen   73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            333444455556777999999999999998654433223344466788887654 8899999999998876422      


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      -.+.++..+..-..+++|.+|++.|+++.+-.-+|...+
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK  191 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK  191 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence            134555667777788999999999999887766664443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.58  E-value=0.01  Score=63.11  Aligned_cols=105  Identities=14%  Similarity=0.129  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-C---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-D---MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD----  451 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-d---dpd~A~aysNrAlcylrLGdyeeALedaekALkLd----  451 (503)
                      +.+.+..+|..+-..+||++|+-+..+|+++..... +   ......+++.++..+..+|++-+|.++|+++.++.    
T Consensus       161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G  240 (518)
T KOG1941|consen  161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG  240 (518)
T ss_pred             eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence            456788899999999999999999999999987654 2   23456678889999999999999999999998774    


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          452 --DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       452 --Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                        +-....+..+|.+|..+++.|.|...|+.+...
T Consensus       241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence              334556677899999999999999999998765

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.57  E-value=0.072  Score=53.72  Aligned_cols=110  Identities=19%  Similarity=0.172  Sum_probs=82.3

Q ss_pred             CcchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHh-c---CC----ChhhHHHHHHHHHHHHHcCCHHH---HHHHH
Q 010717          377 AGVTGAAAKNKGVDNQKAG-QYADAIKWLSWAVILLEK-S---GD----MATMMEVLSTRASCYKEVGEYKK---AVADC  444 (503)
Q Consensus       377 ~~~~A~alk~lGn~~fkqG-DY~eAIk~YeKALeL~pk-~---~d----dpd~A~aysNrAlcylrLGdyee---ALeda  444 (503)
                      ....+..+++.|...++++ +|++|+.++++|+++++. .   ..    ......++..++.+|+..+.++.   |+...
T Consensus        31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l  110 (278)
T PF08631_consen   31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNAL  110 (278)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            3457888999999999999 999999999999999754 1   11    13456778889999999888654   33444


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       445 ekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      +.+-...|+.+..++..=.++....+.+++.+.+++++.--.
T Consensus       111 ~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  111 RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            444444577777775555555558889999999999888644

It is also involved in sporulation [].

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.56  E-value=0.025  Score=67.42  Aligned_cols=62  Identities=8%  Similarity=0.042  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          423 VLSTRASCYKEVGEYKKAVADCSKVLEQD-DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       423 aysNrAlcylrLGdyeeALedaekALkLd-Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      .|..+..+|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|++.|+++.+.
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            34444444555555555555555555443 223344444455555555555555555555443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.53  E-value=0.0037  Score=38.94  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      +++++|.+|+.++++++|+.+|+++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            445555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.019  Score=59.90  Aligned_cols=86  Identities=17%  Similarity=0.078  Sum_probs=74.8

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 010717          391 NQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK  470 (503)
Q Consensus       391 ~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd  470 (503)
                      +.+..+|.+||+++.--.+.      .|.....++.++.||++..+|+.|...|++.-.+.|...+..+..++.++..+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i   93 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELER------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI   93 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence            36788999999998877765      444567889999999999999999999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHH
Q 010717          471 YKLGAEDLRTVL  482 (503)
Q Consensus       471 yeeAle~LqkAL  482 (503)
                      +.+|++....++
T Consensus        94 ~ADALrV~~~~~  105 (459)
T KOG4340|consen   94 YADALRVAFLLL  105 (459)
T ss_pred             cHHHHHHHHHhc
Confidence            999998765443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.51  E-value=0.015  Score=58.73  Aligned_cols=93  Identities=10%  Similarity=-0.070  Sum_probs=41.2

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 010717          389 VDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE-VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYES  467 (503)
Q Consensus       389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr-LGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~  467 (503)
                      +...+.+..+.|.+.|.+|++.      ......+|...|...++ .++.+.|...|+.+++..|.+...++....-+..
T Consensus         9 ~~~~r~~g~~~aR~vF~~a~~~------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    9 RFMRRTEGIEAARKVFKRARKD------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHhCChHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            3333444445555555555411      11223444444444334 2333335555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHHhCCC
Q 010717          468 MEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       468 LGdyeeAle~LqkALkLDPe  487 (503)
                      +++.+.|...|++++..-+.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPK  102 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSC
T ss_pred             hCcHHHHHHHHHHHHHhcCc
Confidence            55555555555555544433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.46  E-value=0.035  Score=51.89  Aligned_cols=82  Identities=12%  Similarity=0.115  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          421 MEVLSTRASCYKEVGE---YKKAVADCSKVLE-QDDT-NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       421 A~aysNrAlcylrLGd---yeeALedaekALk-LdPd-~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                      .+..++++.|+.+..+   ..+.+..++..++ -+|. ..+.+|.++..++++|+|++++.+++..|+.+|+|.++...-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            4566778888877554   5667888888886 4443 456889999999999999999999999999999999998887


Q ss_pred             HHHHhhh
Q 010717          496 HRLTKMV  502 (503)
Q Consensus       496 a~LqklL  502 (503)
                      ..+++.+
T Consensus       112 ~~ied~i  118 (149)
T KOG3364|consen  112 ETIEDKI  118 (149)
T ss_pred             HHHHHHH
Confidence            7776653

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.39  E-value=0.078  Score=54.12  Aligned_cols=107  Identities=14%  Similarity=0.048  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----DTNVS  456 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----Pd~~k  456 (503)
                      ..|...+..|...++|++|..++.+|++-.+.+..--+-+..|-..+....++..+.|++.+|+++..+.     |+.+-
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            3344445555667788888888888887655544344556667777777788888888888888888773     55555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      .-+.++.-.....+.++|+..|++++.+-.++
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            55555555566668888888888888775544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.39  E-value=0.027  Score=50.38  Aligned_cols=64  Identities=17%  Similarity=0.111  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      ...++..++..+...+++++|+.++++++.+      +|.+-.+|..+-.||...|++.+|++.|+++..
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4567778888899999999999999999999      777889999999999999999999999998864

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.35  E-value=0.011  Score=61.93  Aligned_cols=78  Identities=22%  Similarity=0.167  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ++......+....+.|+.+.|.++|+.|+.+      .|+..+++..+|...-.-++.-+|-++|-+||.++|.+.+|+.
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            3444445555566666666666666666666      4445556666666665556666666666666666666666666


Q ss_pred             HHHH
Q 010717          460 QRAL  463 (503)
Q Consensus       460 rlA~  463 (503)
                      +++.
T Consensus       189 nR~R  192 (472)
T KOG3824|consen  189 NRAR  192 (472)
T ss_pred             hhhc
Confidence            6543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.34  E-value=0.024  Score=57.56  Aligned_cols=73  Identities=14%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      -+..|++-|...++.|++++|+..|+++...+|..   .++.+.++.++++.++|++|+..+++-+++.|.++.+.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            45678889999999999999999999999998754   67999999999999999999999999999999986653

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.28  E-value=0.066  Score=54.32  Aligned_cols=106  Identities=18%  Similarity=0.143  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN------  454 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~------  454 (503)
                      ++.+...++.|-..+++..|=..|.+|.++.-+.+...+-+..|...+.||.+. +.++|+..++++|++.-+-      
T Consensus        34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~a  112 (288)
T KOG1586|consen   34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMA  112 (288)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHH
Confidence            555666788888899999999999999998777777777889999999998554 9999999999999986432      


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Q 010717          455 VSVLVQRALLYESM-EKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       455 ~kAlyrlA~Ay~~L-GdyeeAle~LqkALkLDPe  487 (503)
                      ++.+..+|.+|..- .++++|+.+|+.+-+..-.
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            34566789998765 9999999999998776543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.26  E-value=0.072  Score=56.95  Aligned_cols=99  Identities=15%  Similarity=0.064  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      .......+..+...+++++|.++.+++++..    -++   +++. +.-| ++.+++++=++.+++.++.+|+++..++.
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----~D~---~L~~-~~~~-l~~~d~~~l~k~~e~~l~~h~~~p~L~~t  333 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQ----WDP---RLCR-LIPR-LRPGDPEPLIKAAEKWLKQHPEDPLLLST  333 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc----cCh---hHHH-HHhh-cCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence            4455567778889999999999999998651    122   2222 2222 46788888888899999999998988888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      +|..|+..+.|.+|.++|+.+++..|..
T Consensus       334 LG~L~~k~~~w~kA~~~leaAl~~~~s~  361 (400)
T COG3071         334 LGRLALKNKLWGKASEALEAALKLRPSA  361 (400)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence            9999999999999999999988888754

>smart00028 TPR Tetratricopeptide repeats

Probab=96.25  E-value=0.0069  Score=37.68  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDT  453 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd  453 (503)
                      .++.++|.|+..++++++|+..++++++++|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46778889999999999999999999888775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.23  E-value=0.02  Score=44.94  Aligned_cols=44  Identities=27%  Similarity=0.329  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY  465 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay  465 (503)
                      +.++.+|..++++|+|++|+++++.+|+++|++.++.-.+..+-
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            35677999999999999999999999999999988876655543

>PLN03077 Protein ECB2; Provisional

Probab=96.23  E-value=0.064  Score=61.68  Aligned_cols=107  Identities=8%  Similarity=0.025  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      .+..+-..+.+.|++++|+++|++..+..   +-.| +...|..+..++.+.|++++|++.+++. .+.|+ ...|..+-
T Consensus       591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl  664 (857)
T PLN03077        591 TFISLLCACSRSGMVTQGLEYFHSMEEKY---SITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALL  664 (857)
T ss_pred             cHHHHHHHHhhcChHHHHHHHHHHHHHHh---CCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHH
Confidence            34444556777888888888887776331   1122 2356666777777777777777776653 13332 33333333


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                      .++...++.+.|....+++++++|++......|
T Consensus       665 ~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll  697 (857)
T PLN03077        665 NACRIHRHVELGELAAQHIFELDPNSVGYYILL  697 (857)
T ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Confidence            344455555555555555555555554443333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.21  E-value=0.016  Score=65.10  Aligned_cols=66  Identities=11%  Similarity=0.041  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       423 aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      .|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|+++.|...++++++++|++..
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~  529 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN  529 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence            34445555555555555555554321 122 3445556666677777777777777777777776543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.17  E-value=0.0063  Score=61.29  Aligned_cols=58  Identities=19%  Similarity=0.238  Sum_probs=40.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          431 YKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       431 ylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      ..+.++.+.|.+.|.+++++.|+|...|+|+|....+.|+++.|.+.|++.|+++|++
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3455666677777777777777777777777777777777777777777777777665

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.16  E-value=0.059  Score=45.89  Aligned_cols=62  Identities=16%  Similarity=0.273  Sum_probs=48.7

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717          390 DNQKAGQYADAIKWLSWAVILLEKSGDMA---TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddp---d~A~aysNrAlcylrLGdyeeALedaekALkLd  451 (503)
                      ...+.+||.+|++.+.+..+.........   ....++.+++.++...|++++|++.+++++++.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            45788999999999999988866544333   345667788888888999999999998888775

>PRK10941 hypothetical protein; Provisional

Probab=96.14  E-value=0.054  Score=55.31  Aligned_cols=82  Identities=13%  Similarity=-0.017  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+.++=..|.+.++|+.|+.+.+..+.+      .|++..-+-.||.+|.+++.+..|+.|++..++..|+.+.+..
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            3445667778899999999999999999999      5566778888999999999999999999999999999998877


Q ss_pred             HHHHHHHH
Q 010717          460 QRALLYES  467 (503)
Q Consensus       460 rlA~Ay~~  467 (503)
                      .+.++...
T Consensus       254 ik~ql~~l  261 (269)
T PRK10941        254 IRAQIHSI  261 (269)
T ss_pred             HHHHHHHH
Confidence            76665443

>PLN03077 Protein ECB2; Provisional

Probab=96.08  E-value=0.035  Score=63.78  Aligned_cols=104  Identities=11%  Similarity=0.005  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD--TNVSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP--d~~kA  457 (503)
                      ....|..+...|.+.|+.++|+++|++.++.    +-.|+..+ |..+-.++.+.|++++|++.++...+...  -+.+.
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~  627 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH  627 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence            4667888899999999999999999997753    22444444 44444567789999999999999884432  24578


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      |..+..+|.+.|++++|.+.+++. .+.|+..
T Consensus       628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~  658 (857)
T PLN03077        628 YACVVDLLGRAGKLTEAYNFINKM-PITPDPA  658 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHH
Confidence            888999999999999999999875 3566543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.06  E-value=0.011  Score=39.64  Aligned_cols=32  Identities=22%  Similarity=0.527  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717          423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTN  454 (503)
Q Consensus       423 aysNrAlcylrLGdyeeALedaekALkLdPd~  454 (503)
                      +++++|.|+.++|++++|++.++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57788888888888999999998888888763

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=0.075  Score=54.24  Aligned_cols=105  Identities=16%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC--CCC
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL----EQD--DTN  454 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL----kLd--Pd~  454 (503)
                      +.....++-......+.++|+.+|++++.+.+.........+++...+.++.++++|++|-..+.+-.    +.+  +..
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence            44445555566667788889999999988877665555566778888888888988888877776533    222  333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          455 VSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       455 ~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      -++++..-.+|....+|..|..++++.-++.
T Consensus       190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            4555556666677779999999988866653

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.03  E-value=0.054  Score=48.75  Aligned_cols=96  Identities=14%  Similarity=0.105  Sum_probs=75.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCH
Q 010717          387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-----------EYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-----------dyeeALedaekALkLdPd~~  455 (503)
                      ++..++++|++-+|+++.++.+....+   +.....++..-|.+++++.           -+-.+++.+.++..+.|..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~---~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A   78 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE---DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA   78 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC---CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence            567899999999999999999876332   2222245555566654432           24568899999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      ..+|.+|.-+-....|++++...+++|.+.
T Consensus        79 ~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   79 HSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999998763

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.96  E-value=0.11  Score=52.06  Aligned_cols=108  Identities=12%  Similarity=0.025  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhc---------------------------CCChhhHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVI-LLEKS---------------------------GDMATMMEVLSTRASCY  431 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALe-L~pk~---------------------------~ddpd~A~aysNrAlcy  431 (503)
                      ........+..+..+|+..+|+..++..++ .....                           ......+.++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            355677788999999999999999988887 22211                           01234566677777777


Q ss_pred             HHc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 010717          432 KEV------GEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKY-----------------KLGAEDLRTVLKIDPS  487 (503)
Q Consensus       432 lrL------GdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdy-----------------eeAle~LqkALkLDPe  487 (503)
                      ..+      +.++++++.|+++++++|.+.++++..|..+..+=+.                 ..|++.|.+++.+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            777      8899999999999999999999999988887664221                 3489999999999887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.94  E-value=0.018  Score=40.68  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 010717          384 AKNKGVDNQKAGQYADAIKWLSWAVILL  411 (503)
Q Consensus       384 lk~lGn~~fkqGDY~eAIk~YeKALeL~  411 (503)
                      +..+|.+|.+.|+|++|+++|+++|++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            5567777777777777777777766553

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.86  E-value=0.12  Score=56.82  Aligned_cols=89  Identities=17%  Similarity=0.117  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHHHHHHHhcCC-------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Q 010717          396 QYADAIKWLSWAVILLEKSGD-------------------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--N  454 (503)
Q Consensus       396 DY~eAIk~YeKALeL~pk~~d-------------------dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~  454 (503)
                      -..+|.++|++|++..+..-.                   ..-...+...+|.|..++|+.+||++.++..++..|.  +
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~  294 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN  294 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence            367888888888876553110                   0012344567899999999999999999999998775  5


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          455 VSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       455 ~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      ...++++-.+|..+++|.++...+.+.-++
T Consensus       295 l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  295 LNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            679999999999999999998888776443

The molecular function of this protein is uncertain.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.83  E-value=0.44  Score=45.51  Aligned_cols=115  Identities=14%  Similarity=-0.018  Sum_probs=89.2

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      .....+.....+..+.++.+++...+.....+      .|...++-..-+.+++..+++.+|+..++.+..-.|..+.+-
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k   81 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK   81 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence            35667888888999999999999999887777      566778888889999999999999999999988889998888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      -.++.||+.+++.+-= .+-++++... .++.+...++.+...
T Consensus        82 ALlA~CL~~~~D~~Wr-~~A~evle~~-~d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   82 ALLALCLYALGDPSWR-RYADEVLESG-ADPDARALVRALLAR  122 (160)
T ss_pred             HHHHHHHHHcCChHHH-HHHHHHHhcC-CChHHHHHHHHHHHh
Confidence            8889999999985432 2223344443 356666666665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.80  E-value=0.084  Score=58.12  Aligned_cols=108  Identities=14%  Similarity=0.088  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-DDTNVSVLVQ  460 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-dPd~~kAlyr  460 (503)
                      .+-..++.++.+.|+.+|||+.|.+.++..+    ..+...++.|+..|++.+++|.++...+.+-=++ -|+.+..+|.
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT  335 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT  335 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence            3445689999999999999999999987633    2245679999999999999999998888775433 2667778887


Q ss_pred             HHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 010717          461 RALLYES-MEK---------------YKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       461 lA~Ay~~-LGd---------------yeeAle~LqkALkLDPen~eAk~  493 (503)
                      .|....+ .++               -..|++.+++|++.+|--+....
T Consensus       336 aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  336 AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            7665433 122               23578999999999986654433

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.75  E-value=0.2  Score=50.73  Aligned_cols=110  Identities=5%  Similarity=-0.095  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Q 010717          380 TGAAAKNKGVDNQK-AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV---  455 (503)
Q Consensus       380 ~A~alk~lGn~~fk-qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~---  455 (503)
                      ....|...|..-++ .++.+.|.+.|+.+++..+      .+..+|......++++++.+.|...|++|+..-+...   
T Consensus        34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~------~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~  107 (280)
T PF05843_consen   34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP------SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSK  107 (280)
T ss_dssp             -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHH
Confidence            35677778877666 6777779999999999854      4567788888899999999999999999998766544   


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                      ..|-....--...|+++......+++.++.|++..+...+
T Consensus       108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~  147 (280)
T PF05843_consen  108 KIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS  147 (280)
T ss_dssp             HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            3555667777778999999999999999999876655543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.68  E-value=0.095  Score=60.74  Aligned_cols=103  Identities=18%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      +....|..+++.|++++|.++++..-.+      .+++-..+.-+-.||.+++++++|+..|++++..+|. -+.++.+=
T Consensus        45 a~vLkaLsl~r~gk~~ea~~~Le~~~~~------~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF  117 (932)
T KOG2053|consen   45 AKVLKALSLFRLGKGDEALKLLEALYGL------KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF  117 (932)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHhhhccC------CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence            3444566666777777777444333222      2224455555667777777777777777777777776 66666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      .+|.+-+.|.+--..-.+..+..|+++-..
T Consensus       118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyf  147 (932)
T KOG2053|consen  118 MAYVREKSYKKQQKAALQLYKNFPKRAYYF  147 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccchH
Confidence            666666666665555555555666665443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.68  E-value=0.046  Score=53.11  Aligned_cols=63  Identities=11%  Similarity=0.127  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          437 YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK----------YKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       437 yeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd----------yeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      |+.|.+.++.....+|.+++++++-|.+|..|-+          +++|+.-|+++|+|+|+.-++...+..+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~   79 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAY   79 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            7899999999999999999999999999888743          67899999999999999988877776554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=0.22  Score=51.24  Aligned_cols=91  Identities=16%  Similarity=0.164  Sum_probs=68.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010717          396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGA  475 (503)
Q Consensus       396 DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAl  475 (503)
                      ++.+|.-+|++.-+.      .+....++...+.|++.+++|++|...++.+|.-++.+++.+.++-.+-..+|+-.++.
T Consensus       188 k~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             hhhhHHHHHHHHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence            355555555544321      12234567778999999999999999999999999999999999988888888877766


Q ss_pred             HHH-HHHHHhCCCCHHHH
Q 010717          476 EDL-RTVLKIDPSNRIAR  492 (503)
Q Consensus       476 e~L-qkALkLDPen~eAk  492 (503)
                      +.+ ......+|+++-++
T Consensus       262 ~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  262 ERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             HHHHHHHHhcCCcchHHH
Confidence            554 45555688876553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.61  E-value=0.27  Score=49.32  Aligned_cols=120  Identities=17%  Similarity=0.104  Sum_probs=92.6

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C-C--
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ--D-D--  452 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL--d-P--  452 (503)
                      ...+..+...+..+.+.|.+..|...+.++..+....  ......+....+..+...|+..+|+..++..++.  . .  
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~--~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~  220 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS--ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID  220 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc--cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence            3467788999999999999999999999988762211  1124567788899999999999999999888871  1 0  


Q ss_pred             -----------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          453 -----------------------------TNVSVLVQRALLYESM------EKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       453 -----------------------------d~~kAlyrlA~Ay~~L------GdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                                                   ...++++.+|.-...+      .++++++..|+++++++|....+...+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                                         0134677777777777      88999999999999999988776666555


Q ss_pred             HH
Q 010717          498 LT  499 (503)
Q Consensus       498 Lq  499 (503)
                      ..
T Consensus       301 ~~  302 (352)
T PF02259_consen  301 FN  302 (352)
T ss_pred             HH
Confidence            43

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.60  E-value=0.11  Score=54.61  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       423 aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      +-.+.+.-..+.|+.++|...++.|++++|++++++...|.......++-+|-.+|.++|.++|.|.++.....+
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            334455556789999999999999999999999999999999999999999999999999999999887655443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.60  E-value=0.021  Score=40.34  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVL  482 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkAL  482 (503)
                      |.++|.+|..+|+|++|+++|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.59  E-value=0.012  Score=63.90  Aligned_cols=88  Identities=20%  Similarity=0.214  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      +..+-+++.++++.++|..|+.-+.+||++      +|....+|+.+|.+++.+++|.+|+.++++...+.|+.+++...
T Consensus        38 a~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~  111 (476)
T KOG0376|consen   38 AIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRK  111 (476)
T ss_pred             eeeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence            334556678889999999999999999999      67888999999999999999999999999999999999988777


Q ss_pred             HHHHHH--HcCCHHHH
Q 010717          461 RALLYE--SMEKYKLG  474 (503)
Q Consensus       461 lA~Ay~--~LGdyeeA  474 (503)
                      +..|-.  .+.++++|
T Consensus       112 ~~Ec~~~vs~~~fe~a  127 (476)
T KOG0376|consen  112 IDECNKIVSEEKFEKA  127 (476)
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            766543  33344444

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.54  E-value=0.15  Score=43.74  Aligned_cols=49  Identities=16%  Similarity=0.201  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717          400 AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN  454 (503)
Q Consensus       400 AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~  454 (503)
                      .++.++++++.      +|.+..+.+.++.+++..|++++|++.+-.+++.++++
T Consensus         7 ~~~al~~~~a~------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAA------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            35567777776      67788999999999999999999999999999999887

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.43  E-value=0.13  Score=56.14  Aligned_cols=88  Identities=13%  Similarity=0.031  Sum_probs=71.7

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHcC
Q 010717          394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS----VLVQRALLYESME  469 (503)
Q Consensus       394 qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k----AlyrlA~Ay~~LG  469 (503)
                      ..+.+.|.+.+.+.++.      -|..+-.+...|.++...|+.++|++.+++|+.....+.+    .+|.++.+|+.+.
T Consensus       246 ~~~~~~a~~lL~~~~~~------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~  319 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH  319 (468)
T ss_pred             CCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence            34566677777777765      4556677889999999999999999999999965555544    6778899999999


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 010717          470 KYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       470 dyeeAle~LqkALkLDPe  487 (503)
                      +|++|.++|.+.++...=
T Consensus       320 ~w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  320 DWEEAAEYFLRLLKESKW  337 (468)
T ss_pred             hHHHHHHHHHHHHhcccc
Confidence            999999999999987543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.27  E-value=0.26  Score=59.74  Aligned_cols=78  Identities=17%  Similarity=0.060  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS--NRIARSTIHRL  498 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe--n~eAk~~La~L  498 (503)
                      ..+|..|.-+|.+.+.+++|.+.+++.++...+..+.|...+..++...+-++|.+.+.+||+--|.  +.++....++|
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            3456667778888888888888888888877777888888899888888888888899999988887  55555554444

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.20  E-value=0.47  Score=47.14  Aligned_cols=108  Identities=17%  Similarity=0.053  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-------CHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQK----AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-------EYKKAVADCSKVL  448 (503)
Q Consensus       380 ~A~alk~lGn~~fk----qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-------dyeeALedaekAL  448 (503)
                      .+...+.+|..+..    ..|+.+|+++|++|.++-.    .+- ..+..+++.+|..-.       +..+|+..|.++.
T Consensus       108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~----~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa  182 (292)
T COG0790         108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN----VEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA  182 (292)
T ss_pred             cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC----hhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence            45567778888877    5599999999999997611    100 234677777776531       2347888888888


Q ss_pred             HcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          449 EQDDTNVSVLVQRALLYES----MEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       449 kLdPd~~kAlyrlA~Ay~~----LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      .+.  +..+++++|.+|..    ..++++|+.+|+++-+...  ......+.
T Consensus       183 ~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         183 ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            776  78899999988866    4589999999999998765  44444444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.17  E-value=0.16  Score=52.14  Aligned_cols=81  Identities=17%  Similarity=0.279  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ...+..++=..+.+.++.+.|+.+.++.+.++|+++.-+.-+|.+|..++.+.-|++++...++.-|+...+...-.++.
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            45566777788899999999999999999999999999999999999999999999999999999999877765555544


Q ss_pred             h
Q 010717          500 K  500 (503)
Q Consensus       500 k  500 (503)
                      +
T Consensus       260 ~  260 (269)
T COG2912         260 E  260 (269)
T ss_pred             H
Confidence            3

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.09  E-value=0.027  Score=61.88  Aligned_cols=86  Identities=17%  Similarity=0.071  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhc--C---------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVI-LLEKS--G---------DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALe-L~pk~--~---------ddpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      ..+.++|.++|+.+.|..++.+|.+|+. .+...  +         ......++++|.|..|+..|+.-.|.+.+.++..
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            3457899999999999999999999995 33321  1         0234678999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHH
Q 010717          450 QDDTNVSVLVQRALLYES  467 (503)
Q Consensus       450 LdPd~~kAlyrlA~Ay~~  467 (503)
                      ....++..|+|+|.|++.
T Consensus       364 vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHhcCcHHHHHHHHHHHH
Confidence            999999999999999865

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.09  E-value=0.29  Score=46.66  Aligned_cols=82  Identities=12%  Similarity=-0.035  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ...+..+..+-++.++.+++...+.....++|..+......|.+++..++|.+|+..|+++..-.|..+.++..+..|..
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            45667777788889999999999999999999999999999999999999999999999999999999999888888876


Q ss_pred             hh
Q 010717          501 MV  502 (503)
Q Consensus       501 lL  502 (503)
                      .+
T Consensus        90 ~~   91 (160)
T PF09613_consen   90 AL   91 (160)
T ss_pred             Hc
Confidence            54

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.08  E-value=0.21  Score=58.03  Aligned_cols=91  Identities=13%  Similarity=0.048  Sum_probs=77.4

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 010717          391 NQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK  470 (503)
Q Consensus       391 ~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd  470 (503)
                      ....++|..|++...+.++.      .|....+...-|..++++|++++|+..++..-.+.+++...+--+-.||..+++
T Consensus        19 ~ld~~qfkkal~~~~kllkk------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~   92 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK   92 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence            46788999999999999876      334445566668999999999999977777666777788888889999999999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 010717          471 YKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       471 yeeAle~LqkALkLDPe  487 (503)
                      +++|...|+++++.+|.
T Consensus        93 ~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   93 LDEAVHLYERANQKYPS  109 (932)
T ss_pred             hhHHHHHHHHHHhhCCc
Confidence            99999999999999998

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.06  E-value=0.19  Score=49.76  Aligned_cols=99  Identities=10%  Similarity=-0.028  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      +...+..+++..|..+++.+|...+++..+.-+. ...   ......++..|..+|++++|...++.++...| .+++..
T Consensus       123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~r~---pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~  197 (251)
T COG4700         123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-FRS---PDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARI  197 (251)
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-cCC---CCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHH
Confidence            5677888999999999999999999999877321 112   23445568888999999999999999999987 466788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALk  483 (503)
                      +.+..+..+|+.++|.+.+..+.+
T Consensus       198 ~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         198 YYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHH
Confidence            889999999998888777665544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.04  E-value=0.26  Score=54.71  Aligned_cols=103  Identities=17%  Similarity=0.128  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHh----C-CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCH
Q 010717          384 AKNKGVDNQKA----G-QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG---EYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       384 lk~lGn~~fkq----G-DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG---dyeeALedaekALkLdPd~~  455 (503)
                      ...+|.+|++.    . |++.|+++|.+|.++        ....+.+.++.|+..-.   ++.+|.++|..|.+.  .++
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~  360 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHI  360 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CCh
Confidence            45677777774    3 789999999999977        23467788899997765   578999999999876  479


Q ss_pred             HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          456 SVLVQRALLYESM----EKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       456 kAlyrlA~Ay~~L----GdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      .++|+++.||..-    .+.++|+.++.++-++.  +..+...+..+
T Consensus       361 ~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~  405 (552)
T KOG1550|consen  361 LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF  405 (552)
T ss_pred             HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence            9999999999763    57899999999999887  44444444443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.80  E-value=0.33  Score=58.81  Aligned_cols=108  Identities=14%  Similarity=-0.006  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--NVSVLVQRA  462 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~~kAlyrlA  462 (503)
                      ..+..+|.+..++++|.++|++-++-..      ....+|..++..+++..+-++|...+++||+.-|.  +.+..-..|
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            3445566666777778777777776532      23578999999999999999999999999999887  778888889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +.-+..|+.+.+...|+..|.-+|........+.+.
T Consensus      1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred             HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence            999999999999999999999999876665554443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.78  E-value=0.53  Score=52.73  Aligned_cols=121  Identities=12%  Similarity=0.059  Sum_probs=87.0

Q ss_pred             CCcchHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Q 010717          376 PAGVTGAAAKNKGVDNQ-KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-  453 (503)
Q Consensus       376 ~~~~~A~alk~lGn~~f-kqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd-  453 (503)
                      .+..++...+.+|.+++ ...++++|..++++++.+..+..-......+.+.++.++.+.+... |+..++++|+.... 
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~  132 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY  132 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence            34457888999999987 6789999999999999997663323334555666788888887777 99999999987644 


Q ss_pred             ---CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 010717          454 ---NVSVLVQRA--LLYESMEKYKLGAEDLRTVLKID--PSNRIARSTIHR  497 (503)
Q Consensus       454 ---~~kAlyrlA--~Ay~~LGdyeeAle~LqkALkLD--Pen~eAk~~La~  497 (503)
                         ....++++-  ..+...+++..|++.++++..+.  ..+..+...+.-
T Consensus       133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l  183 (608)
T PF10345_consen  133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL  183 (608)
T ss_pred             CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence               233344443  23333479999999999999887  455555444433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.77  E-value=0.32  Score=48.40  Aligned_cols=87  Identities=16%  Similarity=0.032  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC----HHHHHHHHHHHHHcC
Q 010717          396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD--DTN----VSVLVQRALLYESME  469 (503)
Q Consensus       396 DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd--Pd~----~kAlyrlA~Ay~~LG  469 (503)
                      .-...|+++++|++...+.........+...+|.-|++.|+|++|++.++.+....  ..|    ...+..+..|+..++
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            34456777888887776655444556677789999999999999999999997653  344    346777899999999


Q ss_pred             CHHHHHHHHHHHH
Q 010717          470 KYKLGAEDLRTVL  482 (503)
Q Consensus       470 dyeeAle~LqkAL  482 (503)
                      +.++.+...-+++
T Consensus       233 ~~~~~l~~~leLl  245 (247)
T PF11817_consen  233 DVEDYLTTSLELL  245 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999988877665

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.75  E-value=0.28  Score=46.06  Aligned_cols=85  Identities=15%  Similarity=0.084  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAGQ---YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGD---Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k  456 (503)
                      ..+..++++..+.+..+   ..+-|.+++..++-  ..  ....-++++-++..++++++|++++.+++.+|+.+|+|.+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~--~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AH--PERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ  106 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cC--cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence            46677888888877654   56678888887751  11  2234456666999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHc
Q 010717          457 VLVQRALLYESM  468 (503)
Q Consensus       457 AlyrlA~Ay~~L  468 (503)
                      +.-.+-.+.-.+
T Consensus       107 a~~Lk~~ied~i  118 (149)
T KOG3364|consen  107 ALELKETIEDKI  118 (149)
T ss_pred             HHHHHHHHHHHH
Confidence            876665554433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.61  E-value=0.072  Score=37.14  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQ  450 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkL  450 (503)
                      .++.++|.+|..+|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45666777777777777777777777655

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.56  E-value=0.58  Score=49.58  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-----c---------C---------CChhhHHHHHHHHHHHHHcCC
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK-----S---------G---------DMATMMEVLSTRASCYKEVGE  436 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk-----~---------~---------ddpd~A~aysNrAlcylrLGd  436 (503)
                      +++.+..++.++..+||+..|.++.++||-..++     .         +         .......++......+.+.|-
T Consensus        39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~  118 (360)
T PF04910_consen   39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC  118 (360)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence            5889999999999999999999999999855541     1         0         012233455566788889999


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 010717          437 YKKAVADCSKVLEQDDT  453 (503)
Q Consensus       437 yeeALedaekALkLdPd  453 (503)
                      +.-|+++|+-.+.+||.
T Consensus       119 ~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999987

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.56  E-value=0.35  Score=53.42  Aligned_cols=93  Identities=10%  Similarity=0.047  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 010717          401 IKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK-YKLGAEDLR  479 (503)
Q Consensus       401 Ik~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd-yeeAle~Lq  479 (503)
                      +.+|+.|+..      -+.+..+|.+......+.+.+.+--..|.++|.++|+++..|..-|.=.+..+. ++.|...|.
T Consensus        91 v~lyr~at~r------f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   91 VFLYRRATNR------FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHh------cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence            3567777654      234678999887777777779999999999999999999999999988888776 999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHH
Q 010717          480 TVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       480 kALkLDPen~eAk~~La~Lq  499 (503)
                      ++|+.+|+++.+....-+++
T Consensus       165 rgLR~npdsp~Lw~eyfrmE  184 (568)
T KOG2396|consen  165 RGLRFNPDSPKLWKEYFRME  184 (568)
T ss_pred             HHhhcCCCChHHHHHHHHHH
Confidence            99999999988766655543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.51  E-value=0.19  Score=58.34  Aligned_cols=104  Identities=13%  Similarity=0.044  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHH----H---HHHhcCC-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAV----I---LLEKSGD-------MATMMEVLSTRASCYKEVGEYKKAVADCSK  446 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKAL----e---L~pk~~d-------dpd~A~aysNrAlcylrLGdyeeALedaek  446 (503)
                      -..|++.+..+..++|.+.|+++|+|+-    +   ++.+++.       ...+..+|.=.|..+-..|+.+.||.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            3467888888899999999999998853    1   1111111       123346677778888899999999999987


Q ss_pred             HHHc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          447 VLEQ---------------------DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       447 ALkL---------------------dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      |...                     ...+.-|+|.+|..|...|++.+|+..|.++..+
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            6532                     2345669999999999999999999999886543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.50  E-value=0.24  Score=50.77  Aligned_cols=79  Identities=23%  Similarity=0.098  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+.+...+++..++|-++++.....|..      .+.+..+|+.||.++...=+.++|.+|+.++|+++|.-..+.-
T Consensus       229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            3446778899999999999999999999987      6778999999999999999999999999999999997766655


Q ss_pred             HHHHH
Q 010717          460 QRALL  464 (503)
Q Consensus       460 rlA~A  464 (503)
                      +.-.+
T Consensus       303 rElr~  307 (329)
T KOG0545|consen  303 RELRL  307 (329)
T ss_pred             HHHHH
Confidence            54333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.44  E-value=0.3  Score=50.55  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCC--CCHHH
Q 010717          384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL----EQDD--TNVSV  457 (503)
Q Consensus       384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL----kLdP--d~~kA  457 (503)
                      .+.+..++.-.++|.-.+..|.+.++..     .+.+..+...++.+.++.|+.+.|..+++.+-    +++.  ....+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~-----~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V  254 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYY-----PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV  254 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhC-----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence            4445666677889999999999999852     24556788999999999999999999999544    4443  23446


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +.+.+.+|...++|.+|...|.+.+..||.+..+....+-|
T Consensus       255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            67778888888999999999999999999887665544433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.36  E-value=0.36  Score=47.59  Aligned_cols=87  Identities=14%  Similarity=0.108  Sum_probs=58.9

Q ss_pred             CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-------cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK-------SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL  448 (503)
Q Consensus       376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk-------~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL  448 (503)
                      .....+..+..++-.|...++.++...++++|++...+       .....+...+++.+|.++.++|++++|++++.+++
T Consensus       113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi  192 (214)
T PF09986_consen  113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI  192 (214)
T ss_pred             CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            33356777788888888888855555555555544332       11133567888899999999999999999999999


Q ss_pred             HcCCCCH-HHHHHHH
Q 010717          449 EQDDTNV-SVLVQRA  462 (503)
Q Consensus       449 kLdPd~~-kAlyrlA  462 (503)
                      ...-... ..+..+|
T Consensus       193 ~~~~~s~~~~l~~~A  207 (214)
T PF09986_consen  193 GSKKASKEPKLKDMA  207 (214)
T ss_pred             cCCCCCCcHHHHHHH
Confidence            7653332 2444444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.28  E-value=0.23  Score=52.77  Aligned_cols=90  Identities=17%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717          387 KGVDNQKAGQYADAIKWLSWAVILLEK-SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY  465 (503)
Q Consensus       387 lGn~~fkqGDY~eAIk~YeKALeL~pk-~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay  465 (503)
                      -=..+|-.|+...-...+++.|   ++ +.+.|-...+.--++.|+.+.|.|++|.+.+++++++++.+.=+...++.++
T Consensus       143 sh~a~fy~G~~~~~k~ai~kIi---p~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  143 SHDAHFYNGNQIGKKNAIEKII---PKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             hhhHHHhccchhhhhhHHHHhc---cccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence            3344555555555444444443   44 4455666677777889999999999999999999999887766666666666


Q ss_pred             HHcCCHHHHHHHHH
Q 010717          466 ESMEKYKLGAEDLR  479 (503)
Q Consensus       466 ~~LGdyeeAle~Lq  479 (503)
                      .-.++++++++..+
T Consensus       220 em~~r~Keg~eFM~  233 (491)
T KOG2610|consen  220 EMNGRHKEGKEFMY  233 (491)
T ss_pred             HhcchhhhHHHHHH
Confidence            66666666655544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.15  E-value=0.82  Score=46.16  Aligned_cols=102  Identities=19%  Similarity=0.101  Sum_probs=73.6

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHH-hcCC-ChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc----CC---CC------
Q 010717          391 NQKAGQYADAIKWLSWAVILLE-KSGD-MATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQ----DD---TN------  454 (503)
Q Consensus       391 ~fkqGDY~eAIk~YeKALeL~p-k~~d-dpd~A~aysNrAlcylrLG-dyeeALedaekALkL----dP---d~------  454 (503)
                      +.+++|++.|..+|.|+-.+.. ..++ ....+.++++.|...+..+ ++++|+.++++++++    ..   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            4688999999999999987752 1111 2346778999999999999 999999999999887    21   11      


Q ss_pred             -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHH
Q 010717          455 -VSVLVQRALLYESMEKYK---LGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       455 -~kAlyrlA~Ay~~LGdye---eAle~LqkALkLDPen~eAk  492 (503)
                       ...+..++.+|...+.++   +|...++.+....|+.++..
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence             235666788998887754   45555555555567665554

It is also involved in sporulation [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.95  E-value=0.59  Score=51.96  Aligned_cols=116  Identities=18%  Similarity=0.143  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKA-----GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-----EYKKAVADCSKVLE  449 (503)
Q Consensus       380 ~A~alk~lGn~~fkq-----GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-----dyeeALedaekALk  449 (503)
                      ...+...+|.+++.-     +|.+.|+.+|+.|.+-..+.. ......+.+.+|.||++..     +++.|+.++.++-+
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            355566677776654     689999999999987211100 0113446788999998843     78999999999998


Q ss_pred             cCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          450 QDDTNVSVLVQRALLYESME---KYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       450 LdPd~~kAlyrlA~Ay~~LG---dyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +.  ++.++|++|.+|..--   ++.+|.++|..|.+.  .+.++...+..|..
T Consensus       322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~  371 (552)
T KOG1550|consen  322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE  371 (552)
T ss_pred             cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence            85  7889999999998865   678999999998764  45666666666654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.91  E-value=0.25  Score=42.03  Aligned_cols=59  Identities=15%  Similarity=0.247  Sum_probs=48.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          430 CYKEVGEYKKAVADCSKVLEQDDT---------NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       430 cylrLGdyeeALedaekALkLdPd---------~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      -.++.++|.+|++.+.+.+.....         ...+++++|.++...|++++|++.+++++++..+.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            346899999999999988866421         24578889999999999999999999999987543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.82  E-value=0.15  Score=35.43  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK  413 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk  413 (503)
                      +.++.++|..|...|+|++|++++++++++..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            567889999999999999999999999988543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.78  E-value=1.6  Score=48.05  Aligned_cols=72  Identities=17%  Similarity=0.161  Sum_probs=59.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHhhh
Q 010717          427 RASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS----NRIARSTIHRLTKMV  502 (503)
Q Consensus       427 rAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe----n~eAk~~La~LqklL  502 (503)
                      =|..++..|+|.++.-++.-..+++| .+.++..+|.|++..++|++|.++|.+   +-|+    +..+++++.-|++.+
T Consensus       468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~  543 (549)
T PF07079_consen  468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHL  543 (549)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhh
Confidence            35667889999999999999999999 999999999999999999999999874   3342    245567777776643

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.71  E-value=1.9  Score=41.10  Aligned_cols=70  Identities=9%  Similarity=0.102  Sum_probs=59.4

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      +.....++..+|..|++.|++++|++.|.+++...-..   ...++++-.+.+..+++......+.++-.+-.
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            45567889999999999999999999999988765322   56788889999999999999999999887643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.43  E-value=1.1  Score=48.53  Aligned_cols=98  Identities=18%  Similarity=0.126  Sum_probs=74.5

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717          389 VDNQKAGQYADAIKWLSWAVIL--LEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE  466 (503)
Q Consensus       389 n~~fkqGDY~eAIk~YeKALeL--~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~  466 (503)
                      ...+..|||+.|+++.....+.  +++..-+...+.++.-.+...+ .-+...|..+..++++|.|+...+-+.-+.+|+
T Consensus       196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf  274 (531)
T COG3898         196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALF  274 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence            3456778999999888766543  2222223344555555554444 345889999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC
Q 010717          467 SMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       467 ~LGdyeeAle~LqkALkLDPe  487 (503)
                      ..++..++-..++.+-+.+|.
T Consensus       275 ~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         275 RDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             hccchhhhhhHHHHHHhcCCC
Confidence            999999999999999999883

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.21  E-value=0.6  Score=39.90  Aligned_cols=67  Identities=19%  Similarity=0.176  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ  450 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL  450 (503)
                      +......|..+|.+.+..+|+..++++++...   +.++...++-.+..+|...|+|+++++++-+-+.+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566788899999999999999999997633   35567788888899999999999999998776655

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.20  E-value=0.7  Score=52.51  Aligned_cols=75  Identities=11%  Similarity=0.080  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDT------NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd------~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                      .++-|-|.-+++..+|..+++.|+..++.-+.      .++....++.||..+.+.++|++++++|-+.||.++-.+..+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            45667788889999999999999999976543      367888899999999999999999999999999987665554


Q ss_pred             H
Q 010717          496 H  496 (503)
Q Consensus       496 a  496 (503)
                      -
T Consensus       435 ~  435 (872)
T KOG4814|consen  435 L  435 (872)
T ss_pred             H
Confidence            4

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.20  E-value=0.12  Score=52.27  Aligned_cols=60  Identities=20%  Similarity=0.173  Sum_probs=54.0

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~  455 (503)
                      ...+.+|++.|.+.|.+|+++      .|....-|+.++....+.|+++.|.+.|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~l------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALEL------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhc------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            456789999999999999999      456678999999999999999999999999999998763

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.99  E-value=0.42  Score=56.54  Aligned_cols=108  Identities=13%  Similarity=0.059  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHcCCCCHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV----G---EYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL----G---dyeeALedaekALkLdPd~~kA  457 (503)
                      ....+++...+.|++|+..|++..+-.|   ....-.++.+..|...+++    +   .+++|+..+++... -|.-+--
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  554 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFP---GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLE  554 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCC---CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchH
Confidence            3456778888999999999998876543   2223345666666666553    2   35566666654332 2445666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      |+-+|.+|..+++|+|-+++|.-|++..|.++++-....
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (932)
T PRK13184        555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD  593 (932)
T ss_pred             HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence            888899999999999999999999999999987754443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.99  E-value=1.1  Score=49.59  Aligned_cols=103  Identities=6%  Similarity=-0.075  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ...+...|.--..++++..|...|++||+.      +.....+|...+.|-++.+....|.-.+++|+.+-|.--+.||.
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdv------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK  146 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDV------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK  146 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhc------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence            445666777777889999999999999987      45678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      .-.+-..+|+..-|...|++-+...|+..
T Consensus       147 Y~ymEE~LgNi~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  147 YIYMEEMLGNIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence            99999999999999999999999999753

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.90  E-value=2  Score=44.37  Aligned_cols=66  Identities=12%  Similarity=0.164  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          419 TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       419 d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      ....++..++..+...++++.+++.+++.+.++|.+-++|+++=.+|+..|+...|+..|+++-++
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            457788899999999999999999999999999999999999999999999999999999988774

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.90  E-value=0.084  Score=55.82  Aligned_cols=68  Identities=13%  Similarity=0.068  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT  453 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd  453 (503)
                      .+..+..++.++++.++...||.-|..|+++      +++.+.-|-.|+.++..+|+.++|..+++.+++++-+
T Consensus       147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  147 LAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhhhcccccceeeeccCCchhhhhhhhhhcc------CcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            5777888999999999999999999999999      5677778888999999999999999999999999743

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.81  E-value=1.9  Score=46.34  Aligned_cols=113  Identities=12%  Similarity=0.058  Sum_probs=83.8

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHH
Q 010717          389 VDNQKAGQYADAIKWLSWAVILLEKSGDMA--TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ----DDTNVSVLVQRA  462 (503)
Q Consensus       389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddp--d~A~aysNrAlcylrLGdyeeALedaekALkL----dPd~~kAlyrlA  462 (503)
                      ++...+..|..|.+.+.+++..+.+.-+++  ....+..++=++|....+|+.-++..+..-.+    -++.....+.+|
T Consensus       107 dirkare~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~ya  186 (374)
T PF13281_consen  107 DIRKARERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYA  186 (374)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHH
Confidence            344445566666666666666555433332  24556778888999999999999999988777    456677888899


Q ss_pred             HHHHH---cCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHhh
Q 010717          463 LLYES---MEKYKLGAEDLRTV-LKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       463 ~Ay~~---LGdyeeAle~LqkA-LkLDPen~eAk~~La~Lqkl  501 (503)
                      .++..   .|+.++|++.+..+ ......+.++.-.+.++.+-
T Consensus       187 fALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  187 FALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD  229 (374)
T ss_pred             HHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            99999   99999999999994 44556678888888877653

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.74  E-value=3.6  Score=40.86  Aligned_cols=94  Identities=18%  Similarity=0.040  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHh-----C--CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 010717          384 AKNKGVDNQKA-----G--QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQDD  452 (503)
Q Consensus       384 lk~lGn~~fkq-----G--DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLdP  452 (503)
                      .+.++..+..-     -  +...|+.+|.+|.++        ....+..+++.||..    ..++++|+.+|+++.+...
T Consensus       151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            55666665553     1  344789999998876        246788889988866    4579999999999999876


Q ss_pred             CCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCC
Q 010717          453 TNVSVLVQRALLYESME---------------KYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       453 d~~kAlyrlA~Ay~~LG---------------dyeeAle~LqkALkLDPen  488 (503)
                        ..++++++ +++..+               +...|+..++++..+.+..
T Consensus       223 --~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  270 (292)
T COG0790         223 --GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN  270 (292)
T ss_pred             --HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence              88999999 666555               8888999999988876654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.73  E-value=1.1  Score=42.68  Aligned_cols=87  Identities=13%  Similarity=-0.022  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+.....+.....+..++...+.....+      .|...++-..-+.+++..|++.+|+..++....-.+..+.+.-
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA   82 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKA   82 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence            4667778888888889999998888877777      4556677777888999999999999999998888888888888


Q ss_pred             HHHHHHHHcCCHH
Q 010717          460 QRALLYESMEKYK  472 (503)
Q Consensus       460 rlA~Ay~~LGdye  472 (503)
                      .++.|++.++|.+
T Consensus        83 L~A~CL~al~Dp~   95 (153)
T TIGR02561        83 LLALCLNAKGDAE   95 (153)
T ss_pred             HHHHHHHhcCChH
Confidence            8899999998854

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.58  E-value=0.74  Score=50.91  Aligned_cols=97  Identities=13%  Similarity=-0.008  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      +..+...+....++.+...|.+.+-.||-.+|+.       .++-..-.+-+++++++.+...|++-|+..|.+-.+|..
T Consensus       404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-------KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k  476 (677)
T KOG1915|consen  404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-------KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK  476 (677)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-------hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence            3344444555555555555666665555544431       233333444566777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      .|..-..||+.+.|...|+-|+..
T Consensus       477 yaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  477 YAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhcC
Confidence            777777777777777777666543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.46  E-value=2.3  Score=47.24  Aligned_cols=99  Identities=19%  Similarity=0.130  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE-QDDTN----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk-LdPd~----  454 (503)
                      .+..+..+|.....-+.|++|...|..|+++..+   ....+-+-.|+|..|++.++-+.    +.++++ +.|.+    
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~---~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~  438 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES---IDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSL  438 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcc
Confidence            4556677888888889999999999999988543   22345566789999999877544    334443 34442    


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          455 ------VSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       455 ------~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                            ..++|..|.-.+..+++.||...+++.|++.
T Consensus       439 ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  439 SSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                  3478888999999999999999999999987

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.30  E-value=1.3  Score=47.34  Aligned_cols=108  Identities=12%  Similarity=-0.028  Sum_probs=77.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHH---HHHHHHH
Q 010717          388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-DDTNVS---VLVQRAL  463 (503)
Q Consensus       388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-dPd~~k---AlyrlA~  463 (503)
                      +.+.+.+|++.+|...+++.|+-      -|.+..++..-=.+++.+|+.+.-+..+++++-. +++-+-   ++=.++.
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDD------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHh------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            44455667777777777776654      3444445544556677788888888888888866 555533   3334688


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          464 LYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       464 Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++.+|-|++|.+.-+++++|++.+--+...+..+.++
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem  221 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM  221 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh
Confidence            89999999999999999999999987776666555443

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.12  E-value=0.83  Score=49.52  Aligned_cols=99  Identities=15%  Similarity=0.111  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD--------D  452 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd--------P  452 (503)
                      -.++..+|.-|+..|+++.|++.|.++.+.+..   .......|.|+-.+-+.++++-.-+.+..+|...-        .
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~  226 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE  226 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh
Confidence            456778999999999999999999998887654   34567788888899999999999999888887651        1


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          453 TNVSVLVQRALLYESMEKYKLGAEDLRTVL  482 (503)
Q Consensus       453 d~~kAlyrlA~Ay~~LGdyeeAle~LqkAL  482 (503)
                      -.++.....|.++..+++|+.|..+|..+.
T Consensus       227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  227 VPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            134566777999999999999999987653

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.91  E-value=1.5  Score=46.96  Aligned_cols=107  Identities=19%  Similarity=0.195  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HcCCCCH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE---VGEYKKAVADCSKVL-EQDDTNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr---LGdyeeALedaekAL-kLdPd~~  455 (503)
                      ..+...++=..|...++|+.=|++.+..-.+ +.. +-.....+...+|.++-+   .|+.++|+..+..++ ......+
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTC-DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Ccc-chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence            3445555555677777777777666554433 111 123345566778888888   999999999999955 4556788


Q ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 010717          456 SVLVQRALLYESM---------EKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       456 kAlyrlA~Ay~~L---------GdyeeAle~LqkALkLDPen  488 (503)
                      +.+..+|.+|..+         ...++|+++|+++.+++|+.
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            9999999998653         24789999999999999743

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.90  E-value=2.2  Score=48.83  Aligned_cols=112  Identities=12%  Similarity=0.056  Sum_probs=82.4

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-----  453 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd-----  453 (503)
                      .-...+...|..|...++.++|...|++|++.  ..+.-.+.+.+|++.|..-++..+++.|++..+.|...-..     
T Consensus       385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V--~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~  462 (835)
T KOG2047|consen  385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKV--PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEY  462 (835)
T ss_pred             ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC--CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhh
Confidence            34567888999999999999999999999876  33334567889999999999999999999998888754211     


Q ss_pred             -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          454 -------------NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       454 -------------~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                                   ..+.|-..+.....+|=++.....|.+++.|-=-.+++.
T Consensus       463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii  514 (835)
T KOG2047|consen  463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII  514 (835)
T ss_pred             hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence                         123444456666667777777777888877755444443

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=91.40  E-value=1.5  Score=44.11  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc----C-CCCHHHH
Q 010717          391 NQKAGQYADAIKWLSWAVILLEKSGDM------ATMMEVLSTRASCYKEVGEY-KKAVADCSKVLEQ----D-DTNVSVL  458 (503)
Q Consensus       391 ~fkqGDY~eAIk~YeKALeL~pk~~dd------pd~A~aysNrAlcylrLGdy-eeALedaekALkL----d-Pd~~kAl  458 (503)
                      ++..|+|+.|+++...||+.....++.      ...++-..+.+...+..|+- +-.+  .+....+    + |+.+.+.
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~--~~~~~~l~~~~dmpd~vrAK  170 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYF--LRVFLDLTTEWDMPDEVRAK  170 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhcCCCChHHHHH
Confidence            356789999999999999874444331      12233344455555666652 2221  2222222    1 5556666


Q ss_pred             HHHHHHHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          459 VQRALLYES-----------MEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       459 yrlA~Ay~~-----------LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +.+...+..           .++.++|+.+|+++++++|.- -++..+.+|++++
T Consensus       171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~l  224 (230)
T PHA02537        171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRL  224 (230)
T ss_pred             HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHH
Confidence            655444433           357789999999999999864 3455555555543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.39  E-value=2.7  Score=47.49  Aligned_cols=106  Identities=10%  Similarity=-0.042  Sum_probs=83.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCHHHHHHH----
Q 010717          387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSK-VLEQDDTNVSVLVQR----  461 (503)
Q Consensus       387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaek-ALkLdPd~~kAlyrl----  461 (503)
                      +...+...++...|+-....++..      ++..+.++.+++......+....++..+.+ |..+.|++.+....+    
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  146 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSV------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFY  146 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhc------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHH
Confidence            455556667777777777777766      667788999999988888877666655555 999999988766655    


Q ss_pred             --HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          462 --ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       462 --A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                        +..+..+++-+++...+++++++.|++..+...+...
T Consensus       147 ~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         147 QLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence              8899999999999999999999999997776665544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.24  E-value=0.47  Score=53.50  Aligned_cols=103  Identities=15%  Similarity=0.077  Sum_probs=85.7

Q ss_pred             HHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          384 AKNKGVDN-QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       384 lk~lGn~~-fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      +..++..| ..+|+..+|+.+|..|+.+.+.    ...-.++..+|.++.+.|...+|--.+..|+.-.+....-+|.++
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~----h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~  290 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHFSSR----HNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLG  290 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhhCCc----ccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHH
Confidence            33444444 5689999999999999988543    223456777999999999999999889999988888888899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      .+|..+++|...+.+|..+++.+|....
T Consensus       291 ~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  291 NIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             HHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            9999999999999999999999996543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.16  E-value=0.29  Score=36.00  Aligned_cols=30  Identities=23%  Similarity=0.310  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLd  451 (503)
                      .+|..+|.+-+..++|++|+++|++||++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            356667777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.02  E-value=2.8  Score=45.63  Aligned_cols=106  Identities=14%  Similarity=0.036  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ----DDTNVSVL  458 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL----dPd~~kAl  458 (503)
                      .|+-+...+...++...-...+...+....--.+....+.+.+.+=.+|+.-+.|+.|-....+..--    +-+|+..+
T Consensus       171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~  250 (493)
T KOG2581|consen  171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL  250 (493)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence            34445555555666555444444444331111234456777777888999999999988887766511    12567788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      |.+|.+..-..+|..|.++|..+++..|.+
T Consensus       251 yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  251 YYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            899999999999999999999999999985

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.01  E-value=7.8  Score=36.93  Aligned_cols=79  Identities=11%  Similarity=-0.045  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       423 aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+..+..+.+...+.+++...++...-+.|+........+.+++..++|.+|+..|+++..-.+..+..+..+..|...
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            3444455555677777777777777777777777777777777777777777777777776666666666666666544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=90.24  E-value=0.82  Score=55.15  Aligned_cols=107  Identities=15%  Similarity=0.112  Sum_probs=90.8

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----  451 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----  451 (503)
                      +.+.+|..++..+.+.+++++|+.+-.+|.-+.++.  .+.+.....|.+++...+..++...|+..+.+++++.     
T Consensus       971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen  971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence            368899999999999999999999999988665542  2356778889999999999999999999999998763     


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          452 ---DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       452 ---Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                         |.-+....++..++..+++++.|+++++.|+++.
T Consensus      1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence               4445566778889999999999999999999865

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.23  E-value=2.1  Score=42.72  Aligned_cols=68  Identities=21%  Similarity=0.272  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL  448 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL  448 (503)
                      ......+|.+|++.|+|++|+++|+.+.....+.+=......++..+..|+.++++.++.+..+=+.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            34456889999999999999999999976655433334566778889999999999999888775543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.17  E-value=4.1  Score=43.24  Aligned_cols=77  Identities=14%  Similarity=0.159  Sum_probs=63.0

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-----C------------CCC---HHHHHHHHHHHHH
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLE---------Q-----D------------DTN---VSVLVQRALLYES  467 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALk---------L-----d------------Pd~---~kAlyrlA~Ay~~  467 (503)
                      .|.....+..++.++.++|+++.|.+.+++||=         .     +            +++   -.++++....+..
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            567788899999999999999999999999872         1     1            112   2377888999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHH
Q 010717          468 MEKYKLGAEDLRTVLKIDPS-NRIARS  493 (503)
Q Consensus       468 LGdyeeAle~LqkALkLDPe-n~eAk~  493 (503)
                      .|-+.-|++.++-.+.+||. |+-...
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~g~l  142 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPLGVL  142 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcchhH
Confidence            99999999999999999998 654433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.91  E-value=1.8  Score=47.55  Aligned_cols=105  Identities=11%  Similarity=0.072  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----ChhhHHHHHHHHHHHHHcCCH------HHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-----MATMMEVLSTRASCYKEVGEY------KKAVADCSKVL  448 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-----dpd~A~aysNrAlcylrLGdy------eeALedaekAL  448 (503)
                      .+..++.+|..+++++.|.+|+.++-.|-+.+-....     -..++.+-..+..||+++++.      +.-+..|++++
T Consensus       162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence            3445788899999999999999998888766443211     112344455678899988763      23344445554


Q ss_pred             HcC-------------CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          449 EQD-------------DTNV------SVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       449 kLd-------------Pd~~------kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      ...             +..+      ..++..|.+.++.++-++|.++|+.+...
T Consensus       242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~  296 (568)
T KOG2561|consen  242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK  296 (568)
T ss_pred             hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            431             2222      23344599999999999999999987654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=89.91  E-value=4.2  Score=44.35  Aligned_cols=96  Identities=10%  Similarity=-0.036  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASC--YKEVGEYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlc--ylrLGdyeeALedaekALkLdPd~~kA  457 (503)
                      .+-.+...+...+-.|+|++|.+.|+..++-       |. -..+-.||++  ..++|+++.|++|.+.+-.+.|.-.=+
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-------PE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA  190 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLDD-------PE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA  190 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-------hH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH
Confidence            4556677889999999999999999887742       22 2233334433  357999999999999999999988777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALk  483 (503)
                      ....=...+..|+++.|++.++....
T Consensus       191 ~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         191 ARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            77777778889999999998875443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.85  E-value=5.6  Score=39.52  Aligned_cols=98  Identities=16%  Similarity=0.045  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhCCHH---HHHHHHHHHHHHHHhcCC---------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717          385 KNKGVDNQKAGQYA---DAIKWLSWAVILLEKSGD---------------MATMMEVLSTRASCYKEVGEYKKAVADCSK  446 (503)
Q Consensus       385 k~lGn~~fkqGDY~---eAIk~YeKALeL~pk~~d---------------dpd~A~aysNrAlcylrLGdyeeALedaek  446 (503)
                      ...|-.|+...+-+   +|...|+++++.......               ...-.-....++..+.+.+++++|+..++.
T Consensus        35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~  114 (207)
T COG2976          35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ  114 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            34556666665544   778888888876542111               111112234567788999999999999999


Q ss_pred             HHHcCCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          447 VLEQDDT-NV--SVLVQRALLYESMEKYKLGAEDLRTVL  482 (503)
Q Consensus       447 ALkLdPd-~~--kAlyrlA~Ay~~LGdyeeAle~LqkAL  482 (503)
                      ++..-.+ +.  -+-.|++.++..++++++|+..+....
T Consensus       115 ~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~  153 (207)
T COG2976         115 ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK  153 (207)
T ss_pred             HHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence            9966433 33  366788999999999999999887543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=89.84  E-value=5.2  Score=41.47  Aligned_cols=78  Identities=10%  Similarity=-0.000  Sum_probs=53.8

Q ss_pred             ChhhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          417 MATMMEVLSTRASCYKEVGE------------YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGd------------yeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      .|.+..+|..+....-.+-.            .+..+..|++||+.+|++.+.++.+=.+...+-+-++..+.+++++..
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~   94 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK   94 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            55666666665544433322            456677788888888888877777777777777778888888888888


Q ss_pred             CCCCHHHHHH
Q 010717          485 DPSNRIARST  494 (503)
Q Consensus       485 DPen~eAk~~  494 (503)
                      +|.+..+-..
T Consensus        95 ~~~~~~LW~~  104 (321)
T PF08424_consen   95 NPGSPELWRE  104 (321)
T ss_pred             CCCChHHHHH
Confidence            8877655443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.55  E-value=1.9  Score=44.42  Aligned_cols=78  Identities=21%  Similarity=0.145  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      .+.++=..+...++++.|+..-++.+.+      .|.+..-+..+|.+|.+++.+.-|+++++..+++.|+.+.+-..+.
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDL------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhh------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            3445556788899999999999999998      4555667788999999999999999999999999999988776665


Q ss_pred             HHHH
Q 010717          463 LLYE  466 (503)
Q Consensus       463 ~Ay~  466 (503)
                      ....
T Consensus       257 ~l~~  260 (269)
T COG2912         257 QLLE  260 (269)
T ss_pred             HHHH
Confidence            5543

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=89.20  E-value=5.5  Score=37.12  Aligned_cols=109  Identities=13%  Similarity=0.038  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--CC---hh----hHHHHHHHHHHHHHcCCHHHHHHHHHH----HHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG--DM---AT----MMEVLSTRASCYKEVGEYKKAVADCSK----VLE  449 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~--dd---pd----~A~aysNrAlcylrLGdyeeALedaek----ALk  449 (503)
                      .+..+|+.+++.+++-.++-.|++|+.+.++..  .+   .+    ...-..|+|..|..+|+-+-.++|++.    ++.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            466789999999999999999999998877642  11   11    223367899999999999999999965    455


Q ss_pred             cCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          450 QDDTNVSVLVQRALL-YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       450 LdPd~~kAlyrlA~A-y~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      |-|..++..   ..+ ...+|--..|+-.|   ++..|+ +++.+.+..+
T Consensus        83 LiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN-P~iA~~vq~i  125 (140)
T PF10952_consen   83 LIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN-PEIARLVQHI  125 (140)
T ss_pred             hccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC-HHHHHHHHhc
Confidence            656543321   222 22345555565555   466774 5555554443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=88.93  E-value=3.8  Score=38.12  Aligned_cols=71  Identities=13%  Similarity=0.191  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-Chh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-MAT----MMEVLSTRASCYKEVGEYKKAVADCSKVLEQ  450 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-dpd----~A~aysNrAlcylrLGdyeeALedaekALkL  450 (503)
                      .+-++--+...+...|+|++++..-.+||.++.+-+. ..+    -..+.++++..+-.+|+.++|+..|+++-++
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4556777888899999999999999999988776433 112    2345678999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=88.80  E-value=2.6  Score=48.24  Aligned_cols=107  Identities=8%  Similarity=0.113  Sum_probs=85.8

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-------CCh------hhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-------DMA------TMMEVLSTRASCYKEVGEYKKAVADCS  445 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-------ddp------d~A~aysNrAlcylrLGdyeeALedae  445 (503)
                      +.+..|.+-|..-++..+++.|+++.+.|+.+ |+.+       ..|      ....+|..++...-..|-++.....|+
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd  501 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD  501 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            46888999999999999999999999999865 3221       111      234456777777777888888888999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       446 kALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      +.|.|.-..++.-.+.|..|...+.++++.+.|++.+.|.+
T Consensus       502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence            99999888889999999999999999999999999888864

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.52  E-value=2.2  Score=35.99  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK  413 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk  413 (503)
                      .+..+...+..+-+.|+|.+|+.+|+++|+++-+
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            4667778888999999999999999999987654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=88.34  E-value=0.91  Score=48.02  Aligned_cols=82  Identities=11%  Similarity=0.052  Sum_probs=70.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ-RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr-lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      +.+..+|...+....+.+-|.+.-..|.+|+..+|.+++.|.. .+.-|....+++.+...|+++|+++|+++.+..+.-
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf  183 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF  183 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence            4567889988888888999999999999999999999998887 566788889999999999999999999987766655


Q ss_pred             HHH
Q 010717          497 RLT  499 (503)
Q Consensus       497 ~Lq  499 (503)
                      +++
T Consensus       184 r~E  186 (435)
T COG5191         184 RME  186 (435)
T ss_pred             HHH
Confidence            543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.11  E-value=3.9  Score=39.99  Aligned_cols=62  Identities=19%  Similarity=0.030  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 010717          400 AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYES  467 (503)
Q Consensus       400 AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~  467 (503)
                      |+.+|.+|+.+.|.      ....|+.+|.++...++.=+|+-+|-+++...--.+.+.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67888999888554      447888888888888888888888888886654446677777666666

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.74  E-value=5.3  Score=41.57  Aligned_cols=96  Identities=18%  Similarity=0.135  Sum_probs=81.5

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 010717          390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDDTNVSVLVQRALLYESM  468 (503)
Q Consensus       390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdPd~~kAlyrlA~Ay~~L  468 (503)
                      ++.+..+-..|+++-+.+|++      .|...++|.-|=.|+..++ ++.+-+++++.+++-+|++-++|..+-.+...+
T Consensus        52 I~~~~E~S~RAl~LT~d~i~l------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l  125 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRL------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELL  125 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHh------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence            345566778899999999998      6677899988888877765 468889999999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHHHhCCCCHHH
Q 010717          469 EKYK-LGAEDLRTVLKIDPSNRIA  491 (503)
Q Consensus       469 Gdye-eAle~LqkALkLDPen~eA  491 (503)
                      +++. .-++.++++|..|-+|--+
T Consensus       126 ~d~s~rELef~~~~l~~DaKNYHa  149 (318)
T KOG0530|consen  126 GDPSFRELEFTKLMLDDDAKNYHA  149 (318)
T ss_pred             cCcccchHHHHHHHHhccccchhh
Confidence            9988 8899999999988877444

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.66  E-value=1.7  Score=42.40  Aligned_cols=62  Identities=16%  Similarity=-0.018  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          440 AVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       440 ALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      |+.+|++|+.+.|..-..|..+|.++...++.=+|+=+|.+++...-..+.+...|..+.+.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999998765567777777666543

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=87.51  E-value=2  Score=49.57  Aligned_cols=79  Identities=14%  Similarity=0.157  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      ++.++|..+.....|++|.++|.+.-.+              .+...|++++.+|++    ++.+...-|++.+.+-.+|
T Consensus       798 A~r~ig~~fa~~~~We~A~~yY~~~~~~--------------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a  859 (1189)
T KOG2041|consen  798 AFRNIGETFAEMMEWEEAAKYYSYCGDT--------------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMA  859 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccch--------------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHH
Confidence            4444555555555555555555443321              234555555555554    2333333366655555566


Q ss_pred             HHHHHcCCHHHHHHHHH
Q 010717          463 LLYESMEKYKLGAEDLR  479 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~Lq  479 (503)
                      .++...|--++|+++|.
T Consensus       860 ~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  860 DMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             HHHHhhchHHHHHHHHH
Confidence            66655555555555543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.40  E-value=2  Score=32.60  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALk  483 (503)
                      .+.+|.+|+.+|+++.|.+.+++++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            46789999999999999999999984

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.36  E-value=10  Score=44.78  Aligned_cols=107  Identities=10%  Similarity=-0.037  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS---GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---  454 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~---~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---  454 (503)
                      +......+-....+.+|.+|..+..++....+..   ......++.-..++.+.+..+++++|++.++.++..-|..   
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            3445566777788899999999988887665431   1122345666778999999999999999999999876543   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          455 --VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       455 --~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                        ..++...+.+.+-.|++++|+...+.+.++.-.
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~  529 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ  529 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence              346777899999999999999999998888443

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=87.35  E-value=1.9  Score=46.08  Aligned_cols=100  Identities=14%  Similarity=0.116  Sum_probs=81.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHH
Q 010717          386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----DTNVSVLVQ  460 (503)
Q Consensus       386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----Pd~~kAlyr  460 (503)
                      .+...|+..++|.+|+.+....+.-+.+..+.....+++..-+-.|+.+.+..+|...+..|....     |-..++-+-
T Consensus       133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD  212 (411)
T KOG1463|consen  133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD  212 (411)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence            356778999999999999999988878877778888899999999999999999999998887542     433444443


Q ss_pred             H--HHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          461 R--ALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       461 l--A~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      +  |..|..-++|+-|..+|.++++=.
T Consensus       213 LqSGIlha~ekDykTafSYFyEAfEgf  239 (411)
T KOG1463|consen  213 LQSGILHAAEKDYKTAFSYFYEAFEGF  239 (411)
T ss_pred             HhccceeecccccchHHHHHHHHHccc
Confidence            3  788888899999999999998743

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.27  E-value=3.3  Score=46.09  Aligned_cols=95  Identities=19%  Similarity=0.182  Sum_probs=72.3

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCh--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-------
Q 010717          392 QKAGQYADAIKWLSWAVILLEKSGDMA--------TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD---DT-------  453 (503)
Q Consensus       392 fkqGDY~eAIk~YeKALeL~pk~~ddp--------d~A~aysNrAlcylrLGdyeeALedaekALkLd---Pd-------  453 (503)
                      +..|-|++|.++-+++|...++.+..+        ....++-++..|.+-.+++++|++.....+...   |.       
T Consensus       286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~  365 (629)
T KOG2300|consen  286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH  365 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence            356778889998889988877655433        234457788999999999999999887766543   33       


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      .+..++.+|.-....+.|+.|...|..++++--
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~  398 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE  398 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh
Confidence            245667778777888889999999999998753

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=87.05  E-value=3.3  Score=41.20  Aligned_cols=92  Identities=14%  Similarity=0.070  Sum_probs=66.3

Q ss_pred             HHhCCHHHHHHH-HHHHHHHHHhcCCChhhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717          392 QKAGQYADAIKW-LSWAVILLEKSGDMATMMEVLSTRASCYKE-----VGEYKKAVADCSKVLEQDDTNVSVLVQRALLY  465 (503)
Q Consensus       392 fkqGDY~eAIk~-YeKALeL~pk~~ddpd~A~aysNrAlcylr-----LGdyeeALedaekALkLdPd~~kAlyrlA~Ay  465 (503)
                      ...++|.++|+. |++|.++..++-++...+..++.++..++.     .+++.+|++.+..+..  -+.+.++.+++.++
T Consensus        38 ~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~  115 (248)
T KOG4014|consen   38 QLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLH  115 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhh
Confidence            344566666643 777777777666666677777778776654     3467888888888776  45788999999888


Q ss_pred             HHcC-------CHHHHHHHHHHHHHhC
Q 010717          466 ESME-------KYKLGAEDLRTVLKID  485 (503)
Q Consensus       466 ~~LG-------dyeeAle~LqkALkLD  485 (503)
                      ..-.       +.++|+++++++-.+.
T Consensus       116 ~~g~~~r~~dpd~~Ka~~y~traCdl~  142 (248)
T KOG4014|consen  116 WNGEKDRKADPDSEKAERYMTRACDLE  142 (248)
T ss_pred             ccCcCCccCCCCcHHHHHHHHHhccCC
Confidence            6533       2778899998887765

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.72  E-value=3.8  Score=41.69  Aligned_cols=61  Identities=15%  Similarity=-0.018  Sum_probs=34.5

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717          388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN  454 (503)
Q Consensus       388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~  454 (503)
                      ..++.+.....+||...++-++.      +|.++.....+=..|.-.|++++|+..++.|-.+.|+.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVka------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKA------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhc------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            34556666666666665555544      33444444444455555666666666666666666654

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=86.66  E-value=5.8  Score=48.28  Aligned_cols=108  Identities=21%  Similarity=0.155  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--------------------------
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE--------------------------  433 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr--------------------------  433 (503)
                      ..+..+.+|+.++..|+|.+|++.|.+|++++....|.-=.+.++-.++.|.+-                          
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~  320 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSS  320 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCc
Confidence            466788899999999999999999999999987665422223333333333211                          


Q ss_pred             -------------------------------------cCCHHHHHHHHHHHHHcC----CC--CHHHHHHHHHHHHHcC-
Q 010717          434 -------------------------------------VGEYKKAVADCSKVLEQD----DT--NVSVLVQRALLYESME-  469 (503)
Q Consensus       434 -------------------------------------LGdyeeALedaekALkLd----Pd--~~kAlyrlA~Ay~~LG-  469 (503)
                                                           ...+++|+.+|+++....    |.  ..+++++.+..+..+. 
T Consensus       321 ~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~  400 (1185)
T PF08626_consen  321 SSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHL  400 (1185)
T ss_pred             cCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhc
Confidence                                                 123677888888776332    32  2467778888877777 


Q ss_pred             -------------------CHHHHHHHHHHHHHhCCC
Q 010717          470 -------------------KYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       470 -------------------dyeeAle~LqkALkLDPe  487 (503)
                                         ...++.+.+.+++.+...
T Consensus       401 ~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~  437 (1185)
T PF08626_consen  401 SDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK  437 (1185)
T ss_pred             ccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh
Confidence                               778888888888876653

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.58  E-value=3.8  Score=47.97  Aligned_cols=105  Identities=16%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH------hcCCChhh-----------------HHHHHHHHHHHH
Q 010717          376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE------KSGDMATM-----------------MEVLSTRASCYK  432 (503)
Q Consensus       376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p------k~~ddpd~-----------------A~aysNrAlcyl  432 (503)
                      +.+..+..++..|+.+|++|+|++|+.+|-++|..++      +..+....                 ..-...+-.||.
T Consensus       363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYi  442 (933)
T KOG2114|consen  363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYI  442 (933)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHH
Confidence            4445677888999999999999999999999884321      21111000                 000122457888


Q ss_pred             HcCCHHHHHHHHHH------------HHHcCC--CCHH-HHH----------HHHHHHHHcCCHHHHHHHHHH
Q 010717          433 EVGEYKKAVADCSK------------VLEQDD--TNVS-VLV----------QRALLYESMEKYKLGAEDLRT  480 (503)
Q Consensus       433 rLGdyeeALedaek------------ALkLdP--d~~k-Aly----------rlA~Ay~~LGdyeeAle~Lqk  480 (503)
                      ++++.++-.++.++            ++++-.  +... |+|          .+=.++..+++|++|++++..
T Consensus       443 Klkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  443 KLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISS  515 (933)
T ss_pred             HhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhc
Confidence            88887776555433            333211  1111 111          134456778899999988764

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.56  E-value=1  Score=33.12  Aligned_cols=30  Identities=20%  Similarity=0.211  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      ++|.++|.+-+..++|++|+++|+++|+|.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=86.45  E-value=4.7  Score=42.49  Aligned_cols=100  Identities=17%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHH
Q 010717          386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-----DDTNVSVLVQ  460 (503)
Q Consensus       386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-----dPd~~kAlyr  460 (503)
                      .+...+++.++|.+|+....-.+.-+.+..+.+...++|..-+.+|.+..+..++...+..|..+     .|...++.+.
T Consensus       130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD  209 (421)
T COG5159         130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD  209 (421)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence            35667899999999999999888877887778888899999999999999999999888887754     3555555554


Q ss_pred             H--HHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          461 R--ALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       461 l--A~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                      +  |..++.-.+|.-|..+|-++++-.
T Consensus       210 L~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         210 LLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             HhccceeeccccchhHHHHHHHHHhcc
Confidence            4  777888889999999988887643

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.40  E-value=2.2  Score=42.33  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHH
Q 010717          397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT----NVSVLVQRALLYESMEKYK  472 (503)
Q Consensus       397 Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd----~~kAlyrlA~Ay~~LGdye  472 (503)
                      =++|.+.|.++-.    .+ .-..+++.+.+|..|. ..+.++|++.+.++|++...    +++.+.-++.+|+.+++++
T Consensus       122 d~~A~~~fL~~E~----~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  122 DQEALRRFLQLEG----TP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             cHHHHHHHHHHcC----CC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            3556666554431    11 2345778888877775 66788888888888887532    4778888888888888888


Q ss_pred             HHHH
Q 010717          473 LGAE  476 (503)
Q Consensus       473 eAle  476 (503)
                      +|.-
T Consensus       196 ~AYi  199 (203)
T PF11207_consen  196 QAYI  199 (203)
T ss_pred             hhhh
Confidence            8754

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=86.23  E-value=4  Score=45.09  Aligned_cols=61  Identities=16%  Similarity=0.166  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV  447 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA  447 (503)
                      ..+-....+.-+|.+|+|.+++-+-.+..++      .| ...+|-.+|.|++...+|++|..++...
T Consensus       461 eian~LaDAEyLysqgey~kc~~ys~WL~~i------aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKI------AP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            3455566788889999999999999999988      34 4688999999999999999999998654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=86.11  E-value=4.3  Score=47.75  Aligned_cols=79  Identities=14%  Similarity=0.083  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHcCCCCHHHHHH----------HHH
Q 010717          404 LSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV----------LEQDDTNVSVLVQ----------RAL  463 (503)
Q Consensus       404 YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA----------LkLdPd~~kAlyr----------lA~  463 (503)
                      +.+|+++.+. .+.-+.-..|++.+..+...++.+.||++|+|+          |+-+|...+-|.+          -|+
T Consensus       842 w~eA~eiAE~-~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq  920 (1416)
T KOG3617|consen  842 WSEAFEIAET-KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ  920 (1416)
T ss_pred             HHHHHHHHhh-ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence            3445555432 223344567888999888999999999999874          3334544444443          377


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 010717          464 LYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       464 Ay~~LGdyeeAle~LqkALk  483 (503)
                      .+...|+.+.|+..|..+-.
T Consensus       921 YlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  921 YLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHhcccchHHHHHHHHHhhh
Confidence            88888998888888877644

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.10  E-value=15  Score=41.32  Aligned_cols=99  Identities=16%  Similarity=0.092  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-C---C----------------hhhHHHHHHHHHHHHHcCCHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-D---M----------------ATMMEVLSTRASCYKEVGEYKKA  440 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-d---d----------------pd~A~aysNrAlcylrLGdyeeA  440 (503)
                      +-++..-|..+...+..+.|.++++++++++.+.. .   .                .....++..++.|.+-++++.+|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            33455557888888888899999999999887643 0   0                01233455678888899999999


Q ss_pred             HHHHHHHHHcC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          441 VADCSKVLEQD---D------TNVSVLVQRALLYESMEKYKLGAEDLR  479 (503)
Q Consensus       441 LedaekALkLd---P------d~~kAlyrlA~Ay~~LGdyeeAle~Lq  479 (503)
                      ....+.+....   |      -.+..+|..|..+...|+.+.|+..|+
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            98888777653   2      236789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.10  E-value=4  Score=34.36  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE  412 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p  412 (503)
                      .+..+..++..+-+.|+|++|+.+|.+||+++-
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~   37 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI   37 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            466777889999999999999999999998754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.05  E-value=10  Score=40.52  Aligned_cols=66  Identities=15%  Similarity=0.086  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE--VGEYKKAVADCSKVLE  449 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr--LGdyeeALedaekALk  449 (503)
                      ........+..+|...+|..|.++|...+..++   .... ...+..++.+|..  .-+|++|.+.+++++.
T Consensus       130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~---~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  130 FGDREWRRAKELFNRYDYGAAARILEELLRRLP---GREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---chhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            445567788999999999999999999886422   1122 5677777777765  4568999999987765

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.96  E-value=7.1  Score=42.65  Aligned_cols=111  Identities=19%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHH--HHHHHHH-------HHcCCH-HHHHHHHHHHHHc
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVL--STRASCY-------KEVGEY-KKAVADCSKVLEQ  450 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~ay--sNrAlcy-------lrLGdy-eeALedaekALkL  450 (503)
                      .....|..++..|+|.+|++.|+..|..++-.  .......++.  ..++.-|       ++.++. +..+++.++.++|
T Consensus       206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL  285 (422)
T PF06957_consen  206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL  285 (422)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence            34557899999999999999999998776521  1111112221  1111111       222221 1222333333333


Q ss_pred             ---------CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          451 ---------DDTNVSVLVQRALL-YESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       451 ---------dPd~~kAlyrlA~A-y~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                               .|.+...-++.|+- .+++++|.-|....++.|++.|....+++
T Consensus       286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q  338 (422)
T PF06957_consen  286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ  338 (422)
T ss_dssp             HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence                     33333333444443 46689999999999999999998865443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=84.93  E-value=2.7  Score=30.47  Aligned_cols=32  Identities=16%  Similarity=0.054  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 010717          456 SVLVQRALLYESMEKYKLGAED--LRTVLKIDPS  487 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~--LqkALkLDPe  487 (503)
                      +.++.+|..+...|+|++|++.  |+-+..++++
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3455566666666666666666  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.91  E-value=19  Score=35.77  Aligned_cols=99  Identities=9%  Similarity=-0.048  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL-EQDDTNVSVLVQR  461 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL-kLdPd~~kAlyrl  461 (503)
                      +....+.+...+|+-.+|+..|.++-.-.+ .+ ....-.+...-+.++...|-|++-....+..- .-+|--..+.-.+
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~dt~-~P-~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL  173 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAADTS-IP-QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL  173 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhccCC-Cc-chhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence            445567788889999999999988754311 11 12223344555677777888887666554322 1123334456667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 010717          462 ALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       462 A~Ay~~LGdyeeAle~LqkALk  483 (503)
                      |.+-++.|++.+|..+|..+..
T Consensus       174 glAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc
Confidence            8889999999999999998776

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=84.76  E-value=10  Score=40.75  Aligned_cols=102  Identities=12%  Similarity=-0.076  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE--------------YKKAVADCSKVL  448 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd--------------yeeALedaekAL  448 (503)
                      .++.+|+.+|..+||+.|+..|+.+..-...+..--..+.++.-.+.|++..+.              ++.|+..|.++-
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            467789999999999999999999886433222122344455566777776663              234444454431


Q ss_pred             H----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          449 E----QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       449 k----LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      .    ....-.++.+..+.++..++.|.+|...+-++...
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            1    11123556667788888999999988887777765

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=84.66  E-value=4.5  Score=36.57  Aligned_cols=64  Identities=13%  Similarity=0.172  Sum_probs=50.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHH
Q 010717          427 RASCYKEVGEYKKAVADCSKVLEQDDTNV---SVLVQRALLYESMEK-----------YKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       427 rAlcylrLGdyeeALedaekALkLdPd~~---kAlyrlA~Ay~~LGd-----------yeeAle~LqkALkLDPen~e  490 (503)
                      ++.-+++.|++-+|++..+..+..+.+..   -.++..|.+++.+..           .-.++++|.++..+.|....
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~   79 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH   79 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH
Confidence            56778899999999999999998887665   456667888877653           34488999999999987643

>TIGR02710 CRISPR-associated protein, TIGR02710 family

Probab=84.22  E-value=12  Score=40.41  Aligned_cols=64  Identities=17%  Similarity=0.053  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG--EYKKAVADCS  445 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG--dyeeALedae  445 (503)
                      ......++..++.+.+|..|.+.|.+++..... +........+..++.||....  ++++|.+.++
T Consensus       130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~  195 (380)
T TIGR02710       130 GNTEQGYARRAINAFDYLFAHARLETLLRRLLS-AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN  195 (380)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccC-hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence            334445677899999999999999999865221 223456777888888887654  5789999888

Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=83.16  E-value=5.4  Score=37.86  Aligned_cols=53  Identities=11%  Similarity=0.146  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          437 YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       437 yeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      .+..++..++.++..| ++..+.+++.++..+|+.++|.+..+++..+.|.+.-
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~  179 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEF  179 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHH
Confidence            4455666677777777 6788999999999999999999999999999995433

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.97  E-value=1.7  Score=47.04  Aligned_cols=59  Identities=12%  Similarity=0.140  Sum_probs=45.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          425 STRASCYKEVGEYKKAVADCSKVL--------EQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       425 sNrAlcylrLGdyeeALedaekAL--------kLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALk  483 (503)
                      ..+..++..+|||..|++.++..-        +.-+.+...+|..|.+|+-++||.+|++.|..+|-
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778999999999876421        11244677899999999999999999999988764

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.58  E-value=3.9  Score=44.37  Aligned_cols=63  Identities=21%  Similarity=0.115  Sum_probs=46.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          386 NKGVDNQKAGQYADAIKWLSWAVILLEK---SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk---~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      -+-.++.-.|||..|++.++.. ++.++   ....+-...+++..|.||+.+++|.+|++.+..+|.
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446677789999999987542 22111   111344567788899999999999999999999874

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.42  E-value=5  Score=42.27  Aligned_cols=62  Identities=15%  Similarity=0.095  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVL  482 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkAL  482 (503)
                      ..++..-+..|++.|.+.+|++.+++++.++|-+-..+..+-.+|..+||--.|+..|++.-
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34555668889999999999999999999999999999999999999999777777666543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=82.33  E-value=8.1  Score=46.14  Aligned_cols=95  Identities=12%  Similarity=0.023  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCCHHHHH
Q 010717          403 WLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS-------VLVQRALLYESMEKYKLGA  475 (503)
Q Consensus       403 ~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k-------AlyrlA~Ay~~LGdyeeAl  475 (503)
                      .|.+||.-..+....+.-.--|..-|++|.++++|+|-++.+..|++..|.++.       ..||+-.+++..  -..|+
T Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  611 (932)
T PRK13184        534 DFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREAL  611 (932)
T ss_pred             HHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            344444433332223333345778899999999999999999999999988865       344554444443  35678


Q ss_pred             HHHHHHHHhCCCCHHH---HHHHHHHH
Q 010717          476 EDLRTVLKIDPSNRIA---RSTIHRLT  499 (503)
Q Consensus       476 e~LqkALkLDPen~eA---k~~La~Lq  499 (503)
                      ....-++.+.|+....   ++.+..++
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (932)
T PRK13184        612 VFMLLALWIAPEKISSREEEKFLEILY  638 (932)
T ss_pred             HHHHHHHHhCcccccchHHHHHHHHHH
Confidence            8888899999986443   44444443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.27  E-value=1.6  Score=28.85  Aligned_cols=23  Identities=13%  Similarity=-0.091  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLR  479 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~Lq  479 (503)
                      +++.+|.+|..+|++++|++.++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45555666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.90  E-value=9.3  Score=32.02  Aligned_cols=33  Identities=15%  Similarity=0.286  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE  412 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p  412 (503)
                      .+..+...|..+-+.|+|.+|+.+|.++|+++-
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~   37 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM   37 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            455677788888999999999999999998754

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.80  E-value=9.2  Score=37.99  Aligned_cols=69  Identities=9%  Similarity=0.095  Sum_probs=47.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHhh
Q 010717          431 YKEVGEYKKAVADCSKVLEQD-DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN----RIARSTIHRLTKM  501 (503)
Q Consensus       431 ylrLGdyeeALedaekALkLd-Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen----~eAk~~La~Lqkl  501 (503)
                      |.+.|+ ++|++.+-++-... -+.++..+.+|..|. ..+.++|+..|.++|.+...+    +++...|..+...
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~  190 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK  190 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            344455 56666654433221 256888888888877 458899999999999997654    7777777766543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.80  E-value=15  Score=43.55  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHH------------HHcCCHHHH--HH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK----SGDMATMMEVLSTRASCY------------KEVGEYKKA--VA  442 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk----~~ddpd~A~aysNrAlcy------------lrLGdyeeA--Le  442 (503)
                      ...-.++|..+...|++.+|+++|...|-.++-    ...+...+.-+..++.-|            +.....+++  +.
T Consensus       991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElA 1070 (1202)
T KOG0292|consen  991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELA 1070 (1202)
T ss_pred             HHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHH
Confidence            334456788899999999999999999865542    111222233333333222            112234444  22


Q ss_pred             HHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          443 DCSKVLEQDDTNVS-VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       443 daekALkLdPd~~k-AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      .|=.-.+|.|-+.. ++...-.+++++++|+.|....++.|++.|..+.++..-.
T Consensus      1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rk 1125 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARK 1125 (1202)
T ss_pred             HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence            22222244454433 3333345688999999999999999999998766654443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=81.79  E-value=2.7  Score=47.24  Aligned_cols=66  Identities=18%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          436 EYKKAVADCSKVLEQDDTNVSVLVQRALLYESM---EKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       436 dyeeALedaekALkLdPd~~kAlyrlA~Ay~~L---GdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +...|+.+|.+++..-|.....|.+++.+|++.   ++.-.|+.++..+++++|-...++..|.++...
T Consensus       389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e  457 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE  457 (758)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH
Confidence            456889999999999999999999999999886   466779999999999999887777777666544

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=81.54  E-value=10  Score=40.74  Aligned_cols=112  Identities=16%  Similarity=0.221  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHcCCCCHHHHHHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK--AVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyee--ALedaekALkLdPd~~kAlyrlA  462 (503)
                      ..-|..+...+||..|..||-+|.|-.....++..-...+--+-+|-..++..++  ++-..+.++++.-....++...+
T Consensus       213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA  292 (411)
T KOG1463|consen  213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA  292 (411)
T ss_pred             HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence            3446667777999999999999998654444333334444445667777777665  45556778888888899999999


Q ss_pred             HHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          463 LLYES--MEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       463 ~Ay~~--LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .++..  +++|++|+..|..-|.-||   .++..+..+.
T Consensus       293 eA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Ly  328 (411)
T KOG1463|consen  293 EAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLY  328 (411)
T ss_pred             HHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHH
Confidence            88854  7899999999998887665   4454444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=81.40  E-value=23  Score=37.27  Aligned_cols=89  Identities=19%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHH---------------HHHHHHh-------------cCCChhhHHHHHHHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSW---------------AVILLEK-------------SGDMATMMEVLSTRASCYK  432 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeK---------------ALeL~pk-------------~~ddpd~A~aysNrAlcyl  432 (503)
                      .++...++.+|...|++++|...|..               .|+++.+             ...+|++..+.+.++..|.
T Consensus       168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~  247 (304)
T COG3118         168 SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLH  247 (304)
T ss_pred             chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            55677788899999998887776643               2444332             1236778889999999999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHcC
Q 010717          433 EVGEYKKAVADCSKVLEQDDTNV--SVLVQRALLYESME  469 (503)
Q Consensus       433 rLGdyeeALedaekALkLdPd~~--kAlyrlA~Ay~~LG  469 (503)
                      ..|++++|++.+-..++.+..+-  .+.-++-.++...|
T Consensus       248 ~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         248 LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            99999999999988888775542  33333444444444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=81.12  E-value=12  Score=42.39  Aligned_cols=94  Identities=14%  Similarity=0.028  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          400 AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLR  479 (503)
Q Consensus       400 AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~Lq  479 (503)
                      |+..|..-+.+   .+..+...-.+. ++..+..+++...++...+.++..+|++..++.+++.++...+....++..+.
T Consensus        50 ~~~a~~~~~~~---~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~  125 (620)
T COG3914          50 AIYALLLGIAI---NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS  125 (620)
T ss_pred             HHHHHHccCcc---CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence            55555555543   122333333333 78888899999999999999999999999999999999999888777777666


Q ss_pred             H-HHHhCCCCHHHHHHHHH
Q 010717          480 T-VLKIDPSNRIARSTIHR  497 (503)
Q Consensus       480 k-ALkLDPen~eAk~~La~  497 (503)
                      + ++++.|.+.++...+..
T Consensus       126 ~~a~~~~~~~~~~~~~~~~  144 (620)
T COG3914         126 EIAEWLSPDNAEFLGHLIR  144 (620)
T ss_pred             HHHHhcCcchHHHHhhHHH
Confidence            6 89999999888777633

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=80.87  E-value=12  Score=30.05  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE  412 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p  412 (503)
                      .+..+...|..+-..|+|.+|+++|.+|++++-
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            355677788888899999999999999998654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=80.35  E-value=8.2  Score=41.39  Aligned_cols=80  Identities=14%  Similarity=0.067  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQD--DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLd--Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .+-.|++.+..+..-.+.++...+.....-  ..+.-.+-.+|..+..+|+.++|.+.|++++.+.++..+....+.++.
T Consensus       330 vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~  409 (415)
T COG4941         330 VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD  409 (415)
T ss_pred             eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            355677777776666777777776655431  223345556899999999999999999999999999888877777665


Q ss_pred             hh
Q 010717          500 KM  501 (503)
Q Consensus       500 kl  501 (503)
                      .+
T Consensus       410 ~l  411 (415)
T COG4941         410 RL  411 (415)
T ss_pred             Hh
Confidence            44

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=80.08  E-value=6.6  Score=36.69  Aligned_cols=53  Identities=17%  Similarity=0.105  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKL  473 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyee  473 (503)
                      ......++.-.+..|+|.-|++.++.++..+|++.++...++.+|..++.-.+
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            45666788888889999999999999999999998888888888888876444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	503
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		3e-06
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		3e-06
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-05
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-04
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-04
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		2e-04
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		5e-04

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 396 QYADAIKWLSWAVILLEKSGDMAT--MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453
           QY   + WL     L EK    +   ++      A CY ++ EY KAV  C K L  D  
Sbjct: 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349
Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
           N   L +R      M +++    D   VL+++P N+ AR  I    K
Sbjct: 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 396 QYADAIKWLSWAVILLEKSGDMAT--MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453
           QY   + WL     L EK    +   ++      A CY ++ EY KAV  C K L  D  
Sbjct: 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349
Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
           N   L +R      M +++    D   VL+++P N+ AR  I    K
Sbjct: 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 396

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
           KNKG +  K G Y  A++  + AV   ++  + A +    S RA+C  ++ E+++A+ DC
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAV---KRDPENAILY---SNRAACLTKLMEFQRALDDC 70
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495
              +  D   +   +++A    +M ++          L++DPSN  AR  +
Sbjct: 71  DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
           KNKG +  + G Y  A+K  + A+    K        ++ S RA+CY ++ E++ A+ DC
Sbjct: 20  KNKGNECFQKGDYPQAMKHYTEAIKRNPKDA------KLYSNRAACYTKLLEFQLALKDC 73
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497
            + ++ + T +    ++A   E+M+ Y    +  +  L +D S + A     R
Sbjct: 74  EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
           + +G +  K G Y  A+   + A+ L     D A +      RA+C+ ++ +Y KA  + 
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHR---NRAACHLKLEDYDKAETEA 88
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499
           SK +E+D  +V  L +R+   E + +      DL+  + ++P N++ +  +  ++
Sbjct: 89  SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLS--TRASCYKEVGEYKKAVADC 444
           +G   Q   QY   + WL +      +    A  + + S    A C+ ++  +  A+  C
Sbjct: 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495
           +K LE D  N   L +R   + ++  ++L   D + VL++ P+N+ A++ +
Sbjct: 220 NKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 396 QYADAIKWLSWAVILLEKSGDMATMMEVLS--TRASCYKEVGEYKKAVADCSKVLEQDDT 453
           QY   + WL +      +    A  + + S    A C+ ++  +  A+  C+K LE D  
Sbjct: 169 QYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228
Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495
           N   L +R   + ++  ++L   D + VL++ P+N+ A++ +
Sbjct: 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	503
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	8e-26
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-21
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-20
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-20
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-20
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	9e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-18
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	8e-17
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	9e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-13
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-13
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  102 bits (255), Expect = 8e-26
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 358 GGTDDGGTTTELEGLP-PPPAGVTGAAA---KNKGVDNQ--KAGQYADAIKWLSWAVILL 411
           G +   G T    G P P PA    ++    + +G  N+  K G Y  A+   + A+ L 
Sbjct: 1   GSSGSSGMTVSGPGTPEPRPATPGASSVEQLRKEG--NELFKCGDYGGALAAYTQALGLD 58

Query: 412 EKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKY 471
               D A    +   RA+C+ ++ +Y KA  + SK +E+D  +V  L +R+   E + + 
Sbjct: 59  ATPQDQAV---LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL 115

Query: 472 KLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
                DL+  + ++P N++ +  +  ++ 
Sbjct: 116 DQAVLDLQRCVSLEPKNKVFQEALRNISG 144

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 89.4 bits (222), Expect = 4e-21
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 373 PPPPAGVTGA-AAKNKGVDNQ--KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRAS 429
           PP    +  A   K +   N   KA  Y +AIK+ S A   +E +   A        R+ 
Sbjct: 4   PPADGALKRAEELKTQA--NDYFKAKDYENAIKFYSQA---IELNPSNAI---YYGNRSL 55

Query: 430 CYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR 489
            Y     Y  A+ D ++ +E D   +    +RA    ++ K++    D  TV+K+ P ++
Sbjct: 56  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115

Query: 490 IARSTIHRLTKMV 502
            A+       K+V
Sbjct: 116 DAKMKYQECNKIV 128

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 88.1 bits (219), Expect = 5e-21
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 10/120 (8%)

Query: 383 AAKNKGVDNQ--KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKA 440
             KNKG  N+  + G Y  A+K  + A   ++++   A    + S RA+CY ++ E++ A
Sbjct: 18  MVKNKG--NECFQKGDYPQAMKHYTEA---IKRNPKDAK---LYSNRAACYTKLLEFQLA 69

Query: 441 VADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
           + DC + ++ + T +    ++A   E+M+ Y    +  +  L +D S + A     R   
Sbjct: 70  LKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 86.9 bits (216), Expect = 8e-21
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 383 AAKNKGVDNQ--KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKA 440
             KNKG  N+  K G Y  A++  + A   +++  + A    + S RA+C  ++ E+++A
Sbjct: 15  EEKNKG--NEYFKKGDYPTAMRHYNEA---VKRDPENAI---LYSNRAACLTKLMEFQRA 66

Query: 441 VADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
           + DC   +  D   +   +++A    +M ++          L++DPSN  AR  +    +
Sbjct: 67  LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 383 AAKNKGVDNQ--KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKA 440
             K +G  N+     +Y +A      A   + ++  +A      + RA CY ++ + ++A
Sbjct: 11  ELKEQG--NRLFVGRKYPEAAACYGRA---ITRNPLVAVY---YTNRALCYLKMQQPEQA 62

Query: 441 VADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           +ADC + LE D  +V            ME Y     +L+    +    R+ 
Sbjct: 63  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 85.4 bits (212), Expect = 3e-20
 Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 383 AAKNKGVDNQ--KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKA 440
            A+ +G   +      + +A+K  +     ++++ + A      S RA+   ++  + +A
Sbjct: 6   EARLEG--KEYFTKSDWPNAVKAYTEM---IKRAPEDARG---YSNRAAALAKLMSFPEA 57

Query: 441 VADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
           +ADC+K +E+D   V   +++A    ++++Y    E L      D       S
Sbjct: 58  IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 86.3 bits (214), Expect = 4e-20
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 16/130 (12%)

Query: 385 KNKGVDNQ--KAGQYADAIKWLSWAVILLEKSGDMATMME------------VLSTRASC 430
           + KG  N+      Y +AI     A+  L+         E            + +  + C
Sbjct: 15  RQKG--NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQC 72

Query: 431 YKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490
           Y  +G+  +A    S+VL++++TN   L +RA    +  K     EDL+ +L+  P+   
Sbjct: 73  YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132

Query: 491 ARSTIHRLTK 500
             +   ++  
Sbjct: 133 VVAREMKIVT 142

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 86.0 bits (213), Expect = 1e-19
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 385 KNKGVDNQ--KAGQYADAIKWLSWAVILLEKSGDM----------ATMMEVLSTRASCYK 432
           K +G  N+  K  +  +AI     A+     + +              +      A+CY 
Sbjct: 42  KEEG--NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 99

Query: 433 EVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492
           +  +Y KA+   SKVL+ D  NV  L +  +        +   E+L     ++P+N   R
Sbjct: 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159

Query: 493 STIHRLTK 500
           ++      
Sbjct: 160 NSYELCVN 167

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 393 KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD 452
           K   Y  AI   S  V+ ++K+   A     L          G  ++A  +  K    + 
Sbjct: 100 KNKDYPKAIDHAS-KVLKIDKNNVKA-----LYKLGVANMYFGFLEEAKENLYKAASLNP 153

Query: 453 TNVSVLVQRALLYESMEKYK 472
            N+ +     L    +++ +
Sbjct: 154 NNLDIRNSYELCVNKLKEAR 173

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
             K +G +  K   +  A+ +   A   +E +   A        RA+ Y ++G Y  AV 
Sbjct: 14  RLKTEGNEQMKVENFEAAVHFYGKA---IELNPANAV---YFCNRAAAYSKLGNYAGAVQ 67

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
           DC + +  D        +  L   S+ K+       +  L++DP N   +S +      +
Sbjct: 68  DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 382 AAAKNKGVDNQ--KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK 439
              K KG  N+    G   DA++  S A   ++          + S R++ Y + G+Y+K
Sbjct: 5   NELKEKG--NKALSVGNIDDALQCYSEA---IKLDPHNHV---LYSNRSAAYAKKGDYQK 56

Query: 440 AVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499
           A  D  K ++          ++A   E + +++         LK + +N   +  +  + 
Sbjct: 57  AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116

Query: 500 K 500
            
Sbjct: 117 A 117

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 84.6 bits (209), Expect = 4e-18
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSG-----DMATMMEVLST----RASCYKEVG 435
           K +G    K G+Y  A+      V  LE        +      +        A C+ ++ 
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210

Query: 436 EYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495
            +  A+  C+K LE D  N   L +R   + ++  ++L   D + VL++ P+N+ A++ +
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270

Query: 496 HRLTK 500
               +
Sbjct: 271 AVCQQ 275

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.5 bits (212), Expect = 4e-18
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 6/118 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
                G     AGQ ADA+     A   ++   D          RA+ +  +G+ K A+ 
Sbjct: 28  KHLELGKKLLAAGQLADALSQFHAA---VDGDPDNY---IAYYRRATVFLAMGKSKAALP 81

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
           D +KV++      +  +QR  L     K     +D + VLK +PS    +    +L K
Sbjct: 82  DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.1 bits (211), Expect = 6e-18
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 2/116 (1%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
                   +  + G+Y DA       +    +       +        C+ +  +  +A+
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAI 315

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497
             CS+VL+ +  NV+ L  RA  Y   E Y    +D  T  + + +++  R  + +
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
             +++ ++   +G Y  AI +L      LE     A   E+   RA C+ + GE +KA++
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKI---LEVCVWDA---ELRELRAECFIKEGEPRKAIS 198

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
           D     +  + N     + + LY  +  ++L   ++R  LK+D  ++   +  ++  K +
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA-HYKQVKKL 257

Query: 503 D 503
           +
Sbjct: 258 N 258

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 17/108 (15%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           + GVD      Y  ++                   +E            G+   A++   
Sbjct: 8   SSGVDLGTENLYFQSMA-----------------DVEKHLELGKKLLAAGQLADALSQFH 50

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
             ++ D  N     +RA ++ +M K K    DL  V+++      AR 
Sbjct: 51  AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVIL-------LEKSGDMATMMEVLS--TRASCYKEVGE 436
            +G    K G+  +A       +          E    +    E+    ++A      G+
Sbjct: 99  QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158

Query: 437 YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           Y  A+A   K+LE    +  +   RA  +    + +    DL+   K+   N  A
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 374 PPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE 433
           P  A  T  + +       K  +  +AI+  S  + +   +      +  L  RA  Y  
Sbjct: 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN------VNALKDRAEAYLI 341

Query: 434 VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR 489
              Y +A+ D     E ++ +  +          +++ +         +K +   +
Sbjct: 342 EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 18/123 (14%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
            +     K G+   AI  L  A  L   +       E     ++ Y ++G+++ ++++  
Sbjct: 182 LRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQLGDHELSLSEVR 235

Query: 446 KVLEQDDTNVSV------------LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
           + L+ D  +               L++ A       +Y        +V+K +PS      
Sbjct: 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV 295

Query: 494 TIH 496
              
Sbjct: 296 RSK 298

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 2/112 (1%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
                   +  + G+Y DA       +    +       +        C+ +  +  +A+
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAI 292

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
             CS+VL+ +  NV+ L  RA  Y   E Y    +D     + + +++  R 
Sbjct: 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.2 bits (201), Expect = 6e-17
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 6/118 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
                G     AGQ ADA+     A   ++   D          RA+ +  +G+ K A+ 
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAA---VDGDPDNY---IAYYRRATVFLAMGKSKAALP 58

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
           D +KV+       +  +QR  L     K     +D + VLK +PS +  +    +L K
Sbjct: 59  DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           ++ +D      Y  AI +L      LE     A   E+   RA C+ + GE +KA++D  
Sbjct: 125 SQALDAFDGADYTAAITFLDKI---LEVCVWDA---ELRELRAECFIKEGEPRKAISDLK 178

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
              +    N     + + LY  +  ++L   ++R  LK+D  ++   +
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVIL-------LEKSGDM--ATMMEVLSTRASCYKEVGE 436
            +G    K G+  +A       +          E    +  A  M+ L ++A    +  +
Sbjct: 76  QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135

Query: 437 YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA---RS 493
           Y  A+    K+LE    +  +   RA  +    + +    DL+   K+   N  A    S
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 494 TIHRLTKMVD 503
           T++      +
Sbjct: 196 TLYYQLGDHE 205

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 15/72 (20%), Positives = 26/72 (36%)

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481
           E            G+   A++     ++ D  N     +RA ++ +M K K    DL  V
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 482 LKIDPSNRIARS 493
           + +      AR 
Sbjct: 64  IALKMDFTAARL 75

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 18/123 (14%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
            +     K G+   AI  L  A    +   D     E     ++ Y ++G+++ ++++  
Sbjct: 159 LRAECFIKEGEPRKAISDLKAA---SKLKSDNT---EAFYKISTLYYQLGDHELSLSEVR 212

Query: 446 KVLEQDDTNVSV------------LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
           + L+ D  +               L++ A       +Y        +V+K +PS      
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272

Query: 494 TIH 496
              
Sbjct: 273 RSK 275

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 18/123 (14%)

Query: 386 NKGVDNQKAGQYADAIKWL----------SWAVILLEKSGDMATMMEVLSTRASCYKEVG 435
                  + G +  ++  +                 ++   +  ++E     A      G
Sbjct: 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE----SAEELIRDG 248

Query: 436 EYKKAVADCSKVLEQD----DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
            Y  A +    V++ +    +  V    +    +   EK          VL+++P N  A
Sbjct: 249 RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308

Query: 492 RST 494
              
Sbjct: 309 LKD 311

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 374 PPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE 433
           P  A  T  + +       K  +  +AI+  S     L+   D       L  RA  Y  
Sbjct: 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV---LQMEPDNV---NALKDRAEAYLI 318

Query: 434 VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYK 472
              Y +A+ D     E ++ +  +          +++ +
Sbjct: 319 EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 80.0 bits (197), Expect = 8e-17
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
             K +G       +Y +A      A   + ++  +A      + RA CY ++ + ++A+A
Sbjct: 6   ELKEQGNRLFVGRKYPEAAACYGRA---ITRNPLVAVY---YTNRALCYLKMQQPEQALA 59

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           DC + LE D  +V            ME Y     +L+    +    R+ 
Sbjct: 60  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLE------KSGDMATMMEVLST-----RASCYKE 433
           K  G    K  +  +A++    A+  +         G    M   +        A+C  +
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK 242

Query: 434 VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
           +  Y +A+  C+ VL +++ N   L +R      + +     +D R   K  P ++  R 
Sbjct: 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302

Query: 494 TIHRLTK 500
            +  L +
Sbjct: 303 ELRALAE 309

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 26/117 (22%), Positives = 37/117 (31%), Gaps = 13/117 (11%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
             K  G D  K   +  A+K    A    E      T    ++ +A+ Y E G+Y K   
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKA---KELDPTNMT---YITNQAAVYFEKGDYNKCRE 59

Query: 443 DCSKVLEQDDTNVSVLVQ-------RALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492
            C K +E    N     Q           Y   EKYK         L    +  + +
Sbjct: 60  LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 430 CYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR 489
            YK+  ++  A+    K  E D TN++ +  +A +Y     Y    E     +++   NR
Sbjct: 14  AYKK-KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72

Query: 490 IARSTI 495
                I
Sbjct: 73  EDYRQI 78

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 13/117 (11%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A K+ G    K   +  A      A   +E      T     + +A+ Y E  ++ + V 
Sbjct: 10  AEKDLGNAAYKQKDFEKAHVHYDKA---IELDPSNIT---FYNNKAAVYFEEKKFAECVQ 63

Query: 443 DCSKVLEQDDTNVSVLVQ-------RALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492
            C K +E      +               ++      L  +     L       + +
Sbjct: 64  FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 430 CYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR 489
            YK+  +++KA     K +E D +N++    +A +Y   +K+    +     +++    R
Sbjct: 18  AYKQ-KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76

Query: 490 IARSTI 495
                I
Sbjct: 77  ADYKLI 82

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 70.9 bits (174), Expect = 9e-15
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 373 PPPPAGVTGA-AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCY 431
           P   A    +   K++G       +Y+ AI   + A   L  +         LS RA+ Y
Sbjct: 2   PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQA---LSIAPANPI---YLSNRAAAY 55

Query: 432 KEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
              G+++KA  D       D        +  L    M  YK   E     ++ + +    
Sbjct: 56  SASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 10/116 (8%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAV----------ILLEKSGDMATMMEVLSTRASCYKEVG 435
            K     +AGQ   A+ +    +                 +     ++ +  A  YK+  
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 436 EYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
            Y KA     ++L++   NV  L   A +     + K        +L+++  N  A
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 7/111 (6%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
            A    +  +K   Y  A  +       L+K+ +     + L   A      G+ K A+ 
Sbjct: 56  LATELALAYKKNRNYDKAYLFYKEL---LQKAPNNV---DCLEACAEMQVCRGQEKDALR 109

Query: 443 DCSKVLEQDDTNVSVLVQRA-LLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492
              K+L+ +  N++  +      Y + E+ K   E     L      + AR
Sbjct: 110 MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 8/117 (6%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE-YKKAVADC 444
                    GQ  DA++     + L   +      +       + Y    E  KK +   
Sbjct: 93  ACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETD 146

Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501
            K L           +  L      +Y+     L+ V+   PS   A+ T+ ++ ++
Sbjct: 147 YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKILRI 202

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 16/90 (17%)

Query: 418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD----------------DTNVSVLVQR 461
              ++ +  + S   E G+  +AV+   + +  +                + +  +  + 
Sbjct: 1   GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60

Query: 462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           AL Y+    Y       + +L+  P+N   
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 71.4 bits (176), Expect = 4e-14
 Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
            A+ +G +      + +A+K  +     ++++ + A      S RA+   ++  + +A+A
Sbjct: 141 EARLEGKEYFTKSDWPNAVKAYTEM---IKRAPEDA---RGYSNRAAALAKLMSFPEAIA 194

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           DC+K +E+D   V   +++A    ++++Y    E L      D      
Sbjct: 195 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
             K +G    KA Q+ +AI+  + A    E   D+      L+ RA+   E GEY+ A++
Sbjct: 7   KEKAEGNKFYKARQFDEAIEHYNKA---WELHKDIT----YLNNRAAAEYEKGEYETAIS 59

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
             +  +EQ     +     +  +  +        DL+  ++    +   
Sbjct: 60  TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 11/110 (10%), Positives = 26/110 (23%), Gaps = 7/110 (6%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
           A  K       + G     +  L   +   +KS             A    ++   +K +
Sbjct: 73  ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-------LTEHRTADILTKLRNAEKEL 125

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
                    +             Y +   +    +    ++K  P +   
Sbjct: 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N+     K   + +AI   + A   +EK  +          +A+    V EY  A+    
Sbjct: 178 NRAAALAKLMSFPEAIADCNKA---IEKDPNFV---RAYIRKATAQIAVKEYASALETLD 231

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYK 472
               +D    +    R +     +  +
Sbjct: 232 AARTKDAEVNNGSSAREIDQLYYKASQ 258

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A K+KG    +  +Y DAIK+ +WA+ L E            S  ++CY  VG+ KK V 
Sbjct: 8   ALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-------VFYSNLSACYVSVGDLKKVVE 60

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV-LKIDPSNRIARSTIHR 497
             +K LE       VL++RA   E + K+     DL  + L  D ++      + R
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.2 bits (172), Expect = 6e-13
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           + ++ G+          A + +  A I L         +      A    +  +  +   
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKA-IELFPR------VNSYIYMALIMADRNDSTEYYN 291

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
              K L+ D  N SV   R  +   ++ Y    +D     ++DP N   
Sbjct: 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 15/118 (12%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
                     +  ++ D     S A     K  +     EV +  A    +  ++ KA+ 
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEA---KRKFPEAP---EVPNFFAEILTDKNDFDKALK 393

Query: 443 DCSKVLEQDDTNVSVLVQRALLY---------ESMEKYKLGAEDLRTVLKIDPSNRIA 491
                +E ++    + V  A L           ++E +      L    K+DP +  A
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 6/103 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
              +         +   +   A   L+   + +    V   R      +  Y +A  D  
Sbjct: 275 YMALIMADRNDSTEYYNYFDKA---LKLDSNNS---SVYYHRGQMNFILQNYDQAGKDFD 328

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           K  E D  N+   +Q A L     K+           +  P  
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 11/115 (9%), Positives = 24/115 (20%), Gaps = 15/115 (13%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCY---------KE 433
                         +  A+K    A   +E    +     +    A              
Sbjct: 374 VPNFFAEILTDKNDFDKALKQYDLA---IELENKLD---GIYVGIAPLVGKATLLTRNPT 427

Query: 434 VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           V  + +A     K  + D  +    +  A +    E              +  + 
Sbjct: 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 11/103 (10%), Positives = 25/103 (24%), Gaps = 6/103 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           ++G  N     Y  A K    A    E   +           A       ++       S
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKA---KELDPENI---FPYIQLACLAYRENKFDDCETLFS 362

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           +   +      V    A +      +    +     ++++   
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481
             L  + + +    +Y  A+   +  LE  +  V      +  Y S+   K   E     
Sbjct: 7   LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 482 LKIDPSN 488
           L++ P  
Sbjct: 66  LELKPDY 72

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
             K +G    K G Y +A+         +             S +A    ++GEY +A+ 
Sbjct: 6   KQKEQGNSLFKQGLYREAVHCYDQL---ITAQPQNPV---GYSNKAMALIKLGEYTQAIQ 59

Query: 443 DCSKVLEQDDTNVSVLVQRALLY------ESMEKYKLGAEDLRTVLKIDPSN 488
            C + L    T   V ++  L Y       ++   ++   ++  + +    +
Sbjct: 60  MCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 69.7 bits (170), Expect = 6e-13
 Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM---------ATMMEVLSTRASCYKEVG 435
           K KG    K G+Y  A+      V  LE    +         + ++      A CY ++ 
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331

Query: 436 EYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495
           EY KAV  C K L  D  N   L +R      M +++    D   VL+++P N+ AR  I
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391

Query: 496 HRLTK 500
               K
Sbjct: 392 SMCQK 396

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 10/127 (7%)

Query: 362 DGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMM 421
           DGGT   L GL               G +  +AG++ DA K      +L           
Sbjct: 3   DGGTLAMLRGLSEDTL----EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR----- 53

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481
                  +C + +G Y++A+   S     D          A  +  +           + 
Sbjct: 54  -YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112

Query: 482 LKIDPSN 488
             +  + 
Sbjct: 113 RALAAAQ 119

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
           K +  D  KA  Y +AIK+ S A   +E +   A        R+  Y     Y  A+ D 
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQA---IELNPSNAI---YYGNRSLAYLRTECYGYALGDA 63

Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
           ++ +E D   +    +RA    ++ K++    D  TV+K+ P ++ A+       K+V
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 10/132 (7%)

Query: 361 DDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATM 420
           + G T  ++  +P            +   D    G+  +A  +  +  I    + D    
Sbjct: 20  NSGATLKDINAIPDDMM----DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY--- 72

Query: 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRT 480
              +   A+ Y+   ++++A    +        + + +         ++      E    
Sbjct: 73  ---IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 481 VLKIDPSNRIAR 492
           V++     ++  
Sbjct: 130 VIQHSNDEKLKI 141

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
             KN+G     A  + +AIK+  +A   +E   +        S  ++CY   G+ +K + 
Sbjct: 27  QLKNRGNHFFTAKNFNEAIKYYQYA---IELDPNEP---VFYSNISACYISTGDLEKVIE 80

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV-LKIDPSNRIARSTIHRLTK 500
             +K LE    +   L++RA   ES+  +     DL  + L  D         + R   
Sbjct: 81  FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLN 139

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 7/109 (6%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A    G+ +       DA   L  ++ L                 A    +    ++   
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-------NSYIFLALTLADKENSQEFFK 297

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
              K ++ +         R  +Y  ++ YK   ED +    ++P N   
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 6/103 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
              +         +  K+   A   ++ + +          R   Y  + +YK A  D  
Sbjct: 281 FLALTLADKENSQEFFKFFQKA---VDLNPEYP---PTYYHRGQMYFILQDYKNAKEDFQ 334

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           K    +  NV   +Q A L     K+              P+ 
Sbjct: 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 2/94 (2%)

Query: 395 GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454
           G + +    ++    L             L  R + +     + +A+      +E D   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYA--VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE 58

Query: 455 VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
                  +  Y S    +   E     L+I P +
Sbjct: 59  PVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 18/117 (15%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAV--------------ILLEKSGDMATMMEVLSTRASCY 431
                    G +  AIK    A                L+ K    AT++   S++    
Sbjct: 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK----ATILARQSSQDPTQ 438

Query: 432 KEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
            +  ++  A+   +K  E D  +    +  A L   MEK     E       +  + 
Sbjct: 439 LDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 22/126 (17%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
                  K G++ ++  + +       K   +    EV +  A    + G++  A+    
Sbjct: 349 QLACLLYKQGKFTESEAFFNET---KLKFPTLP---EVPTFFAEILTDRGDFDTAIKQYD 402

Query: 446 KVLEQDDTNVSVLVQRALLYE----------------SMEKYKLGAEDLRTVLKIDPSNR 489
                ++    + V    L                    EK+    + L    ++DP + 
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462

Query: 490 IARSTI 495
            A+  +
Sbjct: 463 QAKIGL 468

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 10/106 (9%), Positives = 30/106 (28%), Gaps = 6/106 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           ++G        Y +A +    A      + +           A    + G++ ++ A  +
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKA---QSLNPENV---YPYIQLACLLYKQGKFTESEAFFN 368

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           +   +  T   V    A +      +    +      +++      
Sbjct: 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD 451
             +  Y  A   LS A+  L  + D   ++          K    Y   ++  +      
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVA----NDLLTKSTDMYHSLLSANTVDDPLR 239

Query: 452 DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           +     L    + +            L+  + + P+ 
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 19/133 (14%), Positives = 34/133 (25%), Gaps = 13/133 (9%)

Query: 355 DFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS 414
             G G   GGT   L  +             +   +  ++G Y DA        +L    
Sbjct: 2   PLGSG---GGTIAMLNEISSDTL----EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD 54

Query: 415 GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLG 474
                         +C + +G+Y  A+   S     D          A       +    
Sbjct: 55  SR------FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108

Query: 475 AEDLRTVLKIDPS 487
              L    ++  +
Sbjct: 109 ESGLFLAQELIAN 121

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMM---EVLSTRASCYKEVGEYKKAVA 442
             GV   + G++  A KW   A+  ++  G+  T+     +L+      +++ +Y +A+ 
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
              + L     N S       ++  M  ++   +   T L +   +  +
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N G   +K  +YA+A+ +   A   L      A      S     +  +G ++ AV    
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQA---LVLIPQNA---STYSAIGYIHSLMGNFENAVDYFH 294

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYK 472
             L     +   +       E      
Sbjct: 295 TALGLRRDDTFSVTMLGHCIEMYIGDS 321

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%)

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481
           +V+ + A  +    ++K      S V+E+D  + S L         + K          +
Sbjct: 23  DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82

Query: 482 LKIDPSNRIA 491
           + + PSN ++
Sbjct: 83  VDLYPSNPVS 92

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 30/170 (17%), Positives = 69/170 (40%), Gaps = 13/170 (7%)

Query: 346 SEVDDWG-YSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQ--KAGQYADAI- 401
            E DDWG +   G G        + +        +   +   K + N   K+  +  AI 
Sbjct: 185 KEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIK 244

Query: 402 KW------LSWAVILLEKSGD---MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD 452
           K+      +  +    E +         +  +    +C  ++ +++ AV  C + LE D 
Sbjct: 245 KYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304

Query: 453 TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
           +N   L +RA  ++ +++Y     DL+   +I P ++  ++ + ++ + +
Sbjct: 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.6 bits (147), Expect = 6e-10
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMA-TMMEVLSTRASCYKEVGEYKKAVADC 444
             GV          AI     A++L++K+           +     Y+++  Y  A+   
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539

Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           ++ L     + +V    AL+Y   +   L    L   L I P+  +A
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 6/106 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
              ++           +    ++  LEKS D      +L  +A        +   +A  +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSD------LLLCKADTLFVRSRFIDVLAITT 329

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           K+LE D  N+ V            +          ++   P   + 
Sbjct: 330 KILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 11/110 (10%), Positives = 30/110 (27%), Gaps = 13/110 (11%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
             G+ + + G    A ++L  +               +L+          + + A+    
Sbjct: 446 FLGMQHMQLGNILLANEYLQSS---YALFQYDP---LLLNELGVVAFNKSDMQTAINHFQ 499

Query: 446 KVLE-------QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
             L         +    +        Y  ++ Y    + L   L +  ++
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 11/103 (10%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
             G+      + ++A ++ S +  +  + G            A  +   GE+ +A++  +
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFG------PAWIGFAHSFAIEGEHDQAISAYT 431

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
                        +   + +  +    L  E L++   +   +
Sbjct: 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 14/138 (10%), Positives = 35/138 (25%), Gaps = 31/138 (22%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVIL------------------------------- 410
           +    +G        +  A +    A+++                               
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260

Query: 411 LEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK 470
              S + A  +  L           +  +   D    +   + +  +L+ +A       +
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320

Query: 471 YKLGAEDLRTVLKIDPSN 488
           +         +L+IDP N
Sbjct: 321 FIDVLAITTKILEIDPYN 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
                   + +  +   +  + + A   ++++  +A   E  S   + YKE G+ ++A+ 
Sbjct: 35  VLLLLSSIHFQCRRLDRSAHFSTLA---IKQNPLLA---EAYSNLGNVYKERGQLQEAIE 88

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
                L      +   +  A    +    +   +   + L+ +P  
Sbjct: 89  HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N     ++ G  A+A    + A   L      A   + L+  A+  +E G  ++AV    
Sbjct: 276 NLANALKEKGSVAEAEDCYNTA---LRLCPTHA---DSLNNLANIKREQGNIEEAVRLYR 329

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
           K LE      +     A + +   K +      +  ++I P+   A S
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N G   ++ GQ  +AI+    A   L    D     +     A+     G+ + AV    
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHA---LRLKPDFI---DGYINLAAALVAAGDMEGAVQAYV 125

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
             L+ +     V      L +++ + +         ++  P+  +A
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 6/106 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
                  +AG +  A +          +  D      VL   +S + +     ++    +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQL---WRQEPDNT---GVLLLLSSIHFQCRRLDRSAHFST 57

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
             ++Q+            +Y+   + +   E  R  L++ P     
Sbjct: 58  LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 6/108 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N      + G    AI     A   +E         +     A+  KE G   +A    +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRA---IELQPHFP---DAYCNLANALKEKGSVAEAEDCYN 295

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
             L    T+   L   A +       +      R  L++ P    A S
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N       AG    A++    A   L+ + D+     V S   +  K +G  ++A A   
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSA---LQYNPDLY---CVRSDLGNLLKALGRLEEAKACYL 159

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           K +E              ++ +  +  L        + +DP+   A
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 6/103 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N G   ++A  +  A+     A   L  S + A    V    A  Y E G    A+    
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRA---LSLSPNHA---VVHGNLACVYYEQGLIDLAIDTYR 261

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           + +E            A   +         +   T L++ P++
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 6/103 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           + G   +  G+  +A      A   +E   + A      S     +   GE   A+    
Sbjct: 140 DLGNLLKALGRLEEAKACYLKA---IETQPNFA---VAWSNLGCVFNAQGEIWLAIHHFE 193

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           K +  D   +   +    + +    +          L + P++
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 8/124 (6%)

Query: 369 LEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRA 428
           LE LPP        A    G      G+   ++  +     +  +       +  L  ++
Sbjct: 41  LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100

Query: 429 SCYKEVGEYKKAVADCSKVLE--------QDDTNVSVLVQRALLYESMEKYKLGAEDLRT 480
                 G  + A     K  +        Q   +  ++  RA L  +  +        R+
Sbjct: 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160

Query: 481 VLKI 484
            +++
Sbjct: 161 GIEV 164

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 10/109 (9%), Positives = 29/109 (26%), Gaps = 6/109 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A  + G   Q        +  L  A      +         +++     + +   ++ + 
Sbjct: 312 AIASNGGGKQALETVQRLLPVLCQA---HGLTPQQV---VAIASHDGGKQALETVQRLLP 365

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
              +        V  +       +++E  +     L     + P   +A
Sbjct: 366 VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 9/110 (8%), Positives = 27/110 (24%), Gaps = 6/110 (5%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
            A  + G   Q        +  L  A  L      +      +++     + +   ++ +
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGL--TPEQV----VAIASHDGGKQALETVQRLL 432

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
               +        V  +        ++E            L    ++ + 
Sbjct: 433 PVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 10/109 (9%), Positives = 30/109 (27%), Gaps = 6/109 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A  + G   Q        +  L  A      +         +++ +   + +   ++ + 
Sbjct: 244 AIASNGGGKQALETVQRLLPVLCQA---HGLTPQQV---VAIASNSGGKQALETVQRLLP 297

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
              +        V  +       +++E  +     L     + P   +A
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 10/109 (9%), Positives = 30/109 (27%), Gaps = 6/109 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A  + G   Q        +  L  A      +         +++     + +   ++ + 
Sbjct: 210 AIASNGGGKQALETVQRLLPVLCQA---HGLTPQQV---VAIASNGGGKQALETVQRLLP 263

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
              +        V  +   +   +++E  +     L     + P   +A
Sbjct: 264 VLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 8/106 (7%), Positives = 26/106 (24%), Gaps = 6/106 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A  +     Q        +  L  A      + +       +++     + +   +  + 
Sbjct: 108 AIASHDGGKQALETVQRLLPVLCQA---HGLTPEQV---VAIASHDGGKQALETVQALLP 161

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
              +        V  +       +++E  +     L     + P  
Sbjct: 162 VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 10/109 (9%), Positives = 29/109 (26%), Gaps = 6/109 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A  + G   Q        +  L  A      +         +++     + +   ++ + 
Sbjct: 176 AIASNGGGKQALETVQRLLPVLCQA---HGLTPQQV---VAIASNGGGKQALETVQRLLP 229

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
              +        V  +       +++E  +     L     + P   +A
Sbjct: 230 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 8/116 (6%), Positives = 32/116 (27%), Gaps = 8/116 (6%)

Query: 376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG 435
              +   A +      +    + +A+         L  + +       +++     + + 
Sbjct: 35  TGQLLKIAKRGGVTAVEAVHAWRNALTGAP-----LNLTPEQV---VAIASHDGGKQALE 86

Query: 436 EYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
             ++ +    +        V  +       +++E  +     L     + P   +A
Sbjct: 87  TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 142

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
             G    K GQ + AI+    A   +++        ++     S +   G +  A+    
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAA---VDRDTTRL---DMYGQIGSYFYNKGNFPLAIQYME 132

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           K +    T+  V  +    Y   ++Y         VL++ P+ 
Sbjct: 133 KQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 9/106 (8%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
                  K   YA+AI+  +       K  +      + + RA CY E+ +Y  A  D  
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKL---EAKKYNSP---YIYNRRAVCYYELAKYDLAQKDIE 61

Query: 446 ---KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
                +       +       +     +  L  +  +  +  D + 
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 9/107 (8%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
              G      G +  AI+++      +  +       +V       Y    EY KA +  
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQ---IRPTTTDP---KVFYELGQAYYYNKEYVKADSSF 165

Query: 445 SKVLEQDDTNVSVLVQRALLYESM---EKYKLGAEDLRTVLKIDPSN 488
            KVLE         + RA    +     K  L       ++++    
Sbjct: 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 17/117 (14%), Positives = 29/117 (24%), Gaps = 17/117 (14%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCY---KEVGEYKKAVA 442
             G       +Y  A          LE   ++         RA          +   A  
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKV---LELKPNIY---IGYLWRARANAAQDPDTKQGLAKP 200

Query: 443 DCSKVLEQDDTN--------VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
              K++E             +      A  Y             + +L +DP+N+ A
Sbjct: 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRT- 480
           +V    A    +   Y +A+   +K+  +   +  +  +RA+ Y  + KY L  +D+ T 
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 481 --VLKIDPSNRIA 491
              +    +    
Sbjct: 64  FSKVNATKAKSAD 76

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 9/123 (7%), Positives = 28/123 (22%), Gaps = 7/123 (5%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
            A           G        +      L          E ++           + +A 
Sbjct: 24  VAWLMLADAELGMGDTTAGEMAVQRG---LALHPGHP---EAVARLGRVRWTQQRHAEAA 77

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST-IHRLTK 500
               +  +    +  + +      E   + +  A       ++ P      +  ++   +
Sbjct: 78  VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137

Query: 501 MVD 503
           + D
Sbjct: 138 LCD 140

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 11/114 (9%), Positives = 34/114 (29%), Gaps = 7/114 (6%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A    G       ++A+A   L  A    + + +      +        ++ G+ + A A
Sbjct: 59  AVARLGRVRWTQQRHAEAAVLLQQA---SDAAPEHP---GIALWLGHALEDAGQAEAAAA 112

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496
             ++  +       +  Q       +  ++   + L   ++   +  +      
Sbjct: 113 AYTRAHQLLPEEPYITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQGVGAVEPF 165

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 26/137 (18%)

Query: 369 LEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRA 428
              +  P +        N G          +A K  + +   + +   +A        R 
Sbjct: 29  FSAVQDPHS----RICFNIGCMYTILKNMTEAEKAFTRS---INRDKHLA---VAYFQRG 78

Query: 429 SCYKEVGEYKKAVADCSKVLEQDDTNVS----------------VLVQRALLYESMEKYK 472
             Y +  +Y  A+ D  + L Q   N                  VL   A +Y   E++K
Sbjct: 79  MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 138

Query: 473 LGAEDLRTVLKIDPSNR 489
              E L     +    R
Sbjct: 139 KAEEQLALATSMKSEPR 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 9/103 (8%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N+GV       +  A+   S            +    +       Y  +    +A    +
Sbjct: 11  NEGVLAADKKDWKGALDAFSAV------QDPHS---RICFNIGCMYTILKNMTEAEKAFT 61

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           + + +D        QR +LY   EKY L  +DL+  L     N
Sbjct: 62  RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMA----------TMMEVLSTRASCYKEVG 435
            +G+   +  +Y  AIK L  A+I L  +  +              EVL   A  Y +  
Sbjct: 76  QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135

Query: 436 EYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKL 473
           E+KKA    +             + +A+  E + K KL
Sbjct: 136 EWKKAEEQLALATSMKSEPRHSKIDKAM--ECVWKQKL 171

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 395 GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454
           G  A A+ +   A+    +  D+A   E      S ++ +GEY+KA A  +  ++Q   +
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLA---ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60

Query: 455 VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
            ++ V  A++  ++ +Y+ G E L  ++     +
Sbjct: 61  QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 8/110 (7%), Positives = 29/110 (26%), Gaps = 6/110 (5%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
            A  +     Q        +       +L +  G     +  +++     + +   ++ +
Sbjct: 600 VAIASNIGGKQALETVQRLLP------VLCQAHGLTPAQVVAIASHDGGKQALETVQRLL 653

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
               +        V  +       +++E  +     L     +     +A
Sbjct: 654 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A  N     Q+ G+  +A+     A   +  S   A   +  S   +  KE+ + + A+ 
Sbjct: 45  AHSNLASVLQQQGKLQEALMHYKEA---IRISPTFA---DAYSNMGNTLKEMQDVQGALQ 98

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST-IHRLTKM 501
             ++ ++ +          A +++            RT LK+ P    A     H L  +
Sbjct: 99  CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
            +GV     G  A A    S A+ +  +  DM    EV +       + G +  A     
Sbjct: 48  ERGVLYDSLGLRALARNDFSQALAI--RP-DMP---EVFNYLGIYLTQAGNFDAAYEAFD 101

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
            VLE D T     + R +      + KL  +DL    + DP++
Sbjct: 102 SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 2/100 (2%)

Query: 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD 451
           Q   Q    +  +     L  ++       ++L  R   Y  +G    A  D S+ L   
Sbjct: 16  QPTLQQEVILARMEQI--LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73

Query: 452 DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
                V     +       +    E   +VL++DP+   A
Sbjct: 74  PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
            +GV    AG Y ++I     A   ++   + +   +    +      +  Y++AV   +
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKA---IQLDPEES---KYWLMKGKALYNLERYEEAVDCYN 64

Query: 446 KVLE--QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
            V+   +D+ N  V   +A     +E  ++ AE      K++  +
Sbjct: 65  YVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 6/104 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
               +G+   K    A+A           +K  +     E   +      E  +   A+ 
Sbjct: 19  NPMEEGLSMLKLANLAEAALAFEAVC---QKEPERE---EAWRSLGLTQAENEKDGLAII 72

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486
             +     D  +++V    A+ + +          LR  L   P
Sbjct: 73  ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 9/67 (13%), Positives = 17/67 (25%)

Query: 426 TRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485
                  ++    +A      V +++           L     EK  L    L     +D
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 486 PSNRIAR 492
           P +    
Sbjct: 82  PKDIAVH 88

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
             A  +G+   K G     I ++  A+    +    A   E          E    + A+
Sbjct: 66  PGAFEEGLKRLKEGDLPVTILFMEAAI---LQDPGDA---EAWQFLGITQAENENEQAAI 119

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486
               + LE    N+  L+  A+ Y +    +   E L+  +K +P
Sbjct: 120 VALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 4/103 (3%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N G    +  +Y +A + L  A        + +    V         ++ +  +A     
Sbjct: 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYP-ERS---RVFENLGLVSLQMKKPAQAKEYFE 165

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           K L  +    SV ++ A L     +Y    +      +    N
Sbjct: 166 KSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
             G    K  Q   A+ +L  A   +E + +     E       C    G   +A++  +
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRA---VELNENDT---EARFQFGMCLANEGMLDEALSQFA 183

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
            V EQD  +        + Y   E  +   E L   + I P + +A
Sbjct: 184 AVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N         +   A+ +   A   LE     A          + Y     YK+A     
Sbjct: 62  NFANLLSSVNELERALAFYDKA---LELDSSAA---TAYYGAGNVYVVKEMYKEAKDMFE 115

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
           K L     N  +      +   +E+ KL    L+  ++++ ++  A
Sbjct: 116 KALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 6/104 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
               +G+   K    A+A            +        E   +      E  +   A+ 
Sbjct: 23  NPMEEGLSMLKLANLAEAALAFEAVCQAAPER------EEAWRSLGLTQAENEKDGLAII 76

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486
             +     D  +++V    A+ + +          LR  L   P
Sbjct: 77  ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 9/110 (8%)

Query: 386 NKGVDNQKAGQYADAI----KWLS-----WAVILLEKSGDMATMMEVLSTRASCYKEVGE 436
              V +        A+     WL        +  +    D+      + +    +    E
Sbjct: 94  ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153

Query: 437 YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486
           Y++        LE +  +  +     +LY     Y   A +LR  +++ P
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
                +G+   + G   +A+     AV    K       ME      +   E  +   A+
Sbjct: 65  PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH------MEAWQYLGTTQAENEQELLAI 118

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486
           +   + LE    N + L+  A+ + +    +   E LR  L+  P
Sbjct: 119 SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 25/120 (20%)

Query: 391 NQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ 450
            ++  +  +  K +  A   LEK+  +    +VL + A  Y+   E  KA+    K LE 
Sbjct: 223 REEGEEEGEGEKLVEEA---LEKAPGVT---DVLRSAAKFYRRKDEPDKAIELLKKALEY 276

Query: 451 DDTNVSVLVQRALLYESM-------------------EKYKLGAEDLRTVLKIDPSNRIA 491
              N  +  Q    Y +                    E        L+   + + +    
Sbjct: 277 IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS 456
              A+  L  A    E + ++     V S  AS +    +Y++A     K   ++ T V+
Sbjct: 316 IGHAVAHLKKA---DEANDNLF---RVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

Query: 457 VLVQRALLYESMEKYKLGAED-----LRTVLKIDPSNRIARSTIHRLTKMVD 503
                 L Y + + Y++  ED         +KI+  +R       +L K+  
Sbjct: 370 -KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 7/113 (6%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATM--MEVLSTRASCYKEVG--EYKKAV 441
           N        G+ +D   ++     + EK      +   E+         + G  + ++A 
Sbjct: 99  NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAE---DLRTVLKIDPSNRIA 491
               K LE+   N       A+    ++ +         LR  ++++P N+  
Sbjct: 159 VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 13/64 (20%), Positives = 22/64 (34%)

Query: 428 ASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487
               +E  E  +      + LE+      VL   A  Y   ++     E L+  L+  P+
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279

Query: 488 NRIA 491
           N   
Sbjct: 280 NAYL 283

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 8/95 (8%), Positives = 23/95 (24%), Gaps = 4/95 (4%)

Query: 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD 451
            +  + A+++ +   A+                  +  C  + G++  A A   + L   
Sbjct: 88  GRLNRPAESMAYFDKALADPTYP-TPY---IANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143

Query: 452 DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486
                   + A       +        +       
Sbjct: 144 PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 10/62 (16%), Positives = 24/62 (38%)

Query: 427 RASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486
           R    + + +  + +   + +L QD  N      R  + +  + +    + +  +LK D 
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231

Query: 487 SN 488
            N
Sbjct: 232 RN 233

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 6/112 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
             G+   +  +Y  A+  L                  V          +G + +A+    
Sbjct: 81  VLGLTYVQVQKYDLAVPLLIKVAEA--NP-INF---NVRFRLGVALDNLGRFDEAIDSFK 134

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497
             L        V    A  YE M +++      +   ++D    +  + + R
Sbjct: 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
              ++KG+ + KAG+Y+ A+  L       +         +V       Y + G   +  
Sbjct: 9   VYYRDKGISHAKAGRYSQAVMLLEQV---YDADAFDV---DVALHLGIAYVKTGAVDRGT 62

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
               + L     NV V     L Y  ++KY L    L  V + +P N
Sbjct: 63  ELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 4/106 (3%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           +A  + V +   G                  S   ++M   L+         G+ +  VA
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 443 DCSKVLE---QDDTNVS-VLVQRALLYESMEKYKLGAEDLRTVLKI 484
                ++   +D   +S +  Q    Y  +  Y    +  +  L +
Sbjct: 70  FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 11/115 (9%), Positives = 31/115 (26%), Gaps = 9/115 (7%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
              ++              ++ L      +  +   +   E  +     Y    +Y  ++
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDK---IRANPQNS---EQWALLGEYYLWQNDYSNSL 64

Query: 442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAE---DLRTVLKIDPSNRIARS 493
               + L+    N  +    A +        + A+    +   L +D +   A  
Sbjct: 65  LAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ- 450
            K   Y   I  L   +       D+   + + +  A+ Y E G  KK +    ++L+Q 
Sbjct: 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185

Query: 451 ------DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484
                 ++ +V V    A       +Y+     +   ++I
Sbjct: 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
               +      Y  A+  L  A+ L     +   +   L   A+ Y   G+ + AV    
Sbjct: 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246

Query: 446 KVLE-----QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484
           K  +       D    VL   +       + +   + +   L  
Sbjct: 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 7/107 (6%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
             +G+      +Y  AIK+   A   L    D     E     +  Y  + +   ++   
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166

Query: 445 SKVL----EQDDTNVSV---LVQRALLYESMEKYKLGAEDLRTVLKI 484
            +      E +  N+ +       A  +  +++Y+      +    +
Sbjct: 167 RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
               +     QY DAI     A  + E       M   L     C     +Y+ A+    
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248

Query: 446 KVLE-QDDTNVSVLVQRALLYESMEKYKLG 474
           + +   +++N+   + +A    +   YKLG
Sbjct: 249 RAIAVFEESNILPSLPQAYFLITQIHYKLG 278

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 6/110 (5%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441
           A A ++     +    + A+     A  + E    +    E++   +       ++ +A 
Sbjct: 116 AMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175

Query: 442 ADCSKVLE------QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485
           A   K            T     + + L+      Y    + +R    I 
Sbjct: 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 18/113 (15%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAV-ILLEKSG----DMATMMEVLSTRASCYKEVGEYKKA 440
           +    +        A+     A+  L + SG    D+ATM+ +L   A  Y++  +YK+A
Sbjct: 6   HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNIL---ALVYRDQNKYKEA 62

Query: 441 V-------ADCSKVLEQDDTNV-SVLVQRALLYESMEKYKLGAEDL-RTVLKI 484
                   A   K L +D   V + L   A+LY    KYK  AE L +  L+I
Sbjct: 63  AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK-EAEPLCKRALEI 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	503
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.79
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.77
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.76
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.67
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.67
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.66
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.65
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.63
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.62
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.62
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.61
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.6
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.58
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.58
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.55
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.55
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.54
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.54
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.51
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.5
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.49
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.48
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.48
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.48
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.48
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.46
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.44
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.43
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.43
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.41
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.41
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.4
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.39
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.38
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.37
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.37
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.37
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.37
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.36
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.36
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.35
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.35
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.35
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.35
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.34
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.34
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.34
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.34
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.33
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.33
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.33
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.32
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.32
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.32
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.31
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.31
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.3
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.29
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.29
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.29
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.28
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.26
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.25
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.24
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.23
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.23
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.23
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.22
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.22
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.22
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.22
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.21
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.21
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.21
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.2
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.2
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.2
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.2
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.19
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.19
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.17
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.16
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.14
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.14
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.12
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.11
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.07
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.03
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.03
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.01
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.99
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.99
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.98
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.97
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.96
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.96
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.95
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.95
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.95
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.95
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.94
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.93
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.92
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.91
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.89
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.89
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.89
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.88
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.86
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.85
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.83
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.83
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.81
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.81
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.79
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.78
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.73
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.69
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.69
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.66
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.62
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.62
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.6
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.58
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.57
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.48
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.47
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.47
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.43
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.41
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.3
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.25
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.15
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.11
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.07
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.07
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.05
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.99
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.99
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.96
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.92
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.73
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.57
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.27
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.15
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.07
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.96
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.9
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.87
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.86
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.8
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.71
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.63
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.58
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.41
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.22
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.15
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.92
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.43
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.38
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.36
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.68
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.55
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.49
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.21
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.04
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.93
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.48
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.55
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.25
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.15
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.71
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.64
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	89.94
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	89.06
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	88.18
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.66
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	87.21
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	86.33
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	85.05
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	84.78
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	81.59
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	80.71
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	80.07

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=4.3e-20  Score=158.89  Aligned_cols=115  Identities=24%  Similarity=0.388  Sum_probs=110.7

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+..++++|+.++++|+|++|+++|++||++      +|.+..+|.++|.||+++|++++|+++|+++|+++|++.++|
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            46889999999999999999999999999999      667789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      +++|.+|..+|++++|+++|+++|+++|++.+++..|.+|.
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.79  E-value=1.2e-18  Score=152.33  Aligned_cols=124  Identities=22%  Similarity=0.270  Sum_probs=112.6

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD------------MATMMEVLSTRASCYKEVGEYKKAVADCSK  446 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d------------dpd~A~aysNrAlcylrLGdyeeALedaek  446 (503)
                      ..+..++.+|+.+++.++|++|+++|++||++++....            ++....+|.++|.||+++++|++|+.+|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            46889999999999999999999999999998654211            456778999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHhhh
Q 010717          447 VLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR-IARSTIHRLTKMV  502 (503)
Q Consensus       447 ALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~-eAk~~La~LqklL  502 (503)
                      +|+++|.++++|+++|.+|..+|+|++|+++|+++++++|++. .+...|..+++.+
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 7788888876654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=8.2e-18  Score=140.38  Aligned_cols=117  Identities=19%  Similarity=0.251  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|..+++.++|++|+++|++++++      +|....+|.++|.||++++++++|+++|+++++++|++..+++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI   76 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            5778999999999999999999999999998      5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHhhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKID------PSNRIARSTIHRLTKMV  502 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLD------Pen~eAk~~La~LqklL  502 (503)
                      ++|.+|..+|++++|+++|+++++++      |.+.++...+.++++.+
T Consensus        77 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           77 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999      99999999999998765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.76  E-value=1.2e-17  Score=143.27  Aligned_cols=114  Identities=16%  Similarity=0.193  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .+.+++++|++++++|+|++|+++|++||++      +|....+|.++|.||+++|+|++|+++|+++|+++|++     
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   80 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK   80 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence            5778999999999999999999999999999      66778999999999999999999999999999998765     


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          455 --VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       455 --~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                        .++++++|.+|..++++++|+++|+++|+++|+ +++...|.++++
T Consensus        81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~leK  127 (127)
T 4gcn_A           81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELEK  127 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhCC
Confidence              468999999999999999999999999999884 666777777653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.75  E-value=3.4e-18  Score=158.30  Aligned_cols=123  Identities=12%  Similarity=0.119  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ---  450 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d------dpd~A~aysNrAlcylrLGdyeeALedaekALkL---  450 (503)
                      .+..++.+|+.+++.|+|++|++.|++||++.|..+.      .+.++.+|+|+|.|+.++|+|++|+.+|++||++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            5778999999999999999999999999999776321      2335669999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          451 ----DDTNVSVL----VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       451 ----dPd~~kAl----yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                          +|++.++|    |++|.+|..++++++|+++|+++++++|++..+...+.++++++
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                99999999    99999999999999999999999999999877666666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.73  E-value=5.7e-17  Score=141.86  Aligned_cols=118  Identities=18%  Similarity=0.185  Sum_probs=108.4

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA  457 (503)
                      ...+..++.+|.++++.++|++|+++|++++++      +|....+|.++|.||+++++|++|+++|+++++++|++..+
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   81 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI------APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            347889999999999999999999999999999      56678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHhh
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI--ARSTIHRLTKM  501 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e--Ak~~La~Lqkl  501 (503)
                      ++++|.+|+.++++++|+++|+++++++|++..  +...+..+++.
T Consensus        82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  127 (164)
T 3sz7_A           82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK  127 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999866  56666665544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.70  E-value=2.9e-16  Score=141.07  Aligned_cols=104  Identities=9%  Similarity=0.070  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|..+++.|+|++|+++|++++++      +|.+..+|.++|.||.++|+|++|++.|+++++++|+++.+++
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            6889999999999999999999999999999      6778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      ++|.+|..+|++++|+++|+++++++|+..
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.70  E-value=2.5e-16  Score=138.35  Aligned_cols=116  Identities=14%  Similarity=0.023  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....++.+|.+|++.++|++|+++|+++|++      +|.+..+|.++|.||.++|++++|+.+|+++++++|+++.+++
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINV------QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence            5667889999999999999999999999999      6778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAED-LRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~-LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++|.+|..++++++|++. ++++++++|+++++...+.++...
T Consensus       104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            999999999999988776 589999999999998888887654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=2.6e-16  Score=135.53  Aligned_cols=116  Identities=15%  Similarity=0.104  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....++.+|..+++.++|++|+++|++++++      +|.+..+|.++|.||.++|++++|+++|+++++++|+++.+++
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   90 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF   90 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence            5778999999999999999999999999998      6677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+|.+|..+|++++|+++|+++++++|++++....+.+++.+
T Consensus        91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999887666555555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=4.9e-16  Score=136.76  Aligned_cols=116  Identities=14%  Similarity=0.059  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....++.+|..++..|+|++|++.|++++++      +|.+..+|.++|.||.++|++++|+++|+++++++|+++.+++
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            5788999999999999999999999999998      6677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++|.+|..+|++++|+++|+++++++|++++......+++.+
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  135 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM  135 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence            999999999999999999999999999876665555554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.68  E-value=8e-16  Score=128.31  Aligned_cols=116  Identities=20%  Similarity=0.254  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|..++..++|++|+++|++++++      .+....+|.++|.|++.++++++|+.+++++++++|++..+++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   81 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   81 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence            5788999999999999999999999999998      5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPS-----NRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPe-----n~eAk~~La~Lqkl  501 (503)
                      .+|.+|..++++++|++.|+++++++|+     +..+...+.++++.
T Consensus        82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           82 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998     78888888777654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.67  E-value=3.1e-15  Score=119.10  Aligned_cols=115  Identities=20%  Similarity=0.258  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|..++..++|++|+++|++++++      .|....++.++|.|+++++++++|+..++++++++|.+..+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS   76 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence            4678999999999999999999999999998      4566889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .+|.+|..++++++|++.|+++++++|++..+...+.++++
T Consensus        77 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           77 RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999888864

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.67  E-value=1.8e-15  Score=136.26  Aligned_cols=124  Identities=20%  Similarity=0.238  Sum_probs=110.9

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChh----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMAT----------MMEVLSTRASCYKEVGEYKKAVADCSKVL  448 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd----------~A~aysNrAlcylrLGdyeeALedaekAL  448 (503)
                      ..+..++.+|..+++.++|++|+++|++++++.+...+...          ...+|.++|.||++++++++|+.+|++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            46778999999999999999999999999998554332111          14899999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          449 EQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       449 kLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +++|++.++++++|.+|+.++++++|+++|+++++++|++..+...+..+...+
T Consensus       116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988887653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=2.6e-15  Score=125.32  Aligned_cols=119  Identities=21%  Similarity=0.357  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|..++..++|++|+++|++++++.+   +.+....++.+++.||++++++++|+++|+++++++|++..+++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            578899999999999999999999999997722   12223889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+|.+|+.++++++|+++|+++++++|++..+...+.++.+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999888654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.65  E-value=2.8e-15  Score=122.57  Aligned_cols=117  Identities=24%  Similarity=0.365  Sum_probs=109.7

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      .....++.+|..++..++|++|+++|++++++      .+....++.++|.|++.++++++|+++++++++++|.+..++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   87 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY   87 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHH
Confidence            46889999999999999999999999999987      456688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +.+|.+|..++++++|++.|+++++++|.+..+...+..+...
T Consensus        88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988888887654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.64  E-value=2.5e-15  Score=152.50  Aligned_cols=124  Identities=20%  Similarity=0.336  Sum_probs=113.2

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC----------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG----------DMATMMEVLSTRASCYKEVGEYKKAVADCSKVL  448 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~----------ddpd~A~aysNrAlcylrLGdyeeALedaekAL  448 (503)
                      ..+..++.+|+.+++.++|++|+++|++||++.+...          .++....+|.++|.||+++++|++|+++|+++|
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4577899999999999999999999999999655431          356788999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          449 EQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       449 kLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +++|++.++++++|.+|+.+++|++|+++|+++++++|++.++...+..+++.+
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888876643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.64  E-value=1.4e-14  Score=117.01  Aligned_cols=118  Identities=20%  Similarity=0.325  Sum_probs=110.1

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+..+..+|..++..++|++|+++|++++++      .+....++.+++.|+..++++++|++.++++++++|++..++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence            36778999999999999999999999999988      455688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +.+|.+|..++++++|++.|+++++++|++..+...+..+...+
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888876654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.63  E-value=4.9e-15  Score=147.10  Aligned_cols=123  Identities=23%  Similarity=0.330  Sum_probs=110.6

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD---------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d---------dpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      ..+..++.+|..+++.++|++|+++|++|+++.+....         .+....+|.++|.||+++++|++|+++|+++|+
T Consensus       145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999554321         122368999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          450 QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       450 LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++|++.++++++|.+|+.++++++|+++|+++++++|++..+...+..+...
T Consensus       225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888877654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.63  E-value=8.2e-15  Score=120.94  Aligned_cols=116  Identities=21%  Similarity=0.190  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLV  459 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAly  459 (503)
                      .++.+|..++..++|++|++.|+++++..+   +.+....++..+|.|++++|++++|+..|+++++++|++   ..+++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYP---NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            577899999999999999999999998733   234445799999999999999999999999999999999   89999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+|.+|..+|++++|++.|+++++++|++..+...+.++..+
T Consensus        81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999888877777654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.62  E-value=3.4e-15  Score=154.73  Aligned_cols=123  Identities=29%  Similarity=0.375  Sum_probs=107.0

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD---------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d---------dpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      ..+..++.+|+.++++++|.+|+++|++||++.+....         .+....+|+++|.||+++++|++|+.+|+++|+
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            36778999999999999999999999999999664321         123378999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          450 QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       450 LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++|++.++||++|.+|+.+++|++|+.+|+++++++|++..+...+..+...
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888888877654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.62  E-value=1.3e-14  Score=133.13  Aligned_cols=114  Identities=19%  Similarity=0.158  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLST----------------RASCYKEVGEYKKAVAD  443 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysN----------------rAlcylrLGdyeeALed  443 (503)
                      .++.+..+|..++..|+|++|+++|++++++      +|....+|+.                +|.||.++|++++|++.
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3667889999999999999999999999999      6677888888                99999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       444 aekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      |+++++++|++..+++.+|.+|..+|++++|+++|+++++++|++..+...+..+.
T Consensus        77 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           77 YKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888777653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.62  E-value=2.4e-14  Score=121.65  Aligned_cols=114  Identities=24%  Similarity=0.320  Sum_probs=106.0

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+..+..+|..++..++|++|+++|++++++      .+....++.++|.|++.++++++|+++++++++++|.+..++
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   84 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   84 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            36778999999999999999999999999998      556688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +.+|.+|..++++++|+++|+++++++|.+..+...+..+
T Consensus        85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           85 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999998877555554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.61  E-value=1.6e-14  Score=117.00  Aligned_cols=116  Identities=23%  Similarity=0.248  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .+..++.+|..++..++|++|+++|++++++      .+....++.++|.|+++++++++|+.++++++.+.|.+     
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            5678899999999999999999999999998      45567899999999999999999999999999998877     


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          455 --VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       455 --~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                        ..+++.+|.+|..++++++|+++|++++++.| +..+...+.++.+.+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence              89999999999999999999999999999999 688888887776653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.61  E-value=5.8e-14  Score=112.41  Aligned_cols=117  Identities=24%  Similarity=0.310  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+..+|..++..+++++|+++|++++++      .+....++.+++.++.+.+++++|+..++++++++|.+..+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   81 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY   81 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH
Confidence            4678899999999999999999999999988      4556789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      .++.+|..++++++|++.|+++++++|.+..+...+..+....
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999888876543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.60  E-value=6.6e-15  Score=125.33  Aligned_cols=102  Identities=14%  Similarity=0.038  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      .++.+|..+++.|++++|++.|++++++      +|....+|.++|.|+.++|++++|+..|+++++++|++..+++.+|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4678999999999999999999999998      6778899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      .+|..+|++++|++.|+++++++|++..
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           93 VSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999998754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.58  E-value=2.2e-14  Score=158.84  Aligned_cols=117  Identities=16%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA  457 (503)
                      ...+.++.++|.++.+.|++++|++.|++||++      +|+++.+|+++|.+|.++|++++|+++|+++|+++|++..+
T Consensus        40 P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a  113 (723)
T 4gyw_A           40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA  113 (723)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            344555566666666666666666666666655      44555666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      |+++|.+|..+|++++|+++|+++|+++|++.++...|..+..
T Consensus       114 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A          114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence            6666666666666666666666666666666666655555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.58  E-value=3.8e-15  Score=130.78  Aligned_cols=108  Identities=17%  Similarity=0.065  Sum_probs=97.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717          387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE  466 (503)
Q Consensus       387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~  466 (503)
                      +|.++..++++++|++.|++++..      +|.....++++|.||+++|+|++|+++|+++|+++|+++.+|+.+|.+|.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   76 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPS------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE   76 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCS------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhccc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            678888899999999999999976      45677889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          467 SMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       467 ~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .++++++|+.+|+++++++|++.++...+..+..
T Consensus        77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999988887754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.56  E-value=8.6e-14  Score=126.63  Aligned_cols=106  Identities=19%  Similarity=0.193  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      +..++.+|.+++..++|++|+++|++++++.+     +.+..++.++|.|+++++++++|+++|+++++++|++..+++.
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   81 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-----NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG   81 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-----TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-----CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence            57899999999999999999999999999832     0445788889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIA  491 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eA  491 (503)
                      +|.+|..++++++|++.|+++++++|++...
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            9999999999999999999999999999854

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.56  E-value=3.7e-14  Score=130.87  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=91.6

Q ss_pred             CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc-----------CCHHHHHHHH
Q 010717          376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV-----------GEYKKAVADC  444 (503)
Q Consensus       376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL-----------GdyeeALeda  444 (503)
                      .....+.++..+|.++++.|++++|++.|++++++      +|....++.++|.++.++           |++++|++.+
T Consensus        34 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~  107 (217)
T 2pl2_A           34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL  107 (217)
T ss_dssp             TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence            35566777777888888888888888888888877      556677788888888888           8888888888


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       445 ekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +++++++|++..+++.+|.+|..+|++++|++.|+++++++ ++.++...+..+..
T Consensus       108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~  162 (217)
T 2pl2_A          108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL  162 (217)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888 77777777766654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.56  E-value=1.7e-13  Score=120.35  Aligned_cols=115  Identities=17%  Similarity=0.203  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ---------  450 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL---------  450 (503)
                      .+..|.++|.+++++|+|++|+++|++||++      +|.+..+|.++|.||.+++++++|++.+++++.+         
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   77 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY   77 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence            4677888899999999999999999999888      4556677777777777777777777766665554         


Q ss_pred             -------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          451 -------------------------DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       451 -------------------------dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                                               +|.+..+++.+|.+|..+|++++|++.|+++++++|.+..+...+..+..
T Consensus        78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A           78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence                                     45555566666777777777777777777777777777766666666544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.55  E-value=6.8e-15  Score=146.48  Aligned_cols=116  Identities=18%  Similarity=0.318  Sum_probs=92.5

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhH-----------------HHHHHHHHHHHHcCCHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMM-----------------EVLSTRASCYKEVGEYKKAV  441 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A-----------------~aysNrAlcylrLGdyeeAL  441 (503)
                      ..+..++.+|+.+++.++|.+|+.+|++|+++.+      ...                 .+|.++|.||+++++|++|+
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p------~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~  250 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG------DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI  250 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC------HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc------cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3677899999999999999999999999999843      323                 48999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          442 ADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       442 edaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .+|+++|+++|++.++|+++|.+|+.+++|++|+++|+++++++|++..+...|..+..
T Consensus       251 ~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          251 GHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888887743

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.55  E-value=6.5e-14  Score=155.13  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=112.2

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..++++.++|.++.++|+|++|+++|++||++      +|+.+.+|.++|.+|.++|++++|+++|+++|+++|++..+|
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~   80 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY   80 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            36889999999999999999999999999999      677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +++|.+|..+|++++|+++|+++++++|++.++...|..+...+
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~  124 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS  124 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999988876543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.54  E-value=1e-13  Score=121.63  Aligned_cols=114  Identities=14%  Similarity=0.109  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASC-YKEVGEY--KKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlc-ylrLGdy--eeALedaekALkLdPd~~k  456 (503)
                      ....+..+|.+++..++|++|+++|++++++.      |....++.+++.+ ++..+++  ++|++.++++++++|.+..
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~  116 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT  116 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHH
Confidence            46789999999999999999999999999994      4457899999999 8899999  9999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      +++.+|.+|..++++++|++.|+++++++|++......+..+.
T Consensus       117 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          117 ALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            9999999999999999999999999999998865555444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.54  E-value=8.7e-14  Score=128.37  Aligned_cols=115  Identities=17%  Similarity=0.086  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKA-----------GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL  448 (503)
Q Consensus       380 ~A~alk~lGn~~fkq-----------GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL  448 (503)
                      ....+..+|.++.+.           |++++|++.|++++++      +|....++.++|.+|..+|++++|++.|++++
T Consensus        72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  145 (217)
T 2pl2_A           72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV------NPRYAPLHLQRGLVYALLGERDKAEASLKQAL  145 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            477889999999999           9999999999999998      66778999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          449 EQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       449 kLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++ +++.+++.+|.+|..+|++++|++.|+++++++|++..+...+..+...
T Consensus       146 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~  197 (217)
T 2pl2_A          146 ALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL  197 (217)
T ss_dssp             HHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred             hcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            999 9999999999999999999999999999999999999998888777543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.51  E-value=5.7e-14  Score=111.06  Aligned_cols=102  Identities=16%  Similarity=0.095  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--NVSVL  458 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~~kAl  458 (503)
                      +..+..+|.+++..+++++|+++|++++++      .+....++.++|.++++++++++|++.++++++++|.  +..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   79 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW   79 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence            446778999999999999999999999998      4556789999999999999999999999999999999  99999


Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 010717          459 VQRALLYESM-EKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       459 yrlA~Ay~~L-GdyeeAle~LqkALkLDPen  488 (503)
                      +.+|.+|..+ +++++|+++|+++++..|.+
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999999999 99999999999999999875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.51  E-value=1.5e-13  Score=125.11  Aligned_cols=122  Identities=11%  Similarity=0.117  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--NVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~~k  456 (503)
                      ....+..+|.+++..++|++|++.|++++++.+.... ....+.+|.++|.++..+|++++|++.|+++++++|+  +..
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  154 (228)
T 4i17_A           75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD  154 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence            3555666666666666666666666666665221100 0011245666666666666666666666666666666  666


Q ss_pred             HHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          457 VLVQRALLYESMEKY---------------------------KLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       457 AlyrlA~Ay~~LGdy---------------------------eeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++.+|.+|+.+++.                           ++|+.+|+++++++|++.++...+.+++.+
T Consensus       155 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~  226 (228)
T 4i17_A          155 ALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM  226 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence            666666666666665                           666666666666666666666666666544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.50  E-value=1.4e-13  Score=132.96  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|..+++.|+|++|+++|++|+++      +|....+|.++|.||++++++++|+++|+++++++|++.++++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4678999999999999999999999999998      5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      ++|.+|..+|++++|++.|+++++++|++
T Consensus        77 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           77 FLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999976

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.50  E-value=7.6e-14  Score=116.25  Aligned_cols=104  Identities=19%  Similarity=0.210  Sum_probs=89.6

Q ss_pred             HhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 010717          393 KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYK  472 (503)
Q Consensus       393 kqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdye  472 (503)
                      ..|++++|+++|++++++.   .++|....++.++|.||+++|+|++|++.++++++++|++..+++.+|.+|..+|+++
T Consensus         2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~   78 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE   78 (117)
T ss_dssp             -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence            4689999999999999761   1136778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          473 LGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       473 eAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      +|++.|++++++.|++..+......+.
T Consensus        79 ~A~~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           79 QGVELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999999988776555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=3e-13  Score=121.90  Aligned_cols=114  Identities=19%  Similarity=0.262  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|.+++..++|++|+++|++++++      .+....++.+++.|++++|++++|+++++++++++|++..+++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  211 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI  211 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHH
Confidence            5778899999999999999999999999998      4556789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKID------PSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLD------Pen~eAk~~La~Lq  499 (503)
                      .+|.+|..+|++++|++.|+++++++      |.+.++...+.++.
T Consensus       212 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          212 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  257 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence            99999999999999999999999999      99999988887764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=3.6e-13  Score=123.50  Aligned_cols=107  Identities=18%  Similarity=0.209  Sum_probs=94.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717          387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE  466 (503)
Q Consensus       387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~  466 (503)
                      +|.++++.|+|++|++.|++++++      +|.+..++.++|.||+.+|++++|+++|+++++++|++..+++.+|.+|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999      66778999999999999999999999999999999999988888777664


Q ss_pred             H-----------------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          467 S-----------------------------------MEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       467 ~-----------------------------------LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .                                   +++|++|+++|+++++++|+. ++...+.++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~~  201 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILR  201 (208)
T ss_dssp             HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence            3                                   457899999999999999974 45566666544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.49  E-value=2.5e-13  Score=139.16  Aligned_cols=116  Identities=17%  Similarity=0.095  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE-YKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd-yeeALedaekALkLdPd~~kAl  458 (503)
                      .+.++..+|.++.+.+++++|++.|++||++      +|....+|++|+.|+.++|+ +++|+++|+++|+++|++..+|
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            5677777888888888888888888888877      56677788888888888886 8888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++|.+|..++++++|+++|+++|+++|++..+...+..+...
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence            8888888888888888888888888888887777766665543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.48  E-value=2.2e-13  Score=139.54  Aligned_cols=116  Identities=10%  Similarity=0.064  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQ-YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGD-Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ...++..+|.++...++ |++|+++|++||++      +|....+|++|+.|+..+|++++|+.+|+++|+++|++..+|
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~  203 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  203 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH
Confidence            57889999999999997 99999999999999      677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++|.+|..+|++++|+++|+++|+++|.+..+...+..+...
T Consensus       204 ~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          204 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888777544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.48  E-value=7.1e-13  Score=118.35  Aligned_cols=113  Identities=18%  Similarity=0.171  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV----  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~----  455 (503)
                      .+..+..+|.+++..++|++|+++|++++++      ++....+|.++|.||+++|++++|+++|++++++.|.+.    
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  109 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY  109 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH
Confidence            4678999999999999999999999999998      566789999999999999999999999999999888766    


Q ss_pred             ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 010717          456 ------------SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN--RIARSTIHRL  498 (503)
Q Consensus       456 ------------kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen--~eAk~~La~L  498 (503)
                                  .+++++|.+|..+|++++|+++|+++++++|++  ..+...+..+
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  166 (213)
T 1hh8_A          110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV  166 (213)
T ss_dssp             GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence                        999999999999999999999999999999965  3444444444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.48  E-value=1.8e-12  Score=104.11  Aligned_cols=112  Identities=23%  Similarity=0.274  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR  461 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl  461 (503)
                      ..+..+|..++..+++++|+++|++++++      .+....++..++.++...+++++|++.+++++++.|....+++.+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   75 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL   75 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            35677888888999999999999998877      344567888889999999999999999999999888888888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       462 A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      +.+|..++++++|++.|++++++.|.+..+...+..+.
T Consensus        76 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  113 (136)
T 2fo7_A           76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY  113 (136)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            99999999999999999999999888877766666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.48  E-value=9.4e-14  Score=128.47  Aligned_cols=104  Identities=11%  Similarity=0.105  Sum_probs=95.8

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHH
Q 010717          392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEY----------KKAVADCSKVLEQDDTNVSVLVQR  461 (503)
Q Consensus       392 fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdy----------eeALedaekALkLdPd~~kAlyrl  461 (503)
                      .+.+.|++|++.|++|+++      +|.++++|.++|.|+++++++          ++|+..|++||+++|++..+||++
T Consensus        13 ~r~~~feeA~~~~~~Ai~l------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~L   86 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            4667899999999999999      778899999999999999875          599999999999999999999999


Q ss_pred             HHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          462 ALLYESME-----------KYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       462 A~Ay~~LG-----------dyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      |.+|..++           ++++|+++|+++|+++|++...++.+..+.+.
T Consensus        87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence            99999885           89999999999999999999999888877654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.48  E-value=1.8e-12  Score=113.70  Aligned_cols=101  Identities=17%  Similarity=0.146  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717          384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL  463 (503)
Q Consensus       384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~  463 (503)
                      +..+|..+...+++++|++.+.+++++      .+....++..+|.+|.++|++++|++.|+++++++|.++.+++++|.
T Consensus        76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  149 (184)
T 3vtx_A           76 YYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL  149 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence            333344444444444444444444443      45667889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          464 LYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       464 Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      +|..+|++++|+++|+++|+++|++..
T Consensus       150 ~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          150 AYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            999999999999999999999997654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.47  E-value=4e-12  Score=108.18  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|..++..+++++|+++|++++++      .+....++.+++.++...+++++|++.++++++++|.+..+++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  114 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLAD------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRF  114 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHH
Confidence            4778899999999999999999999999988      4566789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+|.+|..++++++|++.|+++++++|.+..+...+..+...
T Consensus       115 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (186)
T 3as5_A          115 RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ  156 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            999999999999999999999999999998888777766543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.46  E-value=1.8e-12  Score=118.53  Aligned_cols=109  Identities=22%  Similarity=0.195  Sum_probs=102.4

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+..+..+|.+++..+++++|+++|++++++      .|....++.++|.+|.++|++++|+++++++++++|.+..++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  114 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  114 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH
Confidence            46889999999999999999999999999998      556788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                      +.+|.+|..+|++++|++.|+++++++|++.....
T Consensus       115 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (275)
T 1xnf_A          115 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL  149 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence            99999999999999999999999999999975443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=4e-12  Score=114.49  Aligned_cols=121  Identities=12%  Similarity=0.095  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--------------------cCCChhhHHHHHHHHHHHHHcCCHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK--------------------SGDMATMMEVLSTRASCYKEVGEYKKA  440 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk--------------------~~ddpd~A~aysNrAlcylrLGdyeeA  440 (503)
                      +..+..+|.++...+++++|+++|++++++.+.                    ....+....++.++|.+++.+|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            678999999999999999999999999985221                    003577889999999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          441 VADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       441 LedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++.++++++++|.+..+++.+|.+|..++++++|++.|+++++++|++..+...+..+...
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988888776543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.44  E-value=5e-12  Score=113.48  Aligned_cols=114  Identities=15%  Similarity=0.090  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|.+++..+++++|+++|++++++      .+....++..++.++..++++++|++.++++++++|.+..+++
T Consensus        56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  129 (243)
T 2q7f_A           56 DAIPYINFANLLSSVNELERALAFYDKALEL------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY  129 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3667788888888888888888888888877      4455678888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .+|.+|..++++++|++.|+++++++|++..+...+..+.
T Consensus       130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A          130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            8888888888888888888888888888777766666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.44  E-value=1.5e-13  Score=143.69  Aligned_cols=114  Identities=24%  Similarity=0.326  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|..++++++|++|+++|++|+++      .|....+|.++|.||++++++++|+++|+++++++|++..+++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   78 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   78 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4556777889999999999999999999998      5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ++|.+|..++++++|++.|+++++++|++.++...+..+.
T Consensus        79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  118 (477)
T 1wao_1           79 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  118 (477)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999988887777663

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.43  E-value=1.8e-12  Score=115.74  Aligned_cols=101  Identities=20%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|..++..++|++|++.|+++++        + ...++.++|.||+++|++++|+++|+++++++|.+..+++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   75 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD--------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF   75 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence            455688999999999999999999999961        1 4679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      .+|.+|..++++++|+++|++++++.|++.
T Consensus        76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999999876

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.43  E-value=1.8e-12  Score=135.55  Aligned_cols=116  Identities=7%  Similarity=-0.050  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+..+|..++..++|++|+++|++++++      +|....++.++|.+|+++|++++|+++|+++++++|++..+++
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   95 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLAL------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIAL   95 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4788999999999999999999999999988      5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+|.+|..+|++++|++.|+++++++|++..+...+..+...
T Consensus        96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A           96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888888777654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.43  E-value=4.2e-12  Score=119.20  Aligned_cols=116  Identities=17%  Similarity=0.247  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL  464 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A  464 (503)
                      ..+|..+++.+++++|+++|++++++.+.  +......++..++.|+.++|++++|++.|+++++++|++..+++.+|.+
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  315 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA  315 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            45689999999999999999999988432  1122345688899999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          465 YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       465 y~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      |..+|++++|+++|+++++++|++..+...+.+++.++
T Consensus       316 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          316 YLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887664

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.42  E-value=2e-12  Score=120.66  Aligned_cols=121  Identities=14%  Similarity=0.193  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM---ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd---pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k  456 (503)
                      ....+..+|.+++..+++++|+++|++++++.++..+.   +....++.++|.+|.++|++++|++.++++++++|++..
T Consensus       192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  271 (330)
T 3hym_B          192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS  271 (330)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchH
Confidence            46788999999999999999999999999987654332   455789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +++.+|.+|..+|++++|+++|+++++++|++..+...+..+..
T Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          272 TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=3.4e-12  Score=108.59  Aligned_cols=116  Identities=22%  Similarity=0.262  Sum_probs=106.4

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+..+..+|..++..+++++|+++|++++++      .+....++..++.++...+++++|++.++++++++|.+..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   79 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA   79 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            35778889999999999999999999999876      445678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +.+|.+|..++++++|++.|+++++++|.+..+...+..+..
T Consensus        80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  121 (186)
T 3as5_A           80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999888777776643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.3e-13  Score=110.53  Aligned_cols=96  Identities=17%  Similarity=0.210  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .+..++.+|..++..++|++|+++|++++++      .|....++.++|.|++++|++++|+++|+++++++|++     
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            4678999999999999999999999999998      55678999999999999999999999999999999999     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717          455 -VSVLVQRALLYESMEKYKLGAEDLRTV  481 (503)
Q Consensus       455 -~kAlyrlA~Ay~~LGdyeeAle~LqkA  481 (503)
                       .+++++++.++..++++++|++.|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence             999999999999999999988877643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.41  E-value=7.8e-12  Score=112.22  Aligned_cols=116  Identities=11%  Similarity=0.029  Sum_probs=100.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|.+++..+++++|+++|++++++      .+....++..++.+++++|++++|++.++++++++|.+..+++
T Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  163 (243)
T 2q7f_A           90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRA------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF  163 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH
Confidence            4677888999999999999999999999988      3445678888999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .+|.+|..++++++|++.|+++++++|++..+...+..+...
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  205 (243)
T 2q7f_A          164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY  205 (243)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            999999999999999999999999999888887777766543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.40  E-value=5.1e-12  Score=120.78  Aligned_cols=116  Identities=14%  Similarity=0.117  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+..+|.++++.|++++|+++|++++++      .+....++.+++.++.++|++++|++.|+++++++|++..+++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY  289 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4778899999999999999999999999998      5566789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSN-----------RIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen-----------~eAk~~La~Lqkl  501 (503)
                      .+|.+|..+|++++|++.|+++++++|++           ..+...+..+...
T Consensus       290 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  342 (368)
T 1fch_A          290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM  342 (368)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999988           7777777766544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.39  E-value=5.1e-12  Score=118.68  Aligned_cols=111  Identities=25%  Similarity=0.238  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .++.+..+|..++..|+|++|+++|++++++      .|....++.++|.|++.+|++++|++.++++++++|++..+++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   75 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARL   75 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHH
Confidence            4678999999999999999999999999998      5567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDP---SNRIARSTIH  496 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDP---en~eAk~~La  496 (503)
                      .+|.+|..++++++|++.|+++++++|   ++..+...+.
T Consensus        76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            999999999999999999999999999   7777766664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.39  E-value=4.1e-12  Score=122.65  Aligned_cols=103  Identities=13%  Similarity=0.141  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+..+|.++...+++++|+++|++++++      .|....+|.+++.+|.++|++++|++.|+++++++|++..+++
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  285 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY  285 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence            4678889999999999999999999999988      5566889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      .+|.+|..+|++++|++.|+++++++|++
T Consensus       286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          286 NLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=2.9e-12  Score=119.48  Aligned_cols=113  Identities=13%  Similarity=0.180  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~k  456 (503)
                      .+..++.+|..+++.|+|++|++.|+++++..   ++.+....+++.+|.||+++|++++|+..|++++++.|++   ..
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            57889999999999999999999999999763   2233448899999999999999999999999999998854   67


Q ss_pred             HHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          457 VLVQRALLYES--------MEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       457 AlyrlA~Ay~~--------LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                      +++.+|.+|+.        ++++++|++.|+++++++|++..+...+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  137 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT  137 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence            99999999999        9999999999999999999986665443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.38  E-value=9.2e-12  Score=99.95  Aligned_cols=103  Identities=24%  Similarity=0.322  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..++..++..+++++|+++|++++++      .+....++.+++.++.+.+++++|++.+++++++.|....+++
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  107 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY  107 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence            3667888999999999999999999999988      4456788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      .++.+|..++++++|++.|+++++++|++
T Consensus       108 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          108 NLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999863

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.37  E-value=6.7e-13  Score=119.14  Aligned_cols=97  Identities=13%  Similarity=0.058  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          400 AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLR  479 (503)
Q Consensus       400 AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~Lq  479 (503)
                      +-..|++++++      +|.+..+++++|.+++++|+|++|++.|+++++++|+++.+|+.+|.+|..+|+|++|+++|+
T Consensus        21 ~~~~l~~al~l------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~   94 (151)
T 3gyz_A           21 SGATLKDINAI------PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA   94 (151)
T ss_dssp             TSCCTGGGCCS------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCHHHHhCC------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            33455666655      778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHhhh
Q 010717          480 TVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       480 kALkLDPen~eAk~~La~LqklL  502 (503)
                      ++++++|++..+...+..+...+
T Consensus        95 ~al~l~P~~~~~~~~lg~~~~~l  117 (151)
T 3gyz_A           95 VAFALGKNDYTPVFHTGQCQLRL  117 (151)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHT
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHc
Confidence            99999999999998888876543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.37  E-value=7.8e-12  Score=116.52  Aligned_cols=117  Identities=18%  Similarity=0.136  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcC
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE--------VGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr--------LGdyeeALedaekALkLd  451 (503)
                      ...+++.+|.++++.++|++|++.|++++++.|.   .+....+++.+|.|+++        ++++++|++.|+++++++
T Consensus        51 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  127 (261)
T 3qky_A           51 AADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY  127 (261)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC---CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence            3778999999999999999999999999998443   45667899999999999        999999999999999999


Q ss_pred             CCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 010717          452 DTNVSVL-----------------VQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTIHRLT  499 (503)
Q Consensus       452 Pd~~kAl-----------------yrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~La~Lq  499 (503)
                      |++..+.                 +.+|.+|+.+|+|++|+..|+++++++|++   .++...+..+.
T Consensus       128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~  195 (261)
T 3qky_A          128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY  195 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            9886555                 899999999999999999999999999985   44555554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=1.7e-11  Score=108.11  Aligned_cols=115  Identities=13%  Similarity=0.010  Sum_probs=95.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--cCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV-GEYKKAVADCSKVLE--QDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL-GdyeeALedaekALk--LdPd~~k  456 (503)
                      ....+..+|.+++..+++++|+++|++++++      .+....++.+++.++..+ +++++|++.++++++  .+|....
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  114 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSI------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI  114 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHH
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHH
Confidence            4667888888888888888888888888887      445677888888888888 899999999998888  5666688


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +++.+|.+|..++++++|++.|+++++++|++..+...+..+..
T Consensus       115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  158 (225)
T 2vq2_A          115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM  158 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            88888999999999999999999999988888888777776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.37  E-value=8e-12  Score=114.72  Aligned_cols=115  Identities=20%  Similarity=0.157  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+.++..+|.++...+++++|+++|++++++      .+....++.++|.||..+|++++|+++++++++++|.+..+++
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  146 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFY  146 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHH
Confidence            4566778888888888888888888888877      4455678888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .+|.+++..+++++|++.|+++++++|++..+...+..+..
T Consensus       147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  187 (272)
T 3u4t_A          147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA  187 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            88844444558888888888888888888776666665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.37  E-value=7.3e-12  Score=115.58  Aligned_cols=112  Identities=13%  Similarity=0.091  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS---  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k---  456 (503)
                      .+..++.+|..++..|+|++|++.|+++++..|.   .+....+++++|.||+++|++++|++.|+++++++|++..   
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~   79 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY   79 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence            3567899999999999999999999999987432   3445689999999999999999999999999999998864   


Q ss_pred             HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 010717          457 VLVQRALLYES------------------MEKYKLGAEDLRTVLKIDPSNRIARST  494 (503)
Q Consensus       457 AlyrlA~Ay~~------------------LGdyeeAle~LqkALkLDPen~eAk~~  494 (503)
                      ++|.+|.+|..                  ++++++|+..|+++++++|++..+...
T Consensus        80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a  135 (225)
T 2yhc_A           80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA  135 (225)
T ss_dssp             HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            89999999987                  578999999999999999999765443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.37  E-value=5.2e-12  Score=114.60  Aligned_cols=122  Identities=22%  Similarity=0.245  Sum_probs=107.7

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-----  450 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-----  450 (503)
                      ...+..+..+|.+++..++|++|+++|++++++..+.  .+.+....++.++|.||..+|++++|++++++++++     
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            3478899999999999999999999999999997665  556788999999999999999999999999999998     


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 010717          451 ---DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI--------DPSNRIARSTIHRLT  499 (503)
Q Consensus       451 ---dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL--------DPen~eAk~~La~Lq  499 (503)
                         +|....+++.+|.+|..++++++|++.|++++++        +|....+...+..+.
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  179 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY  179 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence               4667889999999999999999999999999999        665566666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.36  E-value=1.5e-11  Score=111.87  Aligned_cols=114  Identities=15%  Similarity=0.031  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE--QDDTNVSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk--LdPd~~kA  457 (503)
                      ....+..+|.+++..+++++|+++|++++++      .+....++.+++.+|+.+|++++|++.++++++  ..|....+
T Consensus        70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  143 (252)
T 2ho1_A           70 SADAHAALAVVFQTEMEPKLADEEYRKALAS------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV  143 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHH
Confidence            3677888899999999999999999998887      344567778888888888888888888888887  67777778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ++.+|.+|..++++++|++.|+++++++|.+..+...+..+.
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  185 (252)
T 2ho1_A          144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL  185 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            888888888888888888888888888887777766666554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.36  E-value=7.2e-12  Score=124.82  Aligned_cols=121  Identities=12%  Similarity=0.025  Sum_probs=103.6

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC---CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG---DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD---  451 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~---ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd---  451 (503)
                      ...+..+..+|.+++.+|+|++|+++|++|+++.++..   .++..+..|.|+|.+|..+|++++|+.++++++++.   
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            33577888999999999999999999999999977533   245678889999999999999999999999999873   


Q ss_pred             -----CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          452 -----DTNVSVLVQRALLYESME--KYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       452 -----Pd~~kAlyrlA~Ay~~LG--dyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                           +..+.++..+|.++..++  +|++|+++|+++++++|+++++...+..+
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~  181 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA  181 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                 456889999998887764  69999999999999999999887776655

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.36  E-value=3.3e-12  Score=132.47  Aligned_cols=115  Identities=15%  Similarity=0.145  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc--------CCHHHHHHH
Q 010717          381 GAAAKNKGVDNQKA---------GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV--------GEYKKAVAD  443 (503)
Q Consensus       381 A~alk~lGn~~fkq---------GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL--------GdyeeALed  443 (503)
                      ...+..+|.+++..         ++|++|+++|++|+++      +|.+..+|.++|.+|+.+        +++++|+++
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~  243 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM------DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA  243 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence            57888999999999         9999999999999999      567789999999999999        999999999


Q ss_pred             HHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          444 CSKVLEQDD---TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       444 aekALkLdP---d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      |+++++++|   .++.+++++|.+|..+|+|++|+++|+++++++|++.++...+..+...
T Consensus       244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  304 (474)
T 4abn_A          244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF  304 (474)
T ss_dssp             HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999   9999999999999999999999999999999999999888877776544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.36  E-value=2.3e-11  Score=107.28  Aligned_cols=120  Identities=10%  Similarity=-0.032  Sum_probs=102.1

Q ss_pred             CcchHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          377 AGVTGAAAKNKGVDNQKA-GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       377 ~~~~A~alk~lGn~~fkq-GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~  455 (503)
                      .......+..+|..++.. +++++|+++|+++++    .+..+....++.+++.++.++|++++|++.++++++++|.+.
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  147 (225)
T 2vq2_A           72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP  147 (225)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            345667788889999999 999999999999986    223566778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHh
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDP-SNRIARSTIHRLTK  500 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP-en~eAk~~La~Lqk  500 (503)
                      .+++.++.+|..++++++|++.|+++++++| .+..+...+..+..
T Consensus       148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (225)
T 2vq2_A          148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK  193 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999 88888776666644

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.35  E-value=1.9e-11  Score=111.33  Aligned_cols=117  Identities=16%  Similarity=0.019  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|..++..+++++|+++|+++++    .+..+....++.+++.+++++|++++|++.++++++++|.+..+++
T Consensus       104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  179 (252)
T 2ho1_A          104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL  179 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH
Confidence            467788899999999999999999999986    1225677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      .++.+|..++++++|++.|+++++++|.+..+...+..+..
T Consensus       180 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (252)
T 2ho1_A          180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK  220 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999888777766644

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.35  E-value=2e-11  Score=113.81  Aligned_cols=116  Identities=18%  Similarity=0.213  Sum_probs=106.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|.++++.+++++|+++|++++++      .+....++.+++.++..+|++++|++.++++++++|++..+++
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  244 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVEL------RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY  244 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            4678899999999999999999999999988      4566789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPS------------NRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPe------------n~eAk~~La~Lqkl  501 (503)
                      .+|.+|..+|++++|++.|+++++++|+            +..+...+..+...
T Consensus       245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (327)
T 3cv0_A          245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV  298 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999            67777777766543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.35  E-value=1.6e-11  Score=101.63  Aligned_cols=107  Identities=20%  Similarity=0.189  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .+..+..+|..++..++|++|+++|++++++.++..+....+.++.++|.++..+|++++|++++++++++.+..     
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            566778888888888888888888888888877766556666788888888888888888888888888775432     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          455 -VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       455 -~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                       ..+++.+|.+|..++++++|++.|++++++.+
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             55788888888888888888888888887743

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.35  E-value=1.3e-11  Score=119.25  Aligned_cols=117  Identities=16%  Similarity=0.119  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH--------------
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS--------------  445 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedae--------------  445 (503)
                      ....+..+|..+...|++++|++.|++++++      +|....++.++|.+++++|++++|++.++              
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~  189 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL  189 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence            5678899999999999999999999999998      66778999999999999999998865544              


Q ss_pred             --------------------HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHhhh
Q 010717          446 --------------------KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN--RIARSTIHRLTKMV  502 (503)
Q Consensus       446 --------------------kALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen--~eAk~~La~LqklL  502 (503)
                                          ++++++|++..+++.+|.+|..+|++++|++.|+++++++|++  ..++..+..+.+.+
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence                                4567789999999999999999999999999999999999998  78888888776654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.34  E-value=1.2e-11  Score=118.99  Aligned_cols=111  Identities=14%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV-GEYKKAVADCSKVLEQDDTN----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL-GdyeeALedaekALkLdPd~----  454 (503)
                      .+.++.++|.++.+.|+|++|+++|++|+++.++.++....+.+|.++|.+|..+ |++++|+++|++++++.|..    
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~  155 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence            4778999999999999999999999999999887766555678999999999996 99999999999999998754    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          455 --VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       455 --~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                        ..+++++|.+|..+|+|++|+++|++++++.|++..
T Consensus       156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence              567899999999999999999999999999998743

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.34  E-value=1.1e-11  Score=106.31  Aligned_cols=86  Identities=13%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      +|..++.+.++|.+|++.|+|++|++.|+++|+++|.++.+++++|.+|..+|++++|+++|+++++++|++..+...+.
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHhhh
Q 010717          497 RLTKMV  502 (503)
Q Consensus       497 ~LqklL  502 (503)
                      .+...+
T Consensus        89 ~~~~~~   94 (126)
T 4gco_A           89 ACLVAM   94 (126)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            776543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.34  E-value=1.1e-11  Score=120.86  Aligned_cols=114  Identities=21%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ...+..+|..+.+.|++++|+++|++++++      .|....++.+++.++.+.|++++|++.++++++++|++..+++.
T Consensus       271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  344 (388)
T 1w3b_A          271 PDAYCNLANALKEKGSVAEAEDCYNTALRL------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN  344 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            344555555555555555555555555555      33344555556666666666666666666666666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++.+|..+|++++|++.|+++++++|++..+...+..+..
T Consensus       345 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~  384 (388)
T 1w3b_A          345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence            6666666666666666666666666666655555555443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.34  E-value=2.2e-11  Score=124.79  Aligned_cols=121  Identities=18%  Similarity=0.224  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATM-MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~-A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ....+..++..+.+.|++++|+++|++++++.++.+.++.. ..+|..++.+|.+.|++++|++.++++++++|++..++
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            35678888999999999999999999999987765555654 78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +.++.+|..+|++++|++.|+++++++|++..+...+..+..
T Consensus       554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            999999999999999999999999999999999888887643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.33  E-value=8.2e-12  Score=120.52  Aligned_cols=110  Identities=10%  Similarity=0.048  Sum_probs=96.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717          386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMAT--MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL  463 (503)
Q Consensus       386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd--~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~  463 (503)
                      .+|..+.+.+++++|+++|++++++      .|.  ...++.+++.+|.++|++++|++.|+++++++|++..+++.+|.
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  255 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAHQ------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA  255 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHH------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHh------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4588889999999999999999998      344  67899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          464 LYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       464 Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +|..+|++++|++.|+++++++|++..+...+..+...
T Consensus       256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  293 (365)
T 4eqf_A          256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN  293 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999988888777544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.33  E-value=1.9e-11  Score=120.47  Aligned_cols=111  Identities=26%  Similarity=0.245  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+..+|..+++.++|++|+++|++++++      .|....++..++.||+++|++++|+++++++++++|++..+++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   98 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL   98 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            6888999999999999999999999999988      5567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNR---IARSTIH  496 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~---eAk~~La  496 (503)
                      .+|.+|..+|++++|++.|+++++++|.+.   .+...+.
T Consensus        99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  138 (450)
T 2y4t_A           99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI  138 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            999999999999999999999999999988   6655543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=5.5e-12  Score=130.81  Aligned_cols=115  Identities=17%  Similarity=0.126  Sum_probs=107.9

Q ss_pred             chHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQY-ADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY-~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA  457 (503)
                      ..+..++.+|.+++..++| ++|+++|++|+++      +|....+|.++|.||+++|++++|+++|+++++++|+ ..+
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~  172 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVS  172 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHH
Confidence            3688999999999999999 9999999999999      5677899999999999999999999999999999999 799


Q ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          458 LVQRALLYESM---------EKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       458 lyrlA~Ay~~L---------GdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++.+|.+|..+         +++++|++.|+++++++|++..+...+..+..
T Consensus       173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  224 (474)
T 4abn_A          173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL  224 (474)
T ss_dssp             HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999         99999999999999999999988888777653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.33  E-value=4.1e-12  Score=138.15  Aligned_cols=115  Identities=15%  Similarity=0.003  Sum_probs=105.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+..+|.++++.|+|++|++.|++++++      +|.+..+|+++|.+|+++|++++|+++|+++++++|++..+++
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  505 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAER------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKL  505 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            4678889999999999999999999999998      4567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++|.+|..+|+|++ +++|+++++++|++..+...+..+...
T Consensus       506 ~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~  546 (681)
T 2pzi_A          506 ALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA  546 (681)
T ss_dssp             HHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            99999999999999 999999999999999988888877544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.32  E-value=2.4e-11  Score=118.47  Aligned_cols=110  Identities=16%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      .+..+|.++...+++++|++.|++++++      .|....++.+++.+|.++|++++|++.++++++++|+++.+++.+|
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  278 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSL------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA  278 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            3344444444444444444444444443      3344556666666666666666666666666666666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      .+|..+|++++|++.|+++++++|.+..+...+..+
T Consensus       279 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  314 (388)
T 1w3b_A          279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            666666666666666666666666666555555444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.32  E-value=2.7e-11  Score=119.27  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL  464 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A  464 (503)
                      ..+|..+++.+++++|+++|++++++.+.  +......++.+++.++.++|++++|++.|+++++++|++..+++.+|.+
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  338 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA  338 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34499999999999999999999988332  1112256899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          465 YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       465 y~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      |..++++++|+++|+++++++|++..+...+..++..
T Consensus       339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888876543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.32  E-value=1.3e-11  Score=101.55  Aligned_cols=93  Identities=12%  Similarity=0.023  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010717          399 DAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDL  478 (503)
Q Consensus       399 eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~L  478 (503)
                      +|++.|++++++      +|.+..++.++|.+|+.+|++++|+++|+++++++|++..+++.+|.+|..+|++++|++.|
T Consensus         3 ~a~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~   76 (115)
T 2kat_A            3 AITERLEAMLAQ------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAW   76 (115)
T ss_dssp             CHHHHHHHHHTT------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHh------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            588999999987      56678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCC--CHHHHHHHHH
Q 010717          479 RTVLKIDPS--NRIARSTIHR  497 (503)
Q Consensus       479 qkALkLDPe--n~eAk~~La~  497 (503)
                      +++++++|.  +......+..
T Consensus        77 ~~al~~~~~~~~~~~~~~l~~   97 (115)
T 2kat_A           77 ESGLAAAQSRGDQQVVKELQV   97 (115)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhccccccHHHHHHHHH
Confidence            999999884  3444444433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.5e-11  Score=122.20  Aligned_cols=103  Identities=31%  Similarity=0.380  Sum_probs=97.5

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      +.+..++.+|..+++.|+|++|+++|++++++      .| +..+|.+++.||+++|++++|+++|+++++++|++..++
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   76 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALEL------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVL   76 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHH
Confidence            46789999999999999999999999999998      33 378999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      +.+|.+|..+|++++|+..|+++++++|.+
T Consensus        77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  106 (514)
T 2gw1_A           77 LRRASANEGLGKFADAMFDLSVLSLNGDFN  106 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999999865

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.31  E-value=1.5e-11  Score=118.41  Aligned_cols=112  Identities=17%  Similarity=0.077  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--
Q 010717          380 TGAAAKNKGVDNQKA-GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS--  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkq-GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k--  456 (503)
                      .+.++..+|.++... +++++|+++|++|+++.+...+......++.++|.+|+++|+|++|+++|++++++.|+...  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            356788999999996 99999999999999998765544445678999999999999999999999999999987543  


Q ss_pred             -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717          457 -----VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA  491 (503)
Q Consensus       457 -----AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eA  491 (503)
                           +++++|.||..+|++++|+.+|+++++++|.....
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence                 67899999999999999999999999999987543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.31  E-value=7.9e-12  Score=114.77  Aligned_cols=120  Identities=8%  Similarity=0.017  Sum_probs=100.6

Q ss_pred             CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717          377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k  456 (503)
                      .......+..+|.+++..++|++|+++|+++++. +  .+......+|.++|.|+..+|++++|+++++++++++|.+..
T Consensus        33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~  109 (272)
T 3u4t_A           33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-V--NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD  109 (272)
T ss_dssp             TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-S--CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-c--CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH
Confidence            4455667888999999999999999999999873 2  222334677889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Q 010717          457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH-RLT  499 (503)
Q Consensus       457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La-~Lq  499 (503)
                      +++.+|.+|..++++++|++.|+++++++|.+..+...+. .+.
T Consensus       110 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A          110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988887777 443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.31  E-value=2.8e-12  Score=139.43  Aligned_cols=113  Identities=14%  Similarity=-0.001  Sum_probs=106.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+.+++.+|.+++..++|++|++.|++|+++      +|.+..+|.++|.||.++|++++ +++|+++++++|++..+++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~  538 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF  538 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH
Confidence            4678999999999999999999999999999      56678999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ++|.+|..+|++++|+++|+++++++|++.++...+..+.
T Consensus       539 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          539 GLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            9999999999999999999999999999988887776663

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.30  E-value=3.2e-11  Score=106.87  Aligned_cols=118  Identities=14%  Similarity=0.061  Sum_probs=85.2

Q ss_pred             CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCY-KEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcy-lrLGdyeeALedaekALkLdPd~~  455 (503)
                      ......++..+|.++...|++++|++.|++++++      .| +...+..++.+. .+..+..+|++.++++++++|+++
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~------~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~  108 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLE------YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNF  108 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG------GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc------cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCH
Confidence            3455666777777777777777777777777655      22 223333333332 222333456778888888999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHhh
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN--RIARSTIHRLTKM  501 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen--~eAk~~La~Lqkl  501 (503)
                      .+++.+|.+|..+|++++|++.|+++++++|+.  ..+...+..+...
T Consensus       109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~  156 (176)
T 2r5s_A          109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA  156 (176)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999975  5577777766543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.29  E-value=3.2e-11  Score=112.55  Aligned_cols=113  Identities=16%  Similarity=0.092  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          381 GAAAKNKGVDNQKAG-QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       381 A~alk~lGn~~fkqG-DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ...+..+|..++..+ ++++|+++|++++++      .+....+|..++.++..++++++|++.+++++++.|....+++
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  163 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML  163 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHH
Confidence            445666666666666 667777777776655      3344566666777777777777777777777777776666677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .+|.+|..++++++|++.|+++++++|++..+...+..+.
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  203 (330)
T 3hym_B          164 YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVA  203 (330)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            7777777777777777777777777777666655555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.29  E-value=1.1e-11  Score=124.76  Aligned_cols=108  Identities=24%  Similarity=0.311  Sum_probs=93.9

Q ss_pred             CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~  455 (503)
                      .....+..++.+|..+++.|+|++|+++|++++++      +|....+|.++|.||+++|++++|++.|+++++++|++.
T Consensus        20 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~   93 (537)
T 3fp2_A           20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS   93 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH
Confidence            33446889999999999999999999999999998      566789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                      .+++.+|.+|..+|++++|++.|+ ++.++|+...
T Consensus        94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~  127 (537)
T 3fp2_A           94 KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG  127 (537)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHH-HHC-------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh
Confidence            999999999999999999999995 8888887644

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.29  E-value=5.8e-11  Score=113.46  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ...++.+++.+|.+.|++++|++.|+++++++|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+.
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777766666554


Q ss_pred             h
Q 010717          500 K  500 (503)
Q Consensus       500 k  500 (503)
                      .
T Consensus       296 ~  296 (368)
T 1fch_A          296 I  296 (368)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.28  E-value=4.5e-11  Score=98.93  Aligned_cols=108  Identities=16%  Similarity=0.128  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT------  453 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd------  453 (503)
                      .+..+..+|.+++..+++++|+++|++++++.++..+......++.++|.++..++++++|++++++++++.+.      
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence            45688899999999999999999999999998877666667889999999999999999999999999987422      


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      ...+++.+|.+|..+|++++|++.|++++++..+
T Consensus       128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            2568889999999999999999999999988654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.28  E-value=1.1e-11  Score=108.88  Aligned_cols=96  Identities=11%  Similarity=0.013  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          400 AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLR  479 (503)
Q Consensus       400 AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~Lq  479 (503)
                      +-+.|++++++      +|....+++++|.++++.|+|++|+..|+++++++|.++.+++.+|.+|..+|++++|+++|+
T Consensus         6 ~~~~~~~al~~------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   79 (148)
T 2vgx_A            6 GGGTIAMLNEI------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS   79 (148)
T ss_dssp             CCCSHHHHTTC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhHHHHHcC------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34567788776      677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHhh
Q 010717          480 TVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       480 kALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++++++|++..+...+..+...
T Consensus        80 ~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           80 YGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHhcCCCCchHHHHHHHHHHH
Confidence            9999999999988888777544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.27  E-value=1.2e-11  Score=108.41  Aligned_cols=105  Identities=11%  Similarity=0.056  Sum_probs=92.2

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcC
Q 010717          391 NQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL-YESME  469 (503)
Q Consensus       391 ~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A-y~~LG  469 (503)
                      ++..++|++|+++|++++++      .|....+|..+|.+|+..+++++|++.|+++++++|++..+++.+|.+ |+..+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~   93 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS   93 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhccCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            45788999999999999988      566788999999999999999999999999999999999999999999 88999


Q ss_pred             CH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          470 KY--KLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       470 dy--eeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++  ++|++.|+++++++|.+..+...+..+...
T Consensus        94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  127 (177)
T 2e2e_A           94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFM  127 (177)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            99  999999999999999999988888776543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.26  E-value=8.9e-11  Score=90.86  Aligned_cols=83  Identities=22%  Similarity=0.311  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          419 TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       419 d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      ....++.++|.++++.+++++|++.++++++++|++..+++.+|.+|..++++++|++.|+++++++|++..+...+..+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888877777776


Q ss_pred             Hhh
Q 010717          499 TKM  501 (503)
Q Consensus       499 qkl  501 (503)
                      ...
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.25  E-value=1.1e-10  Score=107.56  Aligned_cols=118  Identities=12%  Similarity=0.029  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH------------------cCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE------------------VGEYKKAV  441 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr------------------LGdyeeAL  441 (503)
                      ...+++.+|.++++.++|++|++.|++++++.|+   .+....+++.+|.|+++                  ++++++|+
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~---~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  116 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF  116 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH
Confidence            3568899999999999999999999999988443   33445688899999987                  57899999


Q ss_pred             HHHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHh
Q 010717          442 ADCSKVLEQDDTNVSVL-----------------VQRALLYESMEKYKLGAEDLRTVLKIDPSNRI---ARSTIHRLTK  500 (503)
Q Consensus       442 edaekALkLdPd~~kAl-----------------yrlA~Ay~~LGdyeeAle~LqkALkLDPen~e---Ak~~La~Lqk  500 (503)
                      ..|+++++++|++..+.                 +.+|.+|+..|++++|+..|+++++++|++..   +...+..+..
T Consensus       117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  195 (225)
T 2yhc_A          117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR  195 (225)
T ss_dssp             HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH
Confidence            99999999999986543                 67899999999999999999999999999864   4444444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.25  E-value=5e-11  Score=114.01  Aligned_cols=106  Identities=11%  Similarity=0.005  Sum_probs=95.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS-GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~-~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~----  454 (503)
                      .+.++..+|.+|+..++|++|+++|++|+++..+. .+.+..+.+|.++|.+|.++++|++|++++++++++.+..    
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            46679999999999999999999999999988776 4556777899999999999999999999999999886433    


Q ss_pred             --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 010717          455 --VSVLVQRALLYESME-KYKLGAEDLRTVLKID  485 (503)
Q Consensus       455 --~kAlyrlA~Ay~~LG-dyeeAle~LqkALkLD  485 (503)
                        ..+++++|.+|..+| ++++|+++|++++++.
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence              789999999999999 4799999999999874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.25  E-value=7.9e-11  Score=106.81  Aligned_cols=108  Identities=19%  Similarity=0.129  Sum_probs=98.2

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-----  450 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-----  450 (503)
                      ...+.++..+|.+++..+++++|+++|++++++..+.  .+.+....++.++|.+|+.+|++++|++++++++++     
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  161 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL  161 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            3467889999999999999999999999999987653  335778999999999999999999999999999998     


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          451 ---DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       451 ---dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                         +|....+++.+|.+|..+|++++|++.|++++++.
T Consensus       162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence               67778899999999999999999999999999983

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.24  E-value=9.2e-11  Score=115.63  Aligned_cols=109  Identities=16%  Similarity=0.028  Sum_probs=101.3

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE-----QDDT  453 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk-----LdPd  453 (503)
                      ..+.++..+|.++...++|++|+++|++|+++.++.++....+.++.++|.||..+|++++|+++++++++     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            36788999999999999999999999999999888777777888999999999999999999999999999     7788


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      ...+++.+|.+|..+|++++|++.|++++++.+.
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.24  E-value=8.3e-11  Score=115.64  Aligned_cols=108  Identities=13%  Similarity=0.053  Sum_probs=100.3

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC-C
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE-----QD-D  452 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk-----Ld-P  452 (503)
                      ..+.++..+|.++...|+|++|+++|++|+++.++..+.+..+.++.++|.||..+|++++|+++++++++     .+ |
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence            45778999999999999999999999999999988877778888999999999999999999999999999     45 7


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          453 TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       453 d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      ....+++.+|.+|..+|++++|+++|++++++.+
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999999854

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.23  E-value=1.1e-10  Score=116.00  Aligned_cols=119  Identities=12%  Similarity=0.019  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE---VGEYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr---LGdyeeALedaekALkLdPd~~kA  457 (503)
                      ...+..+|.++++.+++++|+++|++++++.+..........++.+++.++++   +|++++|++.++++++++|++..+
T Consensus       372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  451 (514)
T 2gw1_A          372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA  451 (514)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence            45788899999999999999999999999876544333335589999999999   999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ++.+|.+|..+|++++|++.|+++++++|++.++...+..++
T Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          452 KIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            999999999999999999999999999999988877665443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.23  E-value=3.7e-11  Score=103.17  Aligned_cols=94  Identities=11%  Similarity=-0.019  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717          402 KWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV  481 (503)
Q Consensus       402 k~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkA  481 (503)
                      ..|++++++      +|.....++++|.++++.|++++|++.|+++++++|++..+++.+|.+|..+++|++|+.+|+++
T Consensus         5 ~~l~~al~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A            5 GTLAMLRGL------SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             ----CCTTC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHcC------CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            455666655      67788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHhh
Q 010717          482 LKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       482 LkLDPen~eAk~~La~Lqkl  501 (503)
                      ++++|++..+...+..+...
T Consensus        79 l~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           79 ALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHCTTCTHHHHHHHHHHHH
T ss_pred             HhcCCCCcHHHHHHHHHHHH
Confidence            99999999988888777544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.23  E-value=7.2e-11  Score=107.91  Aligned_cols=107  Identities=15%  Similarity=0.092  Sum_probs=95.5

Q ss_pred             HhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 010717          393 KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYK  472 (503)
Q Consensus       393 kqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdye  472 (503)
                      ..++|++|++.|+++++..  ....+....++..+|.+++.+|++++|++.|+++++++|.+..+++.+|.+|..+++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            3478999999999999752  12245778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          473 LGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       473 eAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +|+++|+++++++|++..+...+..+...
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            99999999999999998888887776543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.23  E-value=7.6e-11  Score=109.84  Aligned_cols=109  Identities=14%  Similarity=0.033  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....++.+|..++..++|++|+++|+++++.      .+....++..++.++.+++++++|++.++++++++|.+..+++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   93 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA   93 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHH
Confidence            3456889999999999999999999999988      5567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST  494 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~  494 (503)
                      .+|.+|..++++++|++.|+++++++|.+..+...
T Consensus        94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  128 (327)
T 3cv0_A           94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV  128 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            99999999999999999999999999987554433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.22  E-value=1.6e-10  Score=89.43  Aligned_cols=84  Identities=24%  Similarity=0.263  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+..+|..++..++|++|+++|++++++      .+....++.++|.|+++++++++|+++++++++++|.+..+++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~   81 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ   81 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence            5678899999999999999999999999998      4566789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 010717          460 QRALLYESME  469 (503)
Q Consensus       460 rlA~Ay~~LG  469 (503)
                      .++.++..+|
T Consensus        82 ~l~~~~~~~g   91 (91)
T 1na3_A           82 NLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.22  E-value=7.9e-11  Score=108.93  Aligned_cols=122  Identities=23%  Similarity=0.267  Sum_probs=105.5

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD----  451 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd----  451 (503)
                      ...+..+..+|.+++..+++++|+++|++++++..+.  .+.+....++.+++.+|..+|++++|++.+++++++.    
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  145 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence            3467889999999999999999999999999987664  5567888999999999999999999999999999884    


Q ss_pred             ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 010717          452 ----DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI--------DPSNRIARSTIHRLT  499 (503)
Q Consensus       452 ----Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL--------DPen~eAk~~La~Lq  499 (503)
                          +....+++.+|.+|..++++++|++.|++++++        .|....+...+..+.
T Consensus       146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  205 (311)
T 3nf1_A          146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY  205 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                556778999999999999999999999999998        555555555555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.22  E-value=7.2e-11  Score=123.42  Aligned_cols=104  Identities=11%  Similarity=0.001  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|.+++..+++++|+++|++++++      ++....++.++|.||.++|++++|++.|+++++++|++..+++
T Consensus        56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  129 (568)
T 2vsy_A           56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDA------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA  129 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4788999999999999999999999999998      5667889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHhCCCCH
Q 010717          460 QRALLYESM---EKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       460 rlA~Ay~~L---GdyeeAle~LqkALkLDPen~  489 (503)
                      .++.+|..+   +++++|++.|+++++++|.+.
T Consensus       130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A          130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence            999999999   999999999999999999863

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.22  E-value=1.4e-10  Score=101.79  Aligned_cols=107  Identities=12%  Similarity=-0.004  Sum_probs=93.2

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC--
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ---DDT--  453 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL---dPd--  453 (503)
                      ..+..+..+|..++..++|++|+++|++++++..+.++.+..+.++.++|.+|..+|++++|++++++++++   .++  
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            367888999999999999999999999999988877777788889999999999999999999999999988   332  


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          454 --NVSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       454 --~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                        ...+++.+|.+|..+|++++|++.|++++++.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence              35578889999999999999999999998774

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.21  E-value=1.4e-10  Score=107.31  Aligned_cols=107  Identities=23%  Similarity=0.258  Sum_probs=97.5

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG--DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ------  450 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~--ddpd~A~aysNrAlcylrLGdyeeALedaekALkL------  450 (503)
                      ..+..+..+|..++..++|++|+++|++++++..+..  +.+....++..++.+|..+|++++|++++++++++      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            4688999999999999999999999999999876643  56788899999999999999999999999999988      


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717          451 --DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       451 --dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD  485 (503)
                        .+....+++.+|.+|..++++++|++.|++++++.
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  141 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR  141 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence              35567899999999999999999999999999985

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.21  E-value=2.5e-10  Score=111.04  Aligned_cols=109  Identities=12%  Similarity=-0.032  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYK----EVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcyl----rLGdyeeALedaekALkLdPd~~  455 (503)
                      ...++..+|.++.+.|++++|++.|++++++.+      +..  +.+++.+|.    ..+++++|+..|+++++++|+++
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p------~~~--~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~  200 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDE------DAT--LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL  200 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc------CcH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH
Confidence            466788888899999999999999888887632      111  111221111    12445555555555555555555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      .+++.+|.+|+.+|++++|++.|+++++++|++.++...+.
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            55555555555555555555555555555555544444333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=1.2e-10  Score=114.39  Aligned_cols=121  Identities=12%  Similarity=0.095  Sum_probs=105.1

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---  454 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---  454 (503)
                      ..+.++..+|.+++..+++++|+++|++|+++.++..+ .+..+.++.++|.||..+|++++|++++++++++.+..   
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  220 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP  220 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh
Confidence            46788999999999999999999999999999888765 56778899999999999999999999999999885432   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCHHHHHHHHHHH
Q 010717          455 ---VSVLVQRALLYESMEKYKLGAEDLRTVLKI-----D-PSNRIARSTIHRLT  499 (503)
Q Consensus       455 ---~kAlyrlA~Ay~~LGdyeeAle~LqkALkL-----D-Pen~eAk~~La~Lq  499 (503)
                         ..+++++|.+|..+|++++|+++|++++++     + |....+...+..+.
T Consensus       221 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  274 (383)
T 3ulq_A          221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH  274 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence               358999999999999999999999999994     5 55556666665554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.8e-10  Score=95.66  Aligned_cols=83  Identities=12%  Similarity=0.107  Sum_probs=77.6

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          419 TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       419 d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      ..+..|.++|.++++.|+|++|++.|+++++++|++..+++.+|.+|..++++++|+++|+++++++|++..+...+..+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999988888777


Q ss_pred             Hhh
Q 010717          499 TKM  501 (503)
Q Consensus       499 qkl  501 (503)
                      ...
T Consensus        82 ~~~   84 (126)
T 3upv_A           82 QIA   84 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.20  E-value=2.8e-11  Score=96.45  Aligned_cols=90  Identities=9%  Similarity=0.068  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMME-VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL  463 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~-aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~  463 (503)
                      +.+|..+++.++|++|++.|++++++      .|.... ++.++|.||+.++++++|+++|+++++++|++..++++   
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR---   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---
Confidence            56788899999999999999999988      556677 89999999999999999999999999999998888755   


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          464 LYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       464 Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                           +.+.+++..|+++++++|++
T Consensus        75 -----~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 -----KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -----HHHHHHHHHHCCTTHHHHCC
T ss_pred             -----HHHHHHHHHHHHHhccCccc
Confidence                 56778888888888887765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.20  E-value=1.4e-10  Score=92.62  Aligned_cols=81  Identities=11%  Similarity=0.133  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN------RIARS  493 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen------~eAk~  493 (503)
                      .+.++.++|.++++.|+|++|++.|+++++++|.+..+++++|.+|..+|++++|+++|+++++++|++      ..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999998      66666


Q ss_pred             HHHHHHh
Q 010717          494 TIHRLTK  500 (503)
Q Consensus       494 ~La~Lqk  500 (503)
                      .+..+..
T Consensus        83 ~~~~~~~   89 (111)
T 2l6j_A           83 RLELAQG   89 (111)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.20  E-value=1.5e-10  Score=110.64  Aligned_cols=106  Identities=12%  Similarity=0.026  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMM-EVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-----  453 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A-~aysNrAlcylrLGdyeeALedaekALkLdPd-----  453 (503)
                      .+.++..+|.+|+..++|++|+++|++|+++.+..++..... .++.++|.+|.++|+|++|++++++++++.+.     
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence            467889999999999999999999999998877665444333 79999999999999999999999999988632     


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 010717          454 -NVSVLVQRALLYESMEKYKLG-AEDLRTVLKID  485 (503)
Q Consensus       454 -~~kAlyrlA~Ay~~LGdyeeA-le~LqkALkLD  485 (503)
                       ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence             277899999999999999999 77799998775

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.20  E-value=2.6e-10  Score=110.88  Aligned_cols=103  Identities=14%  Similarity=0.128  Sum_probs=91.6

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 010717          389 VDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESM  468 (503)
Q Consensus       389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~L  468 (503)
                      ..+...+++++|+++|+++++.      .|....+|.++|.|++++|++++|++.++++++++|+++.++++++.++..+
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~  247 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADK------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL  247 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhCchHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3334458999999999999988      5567889999999999999999999999999999999999999999999999


Q ss_pred             CCHHH-HHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          469 EKYKL-GAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       469 Gdyee-Ale~LqkALkLDPen~eAk~~La~  497 (503)
                      |++++ +.++++++++++|+++.+......
T Consensus       248 g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~  277 (291)
T 3mkr_A          248 GKPPEVTNRYLSQLKDAHRSHPFIKEYRAK  277 (291)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99987 568889999999999887665443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.19  E-value=2.5e-10  Score=96.72  Aligned_cols=99  Identities=11%  Similarity=0.111  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|.+++..++|++|+++|++++++      .+....++.++|.|+.++|++++|+++++++++++|.+..++.
T Consensus        46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  119 (166)
T 1a17_A           46 NAIYYGNRSLAYLRTECYGYALGDATRAIEL------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM  119 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4778999999999999999999999999998      5566889999999999999999999999999999999998885


Q ss_pred             HH--HHHHHHcCCHHHHHHHHHHHHHh
Q 010717          460 QR--ALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       460 rl--A~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      .+  +.++..++++++|++.++++..+
T Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          120 KYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            54  55588899999999999987665

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.19  E-value=1.8e-10  Score=100.39  Aligned_cols=87  Identities=21%  Similarity=0.170  Sum_probs=81.0

Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          416 DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       416 ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                      +++..+..|..+|.++++.++|++|++.|+++++++|++..+++.+|.+|+.+++|++|+++|+++++++|++..+...+
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHhhh
Q 010717          496 HRLTKMV  502 (503)
Q Consensus       496 a~LqklL  502 (503)
                      ..+...+
T Consensus        86 g~~~~~~   92 (164)
T 3sz7_A           86 GLARFDM   92 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            8776543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.19  E-value=1.4e-10  Score=116.55  Aligned_cols=80  Identities=18%  Similarity=0.117  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          419 TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       419 d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      ....++..++.++..++++++|++.++++++++|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+
T Consensus       308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  387 (537)
T 3fp2_A          308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI  387 (537)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666666666666655555555444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.17  E-value=1.9e-10  Score=114.18  Aligned_cols=98  Identities=20%  Similarity=0.128  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      +.++.++|.++++.++|++|+++|++||++      +|....+|+++|.||+.++++++|+++|+++++++|++..+++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  269 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALEL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ  269 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            678999999999999999999999999999      56778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHH-HHHHHHHHHh
Q 010717          461 RALLYESMEKYKLG-AEDLRTVLKI  484 (503)
Q Consensus       461 lA~Ay~~LGdyeeA-le~LqkALkL  484 (503)
                      ++.++..++++++| ...|++++..
T Consensus       270 l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          270 LAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 5567777654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.17  E-value=9.7e-11  Score=113.45  Aligned_cols=105  Identities=12%  Similarity=0.095  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------H
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN------V  455 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~------~  455 (503)
                      .++..+|.+|.. ++|++|+++|++|+++.+...+......++.++|.+|.++|+|++|+++|++++++.+..      .
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            344455555554 555555555555555544433323334455555555555555555555555555543321      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      .+++.++.++..+|++++|+.+|++++ ++|..
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            244445555555555555555555555 55555

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.17  E-value=2.4e-10  Score=109.76  Aligned_cols=110  Identities=19%  Similarity=0.185  Sum_probs=94.8

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN----  454 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~----  454 (503)
                      ..+..+..+|.+++..++|++|+++|++++++.++..+....+.++.++|.+|+.+|++++|++++++++++.+..    
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  264 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  264 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence            3566788899999999999999999999999988877666777789999999999999999999999999887655    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          455 --VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       455 --~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                        ..+++.+|.+|..+|++++|++.|++++++.+..
T Consensus       265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence              6788899999999999999999999999886543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.17  E-value=2.7e-10  Score=110.33  Aligned_cols=110  Identities=13%  Similarity=0.120  Sum_probs=100.8

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---  454 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---  454 (503)
                      ...+..+..+|.+|.+.++|++|+++|++|+++.++.++....+.++.++|.+|.. +++++|+++|++++++.+..   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            35789999999999999999999999999999998877666778999999999998 99999999999999997643   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          455 ---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       455 ---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                         ..+++++|.+|..+|+|++|+++|++++++.+++
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence               6789999999999999999999999999997654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.16  E-value=7.9e-11  Score=100.61  Aligned_cols=71  Identities=14%  Similarity=0.191  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          419 TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       419 d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      +.+.++.++|.++++.|+|++|+++|+++|+++|+++.+|+++|.+|+.+++|++|+++|+++++++|++.
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            45778999999999999999999999999999999999999999999999999999999999999998764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.15  E-value=1.8e-10  Score=94.16  Aligned_cols=82  Identities=12%  Similarity=0.067  Sum_probs=71.1

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS--NRIARST  494 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe--n~eAk~~  494 (503)
                      +|.+..+++++|.+|+++|++++|+++|+++++++|++..+++.+|.+|..+|++++|++.|++++++.|.  +......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999874  3444444


Q ss_pred             HHHH
Q 010717          495 IHRL  498 (503)
Q Consensus       495 La~L  498 (503)
                      +..+
T Consensus        83 l~~~   86 (100)
T 3ma5_A           83 LQDA   86 (100)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.15  E-value=7.2e-10  Score=113.52  Aligned_cols=114  Identities=9%  Similarity=0.032  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..++..|++.|++++|+++|++++++      .+.+..+|..++.+|.+.|++++|++.|++++++.|++..+++
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  445 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL  445 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence            3667788899999999999999999999887      4566788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .++.+|..+|++++|++.|+++++++|.+..+...+..+.
T Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  485 (597)
T 2xpi_A          446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA  485 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            9999999999999999999999999999888777666554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.14  E-value=3.4e-10  Score=108.74  Aligned_cols=120  Identities=17%  Similarity=0.124  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .+..+..+|.+++..+++++|+++|++++++.++..+......++.++|.+|..+|++++|++++++++++.+..     
T Consensus       226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  305 (406)
T 3sf4_A          226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG  305 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH
Confidence            456889999999999999999999999999988877666678899999999999999999999999999986443     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 010717          455 -VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN------RIARSTIHRLT  499 (503)
Q Consensus       455 -~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen------~eAk~~La~Lq  499 (503)
                       ..+++.+|.+|..+|++++|+++|++++++.+..      ..+...+.++.
T Consensus       306 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  357 (406)
T 3sf4_A          306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ  357 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence             6789999999999999999999999999985433      34444444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.14  E-value=3.8e-10  Score=103.98  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .+..+..+|.+++..+++++|+++|++++++.++..+......++.+++.++..+|++++|++.+++++++.+..     
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  261 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV  261 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence            466788999999999999999999999999988776666777899999999999999999999999999887654     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          455 -VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       455 -~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                       ..+++.+|.+|..+|++++|++.|++++++.+.
T Consensus       262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence             778999999999999999999999999998653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=6e-10  Score=110.96  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD--MATMMEVLSTRASCYKEVG--EYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d--dpd~A~aysNrAlcylrLG--dyeeALedaekALkLdPd~~  455 (503)
                      .+..+.++|.+|+..|+|++|+++|++++++.++...  ....+.++.+++.+++.++  +|++|+++|+++++++|+++
T Consensus        93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~  172 (472)
T 4g1t_A           93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP  172 (472)
T ss_dssp             THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence            5677889999999999999999999999999876433  3456789999998887765  69999999999999999999


Q ss_pred             HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          456 SVLVQRALLYES---MEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       456 kAlyrlA~Ay~~---LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      .+++.++.++..   .+++++|++.|+++++++|++..+...+..
T Consensus       173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~  217 (472)
T 4g1t_A          173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL  217 (472)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence            999999988654   577889999999999999999887766653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.12  E-value=8.4e-10  Score=96.81  Aligned_cols=108  Identities=13%  Similarity=0.040  Sum_probs=94.9

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC-
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMA-TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD--TN-  454 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddp-d~A~aysNrAlcylrLGdyeeALedaekALkLdP--d~-  454 (503)
                      ..+.++..+|.++...|++++|+++|++++++.++.++++ ....++.++|.++..+|++++|++++++++++.+  .+ 
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  143 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ  143 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence            4677899999999999999999999999999988777444 6788899999999999999999999999997642  22 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          455 ---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       455 ---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                         ..+++.+|.+|..+|++++|+++|++++++..
T Consensus       144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence               34578899999999999999999999999854

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.12  E-value=4.3e-10  Score=110.82  Aligned_cols=123  Identities=12%  Similarity=0.007  Sum_probs=105.1

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD----  452 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-dpd~A~aysNrAlcylrLGdyeeALedaekALkLdP----  452 (503)
                      ...+..+..+|.+++..+++.+|+++|++|+++.++..+ ....+.++.++|.||..+|++++|++++++++++.+    
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  217 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN  217 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence            346888999999999999999999999999999887654 446788999999999999999999999999998743    


Q ss_pred             --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHh
Q 010717          453 --TNVSVLVQRALLYESMEKYKLGAEDLRTVLK-----IDPSNRIARSTIHRLTK  500 (503)
Q Consensus       453 --d~~kAlyrlA~Ay~~LGdyeeAle~LqkALk-----LDPen~eAk~~La~Lqk  500 (503)
                        ....+++++|.+|..++++++|+++|+++++     .+|....+...+..+..
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  272 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC  272 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence              1256899999999999999999999999999     66666666666665543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.12  E-value=2.6e-10  Score=111.16  Aligned_cols=108  Identities=17%  Similarity=0.149  Sum_probs=90.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .+..+..+|.+++..++|++|+++|++++++.++..+......++.+++.+|+.+|++++|++++++++++.+..     
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  301 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV  301 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            456788889999999999999999999999887766556667788899999999999999999999998887643     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          455 -VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       455 -~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                       ..+++.+|.+|..+|++++|+++|++++++.++
T Consensus       302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             678888899999999999999999998887553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.11  E-value=2.3e-10  Score=109.45  Aligned_cols=118  Identities=15%  Similarity=0.010  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCC
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-------DTN  454 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-------Pd~  454 (503)
                      ..+..+|..++..++|++|+++|++|+++..+..+....+.++.++|.+|..+|+|++|+++|++++++.       +..
T Consensus       116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (293)
T 3u3w_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence            3455689999999999999999999998644443333456789999999999999999999999999532       233


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 010717          455 VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN------RIARSTIHRLT  499 (503)
Q Consensus       455 ~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen------~eAk~~La~Lq  499 (503)
                      ..+++++|.+|..+++|++|++++++++++.++.      ..+...+..+.
T Consensus       196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  246 (293)
T 3u3w_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL  246 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999987543      44455555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.08  E-value=1e-09  Score=104.87  Aligned_cols=106  Identities=16%  Similarity=0.030  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCH--
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE---QDDTNV--  455 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk---LdPd~~--  455 (503)
                      ...++.+|..+...++|++|+++|++|+++..+..+....+.+|.++|.+|..+++|++|+++|+++++   ..++..  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~  194 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence            344567888889999999999999999987554444444577999999999999999999999999994   455542  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          456 --SVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       456 --kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                        .+++++|.+|..+++|++|+++|++++++.+
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence              6899999999999999999999999999864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.08  E-value=7.7e-10  Score=101.95  Aligned_cols=109  Identities=16%  Similarity=0.109  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .+..+..+|.+++..+++++|+++|++++++.++..+......++..++.+|..+|++++|++++++++++.+..     
T Consensus       222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  301 (338)
T 3ro2_A          222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  301 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence            455888999999999999999999999999988776666778899999999999999999999999999885432     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          455 -VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       455 -~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                       ..+++.+|.+|..+|++++|+++|++++++.++.
T Consensus       302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence             5588999999999999999999999999987653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.08  E-value=3e-10  Score=110.79  Aligned_cols=109  Identities=15%  Similarity=0.159  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQ-----------------YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA  442 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGD-----------------Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALe  442 (503)
                      .+.++..+|.++...++                 |++|+++|++++++.+...+.+....++.+++.+|+.+|++++|++
T Consensus       165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  244 (411)
T 4a1s_A          165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE  244 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            45678889999999999                 9999999999999988777677788899999999999999999999


Q ss_pred             HHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          443 DCSKVLEQDDTN------VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       443 daekALkLdPd~------~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      ++++++++.+..      ..+++.+|.+|..++++++|++.|++++++.+..
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  296 (411)
T 4a1s_A          245 HHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL  296 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            999999987543      2388999999999999999999999999998754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.08  E-value=8.2e-10  Score=87.89  Aligned_cols=76  Identities=7%  Similarity=0.196  Sum_probs=69.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHh
Q 010717          425 STRASCYKEVGEYKKAVADCSKVLEQDDTNVS-VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR--STIHRLTK  500 (503)
Q Consensus       425 sNrAlcylrLGdyeeALedaekALkLdPd~~k-AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk--~~La~Lqk  500 (503)
                      .++|.++++.+++++|++.|+++++++|++.. +++.+|.+|..++++++|+++|+++++++|++..+.  ..+.++..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999 999999999999999999999999999999998876  55555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.08  E-value=1.4e-09  Score=90.26  Aligned_cols=84  Identities=17%  Similarity=0.154  Sum_probs=78.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      +..+..+..+|.+++..++|++|+..|+++++++|++..+++.+|.+|+.++++++|+.+|+++++++|++..+...+..
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHhh
Q 010717          498 LTKM  501 (503)
Q Consensus       498 Lqkl  501 (503)
                      +...
T Consensus        86 ~~~~   89 (137)
T 3q49_B           86 CQLE   89 (137)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7644

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.07  E-value=4.6e-10  Score=88.42  Aligned_cols=84  Identities=11%  Similarity=0.137  Sum_probs=77.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 010717          418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS--NRIARSTI  495 (503)
Q Consensus       418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe--n~eAk~~L  495 (503)
                      |....++..+|.++++.+++++|+..++++++++|.+..+++.+|.+|..++++++|+++|+++++++|.  +..+...+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4456788999999999999999999999999999999999999999999999999999999999999999  99988888


Q ss_pred             HHHHhh
Q 010717          496 HRLTKM  501 (503)
Q Consensus       496 a~Lqkl  501 (503)
                      ..+...
T Consensus        83 ~~~~~~   88 (112)
T 2kck_A           83 ADALRY   88 (112)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            877654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.07  E-value=3.4e-09  Score=98.78  Aligned_cols=94  Identities=15%  Similarity=0.053  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLdPd~~k  456 (503)
                      +.+++.+|..++..+++++|+++|+++++.        ....++.++|.+|..    .+++++|+++|+++++++  ++.
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~   75 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN   75 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH
Confidence            334444455555555555555555554431        122344444444444    444444444444444443  444


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 010717          457 VLVQRALLYES----MEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       457 AlyrlA~Ay~~----LGdyeeAle~LqkALkL  484 (503)
                      +++.+|.+|..    .+++++|+++|++++++
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence            44444444444    44444444444444444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.06  E-value=1.3e-09  Score=92.38  Aligned_cols=79  Identities=13%  Similarity=0.080  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ..++.+|.++++.|++++|+..|+++++++|++..+++.+|.+|..+|++++|+++|+++++++|++.++...+..+..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999999999999998888776654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.05  E-value=7.8e-10  Score=99.27  Aligned_cols=98  Identities=12%  Similarity=0.061  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ..++..+|.++++.++|++|+++|++++++      ++....+++++|.||+.++++++|+++|+++++++|++..++..
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  161 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS  161 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            378899999999999999999999999998      56678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHH-HHHHHHHHh
Q 010717          461 RALLYESMEKYKLGA-EDLRTVLKI  484 (503)
Q Consensus       461 lA~Ay~~LGdyeeAl-e~LqkALkL  484 (503)
                      ++.++..+++++++. ..|.+++.+
T Consensus       162 l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          162 YELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999998888 555555543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.05  E-value=1.6e-09  Score=87.03  Aligned_cols=86  Identities=17%  Similarity=0.138  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|.+++..+++++|+++|++++++      .+....++..+|.++.+++++++|+++++++++++|++..+++
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  118 (131)
T 2vyi_A           45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICI------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS  118 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHH
Confidence            3678899999999999999999999999998      4556789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCH
Q 010717          460 QRALLYESMEKY  471 (503)
Q Consensus       460 rlA~Ay~~LGdy  471 (503)
                      .++.++..++++
T Consensus       119 ~l~~~~~~~~~~  130 (131)
T 2vyi_A          119 NLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999886

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=6e-09  Score=97.11  Aligned_cols=107  Identities=14%  Similarity=0.097  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 010717          380 TGAAAKNKGVDNQK----AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       380 ~A~alk~lGn~~fk----qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLd  451 (503)
                      ...++..+|.++..    .+++++|+++|++|+++        ....++.++|.+|..    .+++++|+++|+++++++
T Consensus        37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK  108 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence            35677888888888    88888888888888866        246788888888888    888888888888888874


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          452 DTNVSVLVQRALLYES----MEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       452 Pd~~kAlyrlA~Ay~~----LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                        ++.+++.+|.+|..    .+++++|+++|+++++++  +..+...+..+
T Consensus       109 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~  155 (273)
T 1ouv_A          109 --YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL  155 (273)
T ss_dssp             --CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             --CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence              78888888888888    888888888888888876  44555555444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.03  E-value=2e-09  Score=103.75  Aligned_cols=115  Identities=10%  Similarity=-0.098  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMME-VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~-aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ....+..+|..+.+.+++++|++.|++++++      .|.... +|.+++.++.++|++++|++.|+++++++|....++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  171 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence            4678899999999999999999999999987      334444 899999999999999999999999999988887777


Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          459 VQRALLYES-MEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       459 yrlA~Ay~~-LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +..+.+.+. +|++++|++.|+++++++|++..+...+..+..
T Consensus       172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  214 (308)
T 2ond_A          172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            766665443 689999999999999999988887777666543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.01  E-value=2.3e-10  Score=113.76  Aligned_cols=104  Identities=15%  Similarity=0.101  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR  461 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl  461 (503)
                      .++.++|.++++.++|++|+++|++||++      ++....+|+++|.||+.+++|++|+++|+++++++|++..++..+
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L  304 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTE------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL  304 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            37889999999999999999999999998      567789999999999999999999999999999999999999999


Q ss_pred             HHHH-HHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717          462 ALLY-ESMEKYKLGAEDLRTVLKIDPSNRIA  491 (503)
Q Consensus       462 A~Ay-~~LGdyeeAle~LqkALkLDPen~eA  491 (503)
                      +.+. ...++++++.+.|++++.+.|++...
T Consensus       305 ~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          305 RALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             -------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            9884 45677888999999999999987643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.00  E-value=1.2e-10  Score=121.83  Aligned_cols=103  Identities=12%  Similarity=0.131  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+..+|.++++.++|++|+++|++|+++      +|....+|.++|.+|+++|++++|+++++++++++|++..+++
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  112 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIEL------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM  112 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4788999999999999999999999999998      5677899999999999999999999999999999999999999


Q ss_pred             HHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 010717          460 QRALL--YESMEKYKLGAEDLR-----------TVLKIDPSN  488 (503)
Q Consensus       460 rlA~A--y~~LGdyeeAle~Lq-----------kALkLDPen  488 (503)
                      .++.+  +..++++++|++.++           ++++++|+.
T Consensus       113 ~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          113 KYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99988  888999999999999           888887753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.99  E-value=1.5e-09  Score=112.48  Aligned_cols=91  Identities=21%  Similarity=0.137  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      +.++.++|.++++.++|++|+++|++||++      +|....+|+++|.||+++++|++|+.+|+++++++|++..+++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  390 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ  390 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            678899999999999999999999999999      56678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHH
Q 010717          461 RALLYESMEKYKLGAED  477 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~  477 (503)
                      ++.++..++++++|...
T Consensus       391 l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          391 ISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.99  E-value=3.6e-09  Score=86.05  Aligned_cols=85  Identities=11%  Similarity=0.268  Sum_probs=79.3

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      .+.....|..+|.++++.+++++|++.++++++++|.+..+++.+|.+|..++++++|+++|+++++++|.+..+...+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHHhh
Q 010717          497 RLTKM  501 (503)
Q Consensus       497 ~Lqkl  501 (503)
                      .+...
T Consensus        92 ~~~~~   96 (133)
T 2lni_A           92 AALEA   96 (133)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.98  E-value=7.8e-09  Score=81.77  Aligned_cols=82  Identities=17%  Similarity=0.187  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .+..+..+|.+++..+++++|+..++++++++|.+..+++.+|.+|..++++++|++.|+++++++|.+..+...+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999998888777765


Q ss_pred             hh
Q 010717          500 KM  501 (503)
Q Consensus       500 kl  501 (503)
                      ..
T Consensus        83 ~~   84 (118)
T 1elw_A           83 EF   84 (118)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.97  E-value=4.4e-09  Score=105.21  Aligned_cols=126  Identities=12%  Similarity=0.022  Sum_probs=103.4

Q ss_pred             cccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHHHHcCCHHHHHH
Q 010717          364 GTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMAT-MMEVLSTRASCYKEVGEYKKAVA  442 (503)
Q Consensus       364 aae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd-~A~aysNrAlcylrLGdyeeALe  442 (503)
                      .+...++.+....+. .. .++.+|.++++.++|++|+++|++++..    + ++. ...+++++|.++.++|++++|+.
T Consensus       120 eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~-d~~~~~~a~~~LG~al~~LG~~~eAl~  192 (282)
T 4f3v_A          120 DAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----P-DKFLAGAAGVAHGVAAANLALFTEAER  192 (282)
T ss_dssp             HHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----S-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----C-CcccHHHHHHHHHHHHHHCCCHHHHHH
Confidence            344455555544443 44 8899999999999999999999987643    2 222 35689999999999999999999


Q ss_pred             HHHHHHHcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          443 DCSKVLEQD--DT-NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       443 daekALkLd--Pd-~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      +|++++...  |. ...+++++|.|+..+|+.++|++.|++++.++|+ .++...|..
T Consensus       193 ~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          193 RLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            999999654  55 6789999999999999999999999999999999 888777753

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=2e-09  Score=99.13  Aligned_cols=108  Identities=16%  Similarity=0.040  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG----EYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG----dyeeALedaekALkLdPd~~  455 (503)
                      .+.+++.+|..++..+++++|+++|++|++.        .+..++++++.+|.. +    ++++|+++|+++++.  .++
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~   85 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSK   85 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCH
Confidence            3566777777777777777777777777653        234555556666555 4    566666666665432  355


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 010717          456 SVLVQRALLYES----MEKYKLGAEDLRTVLKIDPS--NRIARSTIHRL  498 (503)
Q Consensus       456 kAlyrlA~Ay~~----LGdyeeAle~LqkALkLDPe--n~eAk~~La~L  498 (503)
                      .+++++|.+|..    .+++++|+++|++++++.+.  +..+...|..+
T Consensus        86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~  134 (212)
T 3rjv_A           86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLI  134 (212)
T ss_dssp             HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence            555555555555    55555555555555555542  24444444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.96  E-value=2.5e-09  Score=93.00  Aligned_cols=88  Identities=16%  Similarity=0.011  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV-SVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~-kAl  458 (503)
                      .+.++.++|.++++.++|++|++.|++||++      +|....+|+++|.||+.+|++++|+++|+++++++|++. .+.
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  135 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKR------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA  135 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence            5678999999999999999999999999999      667789999999999999999999999999999999998 566


Q ss_pred             HHHHHHHHHcCCHHH
Q 010717          459 VQRALLYESMEKYKL  473 (503)
Q Consensus       459 yrlA~Ay~~LGdyee  473 (503)
                      ..+..+...++++++
T Consensus       136 ~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A          136 REMKIVTERRAEKKA  150 (162)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            677777766655443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.95  E-value=5e-09  Score=101.01  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQK-------AGQY-------ADAIKWLSWAVI-LLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC  444 (503)
Q Consensus       380 ~A~alk~lGn~~fk-------qGDY-------~eAIk~YeKALe-L~pk~~ddpd~A~aysNrAlcylrLGdyeeALeda  444 (503)
                      .+..|+.+|..+..       .|++       ++|++.|++|++ +      .|....+|.+++.++.++|++++|++.|
T Consensus        49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~  122 (308)
T 2ond_A           49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIY  122 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            47788888888764       5885       899999999998 5      4567889999999999999999999999


Q ss_pred             HHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          445 SKVLEQDDTNVS-VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       445 ekALkLdPd~~k-AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      +++++++|.+.. +|+.++.++..++++++|+..|+++++++|.+..+.....
T Consensus       123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  175 (308)
T 2ond_A          123 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  175 (308)
T ss_dssp             HHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred             HHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999887 9999999999999999999999999999998765544333

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.95  E-value=2.9e-09  Score=98.12  Aligned_cols=108  Identities=14%  Similarity=0.046  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 010717          381 GAAAKNKGVDNQKAG----QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQDD  452 (503)
Q Consensus       381 A~alk~lGn~~fkqG----DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLdP  452 (503)
                      +.++..+|..|.. +    ++++|+++|++|++.        ....++++++.+|+.    .+++++|+++|++++++.+
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            4455556655555 4    566666666666432        234555555555555    5556666666666555554


Q ss_pred             --CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          453 --TNVSVLVQRALLYES----MEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       453 --d~~kAlyrlA~Ay~~----LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                        ..+.+++++|.+|..    .+++++|+++|++++++ +.+..+...|..+
T Consensus       121 ~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~  171 (212)
T 3rjv_A          121 SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMM  171 (212)
T ss_dssp             SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence              235555666666555    55566666666665555 3344444444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.95  E-value=3.7e-09  Score=87.66  Aligned_cols=87  Identities=14%  Similarity=0.131  Sum_probs=75.2

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ....++..+|.+++..++|++|+++|++++++      .|....++.++|.|+.++|++++|++.+++++++.|++....
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            46788999999999999999999999999999      566789999999999999999999999999999999998776


Q ss_pred             HHHHHHHHHcCCH
Q 010717          459 VQRALLYESMEKY  471 (503)
Q Consensus       459 yrlA~Ay~~LGdy  471 (503)
                      .....+....+++
T Consensus        99 ~~~~ai~~~~~~l  111 (117)
T 3k9i_A           99 SYKQAILFYADKL  111 (117)
T ss_dssp             HTHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHH
Confidence            5554444444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.95  E-value=1.7e-08  Score=97.99  Aligned_cols=108  Identities=11%  Similarity=0.017  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD--------  451 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd--------  451 (503)
                      .+.++..+|..++..|++++|+++|++++++.++.++......++.+++.++..+|++++|++.+++++++.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            445677888888889999999999999998877765544556677888889999999999999998888764        


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          452 DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       452 Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      |....+++.+|.+|..+|++++|++.|++++++.+.
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            223556777888888999999999999998888775

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.94  E-value=7.8e-09  Score=109.95  Aligned_cols=114  Identities=14%  Similarity=0.151  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----DTN-  454 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----Pd~-  454 (503)
                      .+...+..+..+|+|++|+.+|+++|++..+.  ++.++.+..+.+++.+|..+|+|++|+.+++++|++.     +++ 
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            34456667788999999999999999987652  3467889999999999999999999999999999763     454 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Q 010717          455 --VSVLVQRALLYESMEKYKLGAEDLRTVLKI-----DPSNRIARSTIH  496 (503)
Q Consensus       455 --~kAlyrlA~Ay~~LGdyeeAle~LqkALkL-----DPen~eAk~~La  496 (503)
                        ...++++|.+|..+|+|++|+..|+++|++     -|+++.+...+.
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~  439 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEA  439 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence              558899999999999999999999999985     578876665443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.93  E-value=7.7e-09  Score=108.40  Aligned_cols=113  Identities=9%  Similarity=0.112  Sum_probs=95.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHH
Q 010717          388 GVDNQKAGQYADAIKWLSWAVILLEK--SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----DTN---VSV  457 (503)
Q Consensus       388 Gn~~fkqGDY~eAIk~YeKALeL~pk--~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----Pd~---~kA  457 (503)
                      .......|+|++|+++|+++|++..+  -++.+..+..+.+++.+|..+|+|++|+.+++++|++.     +++   ...
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            33444567899999999999998665  24467889999999999999999999999999999762     444   558


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHh
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKI-----DPSNRIARSTIHRLTK  500 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkL-----DPen~eAk~~La~Lqk  500 (503)
                      ++++|.+|..+|+|++|+..|+++|++     .|+++.+......|++
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~  432 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES  432 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence            999999999999999999999999986     5889888876666653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.92  E-value=1.1e-08  Score=90.45  Aligned_cols=96  Identities=14%  Similarity=0.035  Sum_probs=80.9

Q ss_pred             HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHH
Q 010717          382 AAAKNKGVDN-QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN--VSVL  458 (503)
Q Consensus       382 ~alk~lGn~~-fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~--~kAl  458 (503)
                      ..+...+... ....+..+|++.|++++++      +|.+..++.++|.++.++|++++|+..|+++++++|++  ..++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~  147 (176)
T 2r5s_A           74 SYKSLIAKLELHQQAAESPELKRLEQELAA------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK  147 (176)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHH
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHH
Confidence            3333444333 2334455689999999998      66778999999999999999999999999999999976  6699


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALk  483 (503)
                      +.++.+|..+|++++|+.+|+++|.
T Consensus       148 ~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          148 KTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999999875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=9.4e-09  Score=85.30  Aligned_cols=84  Identities=19%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 010717          418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST  494 (503)
Q Consensus       418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~  494 (503)
                      +..+..+..+|.++++.+++++|++.|+++++++|++   ..+++.+|.+|..++++++|+++|+++++++|++..+...
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            4567889999999999999999999999999999987   8999999999999999999999999999999999888877


Q ss_pred             HHHHHhh
Q 010717          495 IHRLTKM  501 (503)
Q Consensus       495 La~Lqkl  501 (503)
                      +..+...
T Consensus       105 ~a~~~~~  111 (148)
T 2dba_A          105 RSQALEK  111 (148)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.89  E-value=2.7e-08  Score=79.12  Aligned_cols=81  Identities=22%  Similarity=0.273  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ...++..++.++.+.+++++|++.++++++++|.+..+++.++.+|..++++++|+..|+++++++|.+..+...+..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999988877777664


Q ss_pred             h
Q 010717          500 K  500 (503)
Q Consensus       500 k  500 (503)
                      .
T Consensus        88 ~   88 (125)
T 1na0_A           88 Y   88 (125)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.89  E-value=6.2e-09  Score=105.57  Aligned_cols=93  Identities=17%  Similarity=0.156  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+.++.++|.++++.++|++|+++|++||++      +|....+|+++|.||++++++++|+++|+++++++|++..++.
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~  345 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA  345 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5678899999999999999999999999988      5677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHH
Q 010717          460 QRALLYESMEKYKLGAEDL  478 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~L  478 (503)
                      .++.++..+++++++.+.+
T Consensus       346 ~l~~~~~~~~~~~~a~k~~  364 (370)
T 1ihg_A          346 ELLKVKQKIKAQKDKEKAA  364 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.89  E-value=9.8e-09  Score=84.25  Aligned_cols=80  Identities=15%  Similarity=0.071  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV---SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTI  495 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~---kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~L  495 (503)
                      ..++++|.++++.|++++|++.++++++++|++.   .+++.+|.+|+.+|++++|++.|+++++++|++   .++...+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3577899999999999999999999999999988   899999999999999999999999999999999   7777777


Q ss_pred             HHHHhh
Q 010717          496 HRLTKM  501 (503)
Q Consensus       496 a~Lqkl  501 (503)
                      ..+...
T Consensus        83 a~~~~~   88 (129)
T 2xev_A           83 GLSQYG   88 (129)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.88  E-value=2.8e-08  Score=82.90  Aligned_cols=83  Identities=18%  Similarity=0.171  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      .+..++.+|..++..++|..|+.+|++|+++.+... .......++.++|.|++++|++++|+..++++++++|++..++
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            366788999999999999999999999999865432 1345788999999999999999999999999999999999998


Q ss_pred             HHHH
Q 010717          459 VQRA  462 (503)
Q Consensus       459 yrlA  462 (503)
                      .++.
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            8876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.86  E-value=1.7e-08  Score=81.31  Aligned_cols=81  Identities=16%  Similarity=0.113  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN-------RIAR  492 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen-------~eAk  492 (503)
                      .+..+..+|.+++..+++++|+..++++++++|.+..+++.+|.+|..++++++|+.+|+++++++|.+       ..+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999998876       6666


Q ss_pred             HHHHHHHh
Q 010717          493 STIHRLTK  500 (503)
Q Consensus       493 ~~La~Lqk  500 (503)
                      ..+..+..
T Consensus        83 ~~la~~~~   90 (131)
T 1elr_A           83 ARIGNSYF   90 (131)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.85  E-value=1.5e-08  Score=93.67  Aligned_cols=81  Identities=14%  Similarity=0.126  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-------NVS-----VLVQRALLYESMEKYKLGAEDLRTVLKI---  484 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd-------~~k-----AlyrlA~Ay~~LGdyeeAle~LqkALkL---  484 (503)
                      .+..+.++|.+++++|+|++|++.|+++|+++|+       +..     +|+++|.+|..+|+|++|+++|+++|++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4678899999999999999999999999999999       555     9999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHh
Q 010717          485 ----DPSNRIAR----STIHRLTK  500 (503)
Q Consensus       485 ----DPen~eAk----~~La~Lqk  500 (503)
                          +|++..+.    ..+..+..
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~  113 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALD  113 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHH
Confidence                99998887    66555543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.83  E-value=5.3e-08  Score=94.55  Aligned_cols=107  Identities=10%  Similarity=-0.074  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM--ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT----  453 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd--pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd----  453 (503)
                      .+..+..+|.+++..|+|++|+++|++++++.++....  +....++.+++.+++.+|++++|++.+++++.+.+.    
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  171 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  171 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence            35567889999999999999999999999998765543  567788999999999999999999999999998765    


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          454 -NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       454 -~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                       ...+++.++.++...|++++|++.+++++++.+
T Consensus       172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence             356888999999999999999999999998843

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.83  E-value=2e-08  Score=104.78  Aligned_cols=120  Identities=10%  Similarity=0.067  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CC
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK--SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----DT  453 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk--~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----Pd  453 (503)
                      +..+...-..+.++++|++|+++|++++++..+  -++.+..+.++.+++.+|..+|+|++|+.+++++|++.     ++
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            344555566788899999999999999986443  23467789999999999999999999999999999763     44


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHh
Q 010717          454 N---VSVLVQRALLYESMEKYKLGAEDLRTVLKI-----DPSNRIARSTIHRLTK  500 (503)
Q Consensus       454 ~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkL-----DPen~eAk~~La~Lqk  500 (503)
                      +   ...++++|.+|..+|+|++|+..|++++++     -|+++.+...+..+.+
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~  421 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE  421 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            4   558999999999999999999999999986     5888877766555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.83  E-value=1.7e-08  Score=93.00  Aligned_cols=100  Identities=13%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCH
Q 010717          397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG---EYKKAVADCSKVLEQD-D-TNVSVLVQRALLYESMEKY  471 (503)
Q Consensus       397 Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG---dyeeALedaekALkLd-P-d~~kAlyrlA~Ay~~LGdy  471 (503)
                      ...+.+.|.++++.      .+...++.+++|.|+.+.+   +.++++..++.+++.+ | +..+++|++|.+|+++++|
T Consensus        14 l~~~~~~y~~e~~~------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y   87 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   87 (152)
T ss_dssp             HHHHHHHHHHHHHT------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHHcc------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence            34455666666543      3346789999999999988   7789999999999998 7 5689999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          472 KLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       472 eeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ++|+++++++|+++|+|.+++.....+++.+
T Consensus        88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           88 EKALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999988888777653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.83  E-value=1.2e-08  Score=98.49  Aligned_cols=105  Identities=13%  Similarity=-0.020  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---------------------------h-cCCChhhHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE---------------------------K-SGDMATMMEVLSTRASCY  431 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p---------------------------k-~~ddpd~A~aysNrAlcy  431 (503)
                      ...++..+|.++...|++++|++.|++++++.+                           + ...+|++..+++++|.+|
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l  229 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL  229 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            467888889999999998888877776532110                           0 011567789999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          432 KEVGEYKKAVADCSKVLEQDDTN--VSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       432 lrLGdyeeALedaekALkLdPd~--~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      +..|++++|++.|+++++++|++  ..++.+++.+|..+|+.++|+..|+++|..
T Consensus       230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            99999999999999999999999  899999999999999999999999998863

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.81  E-value=2e-08  Score=81.93  Aligned_cols=83  Identities=8%  Similarity=-0.020  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--NVSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~~kA  457 (503)
                      .+..++.+|.++++.++|++|+++|++++++      +|....+|.++|.||.++|++++|++.|++++++.|.  +..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            4778999999999999999999999999999      5666789999999999999999999999999998653  3334


Q ss_pred             HHHHHHHHHHc
Q 010717          458 LVQRALLYESM  468 (503)
Q Consensus       458 lyrlA~Ay~~L  468 (503)
                      ...+..++...
T Consensus        80 ~~~l~~~l~~~   90 (100)
T 3ma5_A           80 LSELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            44444444433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.81  E-value=3.8e-08  Score=85.74  Aligned_cols=99  Identities=11%  Similarity=0.040  Sum_probs=87.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      +|..|.....+++|+++|++|++.        .+..++++++.+|..    .+++++|+++|+++.++  .++.+++++|
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg  100 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILG  100 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHH
Confidence            899999999999999999999976        357899999999999    89999999999999987  6899999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          463 LLYES----MEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       463 ~Ay~~----LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      .+|..    .+++++|+++|+++.++  .+..+...|.+
T Consensus       101 ~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~  137 (138)
T 1klx_A          101 YKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN  137 (138)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred             HHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence            99999    99999999999999998  45566555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.80  E-value=3.5e-08  Score=82.24  Aligned_cols=83  Identities=13%  Similarity=0.048  Sum_probs=72.1

Q ss_pred             hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH
Q 010717          418 ATMMEVLSTRASCYKEVGE---YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR---IA  491 (503)
Q Consensus       418 pd~A~aysNrAlcylrLGd---yeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~---eA  491 (503)
                      |.++.++..+|.+++..++   .++|.+.++++|+++|+++++++.+|.+++..|+|++|+++|+++++.+|+++   .+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i   82 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTI   82 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Confidence            5567899999999987776   79999999999999999999999999999999999999999999999999853   44


Q ss_pred             HHHHHHHHh
Q 010717          492 RSTIHRLTK  500 (503)
Q Consensus       492 k~~La~Lqk  500 (503)
                      ...+.++++
T Consensus        83 ~~~I~~A~~   91 (93)
T 3bee_A           83 IESINKAKK   91 (93)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            445554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.80  E-value=3.9e-08  Score=105.78  Aligned_cols=115  Identities=10%  Similarity=0.041  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQ----------YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG--EYKKAVADCSKV  447 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGD----------Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG--dyeeALedaekA  447 (503)
                      ...+|..++.++.+.++          |++|+++|++++++      +|....+|+.|+.++.+++  ++++++++|+++
T Consensus        62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~------~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~  135 (567)
T 1dce_A           62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NPKSYGTWHHRCWLLSRLPEPNWARELELCARF  135 (567)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence            57889999999999888          99999999999998      6677899999999999999  779999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          448 LEQDDTNVSVLVQRALLYESME-KYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       448 LkLdPd~~kAlyrlA~Ay~~LG-dyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++++|++..||+.++.++..++ .+++++++++++++++|.|..+......+..
T Consensus       136 l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~  189 (567)
T 1dce_A          136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  189 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred             HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence            9999999999999999999999 9999999999999999999888777666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.79  E-value=2.6e-08  Score=107.17  Aligned_cols=116  Identities=10%  Similarity=0.011  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAG--QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqG--DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdPd~~k  456 (503)
                      ...+|..++.++.+.+  +|++|+++|.+++++      ++.+..+|..|+.++.+++ .+++++++++++|+++|.+..
T Consensus       106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s  179 (567)
T 1dce_A          106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  179 (567)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred             CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence            5788999999999999  779999999999999      6678899999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          457 VLVQRALLYESM--------------EKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       457 AlyrlA~Ay~~L--------------GdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +|+.++.++..+              +++++|+++++++++++|++..+...++.+...
T Consensus       180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence            999999999986              668999999999999999999998888877543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.78  E-value=3e-08  Score=81.28  Aligned_cols=84  Identities=12%  Similarity=0.055  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--NVSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~~kA  457 (503)
                      ....+..+|.+++..++|++|+++|++++++      +|....+|.++|.||..+|++++|++.|+++++++|.  +..+
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   91 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQV   91 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHH
Confidence            4778999999999999999999999999998      5667889999999999999999999999999999874  3444


Q ss_pred             HHHHHHHHHHcC
Q 010717          458 LVQRALLYESME  469 (503)
Q Consensus       458 lyrlA~Ay~~LG  469 (503)
                      +..+..++..++
T Consensus        92 ~~~l~~~l~~l~  103 (115)
T 2kat_A           92 VKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            444444444433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.76  E-value=3.9e-08  Score=94.75  Aligned_cols=82  Identities=17%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .+..+.++|.++++.|+|++|++.|+++++++|++..+++++|.+|..++++++|++.|+++++++|++..+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999888887765


Q ss_pred             hh
Q 010717          500 KM  501 (503)
Q Consensus       500 kl  501 (503)
                      ..
T Consensus        83 ~~   84 (281)
T 2c2l_A           83 LE   84 (281)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.73  E-value=1.1e-07  Score=79.21  Aligned_cols=81  Identities=15%  Similarity=0.061  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQD-------DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLd-------Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                      +.-++.+|..+++.++|++|+.++++|+++.       .....+++.+|.+|+.+|++++|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4567889999999999999999999999863       345788999999999999999999999999999999999988


Q ss_pred             HHHHHHhh
Q 010717          494 TIHRLTKM  501 (503)
Q Consensus       494 ~La~Lqkl  501 (503)
                      .+..++++
T Consensus        85 n~~~~~~~   92 (104)
T 2v5f_A           85 NLKYFEYI   92 (104)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            77766554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.69  E-value=8e-08  Score=102.20  Aligned_cols=117  Identities=8%  Similarity=-0.079  Sum_probs=98.2

Q ss_pred             CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 010717          375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK--SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ--  450 (503)
Q Consensus       375 ~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk--~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL--  450 (503)
                      ......+..+.++|.+|..+|+|++|+.+|+++|++..+  -++.|+.+..+.|+|.+|..+|+|++|+..|++|+++  
T Consensus       345 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          345 DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            344457888999999999999999999999999998776  3457889999999999999999999999999999976  


Q ss_pred             ---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717          451 ---DDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA  491 (503)
Q Consensus       451 ---dPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eA  491 (503)
                         .|++   .+.+-.++.++..+++|++|...|+++.+..-++..+
T Consensus       425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~  471 (490)
T 3n71_A          425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPM  471 (490)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence               3565   4566788999999999999999999998765444433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.69  E-value=2.9e-08  Score=91.72  Aligned_cols=70  Identities=13%  Similarity=0.140  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-----------CHH
Q 010717          380 TGAAAKNKGVDNQKAGQY----------ADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-----------EYK  438 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY----------~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-----------dye  438 (503)
                      .++.+.++|.++...+++          ++|+..|++||++      +|....+|+++|.+|..++           +++
T Consensus        35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~  108 (158)
T 1zu2_A           35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD  108 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence            588999999999998775          5999999999999      6778999999999999885           899


Q ss_pred             HHHHHHHHHHHcCCCCH
Q 010717          439 KAVADCSKVLEQDDTNV  455 (503)
Q Consensus       439 eALedaekALkLdPd~~  455 (503)
                      +|+++|++||+++|++.
T Consensus       109 eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A          109 LATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhCCCCH
Confidence            99999999999999874

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.66  E-value=2.4e-07  Score=92.98  Aligned_cols=116  Identities=13%  Similarity=-0.017  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHH----HHh---CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHc
Q 010717          380 TGAAAKNKGVDN----QKA---GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYK--KAVADCSKVLEQ  450 (503)
Q Consensus       380 ~A~alk~lGn~~----fkq---GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdye--eALedaekALkL  450 (503)
                      ...++..++.++    ...   +++.++++++.+++++      +|....+|+.|+.++.++++++  ++++.++++|++
T Consensus       102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~  175 (306)
T 3dra_A          102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT  175 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence            456777778777    666   7999999999999998      6677899999999999999998  999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          451 DDTNVSVLVQRALLYESMEK------YKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       451 dPd~~kAlyrlA~Ay~~LGd------yeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +|.+..+|+.++.++..+++      ++++++++++++.++|.|..+...++.+...
T Consensus       176 d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~  232 (306)
T 3dra_A          176 DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER  232 (306)
T ss_dssp             CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            99999999999999999998      9999999999999999999998887776654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.65  E-value=3e-07  Score=92.23  Aligned_cols=113  Identities=13%  Similarity=0.010  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHc
Q 010717          380 TGAAAKNKGVDNQKAG--QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCY----KEV---GEYKKAVADCSKVLEQ  450 (503)
Q Consensus       380 ~A~alk~lGn~~fkqG--DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcy----lrL---GdyeeALedaekALkL  450 (503)
                      ...++..++.++...+  ++++|++++.++|.+      .|...++|+.|..++    ..+   ++++++++.++++|++
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~  139 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS  139 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence            5778888999998888  999999999999988      566678999999998    667   7899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          451 DDTNVSVLVQRALLYESMEKYK--LGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       451 dPd~~kAlyrlA~Ay~~LGdye--eAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +|++..+|+.++.++..+++++  ++++.+.++++++|.|-.+......+
T Consensus       140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l  189 (306)
T 3dra_A          140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL  189 (306)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999988  99999999999999987776554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.62  E-value=2.6e-07  Score=95.43  Aligned_cols=114  Identities=11%  Similarity=-0.065  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATM-MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~-A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ....+..++..+.+.|++++|++.|++++++      .+.. ..+|.+++.++.+.|++++|++.|+++++..|.....+
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~  393 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  393 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence            5778999999999999999999999999987      3333 35888888888888888888888888888888777777


Q ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          459 VQRALL-YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       459 yrlA~A-y~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      +..+.+ +..+|++++|+..|+++++++|++..+...+..+.
T Consensus       394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~  435 (530)
T 2ooe_A          394 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  435 (530)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            666655 34588888888888888888888877776666554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.62  E-value=2.1e-07  Score=95.25  Aligned_cols=105  Identities=17%  Similarity=0.072  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Q 010717          381 GAAAKNKGVDNQKAG---QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQDDT  453 (503)
Q Consensus       381 A~alk~lGn~~fkqG---DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLdPd  453 (503)
                      ..++..+|..++..+   ++++|+++|++|++.        ....++++++.+|..    .+++++|+++|+++++..  
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--  397 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--  397 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence            345556666666544   666667777666654        235677888888888    788888888888888764  


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 010717          454 NVSVLVQRALLYES----MEKYKLGAEDLRTVLKIDPS---NRIARSTI  495 (503)
Q Consensus       454 ~~kAlyrlA~Ay~~----LGdyeeAle~LqkALkLDPe---n~eAk~~L  495 (503)
                      ++.+++++|.+|..    .+++++|+++|+++++++|+   +..+...+
T Consensus       398 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l  446 (490)
T 2xm6_A          398 LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITE  446 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence            57888888888887    78888888888888888844   55554444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.60  E-value=8.9e-07  Score=90.93  Aligned_cols=112  Identities=17%  Similarity=0.101  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdPd~~kAly  459 (503)
                      ..++-.+.....+....++|+++++++|++      +|...++|+.|+.++..++ .++++++.++++|+++|++..+|+
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~  127 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRM------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWH  127 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHH
Confidence            333433444444555567899999999999      7788999999999999999 599999999999999999999999


Q ss_pred             HHHHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          460 QRALLYESM-E-KYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       460 rlA~Ay~~L-G-dyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      .++.++..+ + +++++++.+.++|+++|.|..+-...+.+
T Consensus       128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wv  168 (349)
T 3q7a_A          128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWL  168 (349)
T ss_dssp             HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999998 8 99999999999999999998776554444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.58  E-value=8.9e-07  Score=90.19  Aligned_cols=113  Identities=11%  Similarity=0.017  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAG--QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE-YKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqG--DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd-yeeALedaekALkLdPd~~k  456 (503)
                      ...++..++.++.+.+  +++++++++.+++++      ++.+..+|+.|+.+...++. +++++++++++|+++|.+..
T Consensus       107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S  180 (331)
T 3dss_A          107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  180 (331)
T ss_dssp             CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence            5788999999998888  499999999999998      66778999999999999999 69999999999999999999


Q ss_pred             HHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          457 VLVQRALLYESM--------------EKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       457 AlyrlA~Ay~~L--------------GdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +|+.++.++..+              +.++++++++.+++.++|+|..+...++-+
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l  236 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  236 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999988              568999999999999999999887766544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.57  E-value=1.1e-06  Score=89.96  Aligned_cols=108  Identities=16%  Similarity=0.097  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 010717          380 TGAAAKNKGVDNQK----AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       380 ~A~alk~lGn~~fk----qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLd  451 (503)
                      .+.+++.+|..|+.    .+++++|+++|++|++.        ....++.++|.+|..    .+++++|+++|+++++. 
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  144 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-  144 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence            45677778888887    78888888888888754        235677777777777    77778888888777765 


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          452 DTNVSVLVQRALLYES----MEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       452 Pd~~kAlyrlA~Ay~~----LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                       .++.+++.+|.+|..    .+++++|+++|+++++.  .+..+...|..+.
T Consensus       145 -~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y  193 (490)
T 2xm6_A          145 -GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMY  193 (490)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence             467777777777777    67777777777777765  3555555555543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.49  E-value=2.4e-06  Score=87.00  Aligned_cols=115  Identities=11%  Similarity=0.045  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQ----------YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE--YKKAVADCSKV  447 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGD----------Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd--yeeALedaekA  447 (503)
                      ...++..++.++...++          +.++++++.+++..      +|....+|+.|+.|+..+++  ++++++.|+++
T Consensus        63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  136 (331)
T 3dss_A           63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NPKSYGTWHHRCWLLSRLPEPNWARELELCARF  136 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence            57788888888776665          78999999999988      56678999999999999994  99999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          448 LEQDDTNVSVLVQRALLYESMEK-YKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       448 LkLdPd~~kAlyrlA~Ay~~LGd-yeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++++|.+..+|+.++.++..+++ ++++++++.++++++|.|..+......+..
T Consensus       137 l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~  190 (331)
T 3dss_A          137 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  190 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999 699999999999999999888666655543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.49  E-value=6.6e-07  Score=88.00  Aligned_cols=106  Identities=10%  Similarity=0.075  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC----------------------------------------Chhh
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD----------------------------------------MATM  420 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d----------------------------------------dpd~  420 (503)
                      ..++..+|..|++.|+|++|+++|.+++++.+...+                                        ....
T Consensus        55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  134 (434)
T 4b4t_Q           55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK  134 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence            345677788888888888888777777766543322                                        2233


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQD------DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLd------Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                      +.++.++|.+|..+|+|++|+..+++++...      +....+++.++.+|..+++|++|...|++++++.+
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            4455566666666666666666666655431      22244566666666666666666666666666643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.48  E-value=4.7e-07  Score=89.07  Aligned_cols=106  Identities=12%  Similarity=0.101  Sum_probs=88.6

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+..+..+|..++..|+|.+|+++|++++....+..+.+..++++.+++.+|..+++|++|+..+++++.+.+......
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  212 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT  212 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence            45667888999999999999999999999999888877888999999999999999999999999999998865443344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      ...+.++..++.+..+...|.++.+.
T Consensus       213 ~~~~~~~~~~g~~~~~~~~y~~A~~~  238 (434)
T 4b4t_Q          213 QTVAELDLMSGILHCEDKDYKTAFSY  238 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            56677777777776666677766653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.47  E-value=8.3e-07  Score=91.74  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHHH-------hCCHH-------HHHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQK-------AGQYA-------DAIKWLSWAVI-LLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC  444 (503)
Q Consensus       380 ~A~alk~lGn~~fk-------qGDY~-------eAIk~YeKALe-L~pk~~ddpd~A~aysNrAlcylrLGdyeeALeda  444 (503)
                      ....+...+..+.+       .|+++       +|++.|++|++ +      .|....+|..++.++.+.|++++|++.|
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~------~p~~~~l~~~~~~~~~~~g~~~~A~~~~  344 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIY  344 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT------CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            46788889988876       79987       89999999996 5      4567899999999999999999999999


Q ss_pred             HHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717          445 SKVLEQDDTNV-SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA  491 (503)
Q Consensus       445 ekALkLdPd~~-kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eA  491 (503)
                      ++++++.|.+. .+|+.++.++..++++++|++.|+++++..|.+..+
T Consensus       345 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~  392 (530)
T 2ooe_A          345 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV  392 (530)
T ss_dssp             HHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred             HHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence            99999999885 699999999999999999999999999998876443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.47  E-value=9.7e-07  Score=90.66  Aligned_cols=114  Identities=11%  Similarity=0.019  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAG-QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV-G-EYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqG-DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL-G-dyeeALedaekALkLdPd~~k  456 (503)
                      ...++..++.++...+ ++++++++++++|++      .|....+|+.|..|+.++ + +++++++.++++|+++|++..
T Consensus        87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~  160 (349)
T 3q7a_A           87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH  160 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH
Confidence            5778999999999999 599999999999987      567789999999999998 8 999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          457 VLVQRALLYESMEKYK--------LGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       457 AlyrlA~Ay~~LGdye--------eAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      +|+.++.++..+++++        ++++.++++++++|.|-.+......+.
T Consensus       161 AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL  211 (349)
T 3q7a_A          161 TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR  211 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999988        999999999999999988766666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.46  E-value=3.6e-07  Score=91.35  Aligned_cols=112  Identities=13%  Similarity=0.082  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN--VSV  457 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~--~kA  457 (503)
                      ..+....++..+...|+|++|++.|..++..      .|... +++.++.++++.+++++|+..+++++...+..  ..+
T Consensus       101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a  173 (282)
T 4f3v_A          101 PLAITMGFAACEAAQGNYADAMEALEAAPVA------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA  173 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred             HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence            4566777899999999999999999988754      46666 88999999999999999999999887764221  458


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKID--PS-NRIARSTIHRL  498 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLD--Pe-n~eAk~~La~L  498 (503)
                      +|.+|.+|..+|++++|+++|++++...  |. ..++...+..+
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gla  217 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMA  217 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHH
Confidence            9999999999999999999999998654  54 33444444333

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.43  E-value=9.3e-07  Score=91.03  Aligned_cols=106  Identities=18%  Similarity=0.059  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCH
Q 010717          383 AAKNKGVDNQKAG---QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV----GEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       383 alk~lGn~~fkqG---DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL----GdyeeALedaekALkLdPd~~  455 (503)
                      ++..+|.++.+.+   ++++|+++|+++++.      .+..+..+++++.+|...    +++++|+++|++++   |.++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~  248 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP  248 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH
Confidence            7788999999999   999999999999876      344566667778777655    67788888888776   6777


Q ss_pred             HHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          456 SVLVQRALL-Y--ESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       456 kAlyrlA~A-y--~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .+++++|.+ |  ...+++++|+++|+++++..  +..+...|..+.
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y  293 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLY  293 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence            778888777 3  45677777887777777543  666666666554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.41  E-value=3.9e-06  Score=87.13  Aligned_cols=103  Identities=13%  Similarity=0.041  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcCCChhhHHHHH-------------------------------
Q 010717          380 TGAAAKNKGVDNQKAGQ---YADAIKWLSWAVILLEKSGDMATMMEVLS-------------------------------  425 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGD---Y~eAIk~YeKALeL~pk~~ddpd~A~ays-------------------------------  425 (503)
                      .+-.++.+|..++.+.+   +.+|+.+|++|++++|      +++.+|.                               
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP------~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP------EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            45667788888877654   6889999999999944      4344433                               


Q ss_pred             -------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          426 -------------TRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       426 -------------NrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                                   -++.+++..|++++|++.+++++.++|. ..+|..+|.++...|++++|++.|++|++++|...
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence                         3444555689999999999999999975 56888999999999999999999999999999765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.39  E-value=1.7e-06  Score=75.12  Aligned_cols=93  Identities=13%  Similarity=-0.040  Sum_probs=79.7

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cC
Q 010717          394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYES----ME  469 (503)
Q Consensus       394 qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~----LG  469 (503)
                      .+|+++|+++|++|.+..        +..++  ++.+|.....+++|+++|+++.++  .++.+++++|.+|..    .+
T Consensus         8 ~~d~~~A~~~~~~aa~~g--------~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~   75 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN--------EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK   75 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT--------CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC
T ss_pred             ccCHHHHHHHHHHHHcCC--------CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc
Confidence            467999999999999761        12333  999999999999999999999998  689999999999999    89


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          470 KYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       470 dyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++++|+++|+++.++  .+..+...|..+..
T Consensus        76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~  104 (138)
T 1klx_A           76 DLRKAAQYYSKACGL--NDQDGCLILGYKQY  104 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence            999999999999987  57777777776653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.30  E-value=2.8e-06  Score=87.47  Aligned_cols=105  Identities=16%  Similarity=0.068  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHH-H--HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcC
Q 010717          380 TGAAAKNKGVD-N--QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-----EYKKAVADCSKVLEQD  451 (503)
Q Consensus       380 ~A~alk~lGn~-~--fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-----dyeeALedaekALkLd  451 (503)
                      .+.+++.+|.. +  ...+++++|+++|++|++.        .+..+++++|.+|. .|     ++++|+++|++++   
T Consensus       247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---  314 (452)
T 3e4b_A          247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---  314 (452)
T ss_dssp             STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence            35566677776 3  3567777788887777754        24667777777776 44     7788888887777   


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          452 DTNVSVLVQRALLYES----MEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       452 Pd~~kAlyrlA~Ay~~----LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +.++.+++++|.+|..    .+++++|+++|+++.+.  .+..+...|..+
T Consensus       315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~  363 (452)
T 3e4b_A          315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQL  363 (452)
T ss_dssp             TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence            6777788888877766    44777788888777664  344444444444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.25  E-value=5.6e-06  Score=74.07  Aligned_cols=105  Identities=11%  Similarity=0.071  Sum_probs=84.8

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHH
Q 010717          392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK---AVADCSKVLEQD-D-TNVSVLVQRALLYE  466 (503)
Q Consensus       392 fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyee---ALedaekALkLd-P-d~~kAlyrlA~Ay~  466 (503)
                      ....+...+.+.|.+++..      ......+.+++|.|+.+..+..+   +|..++..++.+ | ..-+.+|.+|..++
T Consensus        12 ~~~~~l~~~~~~y~~e~~~------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y   85 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAA------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   85 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcc------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            3444555666777777654      23456788999999999887766   899998888876 4 46779999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          467 SMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       467 ~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ++|+|++|+++++.+|+++|+|.++......+++.+
T Consensus        86 klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           86 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887776653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.15  E-value=9e-06  Score=82.25  Aligned_cols=105  Identities=17%  Similarity=0.045  Sum_probs=86.5

Q ss_pred             chHHHHHHHHHHHHH---h--C------CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc-----CCHHHHHH
Q 010717          379 VTGAAAKNKGVDNQK---A--G------QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV-----GEYKKAVA  442 (503)
Q Consensus       379 ~~A~alk~lGn~~fk---q--G------DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL-----GdyeeALe  442 (503)
                      ..+..++-.|.....   .  +      ...+|...+++||+++|+    ..+..+|.-+|.+|.++     |+.++|.+
T Consensus       150 ~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          150 VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            356666666655433   1  3      367889999999999432    22667999999999995     99999999


Q ss_pred             HHHHHHHcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 010717          443 DCSKVLEQDDTN-VSVLVQRALLYES-MEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       443 daekALkLdPd~-~kAlyrlA~Ay~~-LGdyeeAle~LqkALkLDPe  487 (503)
                      +|+++|+++|+. +.++|..|..|+. .+++++|.++|+++|+++|.
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999999999975 9999999999988 49999999999999998876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.11  E-value=3.1e-05  Score=72.39  Aligned_cols=119  Identities=17%  Similarity=0.122  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD---MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD---DTN  454 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d---dpd~A~aysNrAlcylrLGdyeeALedaekALkLd---Pd~  454 (503)
                      ..+++.....++..+.|+.|+-.+..++.+.+.+++   ....++++..+|..++..++|.+|+..|+++|.+.   ++.
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            346788889999999999999999999998765443   23467788999999999999999999999997653   111


Q ss_pred             ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          455 ----------------------VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       455 ----------------------~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                                            .+..|+++.||..++++++|+..++.+ -..-..+.+-..|.++.+
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence                                  268899999999999999999998753 112245677777777653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.07  E-value=1.6e-05  Score=82.93  Aligned_cols=93  Identities=5%  Similarity=-0.067  Sum_probs=76.6

Q ss_pred             CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 010717          376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK--SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ---  450 (503)
Q Consensus       376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk--~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL---  450 (503)
                      .....+..+.+++.+|..+|+|++|+++|+++|++..+  -++.|..+..++|+|.+|..+|+|++|+..+++|+++   
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            34457888999999999999999999999999998776  3457889999999999999999999999999999976   


Q ss_pred             --CCCCHH---HHHHHHHHHHHc
Q 010717          451 --DDTNVS---VLVQRALLYESM  468 (503)
Q Consensus       451 --dPd~~k---AlyrlA~Ay~~L  468 (503)
                        .|+++.   .+.+++.++..+
T Consensus       404 ~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          404 THGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHH
Confidence              366643   445556655543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.07  E-value=2.3e-05  Score=72.05  Aligned_cols=83  Identities=12%  Similarity=0.003  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          380 TGAAAKNKGVDNQKAG---QYADAIKWLSWAVILLEKSGDMA-TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqG---DY~eAIk~YeKALeL~pk~~ddp-d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~  455 (503)
                      ..++.+++|.++.+..   ++.+++.++++.++..     .| ...++++++|..|+++++|++|+++++++|+++|++.
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~  105 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  105 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            5778999999999988   7889999999999862     14 5678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 010717          456 SVLVQRALLYES  467 (503)
Q Consensus       456 kAlyrlA~Ay~~  467 (503)
                      ++...+-.+-..
T Consensus       106 QA~~Lk~~ie~~  117 (152)
T 1pc2_A          106 QAKELERLIDKA  117 (152)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988776655433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.05  E-value=4.2e-05  Score=77.45  Aligned_cols=117  Identities=9%  Similarity=-0.044  Sum_probs=88.7

Q ss_pred             cHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          366 TTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS  445 (503)
Q Consensus       366 e~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedae  445 (503)
                      ...++.+...... ....+..+|.+++..|++++|+++|.+.|+..+    .....+++..++.|++++++.++|.+.++
T Consensus        86 ~~~l~~l~~~~~~-~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~  160 (310)
T 3mv2_B           86 IEELENLLKDKQN-SPYELYLLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFD  160 (310)
T ss_dssp             CHHHHHTTTTSCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3445544433222 244557899999999999999999999975411    13678899999999999999999999999


Q ss_pred             HHHHcCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHhCCC
Q 010717          446 KVLEQDDT----NVSVLVQR--ALLYESME--KYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       446 kALkLdPd----~~kAlyrl--A~Ay~~LG--dyeeAle~LqkALkLDPe  487 (503)
                      +..+.+|+    .-..++.+  +-+.+..|  ++++|+..|+++++..|+
T Consensus       161 ~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          161 NYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            99999983    22344444  44466556  999999999999988886

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.99  E-value=2.5e-05  Score=64.83  Aligned_cols=69  Identities=17%  Similarity=0.053  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717          380 TGAAAKNKGVDNQKAGQ---YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGD---Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~  454 (503)
                      .++.+..+|.+++..++   ..+|.+++++||++      +|....++..+|..+++.|+|++|+.+++++++.+|..
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            57788999999987666   79999999999999      77788999999999999999999999999999999873

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.99  E-value=3e-05  Score=81.21  Aligned_cols=83  Identities=6%  Similarity=-0.095  Sum_probs=71.9

Q ss_pred             CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 010717          375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK--SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ--  450 (503)
Q Consensus       375 ~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk--~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL--  450 (503)
                      ......+..+.++|.+|..+|+|++|+.+|+++|++..+  -++.|+.+..|+|+|.+|..+|+|++|+..|++|+++  
T Consensus       334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            344457888999999999999999999999999998776  2457889999999999999999999999999999986  


Q ss_pred             ---CCCCHHH
Q 010717          451 ---DDTNVSV  457 (503)
Q Consensus       451 ---dPd~~kA  457 (503)
                         .|+++..
T Consensus       414 ~~lG~~Hp~~  423 (433)
T 3qww_A          414 VAHGKDHPYI  423 (433)
T ss_dssp             HHTCTTCHHH
T ss_pred             HHcCCCChHH
Confidence               3666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.96  E-value=3.6e-05  Score=91.35  Aligned_cols=106  Identities=16%  Similarity=0.116  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD--------  452 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP--------  452 (503)
                      ...+...|+.++..++|++|+.+|.+|              ..|..++.||.++|++++|++.++++...+.        
T Consensus      1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ac 1260 (1630)
T 1xi4_A         1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 1260 (1630)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            356778999999999999999999886              3788899999999999999999998854332        


Q ss_pred             -----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          453 -----------------TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       453 -----------------d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                                       .+++.+..++..|..+|.|++|+..|+.+|.+++.+..+...|..+..
T Consensus      1261 ve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A         1261 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred             hhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence                             133445567778999999999999999999999999888877776643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.95  E-value=1.3e-05  Score=85.01  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD---------  452 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP---------  452 (503)
                      ..+..+|+.++..|+|++|+.+|.++              ..|..++.|+.++|+|++|++.++++.  ++         
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~a  186 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFA  186 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHH
Confidence            47888888888888888888888765              367788888888888888888888872  22         


Q ss_pred             ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          453 ------------------TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       453 ------------------d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                                        .+++-+..+..+|...|++++|+..|+++|.+++.+..+...|..+..
T Consensus       187 Cv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~  252 (449)
T 1b89_A          187 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  252 (449)
T ss_dssp             HHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                              111122233478999999999999999999999999888888876643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.92  E-value=0.0001  Score=74.65  Aligned_cols=114  Identities=8%  Similarity=-0.184  Sum_probs=87.4

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChh----hHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHc
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMAT----MMEVLSTRASC--YKEVG--EYKKAVADCSKVLEQ  450 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd----~A~aysNrAlc--ylrLG--dyeeALedaekALkL  450 (503)
                      ...+++.....++.+.++.+.|.+.+++..+.      +++    +-.++.+++..  .+..|  ++.+|+..|+++...
T Consensus       134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~  207 (310)
T 3mv2_B          134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNA------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT  207 (310)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            36778888999999999999999999998877      331    23444555555  55556  899999999999888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHH
Q 010717          451 DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI----------DPSNRIARSTIHRLT  499 (503)
Q Consensus       451 dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL----------DPen~eAk~~La~Lq  499 (503)
                      .|++......+. +++.+|++++|.+.++.++++          +|+++++...+..|.
T Consensus       208 ~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~  265 (310)
T 3mv2_B          208 FPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLA  265 (310)
T ss_dssp             SCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHH
Confidence            887433333333 999999999999999988887          488888876654443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.73  E-value=0.00049  Score=62.91  Aligned_cols=83  Identities=7%  Similarity=0.085  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          420 MMEVLSTRASCYKEVGEY---KKAVADCSKVLEQDDT-NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdy---eeALedaekALkLdPd-~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                      .....+++|.|+.+-.+-   .+++..++..++..|. .-+.+|.+|..++++++|++|+++++.+|+++|+|.++....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            456788889999887764   5789999999998884 567999999999999999999999999999999999998887


Q ss_pred             HHHHhhh
Q 010717          496 HRLTKMV  502 (503)
Q Consensus       496 a~LqklL  502 (503)
                      ..+++.+
T Consensus       118 ~~Ie~~i  124 (144)
T 1y8m_A          118 SMVEDKI  124 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.72  E-value=0.00021  Score=64.63  Aligned_cols=83  Identities=7%  Similarity=0.085  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          420 MMEVLSTRASCYKEVGEY---KKAVADCSKVLEQDDT-NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       420 ~A~aysNrAlcylrLGdy---eeALedaekALkLdPd-~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                      .....+++|.|+.+..+.   .++|..++..++.+|. .-+.+|.+|..++++|+|++|+++++.+|+++|+|.++....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            356777788888877654   5688888888888874 477899999999999999999999999999999999888777


Q ss_pred             HHHHhhh
Q 010717          496 HRLTKMV  502 (503)
Q Consensus       496 a~LqklL  502 (503)
                      ..+++.+
T Consensus       119 ~~Ie~ki  125 (134)
T 3o48_A          119 SMVEDKI  125 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.57  E-value=0.00027  Score=84.09  Aligned_cols=92  Identities=13%  Similarity=0.007  Sum_probs=77.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHH--------------------HHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717          387 KGVDNQKAGQYADAIKWLSWAV--------------------ILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSK  446 (503)
Q Consensus       387 lGn~~fkqGDY~eAIk~YeKAL--------------------eL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaek  446 (503)
                      .|.++...+.|++|.++|+++-                    ++.+    ..+...+|+++|.++...|++++|+..|.+
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Ae----rvn~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAE----RCNEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            4888888888888887776643                    2222    234567999999999999999999999977


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717          447 VLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       447 ALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe  487 (503)
                      +     ++..+|++.+.++..+|+|++|+++|+.+.+..++
T Consensus      1131 A-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1131 A-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             c-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            6     78999999999999999999999999999998855

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.27  E-value=0.00099  Score=62.24  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=69.9

Q ss_pred             CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------------ChhhHHHHHHHHHHHHHcCCH
Q 010717          377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-------------------MATMMEVLSTRASCYKEVGEY  437 (503)
Q Consensus       377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-------------------dpd~A~aysNrAlcylrLGdy  437 (503)
                      +..+++.+..+|+.+|.+++|..|+..|++||.+.....+                   ...+.++.+.++.||.+++++
T Consensus        59 p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~  138 (167)
T 3ffl_A           59 PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD  138 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence            3457888999999999999999999999999987653221                   233568999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717          438 KKAVADCSKVLEQDDTNVSVLVQRALLYE  466 (503)
Q Consensus       438 eeALedaekALkLdPd~~kAlyrlA~Ay~  466 (503)
                      ++|+..++..-. .-..++..+.+|..|.
T Consensus       139 ~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          139 KDAIAILDGIPS-RQRTPKINMLLANLYK  166 (167)
T ss_dssp             HHHHHHHHTSCG-GGCCHHHHHHHHHHCC
T ss_pred             HHHHHHHhcCCc-hhcCHHHHHHHHHHhc
Confidence            999999866432 2356888888887663

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.15  E-value=0.0051  Score=57.07  Aligned_cols=113  Identities=13%  Similarity=-0.047  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717          380 TGAAAKNKGVDNQKAGQY------ADAIKWLSWAVILLEK--SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY------~eAIk~YeKALeL~pk--~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd  451 (503)
                      ..+.+........+.|+.      ++-++.|++|+...|-  ...-..++.+|...|.. ..+++.++|.+.|+.|+.++
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence            467788888888888888      8888999999987653  22234677888888755 68899999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          452 DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       452 Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                      ...++.|+..|.--...++.++|...+.+++-+.|...+...
T Consensus        91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            888999999999999999999999999999999998866543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.07  E-value=0.0029  Score=56.47  Aligned_cols=81  Identities=14%  Similarity=0.016  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          380 TGAAAKNKGVDNQKAGQYAD---AIKWLSWAVILLEKSGDMA-TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~e---AIk~YeKALeL~pk~~ddp-d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~  455 (503)
                      ..++.++.+..+.+..+-.+   +|.+++..+.-     ..| ..-++++.+|..++++|+|++|+++++.+|+++|+|.
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            46778888999988887666   88888876643     113 5678888999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 010717          456 SVLVQRALLY  465 (503)
Q Consensus       456 kAlyrlA~Ay  465 (503)
                      +|.-.+..+-
T Consensus       109 QA~~Lk~~i~  118 (126)
T 1nzn_A          109 QAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877665554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.96  E-value=0.011  Score=60.63  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-----cCCC-----------hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEK-----SGDM-----------ATMMEVLSTRASCYKEVGEYKKAVADCS  445 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk-----~~dd-----------pd~A~aysNrAlcylrLGdyeeALedae  445 (503)
                      ..+...+......++..+|++.|.+|+.+-.-     ....           .....++..++.+++.+|++++|+..++
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34445566666789999999999999976321     1000           1223455667888999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLK  483 (503)
Q Consensus       446 kALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALk  483 (503)
                      +++..+|.+-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.90  E-value=0.0072  Score=61.18  Aligned_cols=79  Identities=9%  Similarity=-0.032  Sum_probs=61.5

Q ss_pred             hhhHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 010717          418 ATMMEVLSTRASCYKE---V--G------EYKKAVADCSKVLEQDDTN--VSVLVQRALLYESM-----EKYKLGAEDLR  479 (503)
Q Consensus       418 pd~A~aysNrAlcylr---L--G------dyeeALedaekALkLdPd~--~kAlyrlA~Ay~~L-----GdyeeAle~Lq  479 (503)
                      +.++++++=.|.++..   .  +      ...+|...++++|++||+.  ..+|..+|.+|..+     |+.++|.++|+
T Consensus       149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe  228 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE  228 (301)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence            4566666666666533   2  2      2688999999999999995  55999999999996     99999999999


Q ss_pred             HHHHhCCCC-HHHHHHHH
Q 010717          480 TVLKIDPSN-RIARSTIH  496 (503)
Q Consensus       480 kALkLDPen-~eAk~~La  496 (503)
                      ++|+|+|+. ..+.....
T Consensus       229 rAL~LnP~~~id~~v~YA  246 (301)
T 3u64_A          229 HLTRYCSAHDPDHHITYA  246 (301)
T ss_dssp             HHHHHCCTTCSHHHHHHH
T ss_pred             HHHHhCCCCCchHHHHHH
Confidence            999999965 44444433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.87  E-value=0.0089  Score=62.34  Aligned_cols=100  Identities=14%  Similarity=0.062  Sum_probs=84.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCH--H--HH
Q 010717          386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD---DTNV--S--VL  458 (503)
Q Consensus       386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd---Pd~~--k--Al  458 (503)
                      .++..|+..++|.+|++.+.+.++-+.+..+.....+++.....+|..++++.++...+++|....   +.++  .  ..
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            679999999999999999999999887766567788999999999999999999999999997653   1222  3  34


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 010717          459 VQRALLYE-SMEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       459 yrlA~Ay~-~LGdyeeAle~LqkALkLD  485 (503)
                      ..-|.+++ ..++|++|..+|.++++-.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            44588899 8999999999999998643

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.86  E-value=0.013  Score=52.88  Aligned_cols=83  Identities=17%  Similarity=0.059  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAGQY---ADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY---~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k  456 (503)
                      ..+..++.+..+.+..+-   .++|++++..++..     ....-++++.+|..++++|+|++|+++++.+|+++|++.+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            567888899888887754   56888888877641     1245788888999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH
Q 010717          457 VLVQRALLYES  467 (503)
Q Consensus       457 AlyrlA~Ay~~  467 (503)
                      |.-.+..+-..
T Consensus       114 A~~Lk~~Ie~k  124 (134)
T 3o48_A          114 VGALKSMVEDK  124 (134)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            87766655443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.80  E-value=0.0027  Score=65.91  Aligned_cols=75  Identities=9%  Similarity=0.013  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+.++..++..++..|++++|++.+++|+++      ++ ....|..+|.++...|++++|++.|++|+.++|.....++
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L------n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~  348 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL------EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW  348 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence            4667777888888899999999999999999      33 3567788999999999999999999999999997764433


Q ss_pred             HH
Q 010717          460 QR  461 (503)
Q Consensus       460 rl  461 (503)
                      ..
T Consensus       349 ~~  350 (372)
T 3ly7_A          349 IE  350 (372)
T ss_dssp             HH
T ss_pred             Hh
Confidence            33

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.71  E-value=0.018  Score=52.67  Aligned_cols=81  Identities=17%  Similarity=0.064  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAGQY---ADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY---~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k  456 (503)
                      ..+..++.+..+.+..+-   .++|.+++..+.-   .+  ...-++++.+|..++++++|++|+++++.+|+++|+|.+
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---Cc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            577889999999988764   4688888887753   11  245678888999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 010717          457 VLVQRALLY  465 (503)
Q Consensus       457 AlyrlA~Ay  465 (503)
                      |.-.+..+-
T Consensus       113 A~~Lk~~Ie  121 (144)
T 1y8m_A          113 VGALKSMVE  121 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            876665544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.63  E-value=0.015  Score=64.22  Aligned_cols=118  Identities=8%  Similarity=-0.037  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--------cCCC--------hhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK--------SGDM--------ATMMEVLSTRASCYKEVGEYKKAVADC  444 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk--------~~dd--------pd~A~aysNrAlcylrLGdyeeALeda  444 (503)
                      ...+...+....+.+++++|.+.|+++++.++.        .+..        .....+|...+.+..+.++.+.|.+.+
T Consensus       378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf  457 (679)
T 4e6h_A          378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF  457 (679)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            445666777778888899999999998876421        1100        024457888888888888889999999


Q ss_pred             HHHHHc-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          445 SKVLEQ-DDTNVSVLVQRALLYESME-KYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       445 ekALkL-dPd~~kAlyrlA~Ay~~LG-dyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      .+|++. .+...+.|...+.+...++ +++.|...|+++|+..|.+........++
T Consensus       458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f  513 (679)
T 4e6h_A          458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF  513 (679)
T ss_dssp             HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            999887 4444566666666666654 48899999999999888887765444443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.58  E-value=0.0024  Score=67.83  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---------hcCC----------ChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLE---------KSGD----------MATMMEVLSTRASCYKEVGEYKKAVAD  443 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~p---------k~~d----------dpd~A~aysNrAlcylrLGdyeeALed  443 (503)
                      .+..++.++++.|+|++|++.|.+|.....         ..++          --..+.-+..+..+|.+.|++++|+..
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~l  229 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM  229 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence            467889999999999999999999853200         0000          001111233456889999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 010717          444 CSKVLEQDDTNVSVLVQRALLYESM--EKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       444 aekALkLdPd~~kAlyrlA~Ay~~L--GdyeeAle~LqkALkLDP  486 (503)
                      +++++.+++.+..++..++.+|.+-  ++..+.++.|.+.+.+.|
T Consensus       230 Le~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          230 LEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence            9999999999999999998888654  455566666655444433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.41  E-value=0.019  Score=63.42  Aligned_cols=99  Identities=8%  Similarity=0.005  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------
Q 010717          380 TGAAAKNKGVDNQKAGQYADAI-KWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ--------  450 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAI-k~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL--------  450 (503)
                      ....|...+..+...++.++|+ +.|++|+..+      |....+|..++.+..+.+++++|.+.|++++..        
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~  415 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCI------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL  415 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence            4678888899899999999997 9999999874      345678899999999999999999999999975        


Q ss_pred             ---CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          451 ---DDT-----------NVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       451 ---dPd-----------~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                         .|.           ...+|...+......++.+.|...|.+|++.
T Consensus       416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               243           3457888888888899999999999999987

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.031  Score=57.99  Aligned_cols=104  Identities=14%  Similarity=-0.035  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC--
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ---DDTN--  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL---dPd~--  454 (503)
                      ...++..+|..|++.||+.+|++.|.++.+.+..   ......++.....+++..+++..+..+++++..+   .+++  
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~  206 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER  206 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence            3456788999999999999999999999887543   3456788888999999999999999999998765   2333  


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          455 -VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       455 -~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                       .+..+..|.++...++|.+|...|.+++.-..
T Consensus       207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence             23445568888999999999999999887644

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.022  Score=64.08  Aligned_cols=86  Identities=15%  Similarity=0.089  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHHHHH----hcC-CC-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717          396 QYADAIKWLSWAVILLE----KSG-DM-------ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL  463 (503)
Q Consensus       396 DY~eAIk~YeKALeL~p----k~~-dd-------pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~  463 (503)
                      +--+|+....++++-..    ... .+       +....++..-+..++..++|+-|++.+++|+.+.|...+.|++|+.
T Consensus       300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~  379 (754)
T 4gns_B          300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR  379 (754)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            45568888777774211    111 01       1234466667888889999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 010717          464 LYESMEKYKLGAEDLRTV  481 (503)
Q Consensus       464 Ay~~LGdyeeAle~LqkA  481 (503)
                      ||..+++|+.|+-.+...
T Consensus       380 vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          380 CHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccHHHHHHHHhcC
Confidence            999999999999887654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.11  Score=54.37  Aligned_cols=105  Identities=13%  Similarity=0.108  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCC--
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE---QDDTN--  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk---LdPd~--  454 (503)
                      ++.....++..++..|+|.+|.+.+.....-.....+.....+++.....+|+..+++.+|...++++..   -.+..  
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            6677788999999999999999999987643322333455678888999999999999999999998753   12233  


Q ss_pred             HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          455 VS--VLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       455 ~k--AlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      .+  .+...|..+...++|.+|..+|.++++.
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            23  4445689999999999999999999875

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.43  E-value=0.23  Score=47.44  Aligned_cols=99  Identities=15%  Similarity=0.105  Sum_probs=74.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hc-------------
Q 010717          386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL--EQ-------------  450 (503)
Q Consensus       386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL--kL-------------  450 (503)
                      .++..++-.|+|..|+-.+.+.           ..++..+-.++||.++++|.+|+..++..|  +.             
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~l-----------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f  106 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHKL-----------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM  106 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTC-----------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred             hhhhhhhhcchHhHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccee
Confidence            4577778888877776655331           235566667899999999999999999999  32             


Q ss_pred             --CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717          451 --DDTNVSVLVQ-RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI  495 (503)
Q Consensus       451 --dPd~~kAlyr-lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L  495 (503)
                        +|.+-+..+. +|.++..+++.+||+.+|..-..++|-...++..+
T Consensus       107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli  154 (242)
T 3kae_A          107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL  154 (242)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence              2445555444 59999999999999999999999998766655443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.38  E-value=0.21  Score=52.76  Aligned_cols=99  Identities=10%  Similarity=-0.002  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD-TNVSVLV  459 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP-d~~kAly  459 (503)
                      ...|..+-..|.+.|++++|+++|++..+.    +-.| +...|..+-..|.+.|+.++|++.+++.++..- -+...|.
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~  179 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA  179 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            556777888999999999999999987643    2233 356778788889999999999999999887642 2566788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      .+-.+|...|++++|++.|+++.+.
T Consensus       180 ~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          180 ALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            8899999999999999999998765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.36  E-value=0.27  Score=51.56  Aligned_cols=110  Identities=7%  Similarity=-0.089  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC----------------------------------ChhhHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD----------------------------------MATMMEVLST  426 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d----------------------------------dpd~A~aysN  426 (503)
                      ...+...+..+...++.++|.+.|++|+.. |....                                  ......+|..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            667888888889999999999999999987 54210                                  0011134555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHH
Q 010717          427 RASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESME-KYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       427 rAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG-dyeeAle~LqkALkLDPen~eAk  492 (503)
                      .+..+.+.++.++|.+.|++| +..+.....+...|.+.+.++ +++.|...|+++++..|+.++..
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~  357 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK  357 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence            555566678899999999999 433345566766677666666 69999999999999999887653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.68  E-value=0.67  Score=48.90  Aligned_cols=64  Identities=5%  Similarity=-0.097  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQD-DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI  484 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLd-Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL  484 (503)
                      ...|..+-.+|.+.|++++|++.+++..+.. .-+...|..+-.+|...|++++|++.|+++.+.
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            4567777788889999999999999887764 225667777788889999999999999988775

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.55  E-value=0.076  Score=59.69  Aligned_cols=61  Identities=18%  Similarity=0.092  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL  448 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL  448 (503)
                      ..+..++..+..+++|+.|+++-++|+.+      .|.....|+.|+.||.++++|+.||-.++-|-
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~------aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTEL------ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhc------CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            35666788889999999999999999999      67789999999999999999999999998884

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.49  E-value=0.12  Score=51.56  Aligned_cols=64  Identities=14%  Similarity=0.094  Sum_probs=47.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 010717          431 YKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST  494 (503)
Q Consensus       431 ylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~  494 (503)
                      +++.+++++|++.++..++.+|.+.+....+-+.|+..|+|+.|...++.+.+++|+.......
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~   70 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ   70 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            4566777777777777777777777777777777777777777777777777777776544333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.21  E-value=0.44  Score=50.62  Aligned_cols=48  Identities=15%  Similarity=0.003  Sum_probs=29.7

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717          389 VDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV  447 (503)
Q Consensus       389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA  447 (503)
                      ..+...+++++|++++++.           .....|.++|..+++.++++.|++.|.++
T Consensus       660 ~~~l~~~~~~~A~~~~~~~-----------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDE-----------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTC-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ehhhhcCCHHHHHHHHHhh-----------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3445666666666654221           22357777777777777777777777664

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.04  E-value=0.36  Score=48.23  Aligned_cols=62  Identities=13%  Similarity=0.077  Sum_probs=54.6

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717          389 VDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k  456 (503)
                      ..+++.++..+|++.....|+.      .|.++.....+-..++-.|++++|++.++.+.+++|....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKA------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            3567899999999999999876      6777888888889999999999999999999999998754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.93  E-value=0.44  Score=49.99  Aligned_cols=93  Identities=10%  Similarity=-0.192  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ..+........+.++.+.|.+.|.+| .. +     .....+|...+.+.+..+ +.+.|...++++++..|+.+..+..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-----~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~  359 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-E-----GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE  359 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-----CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-----CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence            45666677777788899999999999 32 1     123457776777666666 6999999999999999999888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 010717          461 RALLYESMEKYKLGAEDLRTV  481 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkA  481 (503)
                      .+..+..+++.+.|...|+++
T Consensus       360 yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          360 FFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            888888999999999888776

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.48  E-value=0.33  Score=51.94  Aligned_cols=78  Identities=10%  Similarity=-0.052  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       423 aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++..+|.+......++.|..+|++|+.+.|.....|..+|.++...++.-+|+-+|.++|......+.+...|..+.+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            456678888888888999999999999999999999999999999999999999999999887778888777776654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.55  E-value=0.39  Score=48.98  Aligned_cols=64  Identities=13%  Similarity=0.027  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      ...++..+...+...|++.+|+..+.+++..      +|.+-.+|..+..+|++.|+..+|++.|+++.+
T Consensus       170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          170 KVLAHTAKAEAEIACGRASAVIAELEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445666788889999999999999999988      667778999999999999999999999998865

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.25  E-value=0.66  Score=49.62  Aligned_cols=80  Identities=9%  Similarity=-0.044  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR  461 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl  461 (503)
                      .++..+|+.+.-+..+..|..+|.+|+.+      .|.....|+.+|.++...++.-+|+-+|.++|....-.+.+.-++
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL  226 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence            35677899999999999999999999999      455568999999999999999999999999997765566666666


Q ss_pred             HHHHHH
Q 010717          462 ALLYES  467 (503)
Q Consensus       462 A~Ay~~  467 (503)
                      ...+..
T Consensus       227 ~~~f~~  232 (497)
T 1ya0_A          227 QKALSK  232 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.15  E-value=3.9  Score=42.44  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=56.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHH
Q 010717          425 STRASCYKEVGEYKKAVADCSKVLEQ----DDT--NVSVLVQRALLYESMEKYKLGAEDLRTVLKID---PSNRIARSTI  495 (503)
Q Consensus       425 sNrAlcylrLGdyeeALedaekALkL----dPd--~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD---Pen~eAk~~L  495 (503)
                      ..++..|+..|+|.+|++.+++.++-    |..  -.+.+.....+|..++++.++.+.|.++.+..   +.++.++..+
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            37899999999999999999887763    211  14577778999999999999999999998764   2445555555


Q ss_pred             HHH
Q 010717          496 HRL  498 (503)
Q Consensus       496 a~L  498 (503)
                      ..+
T Consensus       183 ~~~  185 (394)
T 3txn_A          183 DLQ  185 (394)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.71  E-value=0.58  Score=49.67  Aligned_cols=28  Identities=14%  Similarity=-0.010  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAV  408 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKAL  408 (503)
                      ...|..+|..+.+.++++.|+++|.++-
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            5678999999999999999999999864

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.64  E-value=0.26  Score=53.31  Aligned_cols=74  Identities=15%  Similarity=0.099  Sum_probs=60.9

Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          416 DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD-----TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       416 ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP-----d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      +....+.++..+-..|++.+.|++|.....++.-...     .....+|.+|.++....+|.+|.++|..|++..|.+.
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            3456788899999999999999999999999852211     1245677889999999999999999999999988653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.87  E-value=1.7  Score=50.27  Aligned_cols=99  Identities=12%  Similarity=0.028  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----------------HhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILL-----------------EKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS  445 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~-----------------pk~~ddpd~A~aysNrAlcylrLGdyeeALedae  445 (503)
                      ..+.+|.+++..|++++|.++|++|..-+                 +...........|.....++.+.+.++.+++.++
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45789999999999999999998874211                 1111111234567777888888999999999999


Q ss_pred             HHHHcCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717          446 KVLEQDD-TNV----SVLVQRALLYESMEKYKLGAEDLRTV  481 (503)
Q Consensus       446 kALkLdP-d~~----kAlyrlA~Ay~~LGdyeeAle~LqkA  481 (503)
                      .||+... ++.    ..|.++=..+..+++|++|...+...
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            9998754 333    25667778889999999998888654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=89.94  E-value=1.8  Score=40.45  Aligned_cols=81  Identities=10%  Similarity=-0.098  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ...|+.+|..+..+++++-|.++|.++-++              ..+..+|.-.|+.++-.+..+.|.....  .   ..
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------~~L~~Ly~~tg~~e~L~kla~iA~~~g~--~---n~   94 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQHSF--------------DKLSFLYLVTGDVNKLSKMQNIAQTRED--F---GS   94 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------------HHHHHHHHHHTCHHHHHHHHHHHHHTTC--H---HH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------------HHHHHHHHHhCCHHHHHHHHHHHHHCcc--H---HH
Confidence            457888888888888888888888776433              2233444555565554444444443321  1   11


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 010717          461 RALLYESMEKYKLGAEDLRT  480 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~Lqk  480 (503)
                      .-.+++.+|+++++++.|.+
T Consensus        95 af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           95 MLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            12344555666666555544

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=89.06  E-value=5.5  Score=40.20  Aligned_cols=98  Identities=8%  Similarity=-0.043  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCH--HHHHHH----------------
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEY--KKAVAD----------------  443 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdy--eeALed----------------  443 (503)
                      +.++.+...|.++++|++|++++......+-+.+....-+++...+..+|-+.+.-  ++.+.-                
T Consensus        34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~  113 (312)
T 2wpv_A           34 QTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLK  113 (312)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHH
Confidence            45677888888899999999885444333222222222222222233333332211  222222                


Q ss_pred             --HHHHHHc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          444 --CSKVLEQ-------DDTNVSVLVQRALLYESMEKYKLGAEDLR  479 (503)
Q Consensus       444 --aekALkL-------dPd~~kAlyrlA~Ay~~LGdyeeAle~Lq  479 (503)
                        +++||+-       .-.+++.|..+|..|...+++.+|..+|-
T Consensus       114 ~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          114 DVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence              2222211       11367788899999999999999999885

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.86  E-value=15  Score=35.09  Aligned_cols=108  Identities=14%  Similarity=0.025  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHh----------cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVI--LLEK----------SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV  447 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALe--L~pk----------~~ddpd~A~aysNrAlcylrLGdyeeALedaekA  447 (503)
                      .+...+-+..++.+.+||..|+..++..|+  +.+.          .-+..+..-.+..+|.++-+.++-+||+.++...
T Consensus        61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S  140 (242)
T 3kae_A           61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS  140 (242)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence            456677788999999999999999999983  2100          0111233445678899999999999999999876


Q ss_pred             HHcCCCCH------------------------------------------------H----------HHH--HHHHHHHH
Q 010717          448 LEQDDTNV------------------------------------------------S----------VLV--QRALLYES  467 (503)
Q Consensus       448 LkLdPd~~------------------------------------------------k----------Aly--rlA~Ay~~  467 (503)
                      ..+++-.+                                                +          .++  ..+.-|+.
T Consensus       141 f~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~  220 (242)
T 3kae_A          141 FGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFN  220 (242)
T ss_dssp             HHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHH
T ss_pred             cCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence            55432110                                                0          011  13667888


Q ss_pred             cCCHHHHHHHHHHHHHhCCC
Q 010717          468 MEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       468 LGdyeeAle~LqkALkLDPe  487 (503)
                      +|-.++..++|..+-++||.
T Consensus       221 lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          221 LGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT
T ss_pred             cccchhHHHHHHHHHhcCCC
Confidence            99999999999888888885

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=88.18  E-value=5.7  Score=46.56  Aligned_cols=104  Identities=9%  Similarity=-0.080  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-DTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-Pd~~kAl  458 (503)
                      .-..|..+-+.|++.|+.++|.++|.+..+...+ +-.| +...|+-+-..|.+.|++++|++.+++..+.. .-+...|
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3345777888999999999999999776543211 1122 46788889999999999999999999988764 2255666


Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 010717          459 VQRALLYESMEKY-KLGAEDLRTVLKID  485 (503)
Q Consensus       459 yrlA~Ay~~LGdy-eeAle~LqkALkLD  485 (503)
                      ..+-.+|.+.|+. ++|.+.|+++.+..
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            6677788888874 78899999988753

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.66  E-value=6.9  Score=40.00  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcC-------
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSW-AVILLEKSGDMATMMEVLSTRASCYKEVGE--YKKAVADCSKVLEQD-------  451 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeK-ALeL~pk~~ddpd~A~aysNrAlcylrLGd--yeeALedaekALkLd-------  451 (503)
                      +.++.+...|.++++|.+|++++.. |+.+++ .+....-+++...+..+|-+.+-  -++.+.-+-+++.+-       
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~-~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r  114 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILASVSQTLLR-SGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR  114 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH-CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH
Confidence            4567788889999999999997544 444433 22222222233333344433321  112222222222211       


Q ss_pred             ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717          452 ------------------DTNVSVLVQRALLYESMEKYKLGAEDLR  479 (503)
Q Consensus       452 ------------------Pd~~kAlyrlA~Ay~~LGdyeeAle~Lq  479 (503)
                                        -.+++.|..+|..|...++|.+|..+|-
T Consensus       115 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          115 KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence                              2456788889999999999999999883

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=87.21  E-value=22  Score=36.25  Aligned_cols=112  Identities=17%  Similarity=0.044  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHH--HHHHHHHHHHcCCHHHHH-----HHHHHHHH---
Q 010717          382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEV--LSTRASCYKEVGEYKKAV-----ADCSKVLE---  449 (503)
Q Consensus       382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~a--ysNrAlcylrLGdyeeAL-----edaekALk---  449 (503)
                      ......|..++..|++.+|++.|+.+|..++-.  .++.+..++  +..++.-|..-=..|.+.     ++..+.++   
T Consensus       115 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAA  194 (325)
T 3mv2_A          115 NEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAA  194 (325)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            334567999999999999999999999876632  112222222  222222221100001000     11122222   


Q ss_pred             ------cCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          450 ------QDDTNVSVLVQRAL-LYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       450 ------LdPd~~kAlyrlA~-Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                            |.|.+...-++.|. ..++.++|.-|....++.|++.|....+++
T Consensus       195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q  245 (325)
T 3mv2_A          195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ  245 (325)
T ss_dssp             HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred             HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence                  23333333333343 457789999999999999999997655443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.33  E-value=2.1  Score=44.15  Aligned_cols=82  Identities=15%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 010717          417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD---TNVSVLVQRALLYESMEKYKLGAEDLRTVLKID--PSNRIA  491 (503)
Q Consensus       417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdP---d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD--Pen~eA  491 (503)
                      +.....++..+|..|++.|++++|++.|.+++....   .-...++.+..++...+++..+...+.++..+-  ..+.+.
T Consensus       127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~  206 (429)
T 4b4t_R          127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER  206 (429)
T ss_dssp             CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence            334556788999999999999999999999887642   336788899999999999999999999997763  234444


Q ss_pred             HHHHHHH
Q 010717          492 RSTIHRL  498 (503)
Q Consensus       492 k~~La~L  498 (503)
                      +..+..+
T Consensus       207 ~~~lk~~  213 (429)
T 4b4t_R          207 RNRYKTY  213 (429)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=85.05  E-value=2.9  Score=38.79  Aligned_cols=83  Identities=14%  Similarity=0.017  Sum_probs=63.1

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+..+...+.. ...+|.++|.+.|+.++.+ .     ..++.+|...|..-+++|+..+|.+.+.++|.+.|...+. 
T Consensus        59 rYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~-h-----KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-  130 (161)
T 4h7y_A           59 SFARIQVRFAEL-KAIQEPDDARDYFQMARAN-C-----KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-  130 (161)
T ss_dssp             HHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH-C-----TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-
T ss_pred             HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH-h-----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-
Confidence            345555555633 5669999999999999987 1     2348999999999999999999999999999999876543 


Q ss_pred             HHHHHHHHHcC
Q 010717          459 VQRALLYESME  469 (503)
Q Consensus       459 yrlA~Ay~~LG  469 (503)
                      +..|..-+..|
T Consensus       131 le~a~~nl~~~  141 (161)
T 4h7y_A          131 LEIALRNLNLQ  141 (161)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHhhhcC
Confidence            33444444444

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.78  E-value=5.4  Score=43.12  Aligned_cols=77  Identities=9%  Similarity=-0.053  Sum_probs=60.8

Q ss_pred             CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717          376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS-GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN  454 (503)
Q Consensus       376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~-~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~  454 (503)
                      +.+..+..+..+-..|...+.|++|.++..++.  .|.. ......++.++-+|.++.-+++|.+|.+++..|+...|..
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            444567778888899999999999999999985  2221 1233457777889999999999999999999999887643

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=81.59  E-value=6.3  Score=32.79  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK  413 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk  413 (503)
                      .+..+...|..+-..++|++|+.+|.+||+++-.
T Consensus        14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4566778888899999999999999999987553

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=80.71  E-value=9.1  Score=38.96  Aligned_cols=108  Identities=15%  Similarity=0.264  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHH--HHHHHHHH-------HHcCCHHH-HHHHHHHHHH-
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEV--LSTRASCY-------KEVGEYKK-AVADCSKVLE-  449 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~a--ysNrAlcy-------lrLGdyee-ALedaekALk-  449 (503)
                      .....|..++..|++.+|++.|+.+|..++-.  .++.+..++  +..++.-|       +..++..+ ..++..+.++ 
T Consensus       104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL  183 (320)
T 3mkr_B          104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM  183 (320)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence            34577999999999999999999999876532  111111222  21122111       11121100 0122223332 


Q ss_pred             --------cCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717          450 --------QDDTNVSVLVQRAL-LYESMEKYKLGAEDLRTVLKIDPSNRI  490 (503)
Q Consensus       450 --------LdPd~~kAlyrlA~-Ay~~LGdyeeAle~LqkALkLDPen~e  490 (503)
                              |.|.+...-++.|. ..++.++|.-|....++.|++.|....
T Consensus       184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~  233 (320)
T 3mkr_B          184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEV  233 (320)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence                    23434333344443 357789999999999999999886443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.07  E-value=10  Score=39.36  Aligned_cols=76  Identities=9%  Similarity=-0.066  Sum_probs=59.6

Q ss_pred             CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717          375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ  450 (503)
Q Consensus       375 ~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-dpd~A~aysNrAlcylrLGdyeeALedaekALkL  450 (503)
                      .+.....+.+......|+..+||..|..+++++......... .......+...+..+...++|.+|-++|..++..
T Consensus       171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            344456778888999999999999999999998643333322 3345677788899999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	503
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-10
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	4e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-08
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
           A  N     ++ G  A+A    + A+          T  + L+  A+  +E G  ++AV 
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALR------LCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 443 DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
              K LE      +     A + +   K +      +  ++I P+   A S
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD 451
           ++ G   +A++    A   LE   + A      S  AS  ++ G+ ++A+    + +   
Sbjct: 316 REQGNIEEAVRLYRKA---LEVFPEFA---AAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

Query: 452 DTNVSVLVQRALLYESME 469
            T            + M+
Sbjct: 370 PTFADAYSNMGNTLKEMQ 387

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 9/128 (7%)

Query: 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILL---------EKSGDMATMMEVLSTRASCYK 432
           A  K KG    K G+Y  A+      V  L         E     + ++      A CY 
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 433 EVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492
           ++ EY KAV  C K L  D  N   L +R      M +++    D   VL+++P N+ AR
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135

Query: 493 STIHRLTK 500
             I    K
Sbjct: 136 LQIFMCQK 143

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 374 PPPAGVTGAAA--KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCY 431
           PP  G    A   K +  D  KA  Y +AIK+ S A+          +       R+  Y
Sbjct: 1   PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------LNPSNAIYYGNRSLAY 54

Query: 432 KEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
                Y  A+ D ++ +E D   +    +RA    ++ K++    D  TV+K+ P ++ A
Sbjct: 55  LRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 114

Query: 492 RSTIHRLTKMV 502
           +       K+V
Sbjct: 115 KMKYQECNKIV 125

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
           K +G       +Y +A      A   + ++  +A      + RA CY ++ + ++A+ADC
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRA---ITRNPLVA---VYYTNRALCYLKMQQPEQALADC 61

Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491
            + LE D  +V            ME Y     +L+    +    R+ 
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 4e-08
 Identities = 25/118 (21%), Positives = 34/118 (28%), Gaps = 13/118 (11%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442
             K  G D  K   +  A+K    A  L   +    T         + Y E G+Y K   
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQA------AVYFEKGDYNKCRE 59

Query: 443 DCSKVLEQDDTNVSVLVQ-------RALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
            C K +E    N     Q           Y   EKYK         L    +  + + 
Sbjct: 60  LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
           K KG      G   DA++  S A+              + S R++ Y + G+Y+KA  D 
Sbjct: 7   KEKGNKALSVGNIDDALQCYSEAIK------LDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498
            K ++          ++A   E + +++         LK + +N   +  +  +
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMM----------EVLSTRASCYKEV 434
           KN G    K+  +  AIK  +  +  +E S   A               +    +C  ++
Sbjct: 31  KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 90

Query: 435 GEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST 494
            +++ AV  C + LE D +N   L +RA  ++ +++Y     DL+   +I P ++  ++ 
Sbjct: 91  SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 150

Query: 495 IHRLTK 500
           + ++ +
Sbjct: 151 LLKVKQ 156

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM---------ATMMEVLSTRASCYKE 433
             K +G    K G+Y  A+      V  LE              A  +      A C+ +
Sbjct: 15  IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 74

Query: 434 VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493
           +  +  A+  C+K LE D  N   L +R   + ++  ++L   D + VL++ P+N+ A++
Sbjct: 75  LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 134

Query: 494 TIHRLTKMV 502
            +    + +
Sbjct: 135 QLAVCQQRI 143

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM----------ATMMEVLSTRASCYKEV 434
           K +G +  K  +  +AI     A+     + +              +      A+CY + 
Sbjct: 21  KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 80

Query: 435 GEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST 494
            +Y KA+   SKVL+ D  NV  L +  +        +   E+L     ++P+N   R++
Sbjct: 81  KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 140

Query: 495 IHRLTK 500
                 
Sbjct: 141 YELCVN 146

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
           N+GV       +  A+   S    + +          +       Y  +    +A    +
Sbjct: 10  NEGVLAADKKDWKGALDAFS---AVQDPHS------RICFNIGCMYTILKNMTEAEKAFT 60

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
           + + +D        QR +LY   EKY L  +DL+  L     N
Sbjct: 61  RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 396 QYADAIKWLSWAVILLEKSGDMA----------TMMEVLSTRASCYKEVGEYKKAVADCS 445
           +Y  AIK L  A+I L  +  +              EVL   A  Y +  E+KKA    +
Sbjct: 85  KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 144

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKL 473
                        + +A+  E + K KL
Sbjct: 145 LATSMKSEPRHSKIDKAM--ECVWKQKL 170

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 7/72 (9%), Positives = 18/72 (25%), Gaps = 5/72 (6%)

Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----VSVLVQRALLYESMEKYKLGAE 476
           E  + RA      G   +A       LE+         +        +     +      
Sbjct: 13  EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLA 72

Query: 477 DLRTVLKIDPSN 488
            ++   ++   +
Sbjct: 73  LMQQTEQMARQH 84

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 10/57 (17%), Positives = 18/57 (31%)

Query: 427 RASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLK 483
                 + G+   AV      ++QD  ++             E+  L    LR  L+
Sbjct: 25  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
            +G+   + G   +A+     A   +++        E      +   E  +   A++   
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAA---VQQDPKHM---EAWQYLGTTQAENEQELLAISALR 77

Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498
           + LE    N + L+  A+ + +    +   E LR  L+  P+     +     
Sbjct: 78  RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 130

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 9/83 (10%), Positives = 26/83 (31%)

Query: 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAE 476
                 + +   +      + ++AVA   + LE     +       +   ++  ++   E
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261

Query: 477 DLRTVLKIDPSNRIARSTIHRLT 499
                L +   +R  R     ++
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMS 284

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 9/85 (10%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 411 LEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN--VSVLVQRALLYESM 468
                   +     +      +   + +K +    ++L +         +   A+    +
Sbjct: 26  KAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 85

Query: 469 EKYKLGAEDLRTVLKIDPSNRIARS 493
           ++Y+   + +R +L+ +P N  A+ 
Sbjct: 86  KEYEKALKYVRGLLQTEPQNNQAKE 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	503
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.78
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.78
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.77
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.75
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.75
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.53
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.46
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.44
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.39
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.39
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.37
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.21
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.16
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.1
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.1
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.09
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.08
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.07
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.07
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.06
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.01
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.96
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.78
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.74
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.71
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.68
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.68
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.59
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.54
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.48
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.29
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.14
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.11
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.08
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.03
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.01
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.91
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.66
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	86.25

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.3e-19  Score=149.33  Aligned_cols=115  Identities=20%  Similarity=0.258  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|+.+++.|+|++|+.+|+++|++      +|.+..+|.++|.||++++++++|+.+|+++++++|+++.+|+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   75 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKL------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS   75 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHH
Confidence            4677899999999999999999999999998      6778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++|.+|..++++++|+.+|+++++++|+++.+...+.+++.
T Consensus        76 ~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          76 RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-18  Score=150.59  Aligned_cols=117  Identities=24%  Similarity=0.329  Sum_probs=110.6

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      +.+..++.+|+.+++.++|++|+++|++||++      +|....+|.++|.||+.+|++++|+++|+++|+++|++.+++
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~   81 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   81 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHH
Confidence            46788999999999999999999999999999      677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++|.+|..+|+|++|+++|+++++++|.+.++...+.++...
T Consensus        82 ~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          82 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888777543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.78  E-value=2.1e-18  Score=152.03  Aligned_cols=124  Identities=20%  Similarity=0.236  Sum_probs=111.7

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC----------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM----------ATMMEVLSTRASCYKEVGEYKKAVADCSKVL  448 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd----------pd~A~aysNrAlcylrLGdyeeALedaekAL  448 (503)
                      ..+..++..|+.+|+.++|.+|+..|++||++++.....          .....+|.|+|.||++++++++|+++|+++|
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            356778999999999999999999999999876643321          1235688999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          449 EQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       449 kLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      +++|.+.++||++|.+|..+|+|++|+.+|+++++++|+|.++...+..+.+.+
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.9e-18  Score=152.10  Aligned_cols=122  Identities=23%  Similarity=0.338  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD---------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ  450 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d---------dpd~A~aysNrAlcylrLGdyeeALedaekALkL  450 (503)
                      .+..++..|+.+|+.++|++|+++|++||++++....         ......+|.|+|.||+++++|++|+.+|+++|++
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            5778889999999999999999999999998765432         1234567899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          451 DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       451 dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +|+++++++++|.||..+|+|++|+.+|+++++++|+++.+...+..+.+.
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.77  E-value=6.8e-18  Score=150.32  Aligned_cols=123  Identities=29%  Similarity=0.377  Sum_probs=111.2

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD---------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d---------dpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      ..+..++..|+.+|+.|+|.+|+.+|++||.+++....         ......+|.|||.||+++++|++|+.+|++||+
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            35778999999999999999999999999988764322         233567789999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          450 QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       450 LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++|.+.++++++|.+|..+|+|++|+++|+++++++|++.++...+..+...
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988888654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1.1e-17  Score=148.30  Aligned_cols=123  Identities=20%  Similarity=0.334  Sum_probs=111.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC----------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG----------DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE  449 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~----------ddpd~A~aysNrAlcylrLGdyeeALedaekALk  449 (503)
                      .+..++..|+.+++.++|.+|++.|++||++.+...          ..+..+.+|.|||.||+++++|++|+.+|++||+
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            456788899999999999999999999998765311          1356788899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          450 QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       450 LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ++|+++++|+++|.+|+.+++|++|+++|+++++++|++.++...|..|++.+
T Consensus       106 ~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         106 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998887654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.9e-18  Score=151.21  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..++.+|+.+++.|+|++|+++|++||++      +|..+.+|+++|.||+++|+|++|+.+|++||+++|+++++|+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~   76 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHH
Confidence            4778999999999999999999999999999      6678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      ++|.+|+.+++|++|+.+|+++++++|++
T Consensus        77 ~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          77 FLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999998854

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.5e-16  Score=132.02  Aligned_cols=116  Identities=23%  Similarity=0.245  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV----  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~----  455 (503)
                      .+..++++|+.++..++|++|+++|+++|++      +|.+..+|.++|.||.++++|++|+++|+++|+++|.+.    
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            5778999999999999999999999999999      567789999999999999999999999999999987764    


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          456 ---SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       456 ---kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                         ++|+++|.++..++++++|+++|++++.+++. .++...+.++++.+
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l  125 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence               57888899999999999999999999999874 66777777776654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.2e-15  Score=138.51  Aligned_cols=115  Identities=21%  Similarity=0.167  Sum_probs=106.8

Q ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 010717          378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA  457 (503)
                      ...+..++.+|.+|++.|+|++|++.|++||++      +|.++.+|.++|.||.++|++++|+++|+++++++|++..+
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  107 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA  107 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhh
Confidence            357889999999999999999999999999999      67788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      ++++|.+|..+|++++|++.|+++++++|.+......+..+
T Consensus       108 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  148 (259)
T d1xnfa_         108 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  148 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            99999999999999999999999999999998765554433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.9e-15  Score=127.51  Aligned_cols=112  Identities=12%  Similarity=0.081  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCC--HHHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV---GEYKKAVADCSKVLEQDDTN--VSVLV  459 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL---GdyeeALedaekALkLdPd~--~kAly  459 (503)
                      -++.+.++..+++++|.+.|+++|.+      +|....+++|+|.|+++.   +++++|++.|+++++++|.+  ..++|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~   76 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF   76 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence            35678899999999999999999999      677889999999999874   45668999999999998765  45899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      ++|.+|+.+|+|++|+++|+++|+++|++.++...+..+++.+
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.53  E-value=3.2e-14  Score=118.87  Aligned_cols=94  Identities=14%  Similarity=0.035  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA  462 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA  462 (503)
                      .++.+|..+++.|++.+|+..|+++|++      +|....+|.++|.|+.+++++++|+.++++|++++|++..+++.+|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc------ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHH
Confidence            4578899999999999999999999998      6678899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 010717          463 LLYESMEKYKLGAEDLRTVL  482 (503)
Q Consensus       463 ~Ay~~LGdyeeAle~LqkAL  482 (503)
                      .+|..+|++++|+++|++.|
T Consensus        92 ~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          92 VSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999986

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.53  E-value=8.2e-15  Score=128.35  Aligned_cols=106  Identities=14%  Similarity=0.119  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----
Q 010717          383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM------ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD----  452 (503)
Q Consensus       383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd------pd~A~aysNrAlcylrLGdyeeALedaekALkLdP----  452 (503)
                      .++..|..++..|+|++|++.|++||++.++.++.      ...+.+|.++|.||..+|+|++|+++|+++|++.+    
T Consensus        11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~   90 (156)
T d2hr2a1          11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   90 (156)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc
Confidence            34445899999999999999999999998876542      23578899999999999999999999999998753    


Q ss_pred             -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          453 -------TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       453 -------d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                             .+..+++++|.+|..+|++++|+++|++++++.|+.
T Consensus        91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                   235689999999999999999999999999997744

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.1e-14  Score=128.91  Aligned_cols=117  Identities=21%  Similarity=0.127  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|.++...+++.+|++.|++++..      .+....++..++.++.++|++++|++.++++++++|+++.+++
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  343 (388)
T d1w3ba_         270 FPDAYCNLANALKEKGSVAEAEDCYNTALRL------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS  343 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc------CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3556777777777777777777777777766      4556788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV  502 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL  502 (503)
                      .+|.+|..+|++++|+++|+++++++|++.++...|..+...+
T Consensus       344 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999998886654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.9e-14  Score=132.61  Aligned_cols=107  Identities=14%  Similarity=0.134  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+..+|.+++..+++++|+++|++++.+      .|....+|.++|.||.++|++++|++.|+++++++|+++.+++
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  244 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY  244 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhccccccccc------ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence            4678889999999999999999999999988      5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR  492 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk  492 (503)
                      .+|.+|..+|++++|++.|+++|+++|++..+.
T Consensus       245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            999999999999999999999999999886643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-13  Score=123.28  Aligned_cols=115  Identities=18%  Similarity=0.178  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .+..++++|.+++..|+|++|+++|++||++      +|..+.+|+++|.||.++|+|++|+++|++++++.+.+     
T Consensus        35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~  108 (192)
T d1hh8a_          35 HSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY  108 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred             CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHH
Confidence            4678999999999999999999999999999      67789999999999999999999999999999875432     


Q ss_pred             -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHh
Q 010717          455 -----------VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS--NRIARSTIHRLTK  500 (503)
Q Consensus       455 -----------~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe--n~eAk~~La~Lqk  500 (503)
                                 .++++++|.+|..++++++|++.|++++++.|+  +..+...+..+++
T Consensus       109 ~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~  167 (192)
T d1hh8a_         109 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK  167 (192)
T ss_dssp             GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred             HHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Confidence                       478999999999999999999999999999886  3455556655544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-13  Score=124.64  Aligned_cols=99  Identities=20%  Similarity=0.245  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      +..++++|..++..++|++|++.|+++.         +..+.+|+|+|.||+.+|+|++|+++|++||+++|+++.+|++
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i~---------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~   75 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAVQ---------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ   75 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS---------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHH
Confidence            4467789999999999999999998642         2346789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          461 RALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                      +|.+|..+++|++|+++|+++++..+.+
T Consensus        76 ~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          76 RGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            9999999999999999999999987654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.46  E-value=1.4e-13  Score=120.41  Aligned_cols=107  Identities=10%  Similarity=0.054  Sum_probs=95.9

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          389 VDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV----------GEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL----------GdyeeALedaekALkLdPd~~kAl  458 (503)
                      ..+.+.+.|++|++.|++|+++      +|.++.++.++|.|++.+          +++++|++.|+++|+++|++..+|
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~   78 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKS------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAV   78 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhh------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            3456777899999999999999      778899999999999854          556899999999999999999999


Q ss_pred             HHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          459 VQRALLYESMEK-----------YKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       459 yrlA~Ay~~LGd-----------yeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++|.+|..+++           |++|+++|+++++++|++..++..|..+.+.
T Consensus        79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            999999988764           7999999999999999999999999887654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.1e-13  Score=122.47  Aligned_cols=109  Identities=11%  Similarity=0.044  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717          385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL  464 (503)
Q Consensus       385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A  464 (503)
                      ..+|..+++.|+|++|++.|+++++.      +|....++..+|.||+++|++++|++.|+++++++|+++.+++.+|.+
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~   76 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQ------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV   76 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45789999999999999999999988      566788999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          465 YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       465 y~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      |..+|++++|++.++++++.++........+..+.
T Consensus        77 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  111 (388)
T d1w3ba_          77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL  111 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhhhccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999877665555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.3e-13  Score=128.90  Aligned_cols=117  Identities=17%  Similarity=0.093  Sum_probs=97.2

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHH
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDDTNVSV  457 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdPd~~kA  457 (503)
                      ..++++..+|.++.+.+.+++|+++|++||++      +|...++|.+|+.|+..++ ++++|+.+++++|+++|++..+
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a  114 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  114 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhH
Confidence            35677777888888888888888888888888      6777888888888888876 4888888888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      |+++|.++..++++++|++.|+++++++|++..+...+..+...
T Consensus       115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~  158 (315)
T d2h6fa1         115 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  158 (315)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH
Confidence            88888888888888888888888888888888887777666544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.9e-12  Score=105.51  Aligned_cols=90  Identities=18%  Similarity=0.141  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      .++.++.+|.++++.|+|.+|+++|++|+++.+.... ....+.+|.++|.||.++|++++|+++|+++|+++|++.+++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            3677899999999999999999999999999876432 445688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 010717          459 VQRALLYESME  469 (503)
Q Consensus       459 yrlA~Ay~~LG  469 (503)
                      ++++.+...+.
T Consensus        84 ~Nl~~~~~~l~   94 (95)
T d1tjca_          84 GNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99987766553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-12  Score=126.53  Aligned_cols=113  Identities=11%  Similarity=0.071  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAG-QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqG-DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ...++..+|.++...+ ++++|+++|++++++      +|....+|.+|+.|+.++|++++|+++++++++++|++..+|
T Consensus        76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~  149 (315)
T d2h6fa1          76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  149 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHH
Confidence            5889999999999876 599999999999999      677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL  498 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L  498 (503)
                      +++|.++..++++++|+++|+++|+++|.+..+...+..+
T Consensus       150 ~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~  189 (315)
T d2h6fa1         150 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  189 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence            9999999999999999999999999999998876665554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=2.1e-12  Score=116.83  Aligned_cols=104  Identities=15%  Similarity=0.125  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010717          396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGA  475 (503)
Q Consensus       396 DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAl  475 (503)
                      +++.|+..+++++..  ....++..+.+|+++|.||.++|++++|+++|+++|+++|+++.+|+++|.+|..+|++++|+
T Consensus        14 ~~e~al~~~~e~l~~--~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            455677777777643  122356688999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          476 EDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       476 e~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++|+++++++|++..+...+..+...
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            99999999999999988888776543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.1e-12  Score=117.92  Aligned_cols=100  Identities=19%  Similarity=0.197  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717          384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL  463 (503)
Q Consensus       384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~  463 (503)
                      .+.+|..+++.|+|++|+++|+++|++      +|....+|.++|.||..+|++++|+..|+++++++|++..+++.+|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   95 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV   95 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccc
Confidence            568999999999999999999999988      66778999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          464 LYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       464 Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      +|..++++++|++.|+++++++|...
T Consensus        96 ~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          96 SFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             cccccccccccccchhhHHHhccchH
Confidence            99999999999999999999998753

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.4e-11  Score=97.17  Aligned_cols=82  Identities=16%  Similarity=0.097  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-------VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~-------~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~  493 (503)
                      +.-++++|.++++.|+|++|+.++++|+++.|.+       ..+++++|.+|..+|++++|++.|+++|+++|++.++..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4567899999999999999999999999986433       679999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 010717          494 TIHRLTKMV  502 (503)
Q Consensus       494 ~La~LqklL  502 (503)
                      .+..+++++
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=9.1e-11  Score=102.41  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      +..+.+.|.+|++.|+|++|+..|+++|+++|.++.+|+++|.||..+++|++|+.+|+++++++|++..+...+..+..
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999888888765


Q ss_pred             hh
Q 010717          501 MV  502 (503)
Q Consensus       501 lL  502 (503)
                      .+
T Consensus        84 ~l   85 (201)
T d2c2la1          84 EM   85 (201)
T ss_dssp             HT
T ss_pred             HC
Confidence            54

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=2e-10  Score=100.85  Aligned_cols=90  Identities=18%  Similarity=0.162  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      .+..+.++|.++++.++|++|+..|++||++      +|..+.+|+++|.||++++++++|+++|++|++++|++..++.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~  149 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA  149 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhh------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5667888999999999999999999999988      6778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHH
Q 010717          460 QRALLYESMEKYKLGA  475 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAl  475 (503)
                      .+..++..++++.++.
T Consensus       150 ~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         150 ELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999988887776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.9e-10  Score=97.74  Aligned_cols=81  Identities=21%  Similarity=0.219  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK  500 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk  500 (503)
                      ++.+..+|.+|++.|+|++|+.+|+++|+++|++..+|+++|.+|+.++++++|+++|+++|+++|++..+...+..+..
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45566789999999999999999999999999999999999999999999999999999999999999999888877755


Q ss_pred             h
Q 010717          501 M  501 (503)
Q Consensus       501 l  501 (503)
                      .
T Consensus        90 ~   90 (159)
T d1a17a_          90 A   90 (159)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.09  E-value=4.1e-10  Score=93.40  Aligned_cols=80  Identities=13%  Similarity=0.069  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ..++++|.++++.|++++|+..++++++++|+++.+|+.+|.+|..++++++|+.+|+++++++|++.++...|..+...
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999888877554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.1e-10  Score=92.87  Aligned_cols=81  Identities=17%  Similarity=0.195  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      .-+.+.|..++..|+|++|+..|+++|+++|.++.+|+.+|.+|..++++++|++.|+++++++|++..+...+..+...
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999888887654


Q ss_pred             h
Q 010717          502 V  502 (503)
Q Consensus       502 L  502 (503)
                      +
T Consensus        84 ~   84 (117)
T d1elwa_          84 L   84 (117)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=7.1e-10  Score=100.44  Aligned_cols=118  Identities=20%  Similarity=0.198  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-----C-----------ChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-----D-----------MATMMEVLSTRASCYKEVGEYKKAVAD  443 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-----d-----------dpd~A~aysNrAlcylrLGdyeeALed  443 (503)
                      ....++..|..+...|++++|++.|.+|+++.+...     .           .+....++.+++.+++++|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            567889999999999999999999999998733110     0           134557889999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHH
Q 010717          444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV-------LKIDPSNRIARSTIHRL  498 (503)
Q Consensus       444 aekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkA-------LkLDPen~eAk~~La~L  498 (503)
                      |+++++++|.+..+|+.++.+|..+|++++|++.|+++       |-++|. .+......++
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~i  150 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERI  150 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHH
Confidence            99999999999999999999999999999999999998       446674 4444444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.07  E-value=6.8e-10  Score=97.78  Aligned_cols=98  Identities=20%  Similarity=0.137  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+.++|.++++.++|.+|+++|+++|++      +|....+|+++|.||..+|+|++|+++|+++++++|++..++.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~  136 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL  136 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhc------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4556778999999999999999999999999      6778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHH-HHHHHHHHHH
Q 010717          460 QRALLYESMEKYKL-GAEDLRTVLK  483 (503)
Q Consensus       460 rlA~Ay~~LGdyee-Ale~LqkALk  483 (503)
                      .++.+...++++.+ ....|.++++
T Consensus       137 ~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         137 QIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            99999888776654 3444444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=3.4e-10  Score=106.93  Aligned_cols=108  Identities=10%  Similarity=0.037  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      -++.|...|+.|...++|++|+++|++|+++..+..+.+..+.+|.++|.||.+++++++|++.+++++++.+..     
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            356788889999999999999999999999988887777888999999999999999999999999999986544     


Q ss_pred             -HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 010717          455 -VSVLVQRALLYES-MEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       455 -~kAlyrlA~Ay~~-LGdyeeAle~LqkALkLDPe  487 (503)
                       ..+++++|.+|.. ++++++|++.|++++++.+.
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence             5688889998865 69999999999999988653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.8e-10  Score=97.95  Aligned_cols=90  Identities=22%  Similarity=0.147  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ..++.++|.+|++.++|++|+.+|++||++      +|....+|+.+|.||+.+|+|++|+.+|+++++++|++..+...
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~  135 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALEL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ  135 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhc------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            456778999999999999999999999999      67788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHH
Q 010717          461 RALLYESMEKYKLGAE  476 (503)
Q Consensus       461 lA~Ay~~LGdyeeAle  476 (503)
                      ++.++..++++.+...
T Consensus       136 l~~~~~~~~~~~~~e~  151 (170)
T d1p5qa1         136 LAVCQQRIRRQLAREK  151 (170)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999988877766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.01  E-value=7.4e-10  Score=96.47  Aligned_cols=84  Identities=14%  Similarity=0.086  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ..++.++|.+|++.++|.+|++.|++||++      +|....+|+++|.||..+|++++|+.+|+++++++|++..+...
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~  140 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS  140 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccc------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            457788999999999999999999999999      67788999999999999999999999999999999999999998


Q ss_pred             HHHHHHHcCC
Q 010717          461 RALLYESMEK  470 (503)
Q Consensus       461 lA~Ay~~LGd  470 (503)
                      +..+...+++
T Consensus       141 l~~~~~kl~~  150 (153)
T d2fbna1         141 YELCVNKLKE  150 (153)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888776654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.4e-10  Score=95.16  Aligned_cols=77  Identities=17%  Similarity=0.171  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717          421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR  497 (503)
Q Consensus       421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~  497 (503)
                      +..+-++|.+|++.++|++|+++|+++|+++|++..+++++|.||..+++|++|+++|+++++++|.+......+.+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~   80 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999988655444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.2e-10  Score=114.17  Aligned_cols=114  Identities=11%  Similarity=-0.022  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+..+|..+.+.+++.+|++.|.+++.+.        ...++.++|.++..+++|++|+.+|++|++++|++..+|+
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~  190 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYN  190 (497)
T ss_dssp             ------------------------CCHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHH
Confidence            45567788899999999999999999998773        2468889999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ++|.+|...+++.+|+.+|.++|.++|....+...|.++.+.
T Consensus       191 ~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         191 QLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998877543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=2.5e-09  Score=100.88  Aligned_cols=110  Identities=15%  Similarity=0.110  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE-VGEYKKAVADCSKVLEQDDT-----  453 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr-LGdyeeALedaekALkLdPd-----  453 (503)
                      .+..+.++|.+|.+.+++++|+++|++++++.++.+.......++.+++.+|.. ++++++|++.|++++++.+.     
T Consensus        76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~  155 (290)
T d1qqea_          76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            567889999999999999999999999999988877666778889999998866 69999999999999987432     


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          454 -NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       454 -~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                       ...+++++|.+|..+|+|++|++.|++++++.+.+.
T Consensus       156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence             245788899999999999999999999999988764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.3e-09  Score=90.43  Aligned_cols=86  Identities=13%  Similarity=0.025  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717          380 TGAAAKNKGVDNQKAG---QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       380 ~A~alk~lGn~~fkqG---DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k  456 (503)
                      .+.+++++|.++++.+   ++.+|++.|+++++..+    .+....+|+++|.||.++|+|++|+++|+++|+++|++.+
T Consensus        32 ~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~----~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~  107 (122)
T d1nzna_          32 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS----KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  107 (122)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC----CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence            5789999999998744   56679999999986522    2445679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 010717          457 VLVQRALLYESME  469 (503)
Q Consensus       457 AlyrlA~Ay~~LG  469 (503)
                      ++..+..+...++
T Consensus       108 A~~l~~~I~~~~~  120 (122)
T d1nzna_         108 AKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999888876653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2.8e-08  Score=89.45  Aligned_cols=106  Identities=10%  Similarity=0.027  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-----  454 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-----  454 (503)
                      .++....++.+++..|++++|+++|++|+++.+... ......++..+|.||..+|++++|++.+++++++.+..     
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~-~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            456667789999999999999999999998854321 23456789999999999999999999999999875432     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717          455 -VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP  486 (503)
Q Consensus       455 -~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP  486 (503)
                       ..+++.++.+|...+++.+|++.+.+++++.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence             45788899999999999999999999998653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=2.5e-08  Score=94.48  Aligned_cols=107  Identities=12%  Similarity=0.095  Sum_probs=93.4

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHH-HHHHHHH
Q 010717          389 VDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE--YKKAVADCSKVLEQDDTNVSVL-VQRALLY  465 (503)
Q Consensus       389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd--yeeALedaekALkLdPd~~kAl-yrlA~Ay  465 (503)
                      ..+...+++.+|+.+|+++++.      +|....+|..++.++..+++  +++|+..++++++++|.+..++ +.++.++
T Consensus        81 ~~~~~~~~~~~al~~~~~~l~~------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~  154 (334)
T d1dcea1          81 SPEESAALVKAELGFLESCLRV------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA  154 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHh------CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHH
Confidence            3345556689999999999988      66778999999999988775  8999999999999999999886 4678999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          466 ESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       466 ~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      ...+++++|++.++++++++|.+..+...+..+...
T Consensus       155 ~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         155 QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998888877554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.4e-07  Score=84.74  Aligned_cols=110  Identities=11%  Similarity=0.020  Sum_probs=96.6

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 010717          379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-----  453 (503)
Q Consensus       379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd-----  453 (503)
                      ..+.++..+|.+++..|++++|+++|++++++.+..++......++.+++.++...+++.+|+..+.+++.+.+.     
T Consensus        49 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~  128 (366)
T d1hz4a_          49 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ  128 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccch
Confidence            356678889999999999999999999999998887777778889999999999999999999999999876421     


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          454 ---NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       454 ---~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                         ....++.+|.++..++++++|...+++++...+..
T Consensus       129 ~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_         129 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence               23467788999999999999999999999988754

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.68  E-value=2.3e-08  Score=86.70  Aligned_cols=89  Identities=10%  Similarity=0.029  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC-----------HH
Q 010717          380 TGAAAKNKGVDNQK----------AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE-----------YK  438 (503)
Q Consensus       380 ~A~alk~lGn~~fk----------qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd-----------ye  438 (503)
                      .+.++..+|.+++.          .+++++|++.|++||++      +|.+..+|+++|.+|..+++           |+
T Consensus        30 ~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~  103 (145)
T d1zu2a1          30 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD  103 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHH
Confidence            58899999999885          45568999999999999      67788999999999988764           79


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 010717          439 KAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLG  474 (503)
Q Consensus       439 eALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeA  474 (503)
                      +|+++|+++|+++|++..++..++.++...+.+.++
T Consensus       104 ~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         104 LATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888888886555444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.59  E-value=1.1e-07  Score=91.01  Aligned_cols=95  Identities=13%  Similarity=0.029  Sum_probs=75.2

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-------
Q 010717          388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ-------  460 (503)
Q Consensus       388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr-------  460 (503)
                      +..++++|++++|++.|+++|++      +|.+..++.+++.+|+..|++++|++.|+++++++|++..+++.       
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKA------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHT------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            45678889999999999999988      67788999999999999999999999999999988877654443       


Q ss_pred             ----------------------------HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717          461 ----------------------------RALLYESMEKYKLGAEDLRTVLKIDPSN  488 (503)
Q Consensus       461 ----------------------------lA~Ay~~LGdyeeAle~LqkALkLDPen  488 (503)
                                                  ++.++...|++++|++.+++++++.|..
T Consensus        77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                                        4555666666777777777777766654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=5.5e-07  Score=84.98  Aligned_cols=92  Identities=11%  Similarity=0.064  Sum_probs=81.3

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717          396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE----------YKKAVADCSKVLEQDDTNVSVLVQRALLY  465 (503)
Q Consensus       396 DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd----------yeeALedaekALkLdPd~~kAlyrlA~Ay  465 (503)
                      .+++|+++|+++|++      +|++.++|..|..++..+++          +++|+.+++++++.+|++..+++.++.++
T Consensus        44 ~~~~al~~~~~~l~~------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~  117 (334)
T d1dcea1          44 LDESVLELTSQILGA------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (334)
T ss_dssp             CSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHH
Confidence            358999999999998      67788898888877665544          89999999999999999999999999999


Q ss_pred             HHcCC--HHHHHHHHHHHHHhCCCCHHHHH
Q 010717          466 ESMEK--YKLGAEDLRTVLKIDPSNRIARS  493 (503)
Q Consensus       466 ~~LGd--yeeAle~LqkALkLDPen~eAk~  493 (503)
                      ..+++  +++|+..++++++++|.+..+..
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~  147 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADERNFHCWD  147 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHhhCchhhhhhh
Confidence            98875  89999999999999999977654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=9.5e-07  Score=76.77  Aligned_cols=82  Identities=7%  Similarity=0.082  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717          421 MEVLSTRASCYKEVGE---YKKAVADCSKVLEQDDTN-VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH  496 (503)
Q Consensus       421 A~aysNrAlcylrLGd---yeeALedaekALkLdPd~-~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La  496 (503)
                      ....++.|.|+.+-.+   .++++..++.+++.+|.. .+++|.+|.+|+.+|+|++|+++++++|+++|+|..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            5678888999987644   579999999999999876 479999999999999999999999999999999999988888


Q ss_pred             HHHhhh
Q 010717          497 RLTKMV  502 (503)
Q Consensus       497 ~LqklL  502 (503)
                      .+++.+
T Consensus       115 ~Ie~~~  120 (124)
T d2pqrb1         115 MVEDKI  120 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.48  E-value=3e-07  Score=79.32  Aligned_cols=74  Identities=14%  Similarity=0.161  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-----MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT  453 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-----dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd  453 (503)
                      .+.++.++|.+|.+.|+|++|++.|+++|++.++...     .+....+|+++|.||..+|++++|+++|++++++.|+
T Consensus        54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          54 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4678899999999999999999999999999876433     2345668999999999999999999999999998643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.2e-06  Score=89.24  Aligned_cols=83  Identities=8%  Similarity=-0.061  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ  460 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr  460 (503)
                      ..++..+|+++..+++|++|+.+|++|+++      .|+...+|+++|.++...|++.+|+.+|.+||.++|..+.++.+
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~n  225 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN  225 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            457888999999999999999999999999      66778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 010717          461 RALLYESME  469 (503)
Q Consensus       461 lA~Ay~~LG  469 (503)
                      ++.++....
T Consensus       226 L~~~~~~~~  234 (497)
T d1ya0a1         226 LQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999887654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.29  E-value=6.5e-06  Score=74.66  Aligned_cols=97  Identities=14%  Similarity=0.046  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 010717          381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQDDTNVS  456 (503)
Q Consensus       381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLdPd~~k  456 (503)
                      +.+++.+|..++.++||.+|+++|++|.++        .+..++.++|.+|+.    ..++.+|+.+++++....  ++.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~   71 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN   71 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccc
Confidence            568999999999999999999999999865        356889999999998    779999999999988765  788


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 010717          457 VLVQRALLYES----MEKYKLGAEDLRTVLKIDPS  487 (503)
Q Consensus       457 AlyrlA~Ay~~----LGdyeeAle~LqkALkLDPe  487 (503)
                      +++.++.++..    ..++++|+..|+++.+..+.
T Consensus        72 a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          72 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             hhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            99999988876    56889999999999887543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.14  E-value=3.1e-06  Score=80.70  Aligned_cols=71  Identities=14%  Similarity=0.115  Sum_probs=65.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          429 SCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       429 lcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      .-.++.|++++|++.++++++++|++..+++.++.+|+..|++++|++.|+++++++|++..+...+..+.
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999988877776553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.11  E-value=1.1e-05  Score=73.10  Aligned_cols=110  Identities=16%  Similarity=0.102  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 010717          380 TGAAAKNKGVDNQK----AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQD  451 (503)
Q Consensus       380 ~A~alk~lGn~~fk----qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLd  451 (503)
                      ....+..+|..+..    ..+...++.+++++.+.        .+..+++++|.+|+.    ..++++|+.+|+++.++.
T Consensus       141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--------g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g  212 (265)
T d1ouva_         141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  212 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccchhhhhhhhhccCCCcccccccchhhhhccccc--------cccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence            34566778888876    46778888888888754        346889999999988    789999999999999984


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          452 DTNVSVLVQRALLYES----MEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       452 Pd~~kAlyrlA~Ay~~----LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                        ++.+++++|.+|+.    .+++++|+++|+++.++.  +..+...|.+|...
T Consensus       213 --~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~l~~~  262 (265)
T d1ouva_         213 --NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQLKIK  262 (265)
T ss_dssp             --CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHTCCCC
T ss_pred             --CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHHHHHH
Confidence              79999999999986    458999999999999886  45667777766543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1.8e-05  Score=74.32  Aligned_cols=115  Identities=10%  Similarity=-0.097  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV  459 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly  459 (503)
                      ....+...+..+.+.+++++|...|+++|++.+.     +...+|..++.+..+.+++++|.+.+++++++.|.....++
T Consensus        98 ~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~-----~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~  172 (308)
T d2onda1          98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  172 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Confidence            3456777788888999999999999999865221     23456778888888888999999999999988888888888


Q ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          460 QRALLYES-MEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       460 rlA~Ay~~-LGdyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ..+..... .++++.|...|+++++..|.+..+......+.
T Consensus       173 ~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         173 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            87776544 57888888888888888888877666665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=1.7e-05  Score=70.89  Aligned_cols=83  Identities=11%  Similarity=0.001  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHcCCHHHHHH
Q 010717          419 TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN----------------------VSVLVQRALLYESMEKYKLGAE  476 (503)
Q Consensus       419 d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~----------------------~kAlyrlA~Ay~~LGdyeeAle  476 (503)
                      ...+.+.++|..+...|++++|++.|+++|.+.+..                      ..++..++.++..+|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            456788899999999999999999999999986432                      2578889999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717          477 DLRTVLKIDPSNRIARSTIHRLTKM  501 (503)
Q Consensus       477 ~LqkALkLDPen~eAk~~La~Lqkl  501 (503)
                      +++++++++|.+..+...+.++...
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~  113 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYL  113 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHH
Confidence            9999999999999988888776543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.4e-05  Score=75.02  Aligned_cols=104  Identities=10%  Similarity=-0.158  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE-VGEYKKAVADCSKVLEQDDTNVSVL  458 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr-LGdyeeALedaekALkLdPd~~kAl  458 (503)
                      ....+...+....+.++++.|+++|.+|+++      .+....+|...+..... .++.+.|...++++++..|++...+
T Consensus       133 ~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~------~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w  206 (308)
T d2onda1         133 PTLVYIQYMKFARRAEGIKSGRMIFKKARED------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV  206 (308)
T ss_dssp             THHHHHHHHHHHHHHHCHHHHHHHHHHHHTS------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHH
Confidence            3446778888899999999999999999977      33445677777776544 6899999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717          459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNR  489 (503)
Q Consensus       459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~  489 (503)
                      ...+..+...|++++|...|+++++..|.++
T Consensus       207 ~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999877553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.93  E-value=4.5e-05  Score=63.88  Aligned_cols=83  Identities=12%  Similarity=0.044  Sum_probs=72.1

Q ss_pred             HhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q 010717          393 KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYES-  467 (503)
Q Consensus       393 kqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~-  467 (503)
                      ...++++|+++|+++.+.        ....+++++|.+|+.    ..++++|+++|+++.++  .++.+++++|.+|.. 
T Consensus        35 ~~~~~~~a~~~~~~aa~~--------g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G  104 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  104 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             cccCHHHHHHHHhhhhcc--------cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcC
Confidence            457899999999999865        346788999999987    67799999999999986  479999999999998 


Q ss_pred             ---cCCHHHHHHHHHHHHHhC
Q 010717          468 ---MEKYKLGAEDLRTVLKID  485 (503)
Q Consensus       468 ---LGdyeeAle~LqkALkLD  485 (503)
                         .+++++|+++|+++.++.
T Consensus       105 ~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         105 KGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT
T ss_pred             CccCCCHHHHHHHHHHHHHCC
Confidence               578999999999998875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=6.2e-05  Score=65.08  Aligned_cols=83  Identities=17%  Similarity=0.069  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717          380 TGAAAKNKGVDNQKAGQ---YADAIKWLSWAVILLEKSGDMA-TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV  455 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGD---Y~eAIk~YeKALeL~pk~~ddp-d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~  455 (503)
                      ..+.-++.|.++.+..+   ..+||.+++++++.      ++ +...+++++|.+|+++|+|++|+++++++|+++|++.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            46678888888887654   56899999998865      33 3458999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 010717          456 SVLVQRALLYESM  468 (503)
Q Consensus       456 kAlyrlA~Ay~~L  468 (503)
                      ++...+-.+...+
T Consensus       108 qA~~L~~~Ie~~~  120 (124)
T d2pqrb1         108 QVGALKSMVEDKI  120 (124)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9987776665443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.66  E-value=9.7e-05  Score=61.78  Aligned_cols=92  Identities=14%  Similarity=-0.004  Sum_probs=72.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cC
Q 010717          394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYES----ME  469 (503)
Q Consensus       394 qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~----LG  469 (503)
                      .+|+++|+++|++|.++        .+..++.+++.  ....++++|+++++++.+.  .++.+++.+|.+|..    ..
T Consensus         6 ~kd~~~A~~~~~kaa~~--------g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~   73 (133)
T d1klxa_           6 KKDLKKAIQYYVKACEL--------NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK   73 (133)
T ss_dssp             HHHHHHHHHHHHHHHHT--------TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC
T ss_pred             ccCHHHHHHHHHHHHHC--------CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccch
Confidence            45899999999999976        12345555553  4567899999999999886  589999999999987    57


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717          470 KYKLGAEDLRTVLKIDPSNRIARSTIHRLT  499 (503)
Q Consensus       470 dyeeAle~LqkALkLDPen~eAk~~La~Lq  499 (503)
                      ++++|+++|+++.++  .++.+...|..+.
T Consensus        74 d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y  101 (133)
T d1klxa_          74 DLRKAAQYYSKACGL--NDQDGCLILGYKQ  101 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhhhcc--CcchHHHHHHHHH
Confidence            899999999999886  4566666666553

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.25  E-value=1.5  Score=34.59  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717          380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE  412 (503)
Q Consensus       380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p  412 (503)
                      .+..+...+..+-..++|++|+.+|.+||+++-
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   46 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            466778889999999999999999999998654