Citrus Sinensis ID: 010721
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 503 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WVE9 | 524 | Probable plastidic glucos | yes | no | 0.870 | 0.835 | 0.730 | 0.0 | |
| Q9FYG3 | 493 | Probable plastidic glucos | no | no | 0.902 | 0.920 | 0.415 | 2e-95 | |
| Q56ZZ7 | 546 | Plastidic glucose transpo | no | no | 0.819 | 0.754 | 0.400 | 4e-93 | |
| Q2V4B9 | 495 | Probable plastidic glucos | no | no | 0.874 | 0.888 | 0.413 | 3e-91 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.795 | 0.875 | 0.314 | 7e-46 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.781 | 0.852 | 0.309 | 1e-45 | |
| O34718 | 473 | Major myo-inositol transp | no | no | 0.823 | 0.875 | 0.281 | 1e-40 | |
| Q8VZ80 | 539 | Polyol transporter 5 OS=A | no | no | 0.797 | 0.743 | 0.281 | 4e-39 | |
| P54723 | 482 | Putative metabolite trans | no | no | 0.791 | 0.825 | 0.290 | 7e-39 | |
| P94493 | 471 | Putative metabolite trans | no | no | 0.811 | 0.866 | 0.290 | 1e-38 |
| >sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/467 (73%), Positives = 383/467 (82%), Gaps = 29/467 (6%)
Query: 60 QKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGF 119
+K D ++ +S + DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGF
Sbjct: 54 KKPDDDHEISPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGF 113
Query: 120 EGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDE 179
EGN ILEGLVVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE
Sbjct: 114 EGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDE 173
Query: 180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239
+L GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDD
Sbjct: 174 ILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDD 233
Query: 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE 299
PHWWRTMLY+AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+
Sbjct: 234 PHWWRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVED 293
Query: 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIG----------------------------- 330
FQ V+K GS+L+S+W ELL++PHSRVAFIG
Sbjct: 294 FQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGIT 353
Query: 331 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 390
GA ASL VGVTNFAGALCASYL+DK+GR+KLLIGSYLGMA+SM L+V A PLDED S
Sbjct: 354 SGAQASLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLS 413
Query: 391 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 450
+LSILGTL YIF+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWV NFLVGLFFLD
Sbjct: 414 QSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLD 473
Query: 451 LVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 497
LVE +GV VYA FG VSLL+A F++ F VETKGRSLEEIE+SLN+
Sbjct: 474 LVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLNSR 520
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 203/488 (41%), Positives = 294/488 (60%), Gaps = 34/488 (6%)
Query: 40 STKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAE-EGFDLGWLPAFPHVLIASMSNFL 98
S+ +K +++ P + +D LL D E E + W + PHVL+A++S+FL
Sbjct: 9 SSMYKRTSSRDYSPMI----DVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATISSFL 64
Query: 99 FGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ 158
FGYH+GV+N P+ SI+ +LGF G+ + EGLVVS+ + GAF+GS+ SG +AD G RR FQ
Sbjct: 65 FGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQ 124
Query: 159 IDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC 218
I +P+ILGA +S ++SL ML GRFLVG G+G+ + +Y++EV+P RG+ G+
Sbjct: 125 ICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFI 184
Query: 219 QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLN 278
Q+ TCLG++ +LF+GIP + WWR +++++P +LALGM ESP+WL K G +
Sbjct: 185 QIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQGKIA 244
Query: 279 DAKAVIANLWGESEINKAIEE-FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGD------ 331
+A+A L G S + A+ E ++L + K SELL HSRV FIG
Sbjct: 245 EAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTLFALQ 304
Query: 332 ----------------------GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG 369
L ++ VGV+N G++ A LMDK GR+ LL+ S++G
Sbjct: 305 QLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLWSFIG 364
Query: 370 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKI 429
MA +M L VGATS L + LS+ GTL ++ TFA+GAGPV GL++PE+ +R R K
Sbjct: 365 MAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRIRAKA 424
Query: 430 MGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEE 489
M F SVHWV NF VGL FL L+E G +Y+ F L++ +F ++ETKG++L+E
Sbjct: 425 MAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGKTLQE 484
Query: 490 IEMSLNAN 497
IE+SL A
Sbjct: 485 IEISLLAK 492
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 177/442 (40%), Positives = 276/442 (62%), Gaps = 30/442 (6%)
Query: 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSG 145
P V +A + LFGYH+GV+NG + +AK+LG N +L+G +VS +AGA VGS + G
Sbjct: 106 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 165
Query: 146 SLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEV 205
+LADK G RTFQ+D IPL +GA + A A S+ M+ GR L G+GIG+++ +VP+YISE+
Sbjct: 166 ALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEI 225
Query: 206 APTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265
+PT+ RG+LG++ Q+ C+GI+ +L G+P +P WWRTM +A +P +LA+GM F+
Sbjct: 226 SPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSP 285
Query: 266 ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325
ESPRWL + G +++A+ I L+G+ + + + + + S+ ++ W +L + +
Sbjct: 286 ESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLS-ASGQGSSEPEAGWFDLFSSRYWK 344
Query: 326 VAFIGDG-----------------------------ALASLLVGVTNFAGALCASYLMDK 356
V +G AS LVG +N G AS LMDK
Sbjct: 345 VVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDK 404
Query: 357 EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLV 416
GR+ LL+ S+ GMA+SMLL+ + + +S L+++GT+ Y+ +F++GAGPV L+
Sbjct: 405 MGRKSLLLTSFGGMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALL 464
Query: 417 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 476
+PE+ ++R R K + S +HW+ NF++GL+FL +V FG++ VY GF GV +L+ L+
Sbjct: 465 LPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIA 524
Query: 477 YFIVETKGRSLEEIEMSLNANS 498
+VETKGRSLEEIE++L + +
Sbjct: 525 GNVVETKGRSLEEIELALTSGA 546
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 200/484 (41%), Positives = 284/484 (58%), Gaps = 44/484 (9%)
Query: 56 RSRKQKQDGENLLSRDQKAEE--------GFDLG---WLPAFPHVLIASMSNFLFGYHIG 104
R ++ + LS KAE G D G W + PHVL+AS+++ LFGYH+G
Sbjct: 14 RHIDKRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLG 73
Query: 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164
V+N + SI+ +LGF GN I EGLVVS + GAF+GS+ SG +AD +G RR FQ+ +P+
Sbjct: 74 VVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPM 133
Query: 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL 224
I+GA +SA SL ML GRFLVG+G+G+ + +Y++EV+P RG+ G+ Q+ TC+
Sbjct: 134 IVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCI 193
Query: 225 GIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
G++ SLF GIPA+D+ WWR +I+++P +LA+ M+ VESP+WL K G +A+AV
Sbjct: 194 GLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVF 253
Query: 285 ANLWGESEINKAIEEFQLVIKKDGSDLDS-QWSELLEEPHSRVAFIGD------------ 331
L G S + A+ E LV G D DS + SELL RV FIG
Sbjct: 254 EKLLGGSYVKAAMAE--LVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGIN 311
Query: 332 ----------------GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISM- 374
A A++ VGV N G+ A LMDK GR+ LLIGS+ GMA+S+
Sbjct: 312 AVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLG 371
Query: 375 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF 434
L + TSLP + LS+ G L ++ +FA GAGPV L++ E+ R R +
Sbjct: 372 LQAIAYTSLP-SPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATALAVCL 430
Query: 435 SVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSL 494
+VHWV NF VGL FL ++E G + A FG +++ +F +VETKG+SL+EIE+SL
Sbjct: 431 AVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQEIEISL 490
Query: 495 NANS 498
+++
Sbjct: 491 LSST 494
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 222/442 (50%), Gaps = 42/442 (9%)
Query: 93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG 152
++ L+GY GV++G I+ + KELG N EGLVVS + GA +GS ++G L D+ G
Sbjct: 14 ALGGALYGYDTGVISGAILFMKKELGL--NAFTEGLVVSSLLVGAILGSGAAGKLTDRFG 71
Query: 153 CRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG 212
++ + +G + A A + M+ R ++GL +G +T +VP+Y+SE+AP RG
Sbjct: 72 RKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRG 131
Query: 213 SLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLC 272
+L +L Q+ +GI+ S + D WR ML +A++P +L +G+ F ESPRWL
Sbjct: 132 ALSSLNQLMITVGILLSYIVNYIFADAEA-WRWMLGLAAVPSLLLLIGILFMPESPRWLF 190
Query: 273 KGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI--- 329
G + AK ++ L G +I++ I + + K+D L L +P R A I
Sbjct: 191 TNGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKE-----LFDPWVRPALIAGL 245
Query: 330 -------------------------GDGALASLL----VGVTNFAGALCASYLMDKEGRQ 360
G G AS+L +G N L A ++DK GR+
Sbjct: 246 GLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRK 305
Query: 361 KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTL-FYIFTFAIGAGPVTGLVIPE 419
LL+ GM IS L+V+ +L D + + + + L +I FA+ GPV +++PE
Sbjct: 306 PLLLFGNAGMVIS-LIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPVVWVMLPE 364
Query: 420 LSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFI 479
L RG G S + V +V L + L+E G++ ++ + + +++ LF + +
Sbjct: 365 LFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKV 424
Query: 480 VETKGRSLEEIEMSLNANSTPG 501
ETKGRSLEEIE L + G
Sbjct: 425 TETKGRSLEEIEQDLRDKNGQG 446
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 229/436 (52%), Gaps = 43/436 (9%)
Query: 93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG 152
++ L+GY GV++G ++ I ++ + EGLVVS+ + GA GS SG+ +D+ G
Sbjct: 15 ALGGLLYGYDTGVISGALLFINNDIPL--TTLTEGLVVSMLLLGAIFGSALSGTCSDRWG 72
Query: 153 CRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG 212
R+ + +I I+GA+ A + ++ ++ R ++GL +G +T LVP+Y+SE+APTK RG
Sbjct: 73 RRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132
Query: 213 SLGTLCQVGTCLGIITSL---FLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPR 269
+LGT+ + GI+ + +L P E WR M+ +A++P +L +G+ F ESPR
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA----WRWMVGLAAVPAVLLLIGIAFMPESPR 188
Query: 270 WLCKGGMLNDAKAVIANLWGESEINKAIEEFQL--VIKKDGS--DLDSQWSE-------- 317
WL K G +A+ ++ +I + E + KK+ + L ++W
Sbjct: 189 WLVKRGSEEEARRIMNITHDPKDIEMELAEMKQGEAEKKETTLGVLKAKWIRPMLLIGVG 248
Query: 318 --LLEEP--------HSRVAFIGDG------ALASLLVGVTNFAGALCASYLMDKEGRQK 361
+ ++ ++ F G AL ++ +G+ N + A L+D+ GR+K
Sbjct: 249 LAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNVIMCITAMILIDRVGRKK 308
Query: 362 LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF---YIFTFAIGAGPVTGLVIP 418
LLI +G+ +S+ + G L S + + + +F YI + GPV +++P
Sbjct: 309 LLIWGSVGITLSLAALSGVL---LTLGLSASTAWMTVVFLGVYIVFYQATWGPVVWVLMP 365
Query: 419 ELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 478
EL ++ RG GF+ V N +V L F ++ G+A V+ F + LLS FA+Y
Sbjct: 366 ELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYM 425
Query: 479 IVETKGRSLEEIEMSL 494
+ ETKG+SLEEIE SL
Sbjct: 426 VPETKGKSLEEIEASL 441
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/451 (28%), Positives = 205/451 (45%), Gaps = 37/451 (8%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
+L+++ LFGY GV+NG + + + N EGLV S + GA +G++ G ++
Sbjct: 15 ILVSTFGGLLFGYDTGVLNGALPYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFGGRMS 74
Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
D G R+ + + I A ++ M+ RF++G+ +G +V VP Y++E++P
Sbjct: 75 DFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAEMSPV 134
Query: 209 KYRGSLGTLCQV----GTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264
+ RG + T ++ G L + + LG D+ H WR ML IASLP L GM
Sbjct: 135 ESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVIASLPALFLFFGMIRM 194
Query: 265 VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324
ESPRWL G DA V+ + E ++E + KK+ + + +L
Sbjct: 195 PESPRWLVSKGRKEDALRVLKKIRDEKRAAAELQEIEFAFKKEDQLEKATFKDLSVPWVR 254
Query: 325 RVAFIGDGA-------------------------------LASLLVGVTNFAGALCASYL 353
R+ FIG G + ++ GV + +L
Sbjct: 255 RIVFIGLGIAIVQQITGVNSIMYYGTEILRNSGFQTEAALIGNIANGVISVLATFVGIWL 314
Query: 354 MDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPV 412
+ + GR+ +L+ +G ++LL +G SL L+ + +L F GA PV
Sbjct: 315 LGRVGRRPMLMTGLIGTTTALLL-IGIFSLVLEGSPALPYVVLSLTVTFLAFQQGAISPV 373
Query: 413 TGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 472
T L++ E+ R RG MG + W+ NF V F L+ G++ + F G+ + S
Sbjct: 374 TWLMLSEIFPLRLRGLGMGVTVFCLWMVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSV 433
Query: 473 LFAYYFIVETKGRSLEEIEMSLNANSTPGNK 503
LF F+ ETKG SLE++E + A G K
Sbjct: 434 LFVKRFLPETKGLSLEQLEENFRAYDHSGAK 464
|
Major myo-inositol uptake transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 131/466 (28%), Positives = 227/466 (48%), Gaps = 65/466 (13%)
Query: 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISS 144
AF ++ASM++ L GY IGVM+G ++ I ++L N + G++ + +GS ++
Sbjct: 36 AFACAILASMTSILLGYDIGVMSGAMIYIKRDLKI--NDLQIGILAGSLNIYSLIGSCAA 93
Query: 145 GSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISE 204
G +D +G R T + GAI+ + + +++GRF+ G+G+G ++ P+Y +E
Sbjct: 94 GRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAE 153
Query: 205 VAPTKYRGSLGTLCQV----GTCLGIITSL-FLGIPAEDDPHWWRTMLYIASLPGFILAL 259
V+P RG L + +V G LG +++L F +P + WR ML I ++P ILA+
Sbjct: 154 VSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVG---WRLMLGIGAVPSVILAI 210
Query: 260 GMQFTVESPRWLCKGGMLNDAKAVIANLWGE-SEINKAIEEFQ-------------LVIK 305
G+ ESPRWL G L DAK V+ +E +E+ + + +
Sbjct: 211 GVLAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEATLRLEDIKHAAGIPADCHDDVVQVS 270
Query: 306 KDGSDLDSQWSELLEEPHSRV-----AFIG------------------------------ 330
+ S + W ELL P V A IG
Sbjct: 271 RRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLFSPRIFKTAGLKTDH 330
Query: 331 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED-- 388
LA++ VGV + L A++L+D+ GR+ LL+ S GM +S L +G + +D+
Sbjct: 331 QQLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLS-LAALGTSLTIIDQSEK 389
Query: 389 ---FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG 445
++ ++I + Y+ TF+IGAGP+T + E+ R R + V+ V + ++
Sbjct: 390 KVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGVIS 449
Query: 446 LFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIE 491
+ FL + + + FGG++ ++ +F Y F+ ET+GR LE+++
Sbjct: 450 ISFLPMSKAMTTGGAFYLFGGIATVAWVFFYTFLPETQGRMLEDMD 495
|
Plasma membrane broad-spectrum sugar-proton symporter. Mediates the uptake of linear polyols such as sorbitol, xylitol, erythritol or glycerol. Can transport the cyclic polyol myo-inositol and different hexoses, pentoses (including ribose), tetroses and sugar alcohols. Arabidopsis thaliana (taxid: 3702) |
| >sp|P54723|YFIG_BACSU Putative metabolite transport protein YfiG OS=Bacillus subtilis (strain 168) GN=yfiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 210/447 (46%), Gaps = 49/447 (10%)
Query: 90 LIASMSNFLFGYHIGVMNG--PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
L+++ LFGY GV+NG P ++ A +L P+ EGLV S + GA G++ G L
Sbjct: 26 LVSTFGGLLFGYDTGVINGALPFMATAGQLNL--TPVTEGLVASSLLLGAAFGAMFGGRL 83
Query: 148 ADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP 207
+D+ G R+T + I + + + M+ RFL+GL +G +V VP +++E++P
Sbjct: 84 SDRHGRRKTILYLALLFIAATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAEISP 143
Query: 208 TKYRGSLGT----LCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263
+ RG + T + +G L + +G + + WR ML IA+LP +L GM
Sbjct: 144 AERRGRIVTQNELMIVIGQLLAYTFNAIIGSTMGESANVWRYMLVIATLPAVVLWFGMLI 203
Query: 264 TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVI----KKDG-SDLDSQW--- 315
ESPRWL G + DA V+ + +S+ + I+E + I KK G D W
Sbjct: 204 VPESPRWLAAKGRMGDALRVLRQIREDSQAQQEIKEIKHAIEGTAKKAGFHDFQEPWIRR 263
Query: 316 ------------------------SELLEEP--HSRVAFIGDGALASLLVGVTNFAGALC 349
+E+L E + A IG+ A GV + +
Sbjct: 264 ILFIGIGIAIVQQITGVNSIMYYGTEILREAGFQTEAALIGNIA-----NGVISVIAVIF 318
Query: 350 ASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA 409
+L+ K R+ +LI +G ++ LL++G S+ L+ + +L F A
Sbjct: 319 GIWLLGKVRRRPMLIIGQIG-TMTALLLIGILSIVLEGTPALPYVVLSLTILFLAFQQTA 377
Query: 410 -GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 468
VT L++ E+ RG MG S W NFL+G F L+ G++ + F ++
Sbjct: 378 ISTVTWLMLSEIFPMHVRGLGMGISTFCLWTANFLIGFTFPILLNHIGMSATFFIFVAMN 437
Query: 469 LLSALFAYYFIVETKGRSLEEIEMSLN 495
+L+ LF ++ ETKGRSLE++E S
Sbjct: 438 ILAILFVKKYVPETKGRSLEQLEHSFR 464
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P94493|YNCC_BACSU Putative metabolite transport protein YncC OS=Bacillus subtilis (strain 168) GN=yncC PE=3 SV=2 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/448 (29%), Positives = 210/448 (46%), Gaps = 40/448 (8%)
Query: 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL 151
A+ LFGY GV+NG + +A+ + P+ EGLV SI + GA G++ G LAD+
Sbjct: 18 ATFGGLLFGYDTGVINGALPFMARPDQLDLTPVTEGLVTSILLLGAAFGALLCGRLADRY 77
Query: 152 GCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYR 211
G R+ + L ++ +A A ++ M RFL+GL +G + +VP +++E+AP + R
Sbjct: 78 GRRKMILNLSFLFFLASLGTALAPNVFIMAVFRFLLGLAVGGASAMVPAFLAEMAPHEKR 137
Query: 212 GSLGTLCQV----GTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVES 267
G + T ++ G L + + LG+ + H WR ML I ++P +L M ES
Sbjct: 138 GRMVTQNELMIVGGQFLAYVFNAILGVTMANTGHVWRYMLVICAVPAIMLFASMLKVPES 197
Query: 268 PRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGS-------DLDSQWSELLE 320
PRWL G ++A V+ + + E Q ++KD + D + W L
Sbjct: 198 PRWLISKGKNSEALRVLKQIREDKRAEAECREIQEAVEKDTALEKASLKDFSTPWLRRLL 257
Query: 321 EPHSRVAFI--------------------GDGALASLLVGVTN----FAGALCASYLMDK 356
VA + G G A+L+ + N + +L+ K
Sbjct: 258 WIGIGVAIVNQITGVNSIMYYGTQILKESGFGTKAALIANIGNGLISVIAVIFGIWLVGK 317
Query: 357 EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGL 415
R+ +L+ G ++LL + S+ LD + +L F G GPVT L
Sbjct: 318 VRRRPILLIGLAGTTTALLL-IAIFSIVLDGSMALPYVVLSLTVLFLAFMQGCVGPVTWL 376
Query: 416 VIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA 475
VI E+ R RG G S W+ NF++G F L+ + G++ + F + +L+ F
Sbjct: 377 VIAEIFPQRLRGLGSGISVFFLWILNFVIGFAFPILLSSVGLSFTFFIFVALGVLAIGFV 436
Query: 476 YYFIVETKGRSLEEIE---MSLNANSTP 500
Y F+ ETKGR+LEE+E S + ++TP
Sbjct: 437 YKFMPETKGRTLEELEEHFRSRHDHNTP 464
|
Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 503 | ||||||
| 297739205 | 537 | unnamed protein product [Vitis vinifera] | 0.984 | 0.921 | 0.722 | 0.0 | |
| 225447125 | 546 | PREDICTED: probable plastidic glucose tr | 0.988 | 0.910 | 0.712 | 0.0 | |
| 224136954 | 518 | predicted protein [Populus trichocarpa] | 0.968 | 0.940 | 0.694 | 0.0 | |
| 297848760 | 521 | hypothetical protein ARALYDRAFT_470494 [ | 0.950 | 0.917 | 0.704 | 0.0 | |
| 449463102 | 540 | PREDICTED: probable plastidic glucose tr | 0.992 | 0.924 | 0.663 | 0.0 | |
| 449505434 | 540 | PREDICTED: probable plastidic glucose tr | 0.992 | 0.924 | 0.661 | 0.0 | |
| 310877902 | 439 | putative monosaccharide transporter [Vit | 0.803 | 0.920 | 0.782 | 0.0 | |
| 357462225 | 556 | hypothetical protein MTR_3g080240 [Medic | 0.948 | 0.857 | 0.662 | 0.0 | |
| 356547853 | 515 | PREDICTED: probable plastidic glucose tr | 0.942 | 0.920 | 0.675 | 0.0 | |
| 42561706 | 524 | putative plastidic glucose transporter 1 | 0.870 | 0.835 | 0.730 | 0.0 |
| >gi|297739205|emb|CBI28856.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/533 (72%), Positives = 429/533 (80%), Gaps = 38/533 (7%)
Query: 1 MRVATVLHHPVRPVPSYRSTLFTPS-------PAKMKTLRFSFSHRSTKFKVLAAKKQLP 53
M AT++H P+ VP S P +K K RF F RS K +V AAK+QLP
Sbjct: 1 MWAATLVHQPLYVVPKILSPQSNPKLFAYPLIKSKPKCRRFGFRSRSKKLEVSAAKEQLP 60
Query: 54 ELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSI 113
EL + QK + + + ++ +EGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVS+
Sbjct: 61 ELHA--QKPGAKEVATEEEDGDEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSV 118
Query: 114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ 173
A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GCRRT QIDTIPLILGA+ISAQ
Sbjct: 119 ARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGCRRTLQIDTIPLILGALISAQ 178
Query: 174 AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
AHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SLFLG
Sbjct: 179 AHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIVSLFLG 238
Query: 234 IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI 293
IP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK G LN+AK +I +LWG SE+
Sbjct: 239 IPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCKAGRLNEAKTIIRSLWGVSEV 298
Query: 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG----------------------- 330
++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIG
Sbjct: 299 DRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTLFFLQQFAGINGVLYFSSLTF 358
Query: 331 ------DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP 384
GALASL VGVTNFAGALCA YLMD++GRQ+LLIGSYLGMA+SM L+V A P
Sbjct: 359 QDVGITSGALASLFVGVTNFAGALCALYLMDRQGRQRLLIGSYLGMAVSMFLIVYAIISP 418
Query: 385 LDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLV 444
+DE HNLSILGTL YIF+FAIGAGPVTGL+IPELSS +TRGKIMGFSFSVHWVCNF+V
Sbjct: 419 VDEQLGHNLSILGTLMYIFSFAIGAGPVTGLIIPELSSTQTRGKIMGFSFSVHWVCNFVV 478
Query: 445 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 497
GL+FL+LVE GVAPVYA FGGVSLLSA+FAYYFIVETKGRSLEEIEMSLN N
Sbjct: 479 GLYFLELVEKLGVAPVYASFGGVSLLSAIFAYYFIVETKGRSLEEIEMSLNRN 531
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447125|ref|XP_002271129.1| PREDICTED: probable plastidic glucose transporter 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/540 (71%), Positives = 430/540 (79%), Gaps = 43/540 (7%)
Query: 1 MRVATVLHHPVRPVPSYRSTLFTPS-------PAKMKTLRFSFSHRSTKFKVLAAKKQLP 53
M AT++H P+ VP S P +K K RF F RS K +V AAK+QLP
Sbjct: 1 MWAATLVHQPLYVVPKILSPQSNPKLFAYPLIKSKPKCRRFGFRSRSKKLEVSAAKEQLP 60
Query: 54 ELRSRKQKQDGE-------NLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVM 106
EL ++K + E + + ++ +EGFDLGWLPAFPHVLIASMSNFLFGYHIGVM
Sbjct: 61 ELHAQKPVEIRELGVAGAKEVATEEEDGDEGFDLGWLPAFPHVLIASMSNFLFGYHIGVM 120
Query: 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166
NGPIVS+A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GCRRT QIDTIPLIL
Sbjct: 121 NGPIVSVARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGCRRTLQIDTIPLIL 180
Query: 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI 226
GA+ISAQAHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGI
Sbjct: 181 GALISAQAHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGI 240
Query: 227 ITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIAN 286
I SLFLGIP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK G LN+AK +I +
Sbjct: 241 IVSLFLGIPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCKAGRLNEAKTIIRS 300
Query: 287 LWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG---------------- 330
LWG SE+++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIG
Sbjct: 301 LWGVSEVDRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTLFFLQQFAGINGVL 360
Query: 331 -------------DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 377
GALASL VGVTNFAGALCA YLMD++GRQ+LLIGSYLGMA+SM L+
Sbjct: 361 YFSSLTFQDVGITSGALASLFVGVTNFAGALCALYLMDRQGRQRLLIGSYLGMAVSMFLI 420
Query: 378 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH 437
V A P+DE HNLSILGTL YIF+FAIGAGPVTGL+IPELSS +TRGKIMGFSFSVH
Sbjct: 421 VYAIISPVDEQLGHNLSILGTLMYIFSFAIGAGPVTGLIIPELSSTQTRGKIMGFSFSVH 480
Query: 438 WVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 497
WVCNF+VGL+FL+LVE GVAPVYA FGGVSLLSA+FAYYFIVETKGRSLEEIEMSLN N
Sbjct: 481 WVCNFVVGLYFLELVEKLGVAPVYASFGGVSLLSAIFAYYFIVETKGRSLEEIEMSLNRN 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136954|ref|XP_002326986.1| predicted protein [Populus trichocarpa] gi|222835301|gb|EEE73736.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/534 (69%), Positives = 415/534 (77%), Gaps = 47/534 (8%)
Query: 1 MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQ--LPELRSR 58
M VATVL PV PV S ++ P K + F FS+R +V A K+Q LPE ++
Sbjct: 1 MWVATVLPKPVPPVLSVLTSSRNP---KQSSFHFRFSYRPLNLEVSATKQQQQLPEPKA- 56
Query: 59 KQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELG 118
D+K DLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVS+AKELG
Sbjct: 57 ------------DKKNPSSSDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSVAKELG 104
Query: 119 FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178
FEGN LEGLVVSIFIAGAF+GS++SGSL DKLGCRRTFQ+DTIPLILGA++SAQAHSLD
Sbjct: 105 FEGNSTLEGLVVSIFIAGAFLGSVASGSLVDKLGCRRTFQLDTIPLILGALVSAQAHSLD 164
Query: 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED 238
E+LWGRFLVGLGIGV+TVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SLFL IP+E
Sbjct: 165 EILWGRFLVGLGIGVHTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIASLFLDIPSET 224
Query: 239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE 298
DPHWWRT+LY+AS PGFILALGMQF VESPRWLCK G L+DAK VI N+WG SE+ AI+
Sbjct: 225 DPHWWRTILYLASAPGFILALGMQFAVESPRWLCKVGRLDDAKTVIRNIWGSSEVETAIQ 284
Query: 299 EFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG---------------------------- 330
+FQ VIK +G ++ S W ELLEEPHSRVAFIG
Sbjct: 285 DFQSVIKNNGVNVGSGWLELLEEPHSRVAFIGGALFVLQQFAGINGVLYFSSLTFKDVGI 344
Query: 331 -DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 389
+LASL VG+ NFAGALCA YLMDKEGRQKLLIGSYLGMA+SM L+ A P+DE+
Sbjct: 345 TSSSLASLFVGLANFAGALCAVYLMDKEGRQKLLIGSYLGMAVSMFLIACAIGFPVDEEL 404
Query: 390 SHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 449
SHNLSILGTL YIFTFAIGAGPVTGL+IPELSS + RGKIMGFSFSVHWVCNFLVGL FL
Sbjct: 405 SHNLSILGTLMYIFTFAIGAGPVTGLIIPELSSAKMRGKIMGFSFSVHWVCNFLVGLLFL 464
Query: 450 DLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTPGNK 503
DLVE FGVAPVY GFG VSLL+A++A YF+VETKGRSLEEIEMSLN N + +K
Sbjct: 465 DLVEIFGVAPVYTGFGSVSLLAAIYAKYFLVETKGRSLEEIEMSLNPNFSVRDK 518
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848760|ref|XP_002892261.1| hypothetical protein ARALYDRAFT_470494 [Arabidopsis lyrata subsp. lyrata] gi|297338103|gb|EFH68520.1| hypothetical protein ARALYDRAFT_470494 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/515 (70%), Positives = 408/515 (79%), Gaps = 37/515 (7%)
Query: 19 STLFTPSPAKMKTLRFSFSHRSTK------FKVLAAKKQLPELRSRKQKQDGENLLSRDQ 72
+T+ P + L FS+ R T F K ++ L + K K D ++ LS D+
Sbjct: 5 NTVILHQPNSLTRLTFSYPTRLTHSRKVSPFSRFLRKNRVTALSTTK-KPDEDHELSPDE 63
Query: 73 KAEE-GFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVS 131
K E+ DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGFEGN ILEGLVVS
Sbjct: 64 KLEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVS 123
Query: 132 IFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI 191
IFIAGAF+GSI SG L DK G RRTFQI TIPLILGA++SAQAHSLDE+L GRFLVGLGI
Sbjct: 124 IFIAGAFIGSIVSGPLVDKFGYRRTFQIVTIPLILGALVSAQAHSLDEILCGRFLVGLGI 183
Query: 192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251
GVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDDPHWWRTMLY+AS
Sbjct: 184 GVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVAS 243
Query: 252 LPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDL 311
+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SEI KA+E+FQ V+K +GS+L
Sbjct: 244 MPGFLLALGMQFAVESPRWLCKVGQLDDAKVVIRNIWGGSEIEKAVEDFQSVMKNNGSNL 303
Query: 312 DSQWSELLEEPHSRVAFIG-----------------------------DGALASLLVGVT 342
+S+W ELL++PHSRVAFIG GA ASL VGVT
Sbjct: 304 NSRWLELLDKPHSRVAFIGGTLFVLQQFAGINGVLYFSSITFQNVGITSGAQASLYVGVT 363
Query: 343 NFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYI 402
NFAGALCASYL+DK+GR+KLLIGSYLGMA+SM L+V + PLDED S +LSILGTL YI
Sbjct: 364 NFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYSVGFPLDEDLSQSLSILGTLMYI 423
Query: 403 FTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYA 462
F+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE FGV VYA
Sbjct: 424 FSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVEKFGVGTVYA 483
Query: 463 GFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 497
GFG VSLL+A F+Y FIVETKGRSLEEIEMSLN+
Sbjct: 484 GFGSVSLLAAAFSYRFIVETKGRSLEEIEMSLNSR 518
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463102|ref|XP_004149273.1| PREDICTED: probable plastidic glucose transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/544 (66%), Positives = 415/544 (76%), Gaps = 45/544 (8%)
Query: 1 MRVATVLHHPVRPVPSYRSTLFTPSPAKMKT-------LR--FSFSHRST-KFKVLAAKK 50
MRV +LH PV P P+ P LR F + RS KF+VLA K
Sbjct: 1 MRVIPLLHFPVPPAPAITIARRHSIPPSYDLSGHGSFPLRSGFRYMFRSVRKFEVLATNK 60
Query: 51 QLPELRSRKQKQDGENLLSRDQKAEEG--FDLGWLPAFPHVLIASMSNFLFGYHIGVMNG 108
QLPEL+ K + + LL +AE G FDLGWLPAFPHVL+ASMSNFLFGYHIGVMNG
Sbjct: 61 QLPELKDGKSESEEGILL----RAEVGGSFDLGWLPAFPHVLVASMSNFLFGYHIGVMNG 116
Query: 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168
PI+SIA+ELGFEGN ILEGLVVSIFI GAF+GSISSGSL DKLG RRTFQ+ TIPLILGA
Sbjct: 117 PIISIARELGFEGNSILEGLVVSIFIVGAFLGSISSGSLLDKLGFRRTFQLATIPLILGA 176
Query: 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT 228
++SAQA +LDE+LWGRFLVGLGIGVNTVLVPIYISEV PTKYRG+LG LCQ+GTCLGII
Sbjct: 177 LLSAQALTLDEVLWGRFLVGLGIGVNTVLVPIYISEVVPTKYRGTLGGLCQIGTCLGIIA 236
Query: 229 SLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW 288
SLFLGIP E+DPHWWRTMLYIASLPGF +A GMQF VESPRWL K G L++ + VI NLW
Sbjct: 237 SLFLGIPYENDPHWWRTMLYIASLPGFFIAFGMQFAVESPRWLSKAGRLDETRVVIRNLW 296
Query: 289 GESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDG---------------- 332
GESE+ +A+EEFQ VI+ DGSDL+S WS LLEE + RVAFIG
Sbjct: 297 GESEVERAVEEFQSVIRNDGSDLNSGWSVLLEEQNFRVAFIGGALFFLQQFAGINGVLYF 356
Query: 333 -------------ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 379
A+ASL++G+TNF+GALCA YLMDK+GRQ+LLIGSYLGMA+SMLL+V
Sbjct: 357 SSLTFEDVGITNVAVASLVIGITNFSGALCALYLMDKQGRQRLLIGSYLGMAVSMLLIVS 416
Query: 380 ATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV 439
DE+ SHNLSI+GT+ YIF+FAIGAGPVTG++IPELSS R RGKIM FS +VHWV
Sbjct: 417 TIGFQFDEELSHNLSIVGTIAYIFSFAIGAGPVTGIIIPELSSTRARGKIMAFSLAVHWV 476
Query: 440 CNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANST 499
CNFLVGLFFLDLV+TFGVAPVYA FG SL++A+F+ YF+VETKGRSLEEIEM+LN N
Sbjct: 477 CNFLVGLFFLDLVQTFGVAPVYASFGAFSLVAAIFSKYFLVETKGRSLEEIEMTLNTNFH 536
Query: 500 PGNK 503
+K
Sbjct: 537 GSDK 540
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505434|ref|XP_004162468.1| PREDICTED: probable plastidic glucose transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/544 (66%), Positives = 417/544 (76%), Gaps = 45/544 (8%)
Query: 1 MRVATVLHHPVRPVPSYR-STLFTPSPAKMKTLRFSFSHRS---------TKFKVLAAKK 50
MRV +LH PV P P+ + + P+ + SF RS KF+VLA K
Sbjct: 1 MRVIPLLHFPVPPAPAITIARRHSIPPSYDLSGHGSFPLRSGFRYMFPSVRKFEVLATNK 60
Query: 51 QLPELRSRKQKQDGENLLSRDQKAEEG--FDLGWLPAFPHVLIASMSNFLFGYHIGVMNG 108
QLPEL+ K + + LL +AE G FDLGWLPAFPHVL+ASMSNFLFGYHIGVMNG
Sbjct: 61 QLPELKDGKSESEEGILL----RAEVGGSFDLGWLPAFPHVLVASMSNFLFGYHIGVMNG 116
Query: 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168
PI+SIA+ELGFEGN ILEGLVVSIFI GAF+GSISSGSL DKLG RRTFQ+ TIPLILGA
Sbjct: 117 PIISIARELGFEGNSILEGLVVSIFIVGAFLGSISSGSLLDKLGFRRTFQLATIPLILGA 176
Query: 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT 228
++SAQA +LDE+LWGRFLVGLGIGVNTVLVPIYISEV PTKYRG+LG LCQ+GTCLGII
Sbjct: 177 LLSAQALTLDEVLWGRFLVGLGIGVNTVLVPIYISEVVPTKYRGTLGGLCQIGTCLGIIA 236
Query: 229 SLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW 288
SLFLGIP E+DPHWWRTMLYIASLPGF +A GMQF VESPRWL K G L++ + VI NLW
Sbjct: 237 SLFLGIPYENDPHWWRTMLYIASLPGFFIAFGMQFAVESPRWLSKAGRLDETRVVIRNLW 296
Query: 289 GESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDG---------------- 332
GESE+ +A+EEFQ VI+ DGSDL+S WS LLEE + RVAFIG
Sbjct: 297 GESEVERAVEEFQSVIRNDGSDLNSGWSVLLEEQNFRVAFIGGALFFLQQFAGINGVLYF 356
Query: 333 -------------ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 379
A+ASL++G+TNF+GALCA YLMDK+GRQ+LLIGSYLGMA+SMLL+V
Sbjct: 357 SSLTFEDVGITNVAVASLVIGITNFSGALCALYLMDKQGRQRLLIGSYLGMAVSMLLIVS 416
Query: 380 ATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV 439
DE+ SHNLSI+GT+ YIF+FAIGAGPVTG++IPELSS R RGKIM FS +VHWV
Sbjct: 417 TIGFQFDEELSHNLSIVGTIAYIFSFAIGAGPVTGIIIPELSSTRARGKIMAFSLAVHWV 476
Query: 440 CNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANST 499
CNFLVGLFFLDLV+TFGVAPVYA FG SL++A+F+ YF+VETKGRSLEEIEM+LN N
Sbjct: 477 CNFLVGLFFLDLVQTFGVAPVYASFGAFSLVAAIFSKYFLVETKGRSLEEIEMTLNTNFH 536
Query: 500 PGNK 503
+K
Sbjct: 537 GSDK 540
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310877902|gb|ADP37182.1| putative monosaccharide transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/433 (78%), Positives = 370/433 (85%), Gaps = 29/433 (6%)
Query: 94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC 153
MSNFLFGYHIGVMNGPIVS+A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GC
Sbjct: 1 MSNFLFGYHIGVMNGPIVSVARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGC 60
Query: 154 RRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 213
RRT QIDTIPLILGA+ISAQAHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS
Sbjct: 61 RRTLQIDTIPLILGALISAQAHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 120
Query: 214 LGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCK 273
LGTLCQ+GTCLGII SLFLGIP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK
Sbjct: 121 LGTLCQIGTCLGIIVSLFLGIPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCK 180
Query: 274 GGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG--- 330
G LN+AK +I +LWG SE+++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIG
Sbjct: 181 AGRLNEAKTIIRSLWGVSEVDRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTL 240
Query: 331 --------------------------DGALASLLVGVTNFAGALCASYLMDKEGRQKLLI 364
GALASL VGVTNFAGALCA YLMD++GRQ+LLI
Sbjct: 241 FFLQQFAGINGVLYFSSLTFQDVGITSGALASLFVGVTNFAGALCALYLMDRQGRQRLLI 300
Query: 365 GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR 424
GSYLGMA+SM L+V A P+DE HNLSILGTL YIF+FAIGAGPVTGL+IPELSS +
Sbjct: 301 GSYLGMAVSMFLIVYAIISPVDEQLGHNLSILGTLMYIFSFAIGAGPVTGLIIPELSSTQ 360
Query: 425 TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG 484
TRGKIMGFSFSVHWVCNF+VGL+FL+LVE GVAPVYA FGGVSLLSA+FAYYFIVETKG
Sbjct: 361 TRGKIMGFSFSVHWVCNFVVGLYFLELVEKLGVAPVYASFGGVSLLSAIFAYYFIVETKG 420
Query: 485 RSLEEIEMSLNAN 497
RSLEEIEMSLN N
Sbjct: 421 RSLEEIEMSLNRN 433
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462225|ref|XP_003601394.1| hypothetical protein MTR_3g080240 [Medicago truncatula] gi|355490442|gb|AES71645.1| hypothetical protein MTR_3g080240 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/534 (66%), Positives = 404/534 (75%), Gaps = 57/534 (10%)
Query: 22 FTPSPAKMKTLRFSF--SHRSTKFKVLAAKKQ-LPELRSRKQKQDGE----NLLSRDQKA 74
F+ K+KT+ +S S R +K +V A K Q E ++ D E + L +
Sbjct: 23 FSKPKIKIKTIPYSLNSSFRLSKLRVSATKDQNHSESQTSNNVSDDEVTEQHPLDENGGV 82
Query: 75 EEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFI 134
GFDLGWLP+FPHVLIAS+SNF FGYHIG+MNGPI+SIA+ELGFEGN +EGLVVSIFI
Sbjct: 83 GGGFDLGWLPSFPHVLIASLSNFTFGYHIGIMNGPIISIARELGFEGNSFIEGLVVSIFI 142
Query: 135 AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVN 194
AGAF+GS+S+GSL DKLGCR TFQIDTIPLILGAIISA AHSLDE+L GRFLVGLGIGVN
Sbjct: 143 AGAFIGSLSTGSLVDKLGCRLTFQIDTIPLILGAIISANAHSLDEILGGRFLVGLGIGVN 202
Query: 195 TVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPG 254
VLVPIYISEVAPTKYRGSLG+LCQ+GTCLGII SL LGIP+E+DPHWWRTMLYIAS+PG
Sbjct: 203 AVLVPIYISEVAPTKYRGSLGSLCQIGTCLGIIASLSLGIPSENDPHWWRTMLYIASVPG 262
Query: 255 FILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314
F++ LGMQF V+SPRWLCK G +NDAK V+ LWG SE+ AIEEFQ V K DGSDLDS+
Sbjct: 263 FVVGLGMQFAVDSPRWLCKAGRINDAKRVVWELWGASEVEGAIEEFQSVSKNDGSDLDSR 322
Query: 315 WSELLEEPHSRVAFIG-----------------------------DGALASLLVGVTNFA 345
WSE+LE+PHSRVAFIG ALASL VG+TNFA
Sbjct: 323 WSEILEQPHSRVAFIGGALFVLQQFAGINAVLYFSSLTFQDVGIQSSALASLFVGLTNFA 382
Query: 346 GALCASYLMDKEGRQKLLIGSYLGM---------------------AISMLLVVGATSLP 384
GALCA YL+D+EGRQKL+IGSYLGM AISM LVV A P
Sbjct: 383 GALCALYLIDREGRQKLIIGSYLGMVSVCKMLVTSFLEYVNKSIMHAISMFLVVYAVIFP 442
Query: 385 LDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLV 444
LDE S+NLSILGT+ YIF+FAIGAGPVTG++IPELSS RTRGKIMGFSFS HWVCNF+V
Sbjct: 443 LDEQLSNNLSILGTIMYIFSFAIGAGPVTGIIIPELSSTRTRGKIMGFSFSTHWVCNFVV 502
Query: 445 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANS 498
GLFFL+LVE FGVAPVYA FG VSLL+A FA+YF+VETKG SLEEIE SLN+ +
Sbjct: 503 GLFFLELVEKFGVAPVYASFGAVSLLAAAFAHYFLVETKGCSLEEIERSLNSKA 556
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547853|ref|XP_003542319.1| PREDICTED: probable plastidic glucose transporter 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/521 (67%), Positives = 395/521 (75%), Gaps = 47/521 (9%)
Query: 4 ATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQD 63
A V H P P S +R S H S K KV A L+S + K
Sbjct: 10 AIVSVHYSEPSPKLVSISRARDKPYTLVIRSS-GHLSNKLKVSA-------LKSNETKPK 61
Query: 64 GENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP 123
+L GWLPAFPHVL+ASMSNF+FGYHIGVMNGPIVSIA+ELGFEGN
Sbjct: 62 QFSLCQN----------GWLPAFPHVLVASMSNFIFGYHIGVMNGPIVSIARELGFEGNS 111
Query: 124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183
+EGLVVSIFIAGAF+GSISS SL D+LG R TFQI++IPLILGAIISAQAHSL+E++ G
Sbjct: 112 FIEGLVVSIFIAGAFIGSISSASLLDRLGSRLTFQINSIPLILGAIISAQAHSLNEIIGG 171
Query: 184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243
RFLVGLGIGVNTVLVPIYISEVAPTKYRG+LG+LCQ+GTCLGIITSLFLGIP+E+DPHWW
Sbjct: 172 RFLVGLGIGVNTVLVPIYISEVAPTKYRGALGSLCQIGTCLGIITSLFLGIPSENDPHWW 231
Query: 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303
RTMLYIAS+PG ++ALGMQF V+SPRWLCK G +NDAK V+ LWG SE++ AIEEFQ V
Sbjct: 232 RTMLYIASIPGILVALGMQFAVDSPRWLCKAGRINDAKTVVRELWGASEVDSAIEEFQSV 291
Query: 304 IKKDGSDLDSQWSELLEEPHSRVAFIG-----------------------------DGAL 334
K DGSDL S+WSE+LEEPHSRVAFIG AL
Sbjct: 292 SKNDGSDLASRWSEILEEPHSRVAFIGGTLFVLQQFAGINGVLYFSSLTFQKVGVESSAL 351
Query: 335 ASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 394
ASL VG+TNFAGALCA YL+D+EGRQKLLIGSYLGMAISM LV PLDE +NLS
Sbjct: 352 ASLFVGLTNFAGALCALYLIDREGRQKLLIGSYLGMAISMFLVASGIIFPLDEQLGNNLS 411
Query: 395 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 454
ILGT+ YIF+FAIGAGPVTG++IPELSS RTRGKIMGFSFS HWVCNF+VGLFFL+LV+
Sbjct: 412 ILGTIMYIFSFAIGAGPVTGIIIPELSSTRTRGKIMGFSFSTHWVCNFVVGLFFLELVDK 471
Query: 455 FGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLN 495
FGVAPVYA FG +SLL+A FAYYFIVETKGRSLEEIE SLN
Sbjct: 472 FGVAPVYASFGAISLLAATFAYYFIVETKGRSLEEIERSLN 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42561706|ref|NP_171996.2| putative plastidic glucose transporter 1 [Arabidopsis thaliana] gi|117940084|sp|Q0WVE9.2|PLST1_ARATH RecName: Full=Probable plastidic glucose transporter 1 gi|53828535|gb|AAU94377.1| At1g05030 [Arabidopsis thaliana] gi|55733727|gb|AAV59260.1| At1g05030 [Arabidopsis thaliana] gi|332189660|gb|AEE27781.1| putative plastidic glucose transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/467 (73%), Positives = 383/467 (82%), Gaps = 29/467 (6%)
Query: 60 QKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGF 119
+K D ++ +S + DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGF
Sbjct: 54 KKPDDDHEISPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGF 113
Query: 120 EGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDE 179
EGN ILEGLVVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE
Sbjct: 114 EGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDE 173
Query: 180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239
+L GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDD
Sbjct: 174 ILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDD 233
Query: 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE 299
PHWWRTMLY+AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+
Sbjct: 234 PHWWRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVED 293
Query: 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIG----------------------------- 330
FQ V+K GS+L+S+W ELL++PHSRVAFIG
Sbjct: 294 FQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGIT 353
Query: 331 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 390
GA ASL VGVTNFAGALCASYL+DK+GR+KLLIGSYLGMA+SM L+V A PLDED S
Sbjct: 354 SGAQASLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLS 413
Query: 391 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 450
+LSILGTL YIF+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWV NFLVGLFFLD
Sbjct: 414 QSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLD 473
Query: 451 LVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 497
LVE +GV VYA FG VSLL+A F++ F VETKGRSLEEIE+SLN+
Sbjct: 474 LVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLNSR 520
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 503 | ||||||
| TAIR|locus:2205548 | 524 | AT1G05030 [Arabidopsis thalian | 0.656 | 0.629 | 0.675 | 1.6e-182 | |
| TAIR|locus:2019554 | 494 | AT1G67300 [Arabidopsis thalian | 0.626 | 0.637 | 0.416 | 1.8e-97 | |
| TAIR|locus:2017899 | 495 | SGB1 "SUPPRESSOR OF G PROTEIN | 0.662 | 0.672 | 0.382 | 5.1e-58 | |
| TAIR|locus:2181422 | 546 | PGLCT "plastidic GLC transloca | 0.677 | 0.624 | 0.367 | 3.7e-55 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.469 | 0.406 | 0.344 | 9.9e-43 | |
| TAIR|locus:2094034 | 539 | PMT5 "polyol/monosaccharide tr | 0.387 | 0.361 | 0.341 | 1.7e-40 | |
| UNIPROTKB|P0AEP1 | 464 | galP "galactose:H+ symporter" | 0.459 | 0.497 | 0.327 | 6e-40 | |
| UNIPROTKB|Q96QE2 | 648 | SLC2A13 "Proton myo-inositol c | 0.558 | 0.433 | 0.288 | 5.3e-39 | |
| UNIPROTKB|F1PGX9 | 652 | SLC2A13 "Uncharacterized prote | 0.510 | 0.394 | 0.286 | 8.1e-39 | |
| TAIR|locus:2046333 | 508 | AT2G18480 [Arabidopsis thalian | 0.479 | 0.474 | 0.304 | 1.7e-38 |
| TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1120 (399.3 bits), Expect = 1.6e-182, Sum P(2) = 1.6e-182
Identities = 231/342 (67%), Positives = 264/342 (77%)
Query: 5 TVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQDG 64
TVL + RP R T P+ SFS F+ KK++ L ++K D
Sbjct: 6 TVLLY--RPNSMNRLTFSYPTRLAHSRKASSFSRF---FRSSKRKKRVTTLSTKKPDDDH 60
Query: 65 ENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPI 124
E +S + DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGFEGN I
Sbjct: 61 E--ISPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSI 118
Query: 125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR 184
LEGLVVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE+L GR
Sbjct: 119 LEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGR 178
Query: 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244
FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDDPHWWR
Sbjct: 179 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWR 238
Query: 245 TMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVI 304
TMLY+AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+FQ V+
Sbjct: 239 TMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVM 298
Query: 305 KKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAG 346
K GS+L+S+W ELL++PHSRVAFIG SL V + FAG
Sbjct: 299 KNSGSNLNSRWLELLDKPHSRVAFIG----GSLFV-LQQFAG 335
|
|
| TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
Identities = 135/324 (41%), Positives = 201/324 (62%)
Query: 62 QDGENLLSRDQKAE-EGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE 120
+D LL D E E + W + PHVL+A++S+FLFGYH+GV+N P+ SI+ +LGF
Sbjct: 27 EDSSGLLENDVDNEMETTNPSWKCSLPHVLVATISSFLFGYHLGVVNEPLESISSDLGFS 86
Query: 121 GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180
G+ + EGLVVS+ + GAF+GS+ SG +AD G RR FQI +P+ILGA +S ++SL M
Sbjct: 87 GDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQICALPMILGAFVSGVSNSLAVM 146
Query: 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240
L GRFLVG G+G+ + +Y++EV+P RG+ G+ Q+ TCLG++ +LF+GIP +
Sbjct: 147 LLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFIQIATCLGLMAALFIGIPVHNIT 206
Query: 241 HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE- 299
WWR +++++P +LALGM ESP+WL K G + +A+A L G S + A+ E
Sbjct: 207 GWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQGKIAEAEAEFERLLGGSHVKTAMAEL 266
Query: 300 FQLVIKK-DGSDLDSQWSELLEEPHSRVAFIGDGALA-SLLVGVTN---FAGALCASYLM 354
++L + K D D+ S SELL HSRV FIG A L G+ F+ + S +
Sbjct: 267 YKLDLDKTDEPDVVSL-SELLYGRHSRVVFIGSTLFALQQLSGINAVFYFSSTVFKSAGV 325
Query: 355 DKE-GRQKLLIGSYLGMAISMLLV 377
+ G + + + LG I+M+L+
Sbjct: 326 PSDLGNIFVGVSNLLGSVIAMVLM 349
|
|
| TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 133/348 (38%), Positives = 207/348 (59%)
Query: 77 GFDLG---WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIF 133
G D G W + PHVL+AS+++ LFGYH+GV+N + SI+ +LGF GN I EGLVVS
Sbjct: 43 GKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTC 102
Query: 134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGV 193
+ GAF+GS+ SG +AD +G RR FQ+ +P+I+GA +SA SL ML GRFLVG+G+G+
Sbjct: 103 LGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGI 162
Query: 194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLP 253
+ +Y++EV+P RG+ G+ Q+ TC+G++ SLF GIPA+D+ WWR +I+++P
Sbjct: 163 GPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVP 222
Query: 254 GFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD-GSDLD 312
+LA+ M+ VESP+WL K G +A+AV L G S + A+ E ++K D G D D
Sbjct: 223 AAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAE---LVKSDRGDDAD 279
Query: 313 S-QWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMA 371
S + SELL RV FIG S L + +G Y ++ + + +
Sbjct: 280 SAKLSELLFGRSFRVVFIG-----STLFALQQLSGINAVFYFSSTVFKKAGVPSASANIC 334
Query: 372 ISMLLVVGAT-SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIP 418
+ + ++G+T ++ L + + ++G+ F ++G + +P
Sbjct: 335 VGVCNLLGSTVAVVLMDKLGRKVLLIGS-FAGMAVSLGLQAIAYTSLP 381
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| TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 131/356 (36%), Positives = 209/356 (58%)
Query: 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGS 146
P V +A + LFGYH+GV+NG + +AK+LG N +L+G +VS +AGA VGS + G+
Sbjct: 107 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGA 166
Query: 147 LADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206
LADK G RTFQ+D IPL +GA + A A S+ M+ GR L G+GIG+++ +VP+YISE++
Sbjct: 167 LADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEIS 226
Query: 207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266
PT+ RG+LG++ Q+ C+GI+ +L G+P +P WWRTM +A +P +LA+GM F+ E
Sbjct: 227 PTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPE 286
Query: 267 SPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326
SPRWL + G +++A+ I L+G+ + + + + + S+ ++ W +L + +V
Sbjct: 287 SPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLS-ASGQGSSEPEAGWFDLFSSRYWKV 345
Query: 327 AFIGDGA-LASLLVG---VTNFAGALCASYLMDKEGRQKLLIGS--YLGMAISMLLV--V 378
+G L L G V ++ ++ S + + L+G+ G A++ L+ +
Sbjct: 346 VSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKM 405
Query: 379 GATSLPLDEDFSHNLSILGTLFYIFTF-AIGA--GP--VTGLVIPELSSNRTRGKI 429
G SL L LS+L L FT+ A+ A G V G V+ LS + G +
Sbjct: 406 GRKSLLLTSFGGMALSML-LLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPV 460
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| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 9.9e-43, Sum P(3) = 9.9e-43
Identities = 86/250 (34%), Positives = 131/250 (52%)
Query: 71 DQKA-EEGFDLGWLPAFPHVL----IASMSNFLFGYHIGVMNGPIVSIAKEL-GFEGNPI 124
D+ A +E F L W P+VL A + LFGY GV++G ++ I + + N
Sbjct: 11 DESAFKECFSLTWKN--PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTW 68
Query: 125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR 184
L+ ++VS+ +AGA VG+ G DKLG R + +LGAII A A + ++ GR
Sbjct: 69 LQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGR 128
Query: 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244
VGLG+G+ ++ P+YISE +P K RG+L + G S + + D WR
Sbjct: 129 VFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWR 188
Query: 245 TMLYIASLPGFILALGMQFTV-ESPRWLCKGGMLNDAKAVIANLWG----ESEINKAIEE 299
ML IA +P +L + FT+ ESPRWL + G +AKA++ ++ E EI +
Sbjct: 189 WMLGIAGIPA-LLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDS 247
Query: 300 FQLVIKKDGS 309
+ I ++GS
Sbjct: 248 VETEILEEGS 257
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| TAIR|locus:2094034 PMT5 "polyol/monosaccharide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 70/205 (34%), Positives = 115/205 (56%)
Query: 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISS 144
AF ++ASM++ L GY IGVM+G ++ I ++L N + G++ + +GS ++
Sbjct: 36 AFACAILASMTSILLGYDIGVMSGAMIYIKRDLKI--NDLQIGILAGSLNIYSLIGSCAA 93
Query: 145 GSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISE 204
G +D +G R T + GAI+ + + +++GRF+ G+G+G ++ P+Y +E
Sbjct: 94 GRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAE 153
Query: 205 VAPTKYRGSLGTLCQV----GTCLGIITSL-FLGIPAEDDPHWWRTMLYIASLPGFILAL 259
V+P RG L + +V G LG +++L F +P + WR ML I ++P ILA+
Sbjct: 154 VSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVG---WRLMLGIGAVPSVILAI 210
Query: 260 GMQFTVESPRWLCKGGMLNDAKAVI 284
G+ ESPRWL G L DAK V+
Sbjct: 211 GVLAMPESPRWLVMQGRLGDAKRVL 235
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| UNIPROTKB|P0AEP1 galP "galactose:H+ symporter" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 6.0e-40, Sum P(2) = 6.0e-40
Identities = 80/244 (32%), Positives = 134/244 (54%)
Query: 91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK 150
+A+++ LFG IGV+ G + IA E F+ + VVS + GA VG++ SG L+ K
Sbjct: 21 LAALAGLLFGLDIGVIAGALPFIADE--FQITSHTQEWVVSSMMFGAAVGAVGSGWLSFK 78
Query: 151 LGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY 210
LG +++ I I + G++ SA A +++ ++ R L+GL +GV + P+Y+SE+AP K
Sbjct: 79 LGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKI 138
Query: 211 RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRW 270
RGS+ ++ Q+ +GI+ + +L A WR ML + +P +L +G+ F +SPRW
Sbjct: 139 RGSMISMYQLMITIGILGA-YLSDTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRW 197
Query: 271 LCKGGMLNDAKAVIANLWGES-EINKAIEEFQ--LVIKKDGSDLDSQWSELLEEPHSRVA 327
DA+ V+ L S E + ++E + L +K+ G W+ E + R A
Sbjct: 198 FAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSG------WALFKENSNFRRA 251
Query: 328 -FIG 330
F+G
Sbjct: 252 VFLG 255
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| UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 5.3e-39, Sum P(3) = 5.3e-39
Identities = 84/291 (28%), Positives = 147/291 (50%)
Query: 45 VLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVL--IASMSNFLFGYH 102
+LAA + L+S G L R A F PAF +V+ +++ FLFGY
Sbjct: 41 LLAAAESSTSLQSAGAGGGGVGDLER--AARRQFQQDETPAFVYVVAVFSALGGFLFGYD 98
Query: 103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162
GV++G ++ + ++L + + + L+VS + A V +++ G+L G R + +
Sbjct: 99 TGVVSGAMLLLKRQLSLDA--LWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASA 156
Query: 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGT 222
G+ + A A++ + +L GR +VGLGIG+ ++ VP+YI+EV+P RG L T+ +
Sbjct: 157 LFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFI 216
Query: 223 CLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK 281
G S+ G + WR ML +A++P I G F ESPRWL + G A+
Sbjct: 217 TGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKAR 276
Query: 282 AVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS---ELLEEPHSRVAFI 329
+++ + G I++ + + I+++ ++ S +L P +R A I
Sbjct: 277 RILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALI 327
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| UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 8.1e-39, Sum P(3) = 8.1e-39
Identities = 76/265 (28%), Positives = 137/265 (51%)
Query: 71 DQKAEEGFDLGWLPAFPHV--LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGL 128
++ A F PAF +V + +++ FLFGY GV++G ++ + ++L + + + L
Sbjct: 69 ERAARRQFQQDETPAFVYVAAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDA--LWQEL 126
Query: 129 VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVG 188
+VS + A V +++ G+L G R + + G+ + A A + + +L GR +VG
Sbjct: 127 LVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFAAGSAVLAAAGNRETLLAGRLVVG 186
Query: 189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG-IITSLFLGIPAEDDPHWWRTML 247
LGIG+ ++ VP+YI+EV+P RG L T+ + G S+ G + WR ML
Sbjct: 187 LGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYML 246
Query: 248 YIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD 307
+A++P I G F ESPRWL + G A+ +++ + G I++ + + I+++
Sbjct: 247 GLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEE 306
Query: 308 GSDLDSQWS---ELLEEPHSRVAFI 329
++ S +L P +R A I
Sbjct: 307 EKEVGSAGPVIYRMLSYPPTRRALI 331
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| TAIR|locus:2046333 AT2G18480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 80/263 (30%), Positives = 130/263 (49%)
Query: 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISS 144
AF ++AS+ + +FGY GVM+G + I +L I ++ I A VGS+++
Sbjct: 22 AFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQI--EVLAGILNLCALVGSLTA 79
Query: 145 GSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISE 204
G +D +G R T + + ++G+++ + ++ GR + G+G+G ++ P+Y +E
Sbjct: 80 GKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPVYSAE 139
Query: 205 VAPTKYRG---SLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260
++ +RG SL LC +G LG +++ G WR ML IA+ P ILA G
Sbjct: 140 ISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLK--LGWRLMLGIAAFPSLILAFG 197
Query: 261 MQFTVESPRWLCKGGMLNDAKAV---IANLWGESE-----INKAIEEFQLVIKKDGSDLD 312
+ ESPRWL G L +AK + ++N E+E I A E IK+ G +
Sbjct: 198 ITRMPESPRWLVMQGRLEEAKKIMVLVSNTEEEAEERFRDILTAAEVDVTEIKEVGGGVK 257
Query: 313 ------SQWSELLEEPHSRVAFI 329
S W EL+ +P V I
Sbjct: 258 KKNHGKSVWRELVIKPRPAVRLI 280
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WVE9 | PLST1_ARATH | No assigned EC number | 0.7301 | 0.8707 | 0.8358 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.1__448__AT1G05030.1 | annotation not avaliable (521 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | Al_scaffold_0003_483 | annotation not avaliable (221 aa) | • | 0.439 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 503 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-79 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-69 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 5e-41 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-32 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-19 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 4e-15 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-13 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 8e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-05 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 1e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.001 | |
| PRK10504 | 471 | PRK10504, PRK10504, putative transporter; Provisio | 0.001 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 0.002 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 0.002 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 0.002 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 0.003 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 1e-79
Identities = 144/447 (32%), Positives = 231/447 (51%), Gaps = 44/447 (9%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGF---------EGNPILEGLVVSIFIAGAFV 139
L+A++ FLFGY GV+ + I F + +L GL+VSIF G +
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 140 GSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVL 197
GS+ +G L D+ G +++ I + ++GA++ A S ++ GR +VGLG+G +VL
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121
Query: 198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITS--LFLGIPAEDDPHWWRTMLYIASLPGF 255
VP+YISE+AP K RG+LG+L Q+G GI+ + + LG+ + WR L + +P
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 256 ILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW 315
+L +G+ F ESPRWL G L +A+AV+A L G S++++ I+E + +++ + W
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241
Query: 316 SELLEEPHSRVAFI------------------------------GDGALASLLVGVTNFA 345
EL R + D L +++VGV NF
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301
Query: 346 GALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF 405
A +L+D+ GR+ LL+ GMAI L++ A + ++I+ L +I F
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFF 361
Query: 406 AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFG 465
A+G GPV +++ EL R K M + + +W+ NFL+G F + G V+ F
Sbjct: 362 ALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG-GYVFLVFA 420
Query: 466 GVSLLSALFAYYFIVETKGRSLEEIEM 492
G+ +L LF ++F+ ETKGR+LEEI+
Sbjct: 421 GLLVLFILFVFFFVPETKGRTLEEIDE 447
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 2e-69
Identities = 142/456 (31%), Positives = 232/456 (50%), Gaps = 50/456 (10%)
Query: 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP------ILEGLVVSIFIAGAF 138
LIA++ +FGY GV+ G + A E F L GLVVSIF+ G F
Sbjct: 26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGF 85
Query: 139 VGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH---SLDEMLWGRFLVGLGIGVNT 195
+G++ +G L+D+ G +++ I + ++GAI+ A S++ ++ GR L+G+G+G+ +
Sbjct: 86 IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIAS 145
Query: 196 VLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH--WWRTMLYIASLP 253
LVP+Y+SE+AP RG+L +L Q+ GI+ + G + WR L + +P
Sbjct: 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP 205
Query: 254 GFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD----GS 309
+L LG+ F ESPRWL G + +A+ +A L G S +K + + +I
Sbjct: 206 AGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR 265
Query: 310 DLDSQWSELLEEPHS--RVAFIG-------------------------------DGALAS 336
+ W L R F+G L S
Sbjct: 266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVS 325
Query: 337 LLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL--VVGATSLPLDEDFSHNLS 394
++VG NFA A +L+D+ GR+ LL+ GMAI + + ++GA+ + S N++
Sbjct: 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVA 385
Query: 395 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 454
I+ L +I FA+G GPV +++ E+ R K + + + +W+ NF+VG F ++E+
Sbjct: 386 IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES 445
Query: 455 FGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI 490
GV V+ FGG+++L +F Y+F+ ETKGR+LEEI
Sbjct: 446 IGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-41
Identities = 118/469 (25%), Positives = 196/469 (41%), Gaps = 79/469 (16%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSI------AKELGFEGNPILEGLVVSIFIAGAFVGSI 142
L+A++ LFGY V++G + S+ + L L G V+ + G +G
Sbjct: 14 TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73
Query: 143 SSGSLADKLGCRRTFQIDTIPLILGAIISA--------QAHSLDEMLWG----RFLVGLG 190
G +++ G R + +I + + A+ SA + R + G+G
Sbjct: 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133
Query: 191 IGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL--GIPAEDDPHW-----W 243
+G+ ++L P+YI+E+AP RG L + Q G + F+ I D W W
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193
Query: 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303
R M ++P + + + F E+PR+L G A+ ++ + G + +A++E
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI--- 250
Query: 304 IKKDGSDLDSQWSELLEEPHSRVAFIG-------------------------------DG 332
K D + L V IG
Sbjct: 251 --KHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA 308
Query: 333 ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHN 392
L +++VGV N + A +DK GR+ L I LGMAI M + A F
Sbjct: 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA--------FYTQ 360
Query: 393 ----LSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF 448
+++L LFY+ FA+ GPV +++ E+ N RGK + + + W+ N+ V F
Sbjct: 361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTF 420
Query: 449 ------LDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIE 491
LV F Y +G + +L+ALF + F+ ETKG++LEE+E
Sbjct: 421 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 4e-32
Identities = 101/392 (25%), Positives = 161/392 (41%), Gaps = 41/392 (10%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
+L+ + FL G G+++ + +A++LG + GL+VS F G +GS+ +G L+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58
Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
D+ G RR + + LG+++ A A SL +L GRFL+GLG G I+E P
Sbjct: 59 DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118
Query: 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268
K RG L G LG + LG + WR + I ++ G +LAL + F
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLG-GLLAESLGWRWLFLILAILGLLLALLLLFL---L 174
Query: 269 RWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328
R L + A +G + + + ++ L + +
Sbjct: 175 RLLLLLAL-----AFFLLSFGYY----GLLTYLPLYLQEVLGLSAAEA------------ 213
Query: 329 IGDGALASLLVGVTNFAGALCASYLMDKEGR-QKLLIGSYLGMAISMLLVVGATSLPLDE 387
L L G+ GAL L D+ GR + LL+ L A+ +LL+ A SL L
Sbjct: 214 ----GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL-- 267
Query: 388 DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF 447
+L L + A P + EL+ RG G + + L L
Sbjct: 268 -------LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL 320
Query: 448 FLDLVETFGVAPVYAGFGGVSLLSALFAYYFI 479
L++T G V+ ++LL+AL
Sbjct: 321 AGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-19
Identities = 102/397 (25%), Positives = 162/397 (40%), Gaps = 56/397 (14%)
Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
L S F G +GS G L+D+ G ++ + T+ + +++A + + L R L
Sbjct: 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189
Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246
VG+GIG V + +E P K R +GTL QV LG++ L + A P WR +
Sbjct: 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV---LLPLVAYFIPD-WRWL 245
Query: 247 LYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKK 306
SLP F+ L F ESPRWL G + +A ++ + + E L ++K
Sbjct: 246 QLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK 305
Query: 307 DGSDLDSQWS--ELLEEPHSRVAFI------------------------GDGALASLLVG 340
D S Q+S +L P+ R + G+ L + G
Sbjct: 306 DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISG 365
Query: 341 VTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF 400
+ L L+D+ GR+ + S L +++LL++ +P+D + L +
Sbjct: 366 LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL---FVPVD---LYFLRTALAVL 419
Query: 401 YIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL--VG------LFFLDLV 452
F A + L EL R +G VC+ + VG L +L
Sbjct: 420 GKF-GITSAFQMVYLYTAELYPTVVRNLGVG-------VCSTMARVGSIISPFLVYLGEK 471
Query: 453 ETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEE 489
F FGG++LL+ + F+ ETKG L E
Sbjct: 472 WLF---LPLVLFGGLALLAGILT-LFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 79/373 (21%), Positives = 139/373 (37%), Gaps = 56/373 (15%)
Query: 100 GYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI 159
GY + M +I+ E G + P+ G + S + G G++ G LAD++G RR
Sbjct: 30 GYDLAAMGFAAPAISAEWGLD--PVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLW 87
Query: 160 DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ 219
+ + ++ A A ++ ++L RFL GLG+G + +SE AP ++RG+ L
Sbjct: 88 SILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMF 147
Query: 220 VGTCLGIITSLFLG---IPAEDDPHWWRTMLYIASL-PGFILALGMQFTVESPRWLCKGG 275
G +G FL IP WR++ Y+ + P +L L M+F ES +L
Sbjct: 148 CGYPIGAAVGGFLAGWLIPV----FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203
Query: 276 MLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI------ 329
+ I N +A G+ L + +R+ +
Sbjct: 204 --PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF-KALFQGKTARITVLLWLLYF 260
Query: 330 ---------------------GDGALASLLVGVTNFAGAL---CASYLMDKEGRQKLLIG 365
+LA+ + NF G + +L D+ G + +
Sbjct: 261 MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALL 320
Query: 366 SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL--VIPELSSN 423
LG ++L+ S L +LG + F G +GL ++
Sbjct: 321 LLLGAVFAVLVGSTLFS-------PTLLLLLGAIAGFFV----NGGQSGLYALMALFYPT 369
Query: 424 RTRGKIMGFSFSV 436
R +G++ +
Sbjct: 370 AIRATGVGWAIGI 382
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 73/351 (20%), Positives = 126/351 (35%), Gaps = 17/351 (4%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
+ +A+ L +G +A++LG I GL+++ F G + +G L+
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56
Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
D+ G RR I + LG ++ A SL +L R L GLG G I++ P
Sbjct: 57 DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116
Query: 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA-LGMQFTVES 267
+ RG L G LG LG WR I ++ + A L
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLG-GLLASLFGWRAAFLILAILALLAAVLAALLLPRP 175
Query: 268 PRWLCKGGMLNDAKAVIANLWGESEINKAIE-EFQLVIKKDGSDLDSQWSELLEEPHSRV 326
P + +A A + W + + L++ + L +E
Sbjct: 176 PPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLS 235
Query: 327 AFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD 386
A + L L G+ G L L D+ GR++ L+ + L + ++ L + +
Sbjct: 236 ALL--AGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS----- 288
Query: 387 EDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSV 436
+ + L + F G P ++ +L+ RG G +
Sbjct: 289 --LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTA 337
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 65/270 (24%), Positives = 111/270 (41%), Gaps = 23/270 (8%)
Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
G S I G G++ G LAD++G +R + L ++ +AQA +L R L
Sbjct: 53 GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112
Query: 187 VGLGIGVNTVLVPIYI---SEVAPTKYRGSLGTLCQVGT-CLGIITSLFLGIPAEDDPHW 242
G+G+G +P I SE + RG+ +L G G + S+ + A D
Sbjct: 113 TGVGLG---GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-- 167
Query: 243 WRTMLYIASL-PGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQ 301
WR + Y+ + P ++ L M++ ES + G V+ L+GE +A
Sbjct: 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEG---RATATLL 224
Query: 302 LVIKKDGSDLDS----QW--SELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMD 355
L I + + W S L+ + SR L + + G+L LMD
Sbjct: 225 LWISYFFTLIVLYFLLNWLPSLLVGQGLSRS----QAGLVQIAFNIGGALGSLLIGALMD 280
Query: 356 KEGRQKLLIGSYLGMAISMLLVVGATSLPL 385
+ +++++ Y G+ S+ + A S
Sbjct: 281 RLRPRRVVLLIYAGILASLAALAAAPSFAG 310
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 3/181 (1%)
Query: 80 LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFV 139
L L +L+ +++ FL + + + +E+ GL++S+F G +
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLS-AAEAGLLLSLFGLGGIL 226
Query: 140 GSISSGSLADKLGCRRTFQIDTIPL-ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLV 198
G++ G L+D+LG RR + + L LG ++ A A SL +L L+G G+G +
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258
SE+AP + RG+ L LG L D + + I + + A
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL-LDTGGYGGVFLILAALALLAA 345
Query: 259 L 259
L
Sbjct: 346 L 346
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
Query: 126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185
+G++ I G VG+ G LADKLG ++ I A S+ L+ R
Sbjct: 204 KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRL 263
Query: 186 LVGLGIGVNTVLVPIYISEVAPTKYRGS-LGTLCQVGTCLGIITSLF-----------LG 233
L G GIG +V Y +E + RG L LC GI +
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323
Query: 234 IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
+ + H WR + + + P + F ESPR+ + G ++A ++
Sbjct: 324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMIL 374
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 10/167 (5%)
Query: 69 SRDQKAEEGFDLGWLPAF-----PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP 123
S+ K E +PA+ VL ++ LFG+ + + + LG +
Sbjct: 179 SKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL--SA 236
Query: 124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183
+L GL++ + +G + G L+D+LG RR + + LIL A+ A + LW
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 184 R---FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII 227
L+G G G+ + +S++AP + RG+ L LG
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA 343
|
Length = 346 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 44.3 bits (103), Expect = 1e-04
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 8/191 (4%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
+L +++ L G +G+++ + + L +L GL++S F G +GS+ +G L
Sbjct: 4 LLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLG 63
Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLD--EMLWGRFLVGLGIGVNTVLVPIYISEVA 206
D+ G R+ I + +LG ++ A A ++ +L R L GLG G + +SE
Sbjct: 64 DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123
Query: 207 PTKYRGSL------GTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260
P L +G LG + + L + + L IL L
Sbjct: 124 PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLL 183
Query: 261 MQFTVESPRWL 271
+ + +PR
Sbjct: 184 LDLLLAAPRLP 194
|
Length = 338 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 19/163 (11%)
Query: 334 LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 393
L + A L D+ GR+++L+ L A+ +LL++ A+SL
Sbjct: 36 LLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW--------- 86
Query: 394 SILGTLFYIFTFAIGAG-----PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF 448
L + G G P +I + RG+ +G + + L L
Sbjct: 87 -----LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLG 141
Query: 449 LDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIE 491
L FG + ++LL+A+ A + S
Sbjct: 142 GLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKP 184
|
Length = 346 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 3/140 (2%)
Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
G +++ + G +G+ L +L RR I+ ++SA A S +L R L
Sbjct: 51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110
Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-WRT 245
GL GV + + + P RG L G L + + LG + WR
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ--LFGWRA 168
Query: 246 MLYIASLPGFILALGMQFTV 265
++ + L + +
Sbjct: 169 TFLAIAVLALLALLLLWKLL 188
|
Length = 394 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 14/171 (8%)
Query: 318 LLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 377
L V+ + L L G+ F G L L D+ G ++ LI + L +A+++L
Sbjct: 238 LESVAGFSVSAVS---LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA- 292
Query: 378 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH 437
L + ++ L +++ FA + + +
Sbjct: 293 -----LTF---TGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAF 344
Query: 438 WVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 488
+ L +++ G A G LL AL R+
Sbjct: 345 NLGIALGAALGGLVLDALGYAAT-GWVGAALLLLALLLALLSARKDRRTAA 394
|
Length = 394 |
| >gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164
++N + S+A+ LG +P+ +V+ ++ V +SG LAD++G R F +
Sbjct: 28 IVNTALPSMAQSLG--ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLF 85
Query: 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200
LG++ A + +L+E+L R L G+G ++VP+
Sbjct: 86 TLGSLFCALSGTLNELLLARVLQGVG---GAMMVPV 118
|
Length = 471 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 27/107 (25%), Positives = 47/107 (43%)
Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
GL+++ + G + S SG L D+ G + + +L + A + ++ ++ RFL
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
G G V I+++ P + RG L G LG + LG
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG 107
|
Length = 141 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSIS 143
VL+ S+ FL+G+ I +N ++ KE+ F+ L+ F G F+ S+
Sbjct: 11 VKLAFVLLTSLF-FLWGF-ITCLNDILIPHLKEV-FDLTYFEASLIQFAFFGGYFIMSLP 67
Query: 144 SGSLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200
+G L KLG + + + +GA + +A + S L F++ GIG+
Sbjct: 68 AGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANP 127
Query: 201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
Y++ + + L Q LG I LG
Sbjct: 128 YVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG 160
|
Length = 422 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 26/193 (13%)
Query: 111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170
+ ++LG G V S F G VG G L D+ G R+T + +++ +
Sbjct: 18 PMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTL---AVFIVIWGVF 72
Query: 171 SAQAHSLDEMLWG----RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG- 225
+ + R L+G + + ++ P R + ++ LG
Sbjct: 73 TG-LQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131
Query: 226 -IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV----ESPRWLCK------- 273
I L I W+ I + G I + + + +WL +
Sbjct: 132 IIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVV 188
Query: 274 GGMLNDAKAVIAN 286
GG+L + + +
Sbjct: 189 GGLLAEQQGKGPS 201
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 121 GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-------IDTIPLILGAIISAQ 173
+ V G G + G LADKLG +R + I T+ L S +
Sbjct: 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPK 112
Query: 174 AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSL 214
+ W RF +G+GIG + L I SE A K+RG++
Sbjct: 113 SVMATLCFW-RFWLGVGIGGDYPLSAIITSEFATKKWRGAM 152
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 3/127 (2%)
Query: 119 FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178
F+ + L+GL++S G + I G LA K + + I + +I+ A
Sbjct: 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130
Query: 179 EML--WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL-GIP 235
L + R + GL G + I + AP K R L + G LG L + G
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190
Query: 236 AEDDPHW 242
E W
Sbjct: 191 CESWGGW 197
|
[Transport and binding proteins, Anions]. Length = 465 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 503 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.98 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.98 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.98 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.98 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.98 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.92 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.91 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.85 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.85 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.84 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.83 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.82 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.81 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.8 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.8 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.78 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.77 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.76 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.73 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.69 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.67 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.67 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.62 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.61 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.58 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.58 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.58 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.57 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.57 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.56 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.55 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.54 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.54 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.52 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.5 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.49 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.49 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.49 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.47 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.45 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.45 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.44 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.43 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.43 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.42 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.4 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.4 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.39 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.39 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.38 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.38 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.38 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.37 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.36 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.35 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.34 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.33 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.32 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.32 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.3 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.29 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.29 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.29 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.28 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.28 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.28 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.28 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.27 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.27 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.27 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.22 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.21 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.19 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.19 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.19 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.19 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.19 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.19 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.18 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.18 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.18 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.18 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.17 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.17 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.17 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.17 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.16 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.16 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.16 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.15 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.15 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.14 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.14 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.13 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.12 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.12 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.12 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.11 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.11 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.1 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.09 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.09 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.08 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.08 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.08 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.08 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.07 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.07 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.04 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.04 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.03 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.03 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.03 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.02 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.99 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.99 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.99 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.98 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.98 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.92 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.91 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.89 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.86 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.85 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.83 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.83 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.82 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.81 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.81 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.78 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.77 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.75 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.74 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.73 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.71 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.68 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.67 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.66 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.62 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.62 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.6 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.58 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.56 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.55 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.55 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.52 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.52 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.47 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.45 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.44 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.43 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.41 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.36 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.36 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.17 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.16 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.09 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.09 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.08 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.03 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.77 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.75 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.73 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.71 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.63 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.6 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.48 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.45 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.42 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.35 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.08 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.03 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.97 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.71 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.69 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.48 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.48 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.06 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.74 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.73 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.72 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 94.99 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.25 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 93.44 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.42 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.4 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 93.32 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 92.57 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.23 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 92.07 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.31 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 88.38 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 87.43 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 87.18 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 86.89 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 85.28 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 85.22 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 83.42 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=305.79 Aligned_cols=409 Identities=31% Similarity=0.537 Sum_probs=338.4
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhH--------HHhhCCCCCch----HHHHHHHHHHHHHHHHHHhhhhhhhhhcch
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSI--------AKELGFEGNPI----LEGLVVSIFIAGAFVGSISSGSLADKLGCR 154 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~~~~~~----~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 154 (503)
.....++++.+-.+|..+.+++..+.+ .+.+|...++. ..+.+.+++.+|.++|+++.|+++||+|||
T Consensus 11 ~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK 90 (485)
T KOG0569|consen 11 LAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRK 90 (485)
T ss_pred HHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 335556666678888888887776544 34455333443 457788999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHH
Q 010721 155 RTFQIDTIPLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF 231 (503)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 231 (503)
..++++.++..++.++..++ ++++.++++|++.|+..|......+.++.|..|++.||....+.+.+..+|.+++..
T Consensus 91 ~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~ 170 (485)
T KOG0569|consen 91 NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQV 170 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877765 899999999999999999999999999999999999999999999999999999977
Q ss_pred hhc--cCCCCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHh-cCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcC
Q 010721 232 LGI--PAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCK-GGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDG 308 (503)
Q Consensus 232 ~~~--~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (503)
++. .+.+... |++.+.+..+++++..+...++||+|+|+.. +++++++++.++.+++..+.....+......+...
T Consensus 171 ~~l~~ilGt~~~-W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~ 249 (485)
T KOG0569|consen 171 LGLPSLLGTEDL-WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEE 249 (485)
T ss_pred HccHHhcCCCcc-hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhc
Confidence 764 3334444 9999999999999999999999999999987 89999999999999988776666555444443332
Q ss_pred CC--CcccchhhhccCccccchhhh--------------------------------HHHHHHHHHHHHHHHHHhHHHhh
Q 010721 309 SD--LDSQWSELLEEPHSRVAFIGD--------------------------------GALASLLVGVTNFAGALCASYLM 354 (503)
Q Consensus 309 ~~--~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~g~l~ 354 (503)
.. ...++.++++++..+...... +.+.....++..++..+++.++.
T Consensus 250 ~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~li 329 (485)
T KOG0569|consen 250 LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLI 329 (485)
T ss_pred cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 557788888887766542221 56778888999999999999999
Q ss_pred cccCCchHHHhhHHHHHHHHHHHHHHhcCCCCc-chhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHH
Q 010721 355 DKEGRQKLLIGSYLGMAISMLLVVGATSLPLDE-DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS 433 (503)
Q Consensus 355 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 433 (503)
||+|||++++.+..++.+..+++.......... .+..+..+...+++...+..|.+|+.+.+.+|++|++.|..+.++.
T Consensus 330 d~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~ 409 (485)
T KOG0569|consen 330 DRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVA 409 (485)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHH
Confidence 999999999999998888877776654322111 1222344567778888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhccC
Q 010721 434 FSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 497 (503)
Q Consensus 434 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (503)
..+.++..++....+..+.+..|. ..|+.+.+.+.+..++.++.+||||+|+..|+.++.+++
T Consensus 410 ~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 410 TAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 999999999999999999999996 788899999999999999999999999999988877655
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=327.12 Aligned_cols=390 Identities=19% Similarity=0.230 Sum_probs=292.7
Q ss_pred CchHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhH
Q 010721 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (503)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 162 (503)
+..|..+++++++.+..+++...++..+|.+.+++++ +..+.+++.+++.++.+++++++|+++||+|||++++++++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gl--s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCI--PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4456677788888888899999999999999999999 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC----
Q 010721 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED---- 238 (503)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~---- 238 (503)
+.++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++.++..+|.++++.++..+..
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887644332
Q ss_pred ---------CCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcch-----HHH--HHHHHH
Q 010721 239 ---------DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI-----NKA--IEEFQL 302 (503)
Q Consensus 239 ---------~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 302 (503)
..+ ||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++.+.+.. ... ......
T Consensus 321 ~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~ 399 (742)
T TIGR01299 321 SFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399 (742)
T ss_pred hhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence 123 999999998888888888888999999999888888877777665433210 000 000000
Q ss_pred HHHh------c-CCC----------------CcccchhhhccCccccchh------------------------------
Q 010721 303 VIKK------D-GSD----------------LDSQWSELLEEPHSRVAFI------------------------------ 329 (503)
Q Consensus 303 ~~~~------~-~~~----------------~~~~~~~~~~~~~~~~~~~------------------------------ 329 (503)
.... . ... ....+..++..+....+++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~ 479 (742)
T TIGR01299 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADD 479 (742)
T ss_pred hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 000 0000000110000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010721 330 -------------------------------------------------------------------------------- 329 (503)
Q Consensus 330 -------------------------------------------------------------------------------- 329 (503)
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 559 (742)
T TIGR01299 480 YAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENT 559 (742)
T ss_pred HHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcccc
Confidence
Q ss_pred -----------------------------------hhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHH
Q 010721 330 -----------------------------------GDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISM 374 (503)
Q Consensus 330 -----------------------------------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 374 (503)
........+..++.+++.++.|+++||+|||+++.++.++.++++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ 639 (742)
T TIGR01299 560 DFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISC 639 (742)
T ss_pred chhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 012334556678889999999999999999999999888888887
Q ss_pred HHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 375 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 454 (503)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 454 (503)
+++.+... ...++...++..++..+..+...++++|.+|++.|++++|+.+....+|++++|.+.+.+.+.
T Consensus 640 ll~~~~~s---------~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 640 FFLSFGNS---------ESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI 710 (742)
T ss_pred HHHHHHcc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77665321 122222222333333345566788899999999999999999999999999999999988875
Q ss_pred cCCcchhHhHHHHHHHHHHHHHhhccCCCCCC
Q 010721 455 FGVAPVYAGFGGVSLLSALFAYYFIVETKGRS 486 (503)
Q Consensus 455 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (503)
+...+|++++++.++++++. .++||++++.
T Consensus 711 -~~~~pf~i~a~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 711 -TKAAPILFASAALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred -hhHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence 44567777777776666654 4568888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=315.52 Aligned_cols=405 Identities=27% Similarity=0.487 Sum_probs=299.8
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhh--------CCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKEL--------GFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT 156 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 156 (503)
....+++++++.+.++++...+++..|.+++++ +. +..+.+++.+++.++..++++++|+++||+|||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESA--ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 345577778889999999999999999999988 55 78899999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhh------------hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHH
Q 010721 157 FQIDTIPLILGAIISAQA------------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL 224 (503)
Q Consensus 157 l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 224 (503)
++++.++++++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888763 33567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCC--------CCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHH
Q 010721 225 GIITSLFLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKA 296 (503)
Q Consensus 225 G~~ig~~~~~~l~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (503)
|.+++++++..+. +..+ ||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++..........
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence 9999888765432 2345 999999988888877777778999998876666666655544444332222211
Q ss_pred HHHHHHHHHhcCCCCccc--c---------------------------hhhhccCccccchhhhHHHHHHHHHHHHHHHH
Q 010721 297 IEEFQLVIKKDGSDLDSQ--W---------------------------SELLEEPHSRVAFIGDGALASLLVGVTNFAGA 347 (503)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (503)
.................. + ..++....... ..........++..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~---~~~~~~~~~~~~~~~i~~ 323 (479)
T PRK10077 247 LQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST---DIALLQTIIVGVINLTFT 323 (479)
T ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC---chHHHHHHHHHHHHHHHH
Confidence 111111110000000000 0 00000000000 012334455677888999
Q ss_pred HhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccch
Q 010721 348 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRG 427 (503)
Q Consensus 348 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (503)
++.++++||+|||++++.+.++..++.+++....... ...........++..++.....|..+.+++|.+|++.|+
T Consensus 324 ~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 399 (479)
T PRK10077 324 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399 (479)
T ss_pred HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH
Confidence 9999999999999999999988888877765432211 111222333344444454445577789999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH------HHcCCcchhHhHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhccCCC
Q 010721 428 KIMGFSFSVHWVCNFLVGLFFLDLV------ETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANST 499 (503)
Q Consensus 428 ~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (503)
++.|+.+...++++++++.+.+.+. +..++...|++.++++++++++.+++.+|+|+++.+|.++..+++.+
T Consensus 400 ~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 477 (479)
T PRK10077 400 KALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETK 477 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhccc
Confidence 9999999999999999987776544 56778888888888888888877778899999998888877766544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=306.57 Aligned_cols=398 Identities=20% Similarity=0.247 Sum_probs=282.8
Q ss_pred chHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhC---CCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHH
Q 010721 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELG---FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQID 160 (503)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~ 160 (503)
..+..+.+++++.+.++++...++...|.+.+++. ...++.+.+++.+.+.+++.++++++|+++||+|||+++.++
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~ 92 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 34556778888999999999999999998877531 112566779999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhh------HHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhc
Q 010721 161 TIPLILGAIISAQAHS------LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI 234 (503)
Q Consensus 161 ~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 234 (503)
.++..++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|.++++.++.
T Consensus 93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998865 7899999999999999999999999999999999999999999999999999988875
Q ss_pred cCCC-----------------------CCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChH-HHHHHHHHHcCC
Q 010721 235 PAED-----------------------DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLN-DAKAVIANLWGE 290 (503)
Q Consensus 235 ~l~~-----------------------~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 290 (503)
.+.. ..+ ||+.|.+.++++++..+..+++||+|+|+..+++++ ++.+..++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~ 251 (502)
T TIGR00887 173 IVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV 251 (502)
T ss_pred HHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence 4321 124 999999999888888888888999999987766653 344444333211
Q ss_pred cch--HHHHHHHHHHHHhcCCCCcccchhhhcc----Cccccch-----------------------hh-----------
Q 010721 291 SEI--NKAIEEFQLVIKKDGSDLDSQWSELLEE----PHSRVAF-----------------------IG----------- 330 (503)
Q Consensus 291 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------------------~~----------- 330 (503)
+.. .+...... .... .....++++++. +...... +.
T Consensus 252 ~~~~~~~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~ 327 (502)
T TIGR00887 252 KIEAEPDEVEKAS---TAVE-VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATN 327 (502)
T ss_pred ccccCcccccchh---cccc-chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccch
Confidence 100 00000000 0000 000012222210 0000000 00
Q ss_pred --------hHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHH
Q 010721 331 --------DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYI 402 (503)
Q Consensus 331 --------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (503)
.......+..++.+++.++.++++||+|||++++.+..+..++++++....... ..........++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~ 402 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL-----STHGFLAIYVLAQ 402 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHH
Confidence 000012233445666888999999999999998888877776666655432100 0111112222222
Q ss_pred HHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCcchhHhHHHHHHHHH
Q 010721 403 FTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF----------GVAPVYAGFGGVSLLSA 472 (503)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~ 472 (503)
..+..+..+..+.+.+|.+|++.|+++.|+.+.+.+++++++|.+.+.+.+.. ++...|.+++++++++.
T Consensus 403 ~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (502)
T TIGR00887 403 FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGI 482 (502)
T ss_pred HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHH
Confidence 23345566777788899999999999999999999999999999999998843 34456777887777766
Q ss_pred HHHHhhccCCCCCCHHHHHH
Q 010721 473 LFAYYFIVETKGRSLEEIEM 492 (503)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~ 492 (503)
++ ++++||+|+++++|+++
T Consensus 483 i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 483 LF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred HH-heEeccCCCCCHHhhhC
Confidence 64 46779999998877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=299.95 Aligned_cols=403 Identities=33% Similarity=0.620 Sum_probs=295.3
Q ss_pred chHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCC------CCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHH
Q 010721 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE------GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF 157 (503)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l 157 (503)
+.+...+++.++.++..++...+.+.++.+..+++.+ .+..+.+++.+++.++..++++++|+++||+|||+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~ 104 (481)
T TIGR00879 25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL 104 (481)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Confidence 3444455666677888899999999999999999884 3488999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhh-
Q 010721 158 QIDTIPLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG- 233 (503)
Q Consensus 158 ~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~- 233 (503)
+++.++..++.+++.+. .+++.++++|+++|++.+...+...+++.|++|+++|++++++++.+..+|.+++++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 184 (481)
T TIGR00879 105 LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGS 184 (481)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998654 45568999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHH-H---HHHHHHHhc
Q 010721 234 --IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAI-E---EFQLVIKKD 307 (503)
Q Consensus 234 --~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~ 307 (503)
....+..+ ||+.|++.++..++.++..+++||+|++...+++.++..+..++....+...... . .........
T Consensus 185 ~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (481)
T TIGR00879 185 GKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIE 263 (481)
T ss_pred HhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 66666666 9999999777777777777788999877655555444433333322111100000 0 000000000
Q ss_pred CCCCcccchhhhccC----------------------------------ccccchhhhHHHHHHHHHHHHHHHHHhHHHh
Q 010721 308 GSDLDSQWSELLEEP----------------------------------HSRVAFIGDGALASLLVGVTNFAGALCASYL 353 (503)
Q Consensus 308 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 353 (503)
.......+..++... ...... ...+.......++.+++.++.+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l 342 (481)
T TIGR00879 264 KRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTFVAIFL 342 (481)
T ss_pred HhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011111100 000000 113466677788889999999999
Q ss_pred hcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCc--chhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHH
Q 010721 354 MDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDE--DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMG 431 (503)
Q Consensus 354 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 431 (503)
.||++||+.+..+.++..++.+++.+........ .......+....++..+++.+..+....+..|.+|++.|+++.|
T Consensus 343 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 422 (481)
T TIGR00879 343 VDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS 422 (481)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHH
Confidence 9999999998888777777766665322111000 00133334444555556666666777788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCCCCHH
Q 010721 432 FSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 488 (503)
Q Consensus 432 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (503)
+.+...++|++++|.+.+.+.+..|+...|++.++++++.+++.+++.+|+|+++.+
T Consensus 423 ~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 423 IAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 999999999999999999999999999999999988888888777777887766543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=279.88 Aligned_cols=385 Identities=18% Similarity=0.131 Sum_probs=284.7
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
++..++.+.+++...++.+..++.+.|.+.+|.++ |..|.|++.+.++++|.++.++.|.++||.++|..+.++++++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l--sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL--SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 45668888899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhh--ccCCCCCch
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG--IPAEDDPHW 242 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~--~~l~~~~~~ 242 (503)
++.+++++++++.+.+.++.+++|.++|...|.+...+..|++++|||+..++++++.++|..+.|++. +++..+.+
T Consensus 105 ai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~- 183 (448)
T COG2271 105 AIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG- 183 (448)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc-
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 78877776
Q ss_pred hHHHHHhhHHHHHHHHHHhcc-ccCChHHHHh------cCChHHHHH-------------HHHHHcCCcchHHHHHHHHH
Q 010721 243 WRTMLYIASLPGFILALGMQF-TVESPRWLCK------GGMLNDAKA-------------VIANLWGESEINKAIEEFQL 302 (503)
Q Consensus 243 wr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 302 (503)
||..|++.++++++..+..++ .+|+|+..-. +++..+..+ ..+...+++........ .
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a--~ 261 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALA--N 261 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHH--H
Confidence 999999999999888666554 7777753211 111101000 00001111111100000 0
Q ss_pred HHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhccc--CCchHHHhhHHHHHHHHHHHHHH
Q 010721 303 VIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKE--GRQKLLIGSYLGMAISMLLVVGA 380 (503)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~ 380 (503)
............|..++......... ..+....+.+-+++++|.++.||++||+ |||.+..+.+.+....+++..+.
T Consensus 262 vfvYivR~gi~dW~p~YL~e~k~~s~-~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~ 340 (448)
T COG2271 262 VFVYVVRYGINDWGPLYLSEVKGFSL-VKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWL 340 (448)
T ss_pred HHHHHHHHHHhhhHHHHHHHhcCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHc
Confidence 00000000012233322222111111 1266788899999999999999999996 56665554444333333333221
Q ss_pred hcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHcCCcc
Q 010721 381 TSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-CNFLVGLFFLDLVETFGVAP 459 (503)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~ 459 (503)
. + ..+......+...++++..+...+......|..|++..|++.|+...+.++ |...+....|++.|.+||..
T Consensus 341 ~--~----~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g 414 (448)
T COG2271 341 A--P----NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDG 414 (448)
T ss_pred C--C----CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcc
Confidence 1 1 123344444455555555666666677788999999999999999999998 88899999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHhhccC
Q 010721 460 VYAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~ 481 (503)
.|+++.+.++++.++.....+.
T Consensus 415 ~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 415 GFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 9998888888777766555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=269.29 Aligned_cols=374 Identities=19% Similarity=0.220 Sum_probs=282.6
Q ss_pred chHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHH
Q 010721 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (503)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 163 (503)
+.+..++.+.++.|..+....+....+|++.+|+|+ +..+.|++.|.|.+++.++.++...+.||+.||++++..+.+
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~v--s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGV--SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 345568889999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
+.++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+..| |
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-W 166 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-W 166 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhHHHHHHHHHHhcc-ccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccc-hhhhcc
Q 010721 244 RTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW-SELLEE 321 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 321 (503)
|+.|++.+.++++..+..+. +| |+.. .+.+..+.++..+.+++.......... ...........+| ..++.+
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~-~~~~~~~~~~~~~~l~~p~v~~~l~~t---~l~~~g~F~~ftYi~P~L~~ 240 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSEI-SGSLPGPLRTLLRLLRRPGVLLGLLAT---FLFMTGHFALYTYIRPFLES 240 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CccC-CCCCCcchhHHHHHhcCchHHHHHHHH---HHHHcchhhhHHhHHHHHHH
Confidence 99999999999888766654 77 1110 111112222222222222221111111 1111111111222 222222
Q ss_pred C-ccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Q 010721 322 P-HSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF 400 (503)
Q Consensus 322 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (503)
. .+... ...+....++++.++|..++|++.|| +.|+.+.....+..+..+.+.+... +........
T Consensus 241 v~g~s~~---~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~---------~~~~~~~~~ 307 (394)
T COG2814 241 VAGFSVS---AVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGA---------SPALALALL 307 (394)
T ss_pred ccCCCHh---HHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcc---------hHHHHHHHH
Confidence 1 12222 24577889999999999999999999 8888888877777777777665332 222233333
Q ss_pred HHHHHhcCcc-ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhc
Q 010721 401 YIFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFI 479 (503)
Q Consensus 401 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 479 (503)
+..++..... ........+.. ++.+..+.+++....++|..+|..++|.+.|+.|+....++.+.+.+++.++.....
T Consensus 308 ~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 308 FLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332 22233344433 467999999999999999999999999999999999888888888877777665444
Q ss_pred c
Q 010721 480 V 480 (503)
Q Consensus 480 ~ 480 (503)
+
T Consensus 387 ~ 387 (394)
T COG2814 387 R 387 (394)
T ss_pred h
Confidence 3
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=287.16 Aligned_cols=412 Identities=35% Similarity=0.630 Sum_probs=323.3
Q ss_pred hHHHHHHHHHHHHhhhhh--hcccchhhHhHHHhhCCCC---Cc--hHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHH
Q 010721 85 AFPHVLIASMSNFLFGYH--IGVMNGPIVSIAKELGFEG---NP--ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF 157 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l 157 (503)
.........++.+..+++ .+..++....+.++..... +. .+.+|+.+++.++..++++++|+++|++|||+.+
T Consensus 43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l 122 (513)
T KOG0254|consen 43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL 122 (513)
T ss_pred hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344456667777777776 5666777777776543211 12 3458999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC
Q 010721 158 QIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 237 (503)
+++.+++.++.+++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++....
T Consensus 123 ~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~ 202 (513)
T KOG0254|consen 123 LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS 202 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977766655
Q ss_pred CC-CchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcC--CcchHHHHHHHHHH-HHhcC-CCCc
Q 010721 238 DD-PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWG--ESEINKAIEEFQLV-IKKDG-SDLD 312 (503)
Q Consensus 238 ~~-~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~-~~~~ 312 (503)
+. .+ ||..+.+..+++++..+..+++||+|+|+.++++.+++++.++.+++ +.+........... ..... ....
T Consensus 203 ~~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
T KOG0254|consen 203 KVYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGK 281 (513)
T ss_pred cCCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccc
Confidence 43 24 99999999999999988888899999999999999999999998887 33333333222211 11111 1111
Q ss_pred ccchhhhccCccccchhhh-----------------------------H-HHHHHHHHHHHHHHHHhHHHhhcccCCchH
Q 010721 313 SQWSELLEEPHSRVAFIGD-----------------------------G-ALASLLVGVTNFAGALCASYLMDKEGRQKL 362 (503)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~-----------------------------~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 362 (503)
..+.+++.........++. . .....+.++..+++.++..++.||+|||++
T Consensus 282 ~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l 361 (513)
T KOG0254|consen 282 ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKL 361 (513)
T ss_pred ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 1244444322222222111 1 456677788888889999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCCC----cchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHH
Q 010721 363 LIGSYLGMAISMLLVVGATSLPLD----EDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHW 438 (503)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 438 (503)
++.+...+.++.+++......... .....+..+...+++...+..+..++.+.+.+|.+|.+.|+.+.++....++
T Consensus 362 ll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~ 441 (513)
T KOG0254|consen 362 LLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNW 441 (513)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHH
Confidence 999999999999988776544322 2234567777888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHH-HHHhhccCCCCCCHHHHHHHhccC
Q 010721 439 VCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL-FAYYFIVETKGRSLEEIEMSLNAN 497 (503)
Q Consensus 439 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 497 (503)
+...+-......+.+..+....|..+++++.+..+ ..++++||+|+++.+++++..++.
T Consensus 442 ~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 442 LWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 99988877777777765545567777777777766 788899999999999998876654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=300.75 Aligned_cols=365 Identities=24% Similarity=0.303 Sum_probs=274.2
Q ss_pred hhhHhHHHhhCCCCC---chHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHH
Q 010721 108 GPIVSIAKELGFEGN---PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR 184 (503)
Q Consensus 108 ~~~~~i~~~~~~~~~---~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 184 (503)
+..+.+.+|+++ + ..+.+++.+++.++.+++++++|+++||+|||++++++.++.+++.+++++++|++.++++|
T Consensus 110 ~~~~~i~~e~~l--~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTEWDL--VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cccccEEEEecc--eechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 567889999999 6 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccc
Q 010721 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (503)
Q Consensus 185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 264 (503)
++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+.+ ||+.|++.+++.++..+..+++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999877653 9999999998888887777889
Q ss_pred cCChHHHHhcCChHHHHHHHHHHcCCcchH--HHHHHHHHHHHhcCCCCcccchhhhccCccccchhhh-----------
Q 010721 265 VESPRWLCKGGMLNDAKAVIANLWGESEIN--KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGD----------- 331 (503)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 331 (503)
||+|+|+..+++.+++.+..++..+.+... ....................+.++++++..+...+..
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888777766655433221110 0000000000000001113445555555433322211
Q ss_pred -------------HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHH
Q 010721 332 -------------GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGT 398 (503)
Q Consensus 332 -------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (503)
........++..+++.++.+++.||+|||+.+.++.++.+++++++.+... .........
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~ 416 (505)
T TIGR00898 344 YGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-------DLYFLRTAL 416 (505)
T ss_pred HHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-------CchHHHHHH
Confidence 223344556777889999999999999999999888888777776655321 111122222
Q ss_pred HHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhh
Q 010721 399 LFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 478 (503)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 478 (503)
.++..+...+..+..+.+.+|.+|++.|+++.|+.+.+..+|++++|.+.+ + +..+...++.+++++.++++++. ++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~ 493 (505)
T TIGR00898 417 AVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT-LF 493 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH-Hc
Confidence 222222222334566788999999999999999999999999999999998 4 44556667777777777766654 56
Q ss_pred ccCCCCCCHH
Q 010721 479 IVETKGRSLE 488 (503)
Q Consensus 479 ~~~~~~~~~~ 488 (503)
++|+++++++
T Consensus 494 lpet~~~~l~ 503 (505)
T TIGR00898 494 LPETKGVPLP 503 (505)
T ss_pred CcCCCCCCCC
Confidence 7888876543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=290.52 Aligned_cols=390 Identities=15% Similarity=0.143 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchH--HHH--HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHh
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPIL--EGL--VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT 161 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~g~--~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~ 161 (503)
++.+...+++.++++++...++...|.+.++++.+.++.. .+. ..++.++++.++++++|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3456777889999999999999999999999976434321 222 257888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHH--------HHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhh
Q 010721 162 IPLILGAIISAQAHSLDE--------MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233 (503)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 233 (503)
++++++++++++++|+++ ++++|+++|++.|..++...++++|++|+++|+++.++.+.+..+|.++|+.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 788999999999999999999999999999999999999988888888887654
Q ss_pred ccC----C----CCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHH-HH--------HHHHHcCCcchHHH
Q 010721 234 IPA----E----DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDA-KA--------VIANLWGESEINKA 296 (503)
Q Consensus 234 ~~l----~----~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~ 296 (503)
..+ . ...+ ||+.|++.++++++.+++...+||+|++...+++.++. .+ ..+...+.. ....
T Consensus 175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 252 (490)
T PRK10642 175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKH-WRSL 252 (490)
T ss_pred HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHh-HHHH
Confidence 332 1 2345 99999998777666666666789998875432211110 00 011110000 0000
Q ss_pred HHHHHH-HHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHH
Q 010721 297 IEEFQL-VIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISML 375 (503)
Q Consensus 297 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 375 (503)
...... ............|...+......... ...........++.+++.++.|+++||+|||+.+..+.++..+..+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 331 (490)
T PRK10642 253 LTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSE-DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAI 331 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 000000 00000000001111111111111111 1133445666778889999999999999999988777654443332
Q ss_pred HHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010721 376 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF 455 (503)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 455 (503)
.+...... ...........+...+.+. .......+..|.+|++.|+++.|+.+....+++.++|.+.+++.+..
T Consensus 332 ~~~~~~~~-----~~~~~~~~~~~~~g~~~~~-~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~ 405 (490)
T PRK10642 332 PAFILINS-----NVIGLIFAGLLMLAVILNC-FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST 405 (490)
T ss_pred HHHHHHhC-----CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22111110 0111111121222221121 12234556778999999999999877777788899999999998876
Q ss_pred C-CcchhHhHHHHHHHHHHHHHhhccCCCCC
Q 010721 456 G-VAPVYAGFGGVSLLSALFAYYFIVETKGR 485 (503)
Q Consensus 456 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (503)
+ +...+++..+.+++..+. .++.||++++
T Consensus 406 ~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~ 435 (490)
T PRK10642 406 QNLMMPAYYLMVVAVIGLIT-GVTMKETANR 435 (490)
T ss_pred CCchHHHHHHHHHHHHHHHH-HHHhccccCC
Confidence 5 444454444455444443 3455776543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=280.23 Aligned_cols=378 Identities=21% Similarity=0.263 Sum_probs=270.8
Q ss_pred chHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHH
Q 010721 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (503)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 163 (503)
++|..+.++++..++++++....++..|.+.+++|. ++.+.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGL--DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 567778888889999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+..+ |
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~ 168 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-W 168 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988877777 9
Q ss_pred HHHHHhhHHHHHHHHH-HhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHH-HHHHHHhcCCCCcccch-hhhc
Q 010721 244 RTMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE-FQLVIKKDGSDLDSQWS-ELLE 320 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 320 (503)
|+.|++.+++.++..+ ...++||+|++..++.+.++.++..+...+.......... ...............|. .++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 248 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLV 248 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997776655544 3445788876543322211111111111111111000000 00000000000001111 1112
Q ss_pred cCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Q 010721 321 EPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF 400 (503)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (503)
+..... ...+.......++.+++.++.|++.||+++|+.+..+.+...++.+++... .....+....+
T Consensus 249 ~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 316 (406)
T PRK11551 249 GQGLSR---SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA---------PSFAGMLLAGF 316 (406)
T ss_pred hCCCCh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc---------CcHHHHHHHHH
Confidence 211111 124466777888999999999999999999998877666555554444331 11122222222
Q ss_pred HHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchhHhHHHHHHHHHHHHH
Q 010721 401 YIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAY 476 (503)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 476 (503)
+.+....+..+...++..|.+|+++|+++.|+.+...++|+.++|.+.|.+.+..+ +...+.....+.+++.++.+
T Consensus 317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 22222333456667888999999999999999999999999999999999998755 33444444444444444443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=272.90 Aligned_cols=370 Identities=15% Similarity=0.134 Sum_probs=260.8
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
+|..++.+.++.+..........+.+|.+.+++|. +..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHM--QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 44455666666666555555556678999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+.++|.+++|++++.+.+..+ ||
T Consensus 85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~ 163 (390)
T PRK03545 85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WR 163 (390)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887777 99
Q ss_pred HHHHhhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHH-HHHHHHHhcCCCCcccch-hhhcc
Q 010721 245 TMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE-EFQLVIKKDGSDLDSQWS-ELLEE 321 (503)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ 321 (503)
+.|++.++++++..+.. .++||.|+. + + +..+..++..+++....... ........... ..+. .++.+
T Consensus 164 ~~f~~~~~~~~l~~~~~~~~~~~~~~~---~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 234 (390)
T PRK03545 164 TTFLAIGGGALITLLLLIKLLPLLPSE---H--S-GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTA---YSYIEPFVQQ 234 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC---C--c-chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 99999888877665444 345654321 1 1 11112222222322211111 00000000000 1111 11111
Q ss_pred C-ccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Q 010721 322 P-HSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF 400 (503)
Q Consensus 322 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (503)
. .... ...+.......++.++++++.+++.||+++|... .+..+..++...+.... ++........+
T Consensus 235 ~~g~s~---~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~ 302 (390)
T PRK03545 235 VAGLSE---NFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA--------NSEWHLSVLSI 302 (390)
T ss_pred hcCCCc---cHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh--------chHHHHHHHHH
Confidence 1 1111 1244566777889999999999999999987654 34333333333322211 11222222222
Q ss_pred HHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhc
Q 010721 401 YIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFI 479 (503)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 479 (503)
+.+.......+.....+.+..| +.++++.|+.+...++|..+||.+.|.+.|..|++..|.+.+++.+++.++.+...
T Consensus 303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 2222222334445566667766 57899999999999999999999999999999999999888888877777665544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=285.09 Aligned_cols=381 Identities=13% Similarity=0.072 Sum_probs=257.4
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
.+..+.++++++++..+++..+++..|.+.+|+|+ +..+.|++.+++.+++.+++++.|+++||+|||+++.++.+++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGL--STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 34456677777778888999999999999999999 8999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHh-----hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 165 ILGAIISAQ-----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 165 ~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
+++.++.++ +++++.++++|+++|++.+...+...++++||+|+++|++++++++.+.++|.++++++..++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 887776665 589999999999999999999999999999999999999999999999999999999888665543
Q ss_pred C--chhHHHHHhhHHHHHHHHHHhc-cccCChHHHHhcCChH--------HHH----------HH-HHHHcCCcchHHHH
Q 010721 240 P--HWWRTMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLN--------DAK----------AV-IANLWGESEINKAI 297 (503)
Q Consensus 240 ~--~~wr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~----------~~-~~~~~~~~~~~~~~ 297 (503)
. ++||..|.+.+++.++..+..+ +.+++|+.......++ +.+ +. .+...+++......
T Consensus 185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (467)
T PRK09556 185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLC 264 (467)
T ss_pred hccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHH
Confidence 2 2399999888877776654444 4566654211000000 000 00 00001111000000
Q ss_pred HHHHHHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHH
Q 010721 298 EEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 377 (503)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 377 (503)
...............|...+......... ..++.......++.+++.++.|+++||+++|+.+.....+..++..++
T Consensus 265 --~~~~~~~~~~~~~~~~~p~yl~~~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~ 341 (467)
T PRK09556 265 --FANIFLYIVRIGIDNWSPVYAFQELGFSK-EDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLG 341 (467)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence 00000000000012223322211111111 124456677788899999999999999999887665544433332222
Q ss_pred HHHhcCCCCcchhhHHHHHHHHHHHHH-HhcCccccccccccccCCcccchhhHHHHHHHHHH-HHHHHHHHHHHHHH--
Q 010721 378 VGATSLPLDEDFSHNLSILGTLFYIFT-FAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-CNFLVGLFFLDLVE-- 453 (503)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~-- 453 (503)
..... ...... ...++..+ +..+..........|.+|++.+|++.|+.+...++ |++++|.+.|.+.|
T Consensus 342 ~~~~~-------~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~ 413 (467)
T PRK09556 342 VYQHA-------TSEYMY-LASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPT 413 (467)
T ss_pred HHHhc-------CcHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccc
Confidence 22110 111122 12222222 22222222235566999999999999999999997 77999999999999
Q ss_pred ----------HcCCcchhHhHHHHHHHHHHHHHhh
Q 010721 454 ----------TFGVAPVYAGFGGVSLLSALFAYYF 478 (503)
Q Consensus 454 ----------~~g~~~~~~~~~~~~~~~~~~~~~~ 478 (503)
..||...|.+..++++++.++.+..
T Consensus 414 ~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 414 KNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred ccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888877777766554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=277.25 Aligned_cols=362 Identities=15% Similarity=0.167 Sum_probs=256.4
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
+++.+..+.++.+.++++.....+..|.+++++|+ ++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL--TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 44557788888889999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
+++.++++++++++.++++|+++|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+.+.+..+ ||
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w~ 172 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WR 172 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888887777 99
Q ss_pred HHHHhhHHHHHHHHHHhccccCChHHHHhcCChHH-H--------HHHHHHHcCCcchHHHHHHHHH-HHHhcCCCCccc
Q 010721 245 TMLYIASLPGFILALGMQFTVESPRWLCKGGMLND-A--------KAVIANLWGESEINKAIEEFQL-VIKKDGSDLDSQ 314 (503)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 314 (503)
+.|++..+..++........||++++..++.+.++ . ....++..+.+........... ............
T Consensus 173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (426)
T PRK12307 173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFG 252 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998655444433333345666543322111000 0 0011111111111110000000 000000000001
Q ss_pred c-hhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHH
Q 010721 315 W-SELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 393 (503)
Q Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (503)
+ ...+....... ...+.......++.+++.++.|++.||++||+.+..+.++..+..+.+..... ...
T Consensus 253 ~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~- 321 (426)
T PRK12307 253 LLPTYLAGEGFDT---GVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ-------DNY- 321 (426)
T ss_pred HHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc-------ccH-
Confidence 1 11111111111 12345566778889999999999999999999888777666555444432211 111
Q ss_pred HHHHHHHHHHHH-hcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcch
Q 010721 394 SILGTLFYIFTF-AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPV 460 (503)
Q Consensus 394 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 460 (503)
......++..++ ..+..+....++.|.+|++.||++.|+.+...++++.++|.+.|++.+..|+...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 322 LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence 112222222222 2233344556778999999999999999999999999999999999999886543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=281.14 Aligned_cols=387 Identities=16% Similarity=0.131 Sum_probs=263.9
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
++.......++.++..++...++..+|.+.+++|+ +..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGL--SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 33455667777788888888888999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
++++++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++++.+.++|.++++++++.+.+..+ ||
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~ 177 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WR 177 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777 99
Q ss_pred HHHHhhHHHHHHHH-HHhccccCChHHHHhcCC---hHHHH--------------HHHH-HHcCCcchHHHHHHHHHHHH
Q 010721 245 TMLYIASLPGFILA-LGMQFTVESPRWLCKGGM---LNDAK--------------AVIA-NLWGESEINKAIEEFQLVIK 305 (503)
Q Consensus 245 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~~ 305 (503)
+.|++.+++.++.. +..++++|+|++...+.. +++.. +..+ ...+++....... .....
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 255 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSF--SYVLV 255 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHH--HHHHH
Confidence 99999887766554 334457777653210000 00000 0000 0000110000000 00000
Q ss_pred hcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhccc--CCchHH-HhhHHHHHHHHHHHHHHhc
Q 010721 306 KDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKE--GRQKLL-IGSYLGMAISMLLVVGATS 382 (503)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~~~ 382 (503)
.........|...+......... ..++...+...++.++++++.|+++||+ ++|+.. ....+...+..+.+.....
T Consensus 256 ~~~~~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T PRK11663 256 YVVRAAINDWGNLYMSETLGVDL-VTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF 334 (434)
T ss_pred HHHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc
Confidence 00000001122112111111111 1244567778889999999999999998 333332 2222222222222221111
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhH
Q 010721 383 LPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYA 462 (503)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 462 (503)
.+........+..+.+..+..........|.+|++.++++.|+.+...++|++++|.+.|++.|..|++..|.
T Consensus 335 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~ 407 (434)
T PRK11663 335 -------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFV 407 (434)
T ss_pred -------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHH
Confidence 1111111111111222222222234556799999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCC
Q 010721 463 GFGGVSLLSALFAYYFIVETKG 484 (503)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (503)
+.++++++.++..+...+++++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK11663 408 VISIAAGISALLLLPFLNAQAP 429 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhch
Confidence 8888888877766555544443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=274.54 Aligned_cols=368 Identities=16% Similarity=0.186 Sum_probs=264.5
Q ss_pred CchHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhH
Q 010721 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (503)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 162 (503)
+.+|+.+..+.++.+.++++....++..|.+++++|+ +..+.+++.+++.++..+++++.|+++||+|||+++.++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGL--TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3456778888999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc-
Q 010721 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH- 241 (503)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~- 241 (503)
+.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888765432
Q ss_pred hhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcc-hHHHHHH--------------------H
Q 010721 242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESE-INKAIEE--------------------F 300 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------~ 300 (503)
+||+.|++.++..++..+....+||++++..+++++++..+..++..+.+. .+..... .
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVV 245 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHH
Confidence 399999987777666666666688876544322222111111111111110 0000000 0
Q ss_pred HHHHHhcCCCCcccchh-hhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHH
Q 010721 301 QLVIKKDGSDLDSQWSE-LLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 379 (503)
Q Consensus 301 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 379 (503)
..............+.. .+.. ..... ....+.......++.+++.++.+++.||+++|+.+..+.++..+....+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-~~g~s-~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 323 (405)
T TIGR00891 246 LVLFANLYSHPIQDLLPTYLKA-DLGLS-PHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA 323 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHH-HhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH
Confidence 00000000000001111 1111 01111 112445667788899999999999999999999888776655333322222
Q ss_pred HhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc
Q 010721 380 ATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VA 458 (503)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 458 (503)
. . .....+.....+...+..+..+....++.|.+|++.|+++.|+.+.+.++|+.++|.+.|.+.|..| |+
T Consensus 324 ~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~ 395 (405)
T TIGR00891 324 I-G-------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG 395 (405)
T ss_pred h-C-------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1 0 1112222222223333344455566788999999999999999999999999999999999999998 66
Q ss_pred chhH
Q 010721 459 PVYA 462 (503)
Q Consensus 459 ~~~~ 462 (503)
..+.
T Consensus 396 ~~~~ 399 (405)
T TIGR00891 396 TALA 399 (405)
T ss_pred hhHH
Confidence 5444
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=278.08 Aligned_cols=370 Identities=14% Similarity=0.103 Sum_probs=255.8
Q ss_pred chHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHH
Q 010721 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (503)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 163 (503)
.+|..+.++++.+++++++...++...|.+++|+|+ +..+.|++.+++.+++.+++++.|+++||+|||+++..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL--SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence 356778888889999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC-----
Q 010721 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED----- 238 (503)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~----- 238 (503)
++++++++++++|++.++++|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM 162 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred -CCchhHHHHHhhHHHHHHHHH-HhccccCChHHH---HhcCChHHHHHHHHHHcC----------Ccch--HHHHH---
Q 010721 239 -DPHWWRTMLYIASLPGFILAL-GMQFTVESPRWL---CKGGMLNDAKAVIANLWG----------ESEI--NKAIE--- 298 (503)
Q Consensus 239 -~~~~wr~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~--- 298 (503)
..+ ||+.|++.+++.++..+ ..+++||+|+.. .+++ ++...+..+.... .... .....
T Consensus 163 ~~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T TIGR02332 163 ALKG-WQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEED-KKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF 240 (412)
T ss_pred Cccc-hhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHH-HHHHHHHHHhccccccccccccccccccHHHHHHHhc
Confidence 235 99999998888776644 445678877421 0100 0000000000000 0000 00000
Q ss_pred -------HHHHHHHhcCCCCcccchhhhccC-ccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHH-HhhHHH
Q 010721 299 -------EFQLVIKKDGSDLDSQWSELLEEP-HSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLL-IGSYLG 369 (503)
Q Consensus 299 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~ 369 (503)
................|...+... ..... ....+.......++.+++.++.|+++||+++|+.. ....+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s-~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~ 319 (412)
T TIGR02332 241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSS-NIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLF 319 (412)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHH
Confidence 000000000000011222222211 11111 12345667788889999999999999999977753 333333
Q ss_pred HHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 010721 370 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 449 (503)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g 449 (503)
..++. ++.... . ..........+...+. ....+.......|.+|+++|+++.|+.+...++|++++|.+.|
T Consensus 320 ~~~~~-~~~~~~--~-----~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g 390 (412)
T TIGR02332 320 AAAGW-LLASAT--D-----HNLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG 390 (412)
T ss_pred HHHHH-HHHHhc--C-----CHHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 33332 222111 0 1111111111111111 1112334455567899999999999999999999999999999
Q ss_pred HHHHHcC-CcchhHhHHHH
Q 010721 450 DLVETFG-VAPVYAGFGGV 467 (503)
Q Consensus 450 ~l~~~~g-~~~~~~~~~~~ 467 (503)
.+.|..| |...+.+.+++
T Consensus 391 ~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 391 ILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred cccccCCCCchhHHHHHHH
Confidence 9999876 77777665544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=270.65 Aligned_cols=380 Identities=14% Similarity=0.092 Sum_probs=239.1
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCC-CCchHHHH---HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGL---VVSIFIAGAFVGSISSGSLADKLGCRRTFQID 160 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~g~---~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~ 160 (503)
++..+...+++.+++.++...++...|.+.++++.+ .+..+.+. +.+..+++..++++++|+++||+|||+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 444566777889999999999999999999999631 14444444 34445555559999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHh
Q 010721 161 TIPLILGAIISAQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL 232 (503)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~ 232 (503)
.++++++++++++++++. .++++|+++|++.|..++...++++|++|+++|+++.++.+.+...|.++++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 588999999999999999999999999999999999999988888888888776
Q ss_pred hccCC--------CCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 010721 233 GIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVI 304 (503)
Q Consensus 233 ~~~l~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (503)
...+. ...+ ||+.|++.++++++.......+||+|++..++.++ ....+++.+++......... ...
T Consensus 180 ~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~-~~~ 254 (432)
T PRK10406 180 VVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQETRALKE---AGSLKGLWRNRRAFIMVLGF-TAA 254 (432)
T ss_pred HHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhcc---cccHHHHHhhHHHHHHHHHH-HHH
Confidence 54432 1345 99999998888877666656678877643221111 01111222111111000000 000
Q ss_pred HhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCC
Q 010721 305 KKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP 384 (503)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (503)
..........|...+........ ....+....+..+...++.++.|+++||++||+.+....++..+....+......
T Consensus 255 ~~~~~~~~~~~lp~~l~~~~g~s-~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~- 332 (432)
T PRK10406 255 GSLCFYTFTTYMQKYLVNTAGMH-ANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN- 332 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 00000001122221111111111 1123344556666777888899999999999998776655443333222211110
Q ss_pred CCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHcC-CcchhH
Q 010721 385 LDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-CNFLVGLFFLDLVETFG-VAPVYA 462 (503)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~ 462 (503)
......................+....+.+|.+|++.|+++.|+.+...++ .+...|.+.+. .+..| +...++
T Consensus 333 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~ 407 (432)
T PRK10406 333 ----VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFW 407 (432)
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHH
Confidence 011111111111111111111234557788999999999999999988764 34457777774 46566 444444
Q ss_pred hHHHHHHHHHHHHH
Q 010721 463 GFGGVSLLSALFAY 476 (503)
Q Consensus 463 ~~~~~~~~~~~~~~ 476 (503)
+.+++.+++.+..+
T Consensus 408 ~~~~~~~i~~~~~~ 421 (432)
T PRK10406 408 YVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=267.52 Aligned_cols=376 Identities=14% Similarity=0.075 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 165 (503)
|.....++++.+..... ...++.+|.+++|+|+ |..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~ 85 (393)
T PRK09705 9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGM--SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA 85 (393)
T ss_pred HHHHHHHHHHHHcchhh-hccchhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence 33344444443333222 6678999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHH
Q 010721 166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT 245 (503)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~ 245 (503)
++.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.+...+||+
T Consensus 86 ~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 86 VGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred HHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999997 6799999999999999999999999888776533999
Q ss_pred HHHhhHHHHHHHHHHhccc-cCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccch-hhhccCc
Q 010721 246 MLYIASLPGFILALGMQFT-VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS-ELLEEPH 323 (503)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 323 (503)
.+.+.++..++.++..++. ++.|+.. ++.+ .+ . .+..+++.......... ...........|. .++.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~---~-~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~lp~~l~~~g 236 (393)
T PRK09705 165 TLAWWALPAVVALFAWWWQSAREVASS-HKTT-TT---P-VRVVFTPRAWTLGVYFG--LINGGYASLIAWLPAFYIEIG 236 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc-cCCC-cC---C-cccccCHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcC
Confidence 9877666655444333332 2222210 0000 00 0 01111111111100000 0000000011122 1222211
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Q 010721 324 SRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIF 403 (503)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (503)
. .....+....+..++.++++++.+++.||+++|+....+..+..++.+++..... ... . ....+...
T Consensus 237 --~-s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~-~-~~~~l~g~ 304 (393)
T PRK09705 237 --A-SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL-------QLP-V-LWAMVCGL 304 (393)
T ss_pred --C-ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc-------hHH-H-HHHHHHHH
Confidence 1 1223556778889999999999999999999999888877766666555433211 111 1 11122222
Q ss_pred HHhcCccccccccccccC-CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchhHhHHHHHHHHHHHHHhhccC
Q 010721 404 TFAIGAGPVTGLVIPELS-SNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (503)
+.+ +..+.......+.. |++++++..|+.+...++++.++|.+.|++.|..| +...|.+.+.++++..++.+.+.+|
T Consensus 305 g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 305 GLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred hcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 222 22344444445555 46789999999999999999999999999999987 6666777777777777766777777
Q ss_pred CCCCC
Q 010721 482 TKGRS 486 (503)
Q Consensus 482 ~~~~~ 486 (503)
++++.
T Consensus 384 ~~~~~ 388 (393)
T PRK09705 384 RFPQL 388 (393)
T ss_pred cccch
Confidence 76654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=276.26 Aligned_cols=377 Identities=14% Similarity=0.178 Sum_probs=267.0
Q ss_pred chHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHH
Q 010721 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (503)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 163 (503)
.++..+..++++.+++.++....++.+|.+.+++|+ +..+.+++.+.+.+++.+++++.|+++||+|||++++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGL--TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 345667788888899999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
.+++.++++++++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+++.+.+..+ |
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w 173 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-W 173 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888877 9
Q ss_pred HHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcc-hHHHHHH------HHHHHH-----------
Q 010721 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESE-INKAIEE------FQLVIK----------- 305 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~----------- 305 (503)
|+.|++..+..++.++....+||++++..++++.++..+..+.....+. ....... ......
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAV 253 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence 9999886555554444445577766543322221111111111110000 0000000 000000
Q ss_pred -------------hcCCCC---------------------cccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHH
Q 010721 306 -------------KDGSDL---------------------DSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCAS 351 (503)
Q Consensus 306 -------------~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 351 (503)
...... ...+...+........ ....+...+...++.+++.++.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~-~~~~g~~~~~~~~~~~~g~~~~g 332 (496)
T PRK03893 254 LGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYD-PHTVANVLFFSGFGAAVGCCVGG 332 (496)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0001111110011111 11255677788899999999999
Q ss_pred HhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHH
Q 010721 352 YLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMG 431 (503)
Q Consensus 352 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 431 (503)
++.||+++|+.+..+..+..+..+.+.... ...........+...+.+.+..+....++.|.+|++.|++++|
T Consensus 333 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 405 (496)
T PRK03893 333 FLGDWLGTRKAYVCSLLISQLLIIPVFAIG-------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLG 405 (496)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhhcc-------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccc
Confidence 999999999988877655554443332211 0111222222222223333444556677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHH
Q 010721 432 FSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLS 471 (503)
Q Consensus 432 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 471 (503)
+.+....+|+.++|.+.|.+.+..|+...+...++.+.+.
T Consensus 406 ~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~ 445 (496)
T PRK03893 406 FTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFV 445 (496)
T ss_pred hhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887776555444333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=267.20 Aligned_cols=364 Identities=19% Similarity=0.183 Sum_probs=257.4
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHh-HHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 165 (503)
+.+..+++..++..++..+..+.+|. +.+++|. ++.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGF--SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA 92 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence 33667788888888888888999986 6788999 89999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhh--------hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC
Q 010721 166 LGAIISAQA--------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 166 ~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 237 (503)
++.+.+.++ .+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++|+.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 877766543 257789999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchh
Q 010721 238 DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE 317 (503)
Q Consensus 238 ~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (503)
+..+ ||+.+++..+..++..+.....|++++ +++++.+.++..++.... ... ......... ....+..
T Consensus 173 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~---~~~~~~~ 240 (399)
T PRK05122 173 HWGG-LAGLGLLIMLLALLGLLLARPRPAVPP---VKGERLPFRRVLGRVWPY----GMG-LALASIGFG---TIATFIT 240 (399)
T ss_pred Hccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC---CCccchhHHHHHHHHHHH----HHH-HHHHHHHHH---HHHHHHH
Confidence 8877 999988877666554444433444321 111111111111111000 000 000000000 0001111
Q ss_pred h-hccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHH
Q 010721 318 L-LEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSIL 396 (503)
Q Consensus 318 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (503)
. +.+... ...+.......++.+++.++.+++.||+++|+.+..+..+..++.+++.... +.+....
T Consensus 241 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 307 (399)
T PRK05122 241 LYYAARGW-----DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--------SPWMALI 307 (399)
T ss_pred HHHHHccc-----ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--------cHHHHHH
Confidence 1 111111 1122345567788889999999999999999988877777776665554421 1122222
Q ss_pred HHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHH
Q 010721 397 GTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 476 (503)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 476 (503)
...+...+.+ ...+.......|..|+++|+++.|+++...++|..+++.+.|.+.+..|++..+.+.+++.+++.++.+
T Consensus 308 ~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 308 GAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 223444456678889999999999999999999999999999999999999888888877777666554
Q ss_pred hh
Q 010721 477 YF 478 (503)
Q Consensus 477 ~~ 478 (503)
++
T Consensus 387 ~~ 388 (399)
T PRK05122 387 LL 388 (399)
T ss_pred Hh
Confidence 33
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=266.08 Aligned_cols=386 Identities=17% Similarity=0.096 Sum_probs=248.5
Q ss_pred chHHHHHHHHHHHHhhhhhhcccchhhHh-HHHhh--CCCCCchHHHHHH-----HHHHHHHHHHHHhhhhhhhhhcchH
Q 010721 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVS-IAKEL--GFEGNPILEGLVV-----SIFIAGAFVGSISSGSLADKLGCRR 155 (503)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~g~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~ 155 (503)
++++.+....++.++++++...++...|. +.+++ +. ++. .+++. ++.+++..+++++.|+++||+|||+
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~ 95 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQV--SPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH
Confidence 34556778888999999999998888774 45555 45 444 45543 3556677899999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHH
Q 010721 156 TFQIDTIPLILGAIISAQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII 227 (503)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 227 (503)
+++++.+++++++++++++++++ .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~ 175 (438)
T PRK09952 96 MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL 175 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 4888999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCC--------CCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHH---HHHHHHcCCcchHHH
Q 010721 228 TSLFLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK---AVIANLWGESEINKA 296 (503)
Q Consensus 228 ig~~~~~~l~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 296 (503)
++..+...+. ...+ ||+.|++.+++.++........||+|++...+++.++.+ ...+...+++.....
T Consensus 176 l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (438)
T PRK09952 176 LSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLK 254 (438)
T ss_pred HHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHH
Confidence 9877665443 2345 999999988877665555556788887643322111110 011111111111110
Q ss_pred HHHHHHHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHH
Q 010721 297 IEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL 376 (503)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 376 (503)
.... .............|...+.......... .........++..+++.++.|+++||++||+.+..+.++..++.+.
T Consensus 255 ~~~~-~~~~~~~~~~~~~~~~~y~~~~~g~s~~-~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~ 332 (438)
T PRK09952 255 IIAL-RLCELLTMYIVTAFALNYSTQNLGLPRE-LFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFP 332 (438)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 0000 0000000000011111111111111100 1112334456677888899999999999999888776655544333
Q ss_pred HHHHhcCCCCcchhhHHHHHHHHHHHHHHhc-CccccccccccccCCcccchhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010721 377 VVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVHW-VCNFLVGLFFLDLVET 454 (503)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~ 454 (503)
+...... ......+....+..++.. ...+..++++.|.+|++.|+++.|+.+.... +++.++|.+.+++.+.
T Consensus 333 ~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~ 406 (438)
T PRK09952 333 FFMALEA------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY 406 (438)
T ss_pred HHHHHHc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3221110 111112111222222222 2234567788999999999999999776654 8999999999999986
Q ss_pred cC--CcchhHhHHHHHHHHHHHHHhhccCC
Q 010721 455 FG--VAPVYAGFGGVSLLSALFAYYFIVET 482 (503)
Q Consensus 455 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (503)
.+ |...+.+.+++++++.+.. +..+++
T Consensus 407 ~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 407 FGGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred cCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 53 5556666666666665544 344543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=267.50 Aligned_cols=367 Identities=17% Similarity=0.113 Sum_probs=254.9
Q ss_pred HHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 169 (503)
....+..+..+. ....++..|.+.+++|+ +..+.|++.+++.+++.+++++.|+++||+|||+++.++.++.+++.+
T Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~ 83 (377)
T TIGR00890 7 VGTVIMCFTSGY-VYTWTLLAPPLGRYFGV--GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFT 83 (377)
T ss_pred HHHHHHHHHhhH-HhhhhhHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHH
Confidence 333333333333 55678889999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 170 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
++++++|++.++++|++.|++.+..++.....+.+++|+ +|+++.++...+.++|.++++.+.+.+.+..+ ||+.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~ 161 (377)
T TIGR00890 84 FYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHH
Confidence 999999999999999999999999888888899999974 69999999999999998877666666666666 9999999
Q ss_pred hHHHHHHHHHHhc-cccCChHHHHhcC-ChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCccccc
Q 010721 250 ASLPGFILALGMQ-FTVESPRWLCKGG-MLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA 327 (503)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (503)
.+++.++..+..+ +++++|+...+++ +.++..+..++..+++............... .......+....++....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 238 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVS-GLLLIGLYKPYGQSLGLS-- 238 (377)
T ss_pred HHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcCCC--
Confidence 8888877765554 3444433211111 1111111122222222221111110000000 000000011111111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhc
Q 010721 328 FIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI 407 (503)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (503)
....+.......++.++++++.|++.||++||+.+..+.++..++.+++..... .............+....
T Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~g 310 (377)
T TIGR00890 239 -DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM-------LNDVLFLATVALVFFTWG 310 (377)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc-------chhHHHHHHHHHHHHHhc
Confidence 112445677788899999999999999999999988888777777666544221 111111111111222222
Q ss_pred CccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHH
Q 010721 408 GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 472 (503)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 472 (503)
...+....+..|.+|+++|+++.|+.+...++|+.++|.+.|.+.+..|+...|.+.+++.+++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 23344566788999999999999999999999999999999999999999988887776665543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=266.40 Aligned_cols=360 Identities=12% Similarity=-0.005 Sum_probs=258.0
Q ss_pred chHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHH
Q 010721 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (503)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 163 (503)
++|..+..++++.++..++.++.+..+|.+.+|+|. +..+.+|+.+.|.+++.++++++|+++||+|||++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~--s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~ 80 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGA--SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL 80 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456778899999999999999999999999999998 888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcC-CCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCch
Q 010721 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 242 (503)
++++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|.++||.+++++.+..+
T Consensus 81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g- 159 (495)
T PRK14995 81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY- 159 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Confidence 9999999999999999999999999999999998888887766 67889999999999999999999999999999888
Q ss_pred hHHHHHhhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHH------------HHHHHcCCc-chHHHHH--------HH
Q 010721 243 WRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKA------------VIANLWGES-EINKAIE--------EF 300 (503)
Q Consensus 243 wr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~--------~~ 300 (503)
|||.|++...++++..++. +++|++++.. +++.+.... ..+...... ....... ..
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLG 237 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 9999999877776665444 4467654311 111111110 000000000 0000000 00
Q ss_pred HHHHHhcCCCCcccchhhhccCccccchhh----------------------------hHHHHHHHHHHHHHHHHHhHHH
Q 010721 301 QLVIKKDGSDLDSQWSELLEEPHSRVAFIG----------------------------DGALASLLVGVTNFAGALCASY 352 (503)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~g~ 352 (503)
..............-..+++++.+...... .++.......++..++.++.|+
T Consensus 238 ~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~ 317 (495)
T PRK14995 238 LFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGI 317 (495)
T ss_pred HHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111112334444443222111 1555666777888899999999
Q ss_pred hhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHH
Q 010721 353 LMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGF 432 (503)
Q Consensus 353 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 432 (503)
+.||+|+|+.+..+.++..++.+++..... . .+.+.......+...+.+. ..+.....+.+..|+++++.+.++
T Consensus 318 l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-~----~~~~~~~~~~~l~G~g~g~-~~~~~~~~~~~~~~~~~~g~~~~~ 391 (495)
T PRK14995 318 LVSRLGLRLVATGGMALSALSFYGLAMTDF-S----TQQWQAWGLMALLGFSAAS-ALLASTSAIMAAAPPEKAAAAGAI 391 (495)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHhcC-C----CchHHHHHHHHHHHHhHHH-HHHHHHHHHHhcCCHHhcchHHHH
Confidence 999999999888787777766665544221 0 1122222222222222222 223345566788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010721 433 SFSVHWVCNFLVGLFFLDLVET 454 (503)
Q Consensus 433 ~~~~~~~g~~~~~~~~g~l~~~ 454 (503)
.+...++|+.+|+.+.|.+.++
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=259.85 Aligned_cols=352 Identities=14% Similarity=0.045 Sum_probs=228.2
Q ss_pred hhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHH
Q 010721 101 YHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180 (503)
Q Consensus 101 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l 180 (503)
.....+++.+|.+++|+|+ +..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|++.+
T Consensus 5 ~~~~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDV--SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred HHHHHHHhhHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3445678899999999999 99999999999999999999999999999999988766655554444333344899999
Q ss_pred HHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHH-
Q 010721 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL- 259 (503)
Q Consensus 181 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~- 259 (503)
+++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++.++.+..+ ||+.|++.++++++..+
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHH
Confidence 9999999999996 55666677999999999999999999999999999999999988777 99999998887766654
Q ss_pred HhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccC-ccccchhhhHHHHHHH
Q 010721 260 GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP-HSRVAFIGDGALASLL 338 (503)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 338 (503)
..+++||+|++..++.+.++..+..+++.+++............ .........|...+... .+... .+....+
T Consensus 161 ~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~~~~~~~~~wlp~~L~~~g~s~~----~~~~~~l 234 (368)
T TIGR00903 161 VLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFG--VALFDNLAIWLEAALRPAGLEDI----AGDAVAL 234 (368)
T ss_pred HHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCChH----HHHHHHH
Confidence 44568888764321111111111223333332222111111100 00001112233222221 11111 2233333
Q ss_pred HHHHHHHHHHhHHHhhcccCCc---hHHHh-hHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcccccc
Q 010721 339 VGVTNFAGALCASYLMDKEGRQ---KLLIG-SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTG 414 (503)
Q Consensus 339 ~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (503)
..+.+. +..++++||..|| +.... ..++.++....+... .+.. ..+........+.....+..+
T Consensus 235 ~~~~g~---~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~~ 302 (368)
T TIGR00903 235 AILAGL---IGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE--------LNRL-ALFAFIGIAGLLMLPAYAIIM 302 (368)
T ss_pred HHHHHH---HHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc--------cccH-HHHHHHHHHHHhhhhhHHHHH
Confidence 333333 4457888887543 33222 223333222222211 0111 112222222222233335567
Q ss_pred ccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHH
Q 010721 415 LVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 476 (503)
Q Consensus 415 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 476 (503)
++.+|.+|++.|+++.|+.+..+++++.++|.+.+.+.. |....|.++++..+++++...
T Consensus 303 ~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 303 DWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999988873 666778888877777766553
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=263.68 Aligned_cols=362 Identities=17% Similarity=0.179 Sum_probs=229.4
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHH-HHHHH-----HHHHHHHHHhhhhhhhhhcchHHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGL-VVSIF-----IAGAFVGSISSGSLADKLGCRRTFQ 158 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~-~~s~~-----~~~~~i~~~~~g~l~dr~Grr~~l~ 158 (503)
|++....++++.+++.+|...++...|.+.+|++. ++.+.+. ..+.. .++..+++++.|+++||+|||++++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 90 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFP--AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI 90 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence 45568888999999999999999999999999998 5544433 33322 2333578999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhhhHHH--------HHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHH
Q 010721 159 IDTIPLILGAIISAQAHSLDE--------MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL 230 (503)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 230 (503)
.+.+++.+++++++++++++. ++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 688999999999999999999999999999999999999988888887777
Q ss_pred HhhccCC--------CCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHH
Q 010721 231 FLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQL 302 (503)
Q Consensus 231 ~~~~~l~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (503)
.+++.+. +..+ ||+.|++..+...+........||++++..++++. +.++..+...+..... .......
T Consensus 171 ~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 247 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHRP-SMREIFRSLAANWRIV-LAGMLMV 247 (434)
T ss_pred HHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhcc-ccccHHHHHHHhHHHH-HHHHHHH
Confidence 7766542 3455 99999986554333333333355554322111111 0011111111110000 0000000
Q ss_pred HHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHH-HHHHh
Q 010721 303 VIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL-VVGAT 381 (503)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~-~~~~~ 381 (503)
............|...+........ .........+..++.+++.++.|+++||++||+.+..+.++..+.... +....
T Consensus 248 ~~~~~~~~~~~~~~p~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 326 (434)
T PRK15075 248 AMTTVSFYLITVYTPTFGKTVLHLS-AADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV 326 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000001112221111111111 112345566778888999999999999999999877665444322211 11111
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHcCCc
Q 010721 382 SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-CNFLVGLFFLDLVETFGVA 458 (503)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~ 458 (503)
. . ...........+...+++ ...+....+..|.+|++.|+++.|+.+.+... ++.++|.+.|++.|..|+.
T Consensus 327 ~-~----~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 327 A-A----PSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred c-C----CchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 1 0 011111111111112222 22333456788999999999999997666554 5888999999999998864
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=258.22 Aligned_cols=361 Identities=14% Similarity=0.155 Sum_probs=252.5
Q ss_pred HHHHHHHHHhhhhhhcccchhhHh-HHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
++.+.++.++..+..+...|.+|. +++|+|. |..+.|++.+++.+++.++++++|+++||+|||++++.+.++..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~--s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGF--GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCC--cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 455566667777778888888886 5789999 9999999999999999999999999999999999999998887776
Q ss_pred HHHHHh--------hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 168 AIISAQ--------AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 168 ~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
.+.... .++++.++++|+++|++.+...+...+++.|++|+++|++++++++.+..+|.++||++++++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 543321 368899999999999999999999999999999999999999999999999999999999988887
Q ss_pred CchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccch-hh
Q 010721 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS-EL 318 (503)
Q Consensus 240 ~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 318 (503)
.+ ||+.+.+..+..++........||.+.. ++++.+.++..+...... .......... .....+. ..
T Consensus 175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~l~~~~~-------~~~~~~~~~~ 242 (392)
T PRK12382 175 FG-FAALALTTMVLPLLAWAFNGTVRKVPAH---AGERPSLWSVVGLIWKPG-LGLALQGVGF-------AVIGTFVSLY 242 (392)
T ss_pred cC-hHHHHHHHHHHHHHHHHHHHhccCCCCC---cccCchHHHHHHHHHHhH-HHHHHHHHHH-------hHHHHHHHHH
Confidence 77 9998877655544443333334443221 111111111111111100 0000000000 0000111 11
Q ss_pred hccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHH
Q 010721 319 LEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGT 398 (503)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (503)
+.+.... ..+.......++.++++++.|++.||+++|+.+..+..+..++.+++.... +.+......
T Consensus 243 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 309 (392)
T PRK12382 243 FASKGWA-----MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--------TAWVALAGA 309 (392)
T ss_pred HHhcCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--------cHHHHHHHH
Confidence 1111111 122334556777888999999999999999998888777777766554411 112222222
Q ss_pred HHHHHHHhcC-ccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHh
Q 010721 399 LFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 399 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 477 (503)
...+++.+ ..+.......+.+|+++||++.|+.+...++|..++|.+.|.+.+..||+..|.+.+++.+++.++.+.
T Consensus 310 --~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 310 --ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred --HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 22222222 234555667788999999999999999999999999999999999999999999888877777765544
Q ss_pred h
Q 010721 478 F 478 (503)
Q Consensus 478 ~ 478 (503)
.
T Consensus 388 ~ 388 (392)
T PRK12382 388 S 388 (392)
T ss_pred h
Confidence 3
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=237.37 Aligned_cols=387 Identities=18% Similarity=0.229 Sum_probs=291.5
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
.|........+...+.+..-..+-+.|...+.+|+ +..|..++......|..+++..+|.++|++|||+.+.+..+..
T Consensus 76 q~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~--s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 76 QWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGP--SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhch--hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 44556666666666666666666777888999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
++..++.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...++-.+..+.| ||
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr 230 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WR 230 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HH
Confidence 99999999999999999999999999998 899999999999999998877777 8999999999999988888888 99
Q ss_pred HHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchH-------------HHHH--HHHHHHHhcCC
Q 010721 245 TMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN-------------KAIE--EFQLVIKKDGS 309 (503)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~~~~~ 309 (503)
|.+.....+..+.++..+++||+|++...++++.++.+.++++.+.+... .+.+ ...........
T Consensus 231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~k 310 (528)
T KOG0253|consen 231 YLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAK 310 (528)
T ss_pred HHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcccc
Confidence 99999998888888888999999999999999998887777654332210 0000 00000000001
Q ss_pred CCcccchhhhccCccccchh----hh----------------------------------------------HHHHHHHH
Q 010721 310 DLDSQWSELLEEPHSRVAFI----GD----------------------------------------------GALASLLV 339 (503)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~----~~----------------------------------------------~~~~~~~~ 339 (503)
........++.....+.++. .. -+.-....
T Consensus 311 e~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllit 390 (528)
T KOG0253|consen 311 EVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLIT 390 (528)
T ss_pred ccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHH
Confidence 00111111111110000000 00 22334455
Q ss_pred HHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccc
Q 010721 340 GVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPE 419 (503)
Q Consensus 340 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (503)
.+..+.|.++.++++||+|||+.+...++++.+..+++..... ........+. .-.+..+.....+.|..|
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~--------rn~~tvllf~-arafisg~fqvaYvYtPE 461 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT--------RNAYTVLLFT-ARAFISGAFQVAYVYTPE 461 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC--------cchhHHHHHH-HHHHHhchheEEEEecCc
Confidence 6778899999999999999999999999888888777665321 1222222222 223334445567999999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCCCCH
Q 010721 420 LSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSL 487 (503)
Q Consensus 420 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (503)
.+|+..|+++.|....+..+|+++.|.+. +........+..++++++++++++..++--|+|+|..
T Consensus 462 VyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 462 VYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999999999999999999999999988 4444455677788888888888877666668888753
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=312.06 Aligned_cols=401 Identities=34% Similarity=0.560 Sum_probs=300.5
Q ss_pred HHHHHHhhhhhhcccchhhHhHH--HhhCCCCC-------chHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSIA--KELGFEGN-------PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~-------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 162 (503)
..++.+..+++...++...+... .++..+.+ +.+.+++.+...+|..+|++++|.++||+|||+.+.++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 45566888888888777665554 23333211 2357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh---hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 163 PLILGAIISAQAH---SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 163 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
+..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999998887655332
Q ss_pred Cc--hhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchh
Q 010721 240 PH--WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE 317 (503)
Q Consensus 240 ~~--~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (503)
.+ .||+.+++..+++++..+..+++||+|+|+..+++.+++++.+++.++.+.......+........... ...+.+
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 243 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQES-KASWRD 243 (451)
T ss_pred cccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccccc-ceeeee
Confidence 21 399999999999988888888999999999999998888888877544432222221111111111000 023333
Q ss_pred hhccCcc-ccchhhh-----------------------------HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhH
Q 010721 318 LLEEPHS-RVAFIGD-----------------------------GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSY 367 (503)
Q Consensus 318 ~~~~~~~-~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 367 (503)
+++.+.. ....... .........+..+++.++..++.||+|||++++.+.
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~ 323 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL 323 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4433220 0000000 112334455666777788889999999999999888
Q ss_pred HHHHHHHHHHH-HHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHH
Q 010721 368 LGMAISMLLVV-GATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL 446 (503)
Q Consensus 368 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 446 (503)
.++.++.+.+. ........+.......+....+....+..+..+..+.+.+|.+|++.|+++.|+.....++++++++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~ 403 (451)
T PF00083_consen 324 LLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPF 403 (451)
T ss_pred ccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88877777665 11111100001123333444444556666778888899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 010721 447 FFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMS 493 (503)
Q Consensus 447 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (503)
+...+.+..+....+.++++++++..++.++++||+|+++++|++++
T Consensus 404 ~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 404 LFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 99998888775667888888888888888899999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=261.69 Aligned_cols=377 Identities=18% Similarity=0.167 Sum_probs=260.4
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCc---hHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP---ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 165 (503)
...++++.++.++......+.+|.+.+++|.+..+ ...|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 95 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG 95 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence 44556677778888888899999999999984222 235899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHH
Q 010721 166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT 245 (503)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~ 245 (503)
++.+++.+.++++.+++.|++.|++.+ ..+....++.|++++++|++++++...+..+|.+++|.+++.+.+..+ ||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~ 173 (408)
T PRK09874 96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRP 173 (408)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHH
Confidence 999999999999999999999999865 567778889999999999999999999999999999999999887777 999
Q ss_pred HHHhhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHH-HHHHHHHhcCCCCcccchhhh-ccC
Q 010721 246 MLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE-EFQLVIKKDGSDLDSQWSELL-EEP 322 (503)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 322 (503)
.|++.+++.++..+.. ++++|+++.. ++++..+.++..+..++.+....... .......... ...+...+ .+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 249 (408)
T PRK09874 174 VFFITASVLFLCFLVTLFCIRENFQPV-SKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGS---IAPILTLYVREL 249 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccc-cchhhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 9999888776665544 3455543211 11111111222222222111111110 0000000000 00111111 110
Q ss_pred ccccc-hhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHH
Q 010721 323 HSRVA-FIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFY 401 (503)
Q Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (503)
..... .....+....+.+++.+++.+..|++.||+++|+.+..+..+..++.+.+... ...+.+....++
T Consensus 250 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 320 (408)
T PRK09874 250 AGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV---------QTPLQLGILRFL 320 (408)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHH
Confidence 00001 01112344556677888889999999999999999888777666555544331 111222222222
Q ss_pred HHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhcc
Q 010721 402 IFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 480 (503)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 480 (503)
.+.......+...+...+..|++++|+.+++.+....+|..++|.+.|.+.+..|++..|.+.+++.+++.++.++..+
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 321 LGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222345555667788888999999999999999999999999999999999999999888888887776654443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=256.18 Aligned_cols=368 Identities=11% Similarity=0.074 Sum_probs=256.7
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+..+++..+..++......+.+|.+++|+|. +..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGI--SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCC--CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 5677778888888888999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHH
Q 010721 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (503)
Q Consensus 169 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~ 248 (503)
+++++++|++.+++.|+++|++.+...+....++.|++++++|+++++++..+..+|..+++++++++.+..+ ||+.|+
T Consensus 83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~ 161 (382)
T PRK10091 83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFL 161 (382)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHH
Confidence 9999999999999999999999999889889999999999999999999999999999999999999888777 999999
Q ss_pred hhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccc-hhhhcc-Cccc
Q 010721 249 IASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW-SELLEE-PHSR 325 (503)
Q Consensus 249 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~ 325 (503)
+.+++.++..+.. +++||.++. ++ .+.++..+..++. ......... ............+ ...+.. ....
T Consensus 162 ~~~~~~~~~~~~~~~~lp~~~~~---~~--~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~s 233 (382)
T PRK10091 162 LIAVFNIAVLASIYFWVPDIRDE---AK--GGLREQFHFLRSP-APWLIFAAT--MFGNAGVFAWFSYIKPYMMFISGFS 233 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcc---cc--cCHHHHHHHhcCh-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9888776665433 447775421 11 1111112222211 111110000 0000000000000 111111 1111
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH
Q 010721 326 VAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF 405 (503)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (503)
. ...+.......++.++++++.+++.||+++|+.+..+..+..++.+++..... ..+.......+...+.
T Consensus 234 ~---~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~g~ 303 (382)
T PRK10091 234 E---TSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG-------MKTASLIFAFICCAGL 303 (382)
T ss_pred H---HHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHH
Confidence 1 12456677888999999999999999999999888887777766655433211 1122222222222222
Q ss_pred hcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcchhHhHHHHHHHHHHHHHhhc
Q 010721 406 AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET-FGVAPVYAGFGGVSLLSALFAYYFI 479 (503)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 479 (503)
.....+.......+..+++.++.+ ..+...++|..++|.+.|.+.|. .+|+..+.+.++++++.......+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 304 FALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred HhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 211222222334444454444443 44677889999999999999996 5788888877766665555444333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=265.66 Aligned_cols=368 Identities=17% Similarity=0.143 Sum_probs=254.0
Q ss_pred HHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhh
Q 010721 96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH 175 (503)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 175 (503)
+++..++...++...|.+.+++|. +..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCC--ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 345667778888899999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHH
Q 010721 176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF 255 (503)
Q Consensus 176 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~ 255 (503)
+++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+ ||+.|++.+++.+
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 159 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGI 159 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888777 9999999888877
Q ss_pred HHHHHhc-cccCChHHHHhcCChHHHHHHHH--------------------HHcCCcchHHHHHHHHHHHHhcCCCCccc
Q 010721 256 ILALGMQ-FTVESPRWLCKGGMLNDAKAVIA--------------------NLWGESEINKAIEEFQLVIKKDGSDLDSQ 314 (503)
Q Consensus 256 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (503)
+..+..+ +.+|+|+..... ++++.....+ +..+++...... ...............
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 236 (399)
T TIGR00893 160 IWGVLWLKFIPDPPQKAKWL-TEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLA--LGQFLVNIGLGFFLT 236 (399)
T ss_pred HHHHHhhheecCCCCccccC-CHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHH--HHHHHHHhHHHHHHH
Confidence 7655554 455554311100 0000000000 000000000000 000000000000001
Q ss_pred chhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHh-hHHHHHHH---HHHHHHHhcCCCCcchh
Q 010721 315 WSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIG-SYLGMAIS---MLLVVGATSLPLDEDFS 390 (503)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 390 (503)
+...+........ ....+.......++.+++.++.+++.||+++|+.... ......++ ......... ..
T Consensus 237 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 309 (399)
T TIGR00893 237 WFPTYLVQERGLS-ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN------YV 309 (399)
T ss_pred HHHHHHHHHhccc-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc------cc
Confidence 1111111000100 0114456677788889999999999999998862111 11111111 111111111 01
Q ss_pred hHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchhHhHHHHHH
Q 010721 391 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSL 469 (503)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~ 469 (503)
.............++..+..+....+..|.+|+++|+++.|+.+.+.++|+.++|.+.|.+.+..| +...+.+.+++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~ 389 (399)
T TIGR00893 310 NIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALAL 389 (399)
T ss_pred hhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHH
Confidence 112222223333334444567788899999999999999999999999999999999999999988 8888888777777
Q ss_pred HHHHHHH
Q 010721 470 LSALFAY 476 (503)
Q Consensus 470 ~~~~~~~ 476 (503)
++.++.+
T Consensus 390 ~~~~~~~ 396 (399)
T TIGR00893 390 IGALSYL 396 (399)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=266.34 Aligned_cols=384 Identities=14% Similarity=0.056 Sum_probs=272.4
Q ss_pred HHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHH
Q 010721 93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA 172 (503)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 172 (503)
.+..++..+......+.+|.+.++++. +..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 23 FIARFISIFGLGLLGVAVPVQIQMMTG--STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 334556666677778889999999987 899999999999999999999999999999999999998888887766654
Q ss_pred h-----hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Q 010721 173 Q-----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (503)
Q Consensus 173 ~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~ 247 (503)
. .++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+||.+++.+.+..+ |++.|
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~ 179 (417)
T PRK10489 101 LNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNY 179 (417)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHH
Confidence 2 46889999999999999998889999999999999999999999999999999999999998887666 99999
Q ss_pred HhhHHHHHHHHHHhccccCChHHHHhcCC-hHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCcccc
Q 010721 248 YIASLPGFILALGMQFTVESPRWLCKGGM-LNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326 (503)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
++.++..++..+..+.+|++++...++++ .++..+..+...+++................ . ...+...+.......
T Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~p~~~~~~~g~ 256 (417)
T PRK10489 180 GLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTMAS--A-VRVLYPALADEVWQM 256 (417)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHHHH--h-HHHhhHHHHHhccCC
Confidence 99887777776666677765432111111 1111122222223322211111000000000 0 011222121111111
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHh
Q 010721 327 AFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA 406 (503)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (503)
. ....+.......++.+++.++.+++.||.++++.+..+.++..++.+++... . .........+..+++
T Consensus 257 ~-~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~g~~ 325 (417)
T PRK10489 257 G-AAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM---------P-MWILAVLCLALFGYL 325 (417)
T ss_pred C-hhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc---------c-hHHHHHHHHHHHHHH
Confidence 1 1224566677888999999999999999877777777776666665554331 1 122222223333333
Q ss_pred cCc-cccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCCC
Q 010721 407 IGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGR 485 (503)
Q Consensus 407 ~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (503)
.+. .+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+..|+...+...+++.++.+++.+..+++.|++
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (417)
T PRK10489 326 SAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRF 405 (417)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 333 3455677889999999999999999999999999999999999999988888888887777777777777888877
Q ss_pred CHHHHHHH
Q 010721 486 SLEEIEMS 493 (503)
Q Consensus 486 ~~~~~~~~ 493 (503)
+++|.+++
T Consensus 406 ~~~~~~~~ 413 (417)
T PRK10489 406 RQTPPEVD 413 (417)
T ss_pred ccccccCC
Confidence 66655443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=264.72 Aligned_cols=382 Identities=14% Similarity=0.110 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 165 (503)
|..+..+++.......+...++..+|.+.++ |+ +..+.+++.+++.++++++++++|+++||+|||++++++.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~--s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CC--CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 4444455555556666666677788998888 88 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh----hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHH-HHHHHhhccCCCCC
Q 010721 166 LGAIISAQAH----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI-ITSLFLGIPAEDDP 240 (503)
Q Consensus 166 ~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~ig~~~~~~l~~~~ 240 (503)
++.+++++++ +++.++++|++.|++.+...+.....+.|++|+++|++++++++.+.++|. +++++++..+....
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 184 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN 184 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 9999888763 788899999999999999888888899999999999999999999999986 45565443332233
Q ss_pred chhHHHHHhhHHHHHHHH-HHhccccCChHHHHhcCChHH-----------------HHHHH-HHHcCCcchHHHHHHHH
Q 010721 241 HWWRTMLYIASLPGFILA-LGMQFTVESPRWLCKGGMLND-----------------AKAVI-ANLWGESEINKAIEEFQ 301 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~~~~ 301 (503)
+ ||+.|++.+++.++.. +..++++|+|+....+.+.+. .++.. +...+++..........
T Consensus 185 g-w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (452)
T PRK11273 185 D-WHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANV 263 (452)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHH
Confidence 5 9999999887776654 444567877653111100000 00000 00111111100000000
Q ss_pred HHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhccc--CCchHHH-hhHHHHHHHHHHHH
Q 010721 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKE--GRQKLLI-GSYLGMAISMLLVV 378 (503)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~-~~~~~~~~~~~~~~ 378 (503)
...........|...+........ ....+....+..++.+++.++.|+++||+ +||.... ....+..++.+++.
T Consensus 264 --~~~~~~~~~~~~~P~~l~~~~g~s-~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~ 340 (452)
T PRK11273 264 --FVYLLRYGILDWSPTYLKEVKHFA-LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 340 (452)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH
Confidence 000000000111111111111111 11234555677788889999999999998 4444322 22222222222221
Q ss_pred HHhcCCCCcchhhHHHHHHHHHHHHHHh-cCccccccccccccCCcccchhhHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Q 010721 379 GATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL-VGLFFLDLVETFG 456 (503)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g 456 (503)
.... ....... ..++..+.. .+.......+..|.+|++.+|++.|+.+...++|+.+ +|.+.|.+.|..|
T Consensus 341 ~~~~-------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 341 LNPA-------GNPTVDM-ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred Hhcc-------cChHHHH-HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence 1110 1111111 112222221 1222223345679999999999999999999888765 7999999999999
Q ss_pred CcchhHhHHHHHHHHHHHHHhhccCC
Q 010721 457 VAPVYAGFGGVSLLSALFAYYFIVET 482 (503)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (503)
++..|.+.++++++++++...+.+.+
T Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (452)
T PRK11273 413 WDGGFMVMIGGSILAVILLIVVMIGE 438 (452)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999888888777766655444333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=257.46 Aligned_cols=366 Identities=14% Similarity=0.080 Sum_probs=252.1
Q ss_pred CchHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhH
Q 010721 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (503)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 162 (503)
++.+.....+.+..++..+....+.+.+|.+.+++|. +..+.++..+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 86 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNA--GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 3455556677777778888889999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCch
Q 010721 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 242 (503)
+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+++++......+|..++|.+++.+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~- 165 (406)
T PRK15402 87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP- 165 (406)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 9999999999999999999999999999998889999999999999999999999988888999999999998887777
Q ss_pred hHHHHHhhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchh-hhc
Q 010721 243 WRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE-LLE 320 (503)
Q Consensus 243 wr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 320 (503)
||+.|++.+++.++..+.. +..||+++...++.+..+..+..+...+++.................. ...+.. ++.
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~ 243 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLA--WIALSPVILI 243 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH--HHHHhHHHHH
Confidence 9999999888777665544 346766432111111112222233333333222211111000000000 000001 111
Q ss_pred cCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Q 010721 321 EPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF 400 (503)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (503)
+ ...... ...+.......++.+++.++.+++.||+++|+.+..+.++..++.+++....... .....+......+
T Consensus 244 ~-~~g~~~-~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~ 318 (406)
T PRK15402 244 S-GEQLSS-YEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS---SHAYLWLTAGLSL 318 (406)
T ss_pred H-HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc---cccHHHHHHHHHH
Confidence 1 011111 1123344455667888999999999999999998888777777766665533111 0011112222222
Q ss_pred HHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcch
Q 010721 401 YIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPV 460 (503)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 460 (503)
+..+.+.. .+........ .+++++|++.++.+....++..+++.+.+.+.+..+....
T Consensus 319 ~g~g~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 376 (406)
T PRK15402 319 YAFGIGLA-NAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLF 376 (406)
T ss_pred HHHHHHHH-hhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Confidence 22222221 2222333323 3447899999999999999999999999999887775443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=257.43 Aligned_cols=373 Identities=13% Similarity=0.084 Sum_probs=258.7
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
+++..+.+++..++.+......++.+|.+.+++|+ +..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNL--PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45667788888899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC-CCchh
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-DPHWW 243 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~-~~~~w 243 (503)
+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+.. ..+ |
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w 161 (394)
T PRK03699 83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-W 161 (394)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H
Confidence 99999999999999999999999999999999999999999999999999999989999999999988877654 445 9
Q ss_pred HHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCc
Q 010721 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
|+.|.+.+++.++..+..++ .+.|+...++.++++ +..+... .+.. ...................|...+....
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~--~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 235 (394)
T PRK03699 162 YWVYACIGLVYVAIFILTLF-SEFPALGKHAPKADK--PVAKEKW-GIGV--LFLAIAALLYILAQLTFISWVPEYAQKK 235 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCccccccCccccC--ccccccC-ChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988777666544433 222211001110000 0000000 0000 0000000000000000112222222111
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Q 010721 324 SRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIF 403 (503)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (503)
.... ....+...+...++..+++++.++++||+++|+.+.....+..+...++.... +.. ......+..+
T Consensus 236 ~g~s-~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~G 305 (394)
T PRK03699 236 FGMS-LEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD--------DPS-HLLYAILGLG 305 (394)
T ss_pred cCCC-hHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC--------Cch-HHHHHHHHHH
Confidence 1111 11244566777888999999999999999999988776665555444443211 111 1222222222
Q ss_pred HHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHh
Q 010721 404 TFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 477 (503)
....+..+....+..+..|. .++...|......++|..++|.+.|++.+..|++..+++.+++.+++.+.+..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 22223344445556666654 46788899999999999999999999999999998888887777776554433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=250.62 Aligned_cols=364 Identities=14% Similarity=0.106 Sum_probs=248.7
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
.|..+..+.+..+..........+.+|.+.+++|. ++.+.++..+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~ 95 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGI--SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL 95 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence 44545555555555555555556678999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+..+ ||
T Consensus 96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~ 174 (394)
T PRK10213 96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WR 174 (394)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888 99
Q ss_pred HHHHhhHHHHHHHHHHhc-cccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccc-hhhhcc-
Q 010721 245 TMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW-SELLEE- 321 (503)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 321 (503)
+.|++.++++++..+..+ ..||.|+. +++. .+...+..+++................ .....+ ...+.+
T Consensus 175 ~~f~~~~~l~~~~~l~~~~~~p~~~~~---~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~ 246 (394)
T PRK10213 175 NVFNAAAVMGVLCIFWIIKSLPSLPGE---PSHQ---KQNTFRLLQRPGVMAGMIAIFMSFAGQ--FAFFTYIRPVYMNL 246 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCcc---cccc---hhHHHHHhcCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 999998877766554443 36665421 1111 111112222222221111100000000 000111 122211
Q ss_pred CccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHH
Q 010721 322 PHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFY 401 (503)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (503)
..+.. ...+......+++.+++.++.+++.||.+ |+.+..+..+..+..+.+.... ...+.......+
T Consensus 247 ~g~s~---~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~l- 314 (394)
T PRK10213 247 AGFGV---DGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG-------SDKIVATGVAII- 314 (394)
T ss_pred cCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHH-
Confidence 11111 12445677778889999999999999964 4443333333333322222211 012222222222
Q ss_pred HHHHhcCc-cccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHH
Q 010721 402 IFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL 473 (503)
Q Consensus 402 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 473 (503)
.+++.+. .+...+.+.+..| ++++...++.....++|..+|+.+.|.+.|..|+...+...+.+.++..+
T Consensus 315 -~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 315 -WGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred -HHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 2223222 3444556777777 44778888888888999999999999999999987777766655555444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=249.72 Aligned_cols=377 Identities=13% Similarity=0.013 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHH-hhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
++.+.+..++.++......+.+++.+.+.+ ++|+ +..|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~l--s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~ 110 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNF--TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 455777777777888888889998888876 8999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-----hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC--
Q 010721 165 ILGAIISAQA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-- 237 (503)
Q Consensus 165 ~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~-- 237 (503)
++.+++.+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.
T Consensus 111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~ 189 (462)
T PRK15034 111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV 189 (462)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999987 8999999999999998 6688999999999999999999999997666777665554443211
Q ss_pred ----------------CCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHH
Q 010721 238 ----------------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQ 301 (503)
Q Consensus 238 ----------------~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (503)
+.. +||..+++..++.++..++.++..++++. .+.+.+ ......+++..........
T Consensus 190 ~l~~~~G~~~~~~~~g~~~-~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--~~~~~~----~~~~vlk~~~~Wllslly~ 262 (462)
T PRK15034 190 PVFAFLGVNGVPQADGSVM-SLANAAWIWVPLLAIATIAAWSGMNDIAS--SRASIA----DQLPVLQRLHLWLLSLLYL 262 (462)
T ss_pred HHHHHhccccccccccchH-HHHHHHHHHHHHHHHHHHHHHHhCCCccc--cccCHH----HHHHHhCCCchhHHHHHHH
Confidence 122 38998888888877776666554333211 111111 1222223333222222111
Q ss_pred HHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHh
Q 010721 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 381 (503)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 381 (503)
........ ...+...+....+.... ......+..+...+.++++|+++||+|+++++.++.+++.++...+....
T Consensus 263 ~tFG~fvg--~s~~lp~~~~~~~~~~~---~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l 337 (462)
T PRK15034 263 ATFGSFIG--FSAGFAMLAKTQFPDVN---ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL 337 (462)
T ss_pred HHHHHHHH--HHHHHHHHHHHHcChHH---HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 11100000 01111111111111110 11223345677888999999999999999999988887776654433322
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHhcCcc-ccccccccccCCc---------------------ccchhhHHHHHHHHHH
Q 010721 382 SLPLDEDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELSSN---------------------RTRGKIMGFSFSVHWV 439 (503)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------------------~~~~~~~g~~~~~~~~ 439 (503)
. ... ..........++..+...+.+ ...+-++.+.+|+ ++.|.+.|+...++.+
T Consensus 338 p--~~~--~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~ 413 (462)
T PRK15034 338 P--GTG--SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV 413 (462)
T ss_pred c--ccc--ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc
Confidence 1 110 112233333333323333332 2345556666663 1578999999999999
Q ss_pred HHHHHHHHHHHHHHHcC-CcchhHhHHHHHHHHHHHHHhhccC
Q 010721 440 CNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 440 g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (503)
|+++.|.+.|...+.+| +...|+.+.+..+++.++.+..+.+
T Consensus 414 Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 414 GGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred ccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998877 6667888888888877777665544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=249.82 Aligned_cols=409 Identities=20% Similarity=0.241 Sum_probs=284.8
Q ss_pred CCchHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCC------CCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchH
Q 010721 82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE------GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR 155 (503)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 155 (503)
.|+..+.+.+..++.|.+.|+...++.+.|.+...+.-. .++...+.+..+..+|.++||+++|+++||+|||+
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 345677788899999999999999999998887665321 24566788999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHH
Q 010721 156 TFQIDTIPLILGAIISAQAH-------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT 228 (503)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 228 (503)
++...++++.++++++++.. -.+++...|++.|+|.|+-+|...+..+|...+++||...+.+.+..+.|...
T Consensus 116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 99999999999999888762 24567888999999999999999999999999999999998887777777777
Q ss_pred HHHhhccCC----CC----------CchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCCh-HHHHHHHHHHcCC---
Q 010721 229 SLFLGIPAE----DD----------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGML-NDAKAVIANLWGE--- 290 (503)
Q Consensus 229 g~~~~~~l~----~~----------~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 290 (503)
|.+++..+. .. .+-||..+.+..+++++.....+.+||++++.....++ +.+.+..++....
T Consensus 196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~ 275 (538)
T KOG0252|consen 196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIE 275 (538)
T ss_pred ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccc
Confidence 666553332 11 11299999999999999999899999999886332221 1111101000000
Q ss_pred ------------cch----HHHHHHH--HHHHHhcCCCC---------cccchhhhccCcccc------chhhhHHHHHH
Q 010721 291 ------------SEI----NKAIEEF--QLVIKKDGSDL---------DSQWSELLEEPHSRV------AFIGDGALASL 337 (503)
Q Consensus 291 ------------~~~----~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~~------~~~~~~~~~~~ 337 (503)
+.. ....... .........+. ...-..++..-.+.. .....+-....
T Consensus 276 ~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~i 355 (538)
T KOG0252|consen 276 AESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLI 355 (538)
T ss_pred hhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHH
Confidence 000 0000000 00000000000 000001111000000 00000112222
Q ss_pred HHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccc
Q 010721 338 LVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVI 417 (503)
Q Consensus 338 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (503)
+.....++|..+..+++|++|||+..+.++.++.+..+.+...+... .......+...+..++...|.......+.
T Consensus 356 ia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~----~~~~Gf~v~y~l~~ff~NFGPn~ttfivp 431 (538)
T KOG0252|consen 356 IAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL----ENTIGFVVLYSLTFFFGNFGPNATTFIVP 431 (538)
T ss_pred HHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc----cccCceeehHHHHHHHHhcCCCceeEEee
Confidence 33333444667777889999999999999999999888887654421 11111222333334444566777788899
Q ss_pred cccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCcchhHhHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 010721 418 PELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE-----TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEM 492 (503)
Q Consensus 418 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (503)
+|.+|.+.|+++.|+....+-.|++++...+.++.+ ..|.+.++++++++++++.+.. ++++|+|++++++++.
T Consensus 432 aE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~ 510 (538)
T KOG0252|consen 432 AEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISN 510 (538)
T ss_pred hhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhcC
Confidence 999999999999999999999999999999999999 7888999999999998888755 5667999999988865
Q ss_pred Hhc
Q 010721 493 SLN 495 (503)
Q Consensus 493 ~~~ 495 (503)
+.+
T Consensus 511 e~~ 513 (538)
T KOG0252|consen 511 EEE 513 (538)
T ss_pred hhh
Confidence 443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-30 Score=246.06 Aligned_cols=361 Identities=14% Similarity=0.088 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~ 166 (503)
+.++.+.++.++.........+.+|.+.+++|. +..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHL--PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336777888889999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Q 010721 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (503)
Q Consensus 167 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~ 246 (503)
+.+++++++|++.++++|+++|++.+...+...+.+.+..++++|++++++++.+.++|..+|+.+++.+.+... |...
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~ 162 (381)
T PRK03633 84 GCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLP 162 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHH
Confidence 999999999999999999999999999999888888899999999999999999999999999999998876532 3333
Q ss_pred HHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHH-HHHHHHHhcCCCCcccchh-hhccCcc
Q 010721 247 LYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE-EFQLVIKKDGSDLDSQWSE-LLEEPHS 324 (503)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 324 (503)
+........+..+.....++++. ++++..+..+.. +++....... .......... ...+.. .+++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~lp~~~~~~g~ 232 (381)
T PRK03633 163 WVTGLVLAAILPLLFTRILNQQA---ENHDSTSIWPML----KLRQARLGVNGCIISGIVLGS---LYGLMPLYLNHQGM 232 (381)
T ss_pred HHHHHHHHHHHHHHHhcccCCCC---CCCCCCCHHHHH----HhcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCC
Confidence 22222211111122222222211 011111111111 1111111100 0000000000 011111 1222111
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHH
Q 010721 325 RVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFT 404 (503)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (503)
.. ...+.......++.+++++..|++.||+++|+.+..+.....++.+.+.. . ........++ +.
T Consensus 233 s~---~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~----------~-~~~~~~~~l~-g~ 297 (381)
T PRK03633 233 SD---ASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS----------Q-AAMAPALFIL-GA 297 (381)
T ss_pred CH---HHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh----------h-HHHHHHHHHH-HH
Confidence 11 12345566778888999999999999999999888777666665544321 0 1111111222 22
Q ss_pred HhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHH
Q 010721 405 FAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 475 (503)
......|.....+.|..|+++++...+..+...++|++++|.+.|++.|+.|+...|.+.+.+.++..++.
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 22234566777788888888888888888888899999999999999999999888888777776555433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=261.13 Aligned_cols=370 Identities=14% Similarity=0.090 Sum_probs=243.1
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
+|..+..+.+...........++..+|.+.+++|. +..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~--s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQA--TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA 94 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCc--chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence 45555555555444444445677888999999999 8889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHH-HHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 165 ILGAIISAQAHSLDEMLW-GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
++++++++++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+++.+.+..+ |
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-w 172 (455)
T TIGR00892 95 SLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-W 172 (455)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-h
Confidence 999999999999998875 5799999999877777888899996 679999999999999999999999998888777 9
Q ss_pred HHHHHhhHHHHHHHHHHhccc-cCChHHHHhcCC---------hHHH------HHHHH-----HHcCCcchHHHHHHHHH
Q 010721 244 RTMLYIASLPGFILALGMQFT-VESPRWLCKGGM---------LNDA------KAVIA-----NLWGESEINKAIEEFQL 302 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~------~~~~~-----~~~~~~~~~~~~~~~~~ 302 (503)
|+.|++.+++.++..+..+++ ++.+.....+.+ ..+. .+... +..+++....... ..
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 250 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLS--GN 250 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHH--HH
Confidence 999999888777655444333 222110000000 0000 00000 0000000000000 00
Q ss_pred HHHhcCCCCcccchh-hhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhccc--CCchHHHhhHHHH--HHHHHHH
Q 010721 303 VIKKDGSDLDSQWSE-LLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKE--GRQKLLIGSYLGM--AISMLLV 377 (503)
Q Consensus 303 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~--~~~~~~~ 377 (503)
............+.. +..+. .. .....+...++.+++.++++++.+++.||. ++++...+..... +++.+++
T Consensus 251 ~l~~~~~~~~~~~l~~~~~~~--g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~ 327 (455)
T TIGR00892 251 VIMFLGFFAPIIFLVPYAKDK--GV-DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC 327 (455)
T ss_pred HHHHHHccchHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000011111 11111 11 112255667778888899999999999974 3343333322222 2222222
Q ss_pred HHHhcCCCCcchhhHHHHHHHHHHHHHHhc-CccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010721 378 VGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 456 (503)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 456 (503)
... .+...++...+ ..+++. ...+...+++.|.+|+++++++.|+++...++|++++|.+.|.+.+..|
T Consensus 328 ~~~---------~~~~~~~i~~~-~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 328 ALA---------GDYTGLVIYCI-FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHh---------chHHHHHHHHH-HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence 211 12222222222 222332 3345567778899999999999999999999999999999999999875
Q ss_pred -CcchhHhHHHHHHHHHH
Q 010721 457 -VAPVYAGFGGVSLLSAL 473 (503)
Q Consensus 457 -~~~~~~~~~~~~~~~~~ 473 (503)
|...|.+.+++.+++.+
T Consensus 398 ~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 398 NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred CcchHHHHhhHHHHHHHH
Confidence 88888877776665554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=258.20 Aligned_cols=391 Identities=21% Similarity=0.202 Sum_probs=282.6
Q ss_pred HHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 169 (503)
...+.............++..+ .+.+.. +.....+..+++++|.++|++++|+++||+|||+++++++++..++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~s~~~~--~~~~c~--~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~ 163 (521)
T KOG0255|consen 88 IVICLDGWVYDYGSSVYSIVSE--WNLVCD--SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGI 163 (521)
T ss_pred cccccceeEecCCCCcccccch--hceeeC--cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHH
Confidence 3334333443444444444443 344454 778889999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 170 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
+.++++|++.++++|++.|++.+........++.|++++++|+.+..+ ......|..+++..++++.. + ||+.+++
T Consensus 164 ~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~-Wr~~~~~ 239 (521)
T KOG0255|consen 164 LTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D-WRWLFWI 239 (521)
T ss_pred HHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999 77777777777777777766 4 9999999
Q ss_pred hHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCc----chHHHHHHH--HHHHHhcCCCCcccchhhhccCc
Q 010721 250 ASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGES----EINKAIEEF--QLVIKKDGSDLDSQWSELLEEPH 323 (503)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
..++.++.++..++.+|+|+|+..+++.+++.+.+++..+.+ ......... ..............+..+++.+.
T Consensus 240 ~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (521)
T KOG0255|consen 240 ISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPR 319 (521)
T ss_pred HHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHH
Confidence 999999888876667799999999999998888887764321 111111111 11111111112234555665553
Q ss_pred cccchhhh------------------------HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHH
Q 010721 324 SRVAFIGD------------------------GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 379 (503)
Q Consensus 324 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 379 (503)
........ ........+..........+...|+.|||.....+..+..++++...+
T Consensus 320 l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~ 399 (521)
T KOG0255|consen 320 LRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGW 399 (521)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 22211111 334444455566677777889999999999999999999999988888
Q ss_pred HhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 010721 380 ATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAP 459 (503)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 459 (503)
..... ..+.......+..++...++.. .+.+..|++|+..|..+.+.......++++++|.+.-.... .....
T Consensus 400 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~ 472 (521)
T KOG0255|consen 400 LPDDL-----GGWLHWILPLLGKFFIGSAFNL-IFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLL 472 (521)
T ss_pred hhccc-----hhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccc
Confidence 65422 1112333333333333333333 47889999999999999999999999999999987754444 33333
Q ss_pred hhHhHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 010721 460 VYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLN 495 (503)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (503)
.+.+++.+..+.+++...++||++.+.+.+..++.+
T Consensus 473 ~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 473 GLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred hHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 333356667777777778899999887655444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-30 Score=246.93 Aligned_cols=351 Identities=13% Similarity=0.088 Sum_probs=244.9
Q ss_pred HHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
.+..+.+..+........+.+.+|.+.+++|. ++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 83 (385)
T TIGR00710 6 FALLLGCLSILGPLGIDMYLPAFPEIAADLST--PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS 83 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 34455555566778888889999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Q 010721 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (503)
Q Consensus 168 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~ 247 (503)
.++++++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~ 162 (385)
T TIGR00710 84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIF 162 (385)
T ss_pred HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887777 99999
Q ss_pred HhhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchh-hhc-cCcc
Q 010721 248 YIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE-LLE-EPHS 324 (503)
Q Consensus 248 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 324 (503)
++.++..++..+.. ++.||+++.. ++.+.++..+..++..+++.................. ...+.. .+. ....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~ 239 (385)
T TIGR00710 163 AFLSLAGILLSALIFFILPETLPYE-ARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFA--FFSGAPFVYIDIMGV 239 (385)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCc-ccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH--HHHcChHHHHHHcCC
Confidence 99887776665444 4466654321 1111222223333333333222111110000000000 000111 111 1111
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHH
Q 010721 325 RVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFT 404 (503)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (503)
.. ...+.......++.+++.++.+++.||+++|+.+..+..+..++.+++....... ..............+
T Consensus 240 ~~---~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g 311 (385)
T TIGR00710 240 SP---SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG-----LGSWAMIIGPMMFVG 311 (385)
T ss_pred CH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHH
Confidence 11 1244566777888999999999999999999988887777766666554432110 111222222222222
Q ss_pred Hhc-CccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 405 FAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 453 (503)
Q Consensus 405 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 453 (503)
++. ...+.......|..| +.++++.++.+...+.++.+.+.+.+.+.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 222 223445566677776 569999999999988777777777774444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=254.72 Aligned_cols=374 Identities=14% Similarity=0.077 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~ 166 (503)
+.+....+..++..+......+.+|.+.+++|+ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNL--TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 344455555566666666778889999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC----C----
Q 010721 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE----D---- 238 (503)
Q Consensus 167 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~----~---- 238 (503)
+.++++++++++.++++|+++|++.+... ....+++|++|+++|++++++.....++|..+++.+...+. .
T Consensus 114 ~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 192 (476)
T PLN00028 114 AVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP 192 (476)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999988654 45668999999999999999998777777776655543321 1
Q ss_pred -CCchhHHHHHhhHHHHHHHHHHhcccc-CChHHH----HhcCChH--HHHHHHHHHcCCcchHHHHHHHHHHHHhcCCC
Q 010721 239 -DPHWWRTMLYIASLPGFILALGMQFTV-ESPRWL----CKGGMLN--DAKAVIANLWGESEINKAIEEFQLVIKKDGSD 310 (503)
Q Consensus 239 -~~~~wr~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (503)
..+ ||+.|++.+++.++..+..++++ +.|+.. .++.+.+ +..+..++..+.................. .
T Consensus 193 ~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 269 (476)
T PLN00028 193 SFTA-WRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVE--L 269 (476)
T ss_pred chhh-hHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHH--H
Confidence 134 99999998888877766555544 333210 0000000 00011111111111111110000000000 0
Q ss_pred CcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCch-------HHHhhHHHHHHHHHHHHHHhcC
Q 010721 311 LDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQK-------LLIGSYLGMAISMLLVVGATSL 383 (503)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~ 383 (503)
....+...+........ ...++....+..++.++++++.|+++||+++|+ .......+.++..+++..
T Consensus 270 ~~~~~~p~~l~~~~g~s-~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~---- 344 (476)
T PLN00028 270 TMDNIIAEYFYDRFGLS-LETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR---- 344 (476)
T ss_pred HHHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc----
Confidence 00111111111111111 123556777888999999999999999998652 111222222121221111
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHh
Q 010721 384 PLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG 463 (503)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 463 (503)
. .+.........++..+... ..+..+.+..+..| +++|++.|+.+...++|+.++|.+.+ ..+..+|...|.+
T Consensus 345 ~----~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~ 417 (476)
T PLN00028 345 A----NSLGAAIVVMILFSIFVQA-ACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISL 417 (476)
T ss_pred c----chHHHHHHHHHHHHHHHHH-hhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHH
Confidence 0 0111222222222222211 22234455666554 67999999998877777777776654 1123357788888
Q ss_pred HHHHHHHHHHHHHhh
Q 010721 464 FGGVSLLSALFAYYF 478 (503)
Q Consensus 464 ~~~~~~~~~~~~~~~ 478 (503)
.+++.++++++.++.
T Consensus 418 ~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 418 MGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHHHHHHHhe
Confidence 887777776655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=250.44 Aligned_cols=358 Identities=15% Similarity=0.169 Sum_probs=251.8
Q ss_pred HHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
.+++++++.++..++...+.+.+|.+.+++|. +..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGE--SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 46677788889999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Q 010721 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (503)
Q Consensus 168 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~ 247 (503)
.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+..+ ||+.|
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f 167 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF 167 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877 99999
Q ss_pred HhhHHHHHHHHHHhcc-ccCChHHHHhcCChHHHHHHHH---------HHcCCcc---hHHHHH---------HHHHHHH
Q 010721 248 YIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIA---------NLWGESE---INKAIE---------EFQLVIK 305 (503)
Q Consensus 248 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~---------~~~~~~~ 305 (503)
++.....++..+.... .|+.+. .+.+.+....... ...+... ...... .......
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (471)
T PRK10504 168 LINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH 244 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9987776665544433 444321 1111111110000 0000000 000000 0000000
Q ss_pred hcCCCCcccchhhhccCccccchhh----------------------------hHHHHHHHHHHHHHHHHHhHHHhhccc
Q 010721 306 KDGSDLDSQWSELLEEPHSRVAFIG----------------------------DGALASLLVGVTNFAGALCASYLMDKE 357 (503)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~g~l~d~~ 357 (503)
.........-..+++++.+...... ..++......++.+++.++.+++.||+
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 324 (471)
T PRK10504 245 ARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF 324 (471)
T ss_pred HhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0000000111123344333222111 134555566666777788999999999
Q ss_pred CCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHH-HHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHH
Q 010721 358 GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSIL-GTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSV 436 (503)
Q Consensus 358 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 436 (503)
++|+.+..+..+..+..+++.+... ........ ...+...+.+. ..+....+..+..|++.++.++|+.+..
T Consensus 325 g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 397 (471)
T PRK10504 325 GYRRVLVATTLGLALVSLLFMLVAL------LGWYYLLPFVLFLQGMVNST-RFSSMNTLTLKDLPDNLASSGNSLLSMI 397 (471)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccc------cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence 9999998888877777665554221 01111111 11121122222 2234556677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCc
Q 010721 437 HWVCNFLVGLFFLDLVETFGVA 458 (503)
Q Consensus 437 ~~~g~~~~~~~~g~l~~~~g~~ 458 (503)
..+|..+++.+.|.+.+..|+.
T Consensus 398 ~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 398 MQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999887753
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-32 Score=246.00 Aligned_cols=364 Identities=14% Similarity=0.090 Sum_probs=248.4
Q ss_pred CCCCchHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH
Q 010721 80 LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI 159 (503)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~ 159 (503)
..++..+..+.++++...++..+...+...++.+++.||+ ++...|++.+.+.+.+.+++|+.|+++|||.||+++.+
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni--~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v 103 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNI--SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV 103 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCC--CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence 3455566778999999999999999999999999999999 88889999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 160 DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
|..++.++.++++++..||+++++|.+.|+|.+...+.++++++|.+|+++|++++++++.+.++|..+|.+++..+.+.
T Consensus 104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CchhHHHHHhhHHHHHHHHHHhcc-ccCChHHHHhcCChH--------HHHHHHHHHcCCcchHH-HHHHHHHHHH--hc
Q 010721 240 PHWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLN--------DAKAVIANLWGESEINK-AIEEFQLVIK--KD 307 (503)
Q Consensus 240 ~~~wr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~ 307 (503)
.++|||.|+..+++++++.++.++ .+|+.+....+.+.+ ...+.++...+.+.... .......... ..
T Consensus 184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~ 263 (493)
T KOG1330|consen 184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSL 263 (493)
T ss_pred ccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhcccc
Confidence 877999999999999988766655 555443221111110 11112222222111110 0000000000 00
Q ss_pred CCC---CcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCc-------hH-HHhhHHHHHHHHHH
Q 010721 308 GSD---LDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQ-------KL-LIGSYLGMAISMLL 376 (503)
Q Consensus 308 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~-~~~~~~~~~~~~~~ 376 (503)
..+ ....+.++.. +... ....+..+..+++.+|.+++|.++||+.++ +. .+.+......+..+
T Consensus 264 sww~p~~~~~~~~~~~---~~~~---~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~ 337 (493)
T KOG1330|consen 264 SWWAPAFIYYSYELIG---FDHN---ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPF 337 (493)
T ss_pred chhhhhHHHHHHHHhC---Cccc---cchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHH
Confidence 000 0011111111 0000 122456677778888889999999984321 11 11222222222222
Q ss_pred HHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHc
Q 010721 377 VVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN-FLVGLFFLDLVETF 455 (503)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~ 455 (503)
+....... ....+..+...++.............-+..|.+|++.|.++.++-..+..+.+ +-+|++.|.+.|+.
T Consensus 338 L~~~~~~~----~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 338 LFLFPAFT----SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHHHhhh----hHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 22222111 12222222222222222222233445567788999999999999998877544 55566999999875
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=253.90 Aligned_cols=386 Identities=15% Similarity=0.118 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 165 (503)
+..++.+.+...........+....|.+++ +|+ ++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGF--SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCC--CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 455566666667777777777777788776 588 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh----hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC-CC
Q 010721 166 LGAIISAQA----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-DP 240 (503)
Q Consensus 166 ~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~-~~ 240 (503)
++.++.++. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..+++.+.+.... ..
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 182 (438)
T TIGR00712 103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN 182 (438)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 998887764 4677888999999999999999899999999999999999999999999999998877665433 34
Q ss_pred chhHHHHHhhHHHHHHHH-HHhccccCChHHHHhcCCh----H--HH-----------HHHH-HHHcCCcchHHHHHHHH
Q 010721 241 HWWRTMLYIASLPGFILA-LGMQFTVESPRWLCKGGML----N--DA-----------KAVI-ANLWGESEINKAIEEFQ 301 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~--~~-----------~~~~-~~~~~~~~~~~~~~~~~ 301 (503)
+ ||+.|++.++++++.. +..++++|+|+....++.+ + +. ++.. +...+++........
T Consensus 183 ~-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 259 (438)
T TIGR00712 183 D-WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIA-- 259 (438)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHH--
Confidence 5 9999999888877754 4445577766532100000 0 00 0000 001111111000000
Q ss_pred HHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHh
Q 010721 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 381 (503)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 381 (503)
.............+...+........ ....+....+..+.++++.++.|++.||+++++....+.....+..+......
T Consensus 260 ~~~~~~~~~~~~~~~p~~l~~~~g~s-~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (438)
T TIGR00712 260 NVFVYLLRYGVLDWSPTYLKEVKHFA-LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW 338 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHccCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH
Confidence 00000000000111111111111111 11244566777888999999999999999654322223222221111111111
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHh-cCccccccccccccCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHcCCcc
Q 010721 382 SLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN-FLVGLFFLDLVETFGVAP 459 (503)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~ 459 (503)
... ..+..... ..++..++. .+..........|.+|++.|+++.|+.+...++++ +++|.+.|.+.|..|+..
T Consensus 339 ~~~----~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~ 413 (438)
T TIGR00712 339 MNP----AGNPLVDM-ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 413 (438)
T ss_pred hcC----CCchHHHH-HHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchH
Confidence 000 01111111 122222222 22222223456789999999999999999988875 689999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHhhccCCC
Q 010721 460 VYAGFGGVSLLSALFAYYFIVETK 483 (503)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~ 483 (503)
.+.+..++.+++.++.+...+|.|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 414 GFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 998888888777777777777665
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=245.42 Aligned_cols=371 Identities=14% Similarity=0.043 Sum_probs=246.0
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
....+..+++..++.++......+.+|.+++++|+ ++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~--s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34456777788888899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC---
Q 010721 165 ILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED--- 238 (503)
Q Consensus 165 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~--- 238 (503)
+++++++ .++++++.++++|+++|+|.|...+..+.++.|+.++++|...+++.+..+.+|..+++.++..+..
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999886 4679999999999999999999999999999998877777778999999999999999988764320
Q ss_pred --------------C-Cc-------hhHHHHHhhH-HHHHHHHHH-hccccCChHHHHhcCChHHHHHHHHHHcCCcchH
Q 010721 239 --------------D-PH-------WWRTMLYIAS-LPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN 294 (503)
Q Consensus 239 --------------~-~~-------~wr~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (503)
. .+ +||++|+... +..++..+. ....||.+.....+++..+..+..+++.+++...
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWR 261 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccchhhhHHHHHhCchHH
Confidence 0 01 2666776433 333333322 2335543221100000111111122222222211
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhh-ccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHH
Q 010721 295 KAIEEFQLVIKKDGSDLDSQWSELL-EEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 373 (503)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 373 (503)
............... ...|...+ ...... ......+.......++.++++++.+++.||+++|+++..+.++..+.
T Consensus 262 ~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~g-~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 262 WAVLAQFCYVGAQTA--CWSYLIRYAVEEIPG-MTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 111100000000000 01122211 111111 11223567778889999999999999999999999888777666555
Q ss_pred HHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 374 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 453 (503)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 453 (503)
+++..+.. . ...+.... ..+.......|..++...+..|++ .+++.++... ..+|+.++|.+.|.+.|
T Consensus 339 ~~~~~~~~--------~-~~~~~~~~-l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~ 406 (438)
T PRK10133 339 CLISAFAG--------G-HVGLIALT-LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSD 406 (438)
T ss_pred HHHHHHcC--------C-hHHHHHHH-HHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHH
Confidence 54443311 1 11222222 222223334577778788887754 7788888864 55788999999999999
Q ss_pred HcC-CcchhHhHHHHHHHHH
Q 010721 454 TFG-VAPVYAGFGGVSLLSA 472 (503)
Q Consensus 454 ~~g-~~~~~~~~~~~~~~~~ 472 (503)
..| .+..|++...+.+...
T Consensus 407 ~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 407 AAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred hccchHHHHHHHHHHHHHHH
Confidence 887 6666665444444333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=246.75 Aligned_cols=351 Identities=12% Similarity=0.025 Sum_probs=249.7
Q ss_pred HHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (503)
+.++.++..+......+.+|.+..+++. +..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTG--SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 4566777788888888999999999988 99999999999999999999999999999999999999999999999988
Q ss_pred Hhhh-----hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Q 010721 172 AQAH-----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (503)
Q Consensus 172 ~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~ 246 (503)
.+++ +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..+ ||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~ 160 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWA 160 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHH
Confidence 8887 999999999999999999999999999999999999999999999999999999999999887777 9999
Q ss_pred HHhhHHHHHHHHHHhcc--ccCChHHHHhcCC---hHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhcc
Q 010721 247 LYIASLPGFILALGMQF--TVESPRWLCKGGM---LNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE 321 (503)
Q Consensus 247 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (503)
|++.++..++..+..+. .||+++...++.+ .++..+..+...+++................ ......+...+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 239 (365)
T TIGR00900 161 IWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVF-APAIVALFPYVQS 239 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH
Confidence 99887776665544433 3333221111101 0111122222333332221111100000000 0000011111111
Q ss_pred CccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHH
Q 010721 322 PHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFY 401 (503)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (503)
....... ...+.......++.+++.++.+++.||.++|+.+..+..+..++.+.+.+.. . .........+
T Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~ 309 (365)
T TIGR00900 240 KYLGRGS-THYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP--------P-NFPLFLVLWF 309 (365)
T ss_pred HHhCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc--------h-hHHHHHHHHH
Confidence 1011111 1244566777888999999999999999999988877666666655554421 1 1222222222
Q ss_pred HHHHhc-CccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010721 402 IFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 456 (503)
Q Consensus 402 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 456 (503)
..+++. ...+...++..|.+|+++|+++.|+.+...++++.++|.+.|.+.|..|
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 223332 2345667888999999999999999999999999999999999998764
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=257.11 Aligned_cols=381 Identities=16% Similarity=0.108 Sum_probs=249.7
Q ss_pred CCchHHHHHHHHHHHHhhhhhhcccchhhHhHHH----------------------hhCCCCCchHHHHHHHHHHHHHHH
Q 010721 82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAK----------------------ELGFEGNPILEGLVVSIFIAGAFV 139 (503)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~g~~~s~~~~~~~i 139 (503)
.+.++....+++++..+...++..++...+.+.+ |+++ +..+.|++.+.+.+++.+
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKW--SGALQGLILSSHFYGQII 91 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCC--CHHHhhHHHHHHHHHHHH
Confidence 3456777888888888889999998888888876 7777 899999999999999999
Q ss_pred HHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhH
Q 010721 140 GSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL 217 (503)
Q Consensus 140 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 217 (503)
++++.|+++||+|||+++.++.++++++.+++.++ .+++.++++|+++|++.+...+....++.|++|+++|++++++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999998887654 5688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCC-chhHHHHHhhHHHHHHHHHHhcc-ccCChHHHHhcCChHHHHHHHHHH-cCCc---
Q 010721 218 CQVGTCLGIITSLFLGIPAEDDP-HWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANL-WGES--- 291 (503)
Q Consensus 218 ~~~~~~~G~~ig~~~~~~l~~~~-~~wr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 291 (503)
...+..+|.++++++++.+.+.. + ||+.|++.+++.++..++.++ .+|+|+.... .++++ ++..++. ..+.
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~-~~~i~~~~~~~~~~~ 248 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC-ISKFE-KKYINSSLQGQKGST 248 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccCCC-CCHHH-HHHHHhhcccccCCC
Confidence 99999999999999999988774 6 999999998888777665554 5566642111 11111 1111110 0000
Q ss_pred ----chHHHHH------HHH-HHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCc
Q 010721 292 ----EINKAIE------EFQ-LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQ 360 (503)
Q Consensus 292 ----~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 360 (503)
....... ... .............|...+........ ....+....+..++.+++.++.|+++||+++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s-~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 249 RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVS-GKENGLLSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0000000 000 00000000000111111111111111 11245667778889999999999999997644
Q ss_pred hHH--------HhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHH
Q 010721 361 KLL--------IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGF 432 (503)
Q Consensus 361 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 432 (503)
+.. ..+......+..++..... . ......+....+...+..+..+.......|..|. .+|.+.|+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~ 400 (465)
T TIGR00894 328 KTLSLTAARKIFNGIGGLGPGIFAYALPYL-S-----AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGI 400 (465)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHc-C-----CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHH
Confidence 211 1111111111111111110 0 1111122222222222222223334445566665 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--C-CcchhHhHHHHHHHHHHHH
Q 010721 433 SFSVHWVCNFLVGLFFLDLVETF--G-VAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 433 ~~~~~~~g~~~~~~~~g~l~~~~--g-~~~~~~~~~~~~~~~~~~~ 475 (503)
.+..+.++++++|.+.|.+.+.. + |...|.+.+++.+++.++.
T Consensus 401 ~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 401 TGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 99999999999999999988753 2 6667777777776666544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=252.84 Aligned_cols=357 Identities=16% Similarity=0.120 Sum_probs=237.5
Q ss_pred HHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh
Q 010721 95 SNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA 174 (503)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 174 (503)
+++...++...++...|.+.+++|. +..+.|++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGL--SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCC--CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 4566778888889999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHH-HhhccCCCCCchhHHHHHhhHHH
Q 010721 175 HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL-FLGIPAEDDPHWWRTMLYIASLP 253 (503)
Q Consensus 175 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~-~~~~~l~~~~~~wr~~~~~~~~~ 253 (503)
++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++ +++..+.+..+ ||+.|++.+++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGII 159 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 56666666666 99999988877
Q ss_pred HHHHH-HHhccccCChHHHHhcCCh----HH--------------HHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccc
Q 010721 254 GFILA-LGMQFTVESPRWLCKGGML----ND--------------AKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314 (503)
Q Consensus 254 ~~~~~-~~~~~~~~~~~~~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (503)
.++.. +..++.+|+|+....+..+ ++ .+...+...+++............ .........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 237 (379)
T TIGR00881 160 AIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFV--YVVRTGILD 237 (379)
T ss_pred HHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHH--HHHHHHHHH
Confidence 76654 4444566654321110000 00 000001111111110000000000 000000011
Q ss_pred chhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 010721 315 WSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 394 (503)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (503)
+...+........ ....+.......++.+++.++.+++.||..+++...............+....... ......
T Consensus 238 ~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 312 (379)
T TIGR00881 238 WSPLYLTQEKGFS-KEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP----AANPLM 312 (379)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc----chhHHH
Confidence 1111111111110 11245667778888999999999999986433222222111111111111111100 011122
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchh
Q 010721 395 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVY 461 (503)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 461 (503)
.....+..+.+..+..+....+..|.+|++.|+++.|+.+...++|+.++|.+.|.+.|..||+..|
T Consensus 313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 2222222222233334445567889999999999999999999999999999999999999987653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=238.71 Aligned_cols=371 Identities=14% Similarity=0.095 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~ 166 (503)
.....+.+..+...+....+.|.+|.+.++++. +..+.++..+++.++++++++++|+++||+|||++++.+.+++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 93 (413)
T PRK15403 16 FFPMALILYDFAAYLTTDLIQPGIINVVRDFNA--DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL 93 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence 334444555566777888999999999999999 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Q 010721 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (503)
Q Consensus 167 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~ 246 (503)
+++++++++|++.++++|+++|++.+...+...+++.|++++++|+++++++..+..+|..+||++++.+.+..+ ||+.
T Consensus 94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~ 172 (413)
T PRK15403 94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVL 172 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHH
Confidence 999999999999999999999999987777778889999999999999999999999999999999998887767 9999
Q ss_pred HHhhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchh-hhccCcc
Q 010721 247 LYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE-LLEEPHS 324 (503)
Q Consensus 247 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 324 (503)
|++.+++.++..+.. +++||+++...++....+..+..+...+++................ .....+.. ++.+. .
T Consensus 173 f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~--~~~~~~~P~~l~~~-~ 249 (413)
T PRK15403 173 FAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM--MSWVAVSPVILIDA-G 249 (413)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--HHHHHhChHHHHHh-c
Confidence 999888877766543 4578764311111111111222233333322221111100000000 00001111 11111 1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHH-HHHHHHHHHH
Q 010721 325 RVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL-SILGTLFYIF 403 (503)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 403 (503)
.... ...++.......+.+++..+.+.+.++..+++.......+..++.+++....... .+.+. ......++..
T Consensus 250 g~s~-~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~----~~~~~~~~~~~~l~~~ 324 (413)
T PRK15403 250 GMTT-SQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW----PHVWLWSVLGTSLYAF 324 (413)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHH
Confidence 1111 1123444555666677777777766554444443322233333333322211000 01111 1222222333
Q ss_pred HHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHH
Q 010721 404 TFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLS 471 (503)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 471 (503)
+.+.. .|...... ..-....+|++.++.+.....+...++...+++.+. +....|...++++.+.
T Consensus 325 G~~~~-~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 325 GIGLI-FPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHH-hHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 32222 22222111 111222479999999999999999999999988776 5566666555544443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=248.28 Aligned_cols=351 Identities=20% Similarity=0.279 Sum_probs=244.1
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
++..+..+.+..+..+++.....+..|.+.+++|. +..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGL--DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCC--CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 45556666677778888888888899999999999 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ ||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~ 171 (398)
T TIGR00895 93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WR 171 (398)
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877 99
Q ss_pred HHHHhhHHHHHHH-HHHhccccCChHHHHhcCChHHHHHHHHHHcC------------Ccc----hHHHHHHHH------
Q 010721 245 TMLYIASLPGFIL-ALGMQFTVESPRWLCKGGMLNDAKAVIANLWG------------ESE----INKAIEEFQ------ 301 (503)
Q Consensus 245 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~------ 301 (503)
+.|++.+++.++. .+..+++||++++..++ +.++..+..++... ... .........
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (398)
T TIGR00895 172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR 250 (398)
T ss_pred eehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence 9999886555544 44455678876544333 11111111110000 000 000000000
Q ss_pred --------HHHHhcCCCCcccchhhh-ccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHH
Q 010721 302 --------LVIKKDGSDLDSQWSELL-EEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAI 372 (503)
Q Consensus 302 --------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 372 (503)
.............+...+ ....... ...+.......++.+++.++.+++.||+++|+... ...+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 326 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSL---SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHH
Confidence 000000000000011111 1111111 12446677778889999999999999999984443 3333333
Q ss_pred HHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010721 373 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL 451 (503)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 451 (503)
...++.... .+........ ++.+....+..+...+++.|.+|+++|+++.|+.+.+..+|..++|.+.|++
T Consensus 327 ~~~~~~~~~-------~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 327 FAVLVGSTL-------FSPTLLLLLG-AIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHh-------hCHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 333322211 0112222222 2222222233466778899999999999999999999999999999999875
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=239.47 Aligned_cols=343 Identities=29% Similarity=0.340 Sum_probs=269.5
Q ss_pred HHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHH
Q 010721 91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170 (503)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 170 (503)
.+.+..+...++.....+..|.+.+++|. +..+.+++.+.+.++..+++++.|+++||+|||+.+.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGL--SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 45667778888888999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhh
Q 010721 171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA 250 (503)
Q Consensus 171 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~ 250 (503)
..+.++++.++++|++.|++.+...+...+++.|++|+++|++.+++.+....+|..+++.+++.+.+..+ ||+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL 159 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777 99999998
Q ss_pred HHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccch-hhhccC-ccccch
Q 010721 251 SLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS-ELLEEP-HSRVAF 328 (503)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 328 (503)
+++.++..+...+++ |+.. .- .......... ......+. ....+. ....
T Consensus 160 ~~~~~~~~~~~~~~~--~~~~-------------~~---------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-- 210 (352)
T cd06174 160 AILGLLLALLLLFLL--RLLL-------------LL---------ALAFFLLSFG---YYGLLTYLPLYLQEVLGLSA-- 210 (352)
T ss_pred HHHHHHHHHHHHHHH--HHHH-------------HH---------HHHHHHHHhH---HHHHHHHHHHHHHHhcCCCH--
Confidence 888877766655544 1100 00 0000000000 00000011 111111 1111
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHhhcccCCch-HHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhc
Q 010721 329 IGDGALASLLVGVTNFAGALCASYLMDKEGRQK-LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI 407 (503)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (503)
...+.......++..++.++.+++.||+++|+ .+..+..+..++.+.+.... +.........+......
T Consensus 211 -~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~g~~~~ 280 (352)
T cd06174 211 -AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP---------SLALLLVALLLLGFGLG 280 (352)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc---------cHHHHHHHHHHHHHHHh
Confidence 12446677888999999999999999999999 88888888887777766521 12233333333333334
Q ss_pred CccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHH
Q 010721 408 GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 475 (503)
...+....+..|..|+++|++..|+.+...+++..++|.+.+.+.+..+++..+.+.+++.+++.++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 44577788999999999999999999999999999999999999999999999998888887776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=254.88 Aligned_cols=358 Identities=16% Similarity=0.123 Sum_probs=253.5
Q ss_pred HHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
.+..++++.++..++....++.+|.+.+++|. +..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS--SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 35677788899999999999999999999999 8888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Q 010721 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (503)
Q Consensus 168 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~ 247 (503)
.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.+..+ ||+.|
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f 159 (485)
T TIGR00711 81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIF 159 (485)
T ss_pred HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888 99999
Q ss_pred HhhHHHHHHHHHHhc-cccCChHHHHhcCChHHHHHH------------HHHHcCCcc--hHHHHHH--------HHHHH
Q 010721 248 YIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAV------------IANLWGESE--INKAIEE--------FQLVI 304 (503)
Q Consensus 248 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~--~~~~~~~--------~~~~~ 304 (503)
++.++++++..+..+ +.||+++. ++++.+..... ..+-..... ....... .....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV 237 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 998877766654443 45554321 11111110000 000000000 0000000 00000
Q ss_pred HhcCCCCcccchhhhccCccccchhh----------------------------hHHHHHHHHHHHHHHHHHhHHHhhcc
Q 010721 305 KKDGSDLDSQWSELLEEPHSRVAFIG----------------------------DGALASLLVGVTNFAGALCASYLMDK 356 (503)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~g~l~d~ 356 (503)
.............+++++.+....+. ..+.......++.+++.++.|++.||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r 317 (485)
T TIGR00711 238 WELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK 317 (485)
T ss_pred HHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000000111223333332221111 14566677788889999999999999
Q ss_pred cCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHH
Q 010721 357 EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSV 436 (503)
Q Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 436 (503)
+++|+.+.++..+..++..++.+... .+...+.......+...+.+....+ ......+..|+++++++.|+.+..
T Consensus 318 ~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 392 (485)
T TIGR00711 318 IDPRKLVTIGLILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMP-LTTIALSGLPPHKIARGSSLSNFT 392 (485)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHhHHHHHHHHH
Confidence 99999988888777777666542111 0111122222222222222222223 344556778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 010721 437 HWVCNFLVGLFFLDLVETF 455 (503)
Q Consensus 437 ~~~g~~~~~~~~g~l~~~~ 455 (503)
..+|+.+++.+.+.+.++.
T Consensus 393 ~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 393 RQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=239.39 Aligned_cols=358 Identities=16% Similarity=0.165 Sum_probs=239.1
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+.......+........+.+.+|.+.+++|. +..+.++..+.+.++..+++++.|+++||+|||++++++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNA--SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence 3344444555666666777889999999999 88999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHH
Q 010721 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (503)
Q Consensus 169 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~ 248 (503)
+++.++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++.+.+..+ ||+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~ 161 (392)
T PRK10473 83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFY 161 (392)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877777 999999
Q ss_pred hhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCccccc
Q 010721 249 IASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA 327 (503)
Q Consensus 249 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (503)
+.+++.++..+.. ++++|+++.. ++++.+..+..++..+++.................. ...+...+........
T Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~ 237 (392)
T PRK10473 162 TMAAMGILVLLLSLFILKETRPAR--APAASSKPRENSESLLNRFFLSRLVITTLSVTVILT--FVNTSPVLLMEQMGFS 237 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcc--cCCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHH--HHHhCHHHHHHHcCCC
Confidence 9887776665443 4566654221 111111111112222221111100000000000000 0001111100011111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhc
Q 010721 328 FIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI 407 (503)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (503)
. ...+.......+..+++.++.+++.||+++|+.+..+..+..++.+++.... ..+.......+...+++.
T Consensus 238 ~-~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~g~~~ 308 (392)
T PRK10473 238 R-GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP--------SHAVSLFGITLICAGFSV 308 (392)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 0 1234556677888899999999999999999998888877777766665532 112222223333333333
Q ss_pred CccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHH
Q 010721 408 GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 468 (503)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 468 (503)
+... ....+..|.++++ |.......++..+++.+.+++.+..|+.....+.+.+.
T Consensus 309 ~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 309 GFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred HhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3221 2233444544343 44445556777888888888888888765444444433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=238.97 Aligned_cols=376 Identities=14% Similarity=0.079 Sum_probs=236.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+....++.++.........+.++.+.+|+|. +..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.++++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~ 92 (402)
T TIGR00897 15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGL--SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH 92 (402)
T ss_pred hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCC--CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 3444445555555555555566777789998 99999999999999999999999999999999999999999999887
Q ss_pred HHHH---h-hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHH-HHHHHhhccCCCCCchh
Q 010721 169 IISA---Q-AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI-ITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 169 ~~~~---~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~ig~~~~~~l~~~~~~w 243 (503)
+++. + .++++.+++.|+++|++.+...+...+.+.+++|+++|++++|+.+.+.++|. ++++++++.+.+..+ |
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~ 171 (402)
T TIGR00897 93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-E 171 (402)
T ss_pred HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-h
Confidence 7653 3 25888899999999999988888888889999999999999999999999997 689999988887766 6
Q ss_pred HHHHHhhHHHHHHHHHH-hccccCC--hHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhc
Q 010721 244 RTMLYIASLPGFILALG-MQFTVES--PRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLE 320 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (503)
+..++.......+..++ .++.++. |+...++++.++..+..+...+++......... ............+...+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~ 249 (402)
T TIGR00897 172 MNTLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVR--IINTIGLFGFAVFLPMFV 249 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 65555443333332222 2333432 211111111111111122222222221111000 000000000011111111
Q ss_pred cCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHH-hhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHH
Q 010721 321 EPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLI-GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTL 399 (503)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (503)
+. ..... ...+.......++..++.+..|+++||++||+... .+.+...++.+.+....... ..+.+.......
T Consensus 250 ~~-~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~---~~~~~~~~~~~~ 324 (402)
T TIGR00897 250 AE-LGFST-SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF---GHSFAVALIIAI 324 (402)
T ss_pred HH-cCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc---CCcHHHHHHHHH
Confidence 11 11111 11334556677889999999999999999888664 23333333333332221110 001112222222
Q ss_pred HHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHh
Q 010721 400 FYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 477 (503)
+...+. .+..+. .....|..| ++||++.|+.+...++++.++|.+.|.+.+..|+...+++.+++.+++.++..+
T Consensus 325 ~~G~~~-~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 325 ALGIFL-AGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHH-HHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 222222 222333 344556555 579999999999999999999999999999999988888888877776665443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=228.71 Aligned_cols=383 Identities=14% Similarity=0.110 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 165 (503)
.+.+++-.+......+...+.+++.+.+.+|+|+ |+.|.+++.++..+...+..++.|.+.||+|.|++..+++++..
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~L--S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~ 90 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGL--SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL 90 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC--CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHH
Confidence 4446666666667777778888889999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh---hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCch
Q 010721 166 LGAIISAQAH---SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 166 ~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 242 (503)
+.++..+++. +++++++++++.|++.+ .+.....+++.||||+++|.++|++. ..|+|..+..+++..+....+.
T Consensus 91 IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~ 168 (417)
T COG2223 91 IPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF 168 (417)
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh
Confidence 9999999985 44599999999999766 77888889999999999999999999 8999988888888777766663
Q ss_pred --hHHHHHhhHHHHHHHHHHhcc-ccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhh
Q 010721 243 --WRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL 319 (503)
Q Consensus 243 --wr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (503)
||....+..+..++..+..++ +.|.|......++... ..++...++++.......+...+..... ...+...+
T Consensus 169 ~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~~~~v~~~~~~W~lsllY~~tFG~Fvg--fs~~l~~~ 244 (417)
T COG2223 169 LAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQLKAVFSNKDTWLLSLLYFATFGGFVG--FSAYLPMY 244 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--hHHHHHhcCcchHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 999999988888887666655 6666654222221111 3334444444443333222222111100 01222222
Q ss_pred ccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHH-H
Q 010721 320 EEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILG-T 398 (503)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 398 (503)
.+..+..... .++.......+.+.+.++++|+++||+|.+|.+...+..++++..++......... ......... .
T Consensus 245 ~~~~fg~~~~-~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~ 321 (417)
T COG2223 245 LVTQFGLSPV-TAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH--GGSFVVFVAVF 321 (417)
T ss_pred HHHhcCCChh-hHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc--CcchHHHHHHH
Confidence 2222222221 24566778888899999999999999999999999888888888877764321100 011222222 2
Q ss_pred HHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchhHhHHHHHHHHHHHHHh
Q 010721 399 LFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 477 (503)
.....+.+.+.. ..+-++...+|+ +.|.+.|++..++.+|++.-|...|...+.+| +...|+++..+.+++.++.+.
T Consensus 322 l~l~~~~G~GnG-svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 322 LALFVFAGLGNG-SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHHHHhccCcc-hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333333 356778888875 58999999999999999999999999999999 777788888888877776655
Q ss_pred hccC
Q 010721 478 FIVE 481 (503)
Q Consensus 478 ~~~~ 481 (503)
...+
T Consensus 400 ~y~r 403 (417)
T COG2223 400 LYAR 403 (417)
T ss_pred HHHh
Confidence 4443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=239.62 Aligned_cols=359 Identities=14% Similarity=0.052 Sum_probs=247.2
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+++++...++.++..+..++.+|.+++++|+ +..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~--s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTL--TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHh---hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC-----
Q 010721 169 IISAQ---AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP----- 240 (503)
Q Consensus 169 ~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~----- 240 (503)
+++.. .++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..+++.++..+....
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 88654 3689999999999999999999999999999999999999999999999999999999987663221
Q ss_pred --------------------chhHHHHHhhHHHHHHHHHHhcc--ccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHH
Q 010721 241 --------------------HWWRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE 298 (503)
Q Consensus 241 --------------------~~wr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (503)
.+||++|++.+++.++..+...+ .||.++ +++++.+..+..++..+++.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH---SDAKQISFSASLSRLARIRHYREGVI 239 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---cccccccchhhHHHHHhChhHHHHHH
Confidence 13999999888877665544433 444221 11111111111122222222221111
Q ss_pred HHHHHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHH
Q 010721 299 EFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVV 378 (503)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 378 (503)
........+.. ...+...+..+.........+............+|+++++++.||+++|+.+.++.++..+..++..
T Consensus 240 ~~f~yvg~e~~--~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~ 317 (410)
T TIGR00885 240 AQFFYVGVQIM--CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI 317 (410)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 11111111100 0111111111111011111223345555677889999999999999999988877777776666655
Q ss_pred HHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHc---
Q 010721 379 GATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF--- 455 (503)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--- 455 (503)
... .... ...+...+.+....+|..++...+..+++.+..+.++...+ +|+++.|.+.|.+.|..
T Consensus 318 ~~~---------~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~ 385 (410)
T TIGR00885 318 FAG---------GHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIA 385 (410)
T ss_pred HcC---------ChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhccc
Confidence 421 1122 23333334444455588888888988877554455555543 99999999999999964
Q ss_pred ---CCcchhHhHHH
Q 010721 456 ---GVAPVYAGFGG 466 (503)
Q Consensus 456 ---g~~~~~~~~~~ 466 (503)
+++..|++-..
T Consensus 386 ~~~~~~~~~~~~~~ 399 (410)
T TIGR00885 386 AAPAVNTSFILPLL 399 (410)
T ss_pred ccCccchHHHHHHH
Confidence 35556654333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=238.41 Aligned_cols=361 Identities=14% Similarity=0.031 Sum_probs=243.3
Q ss_pred HHHHhhhhhhcccchhhHh-HHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH-HhHHHHHHHHHH
Q 010721 94 MSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLILGAIIS 171 (503)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~ 171 (503)
+..++.++..+...+.+|. +++++|. +..+.|++.+++.++..+.+++.|+++||+|||+.+++ +.++..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRA--RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 4467777888888888886 5688999 89999999999999999999999999999999887654 666667788888
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccch--hhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSL--GTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 172 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
+++++++.+++.|+++|.+.+...|...++..|+.++++|++. .+....+.++|.++|+.+++.+.+..+ ||+.|++
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~ 160 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLT 160 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHH
Confidence 9999999999999999988888888888899999887777654 578888899999999999999988777 9999999
Q ss_pred hHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCccccch
Q 010721 250 ASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328 (503)
Q Consensus 250 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (503)
.+++.++..+.. +++||.|+...++.+..+ .+...+++.................. ...+...+.........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~ 234 (375)
T TIGR00899 161 AALAFVLCGVLVWLFLPSYPRGAPGALTRLE----VRGLLASRDTRLLFVACTLMWGCNIL--YIINMPLLIIHELGLPD 234 (375)
T ss_pred HHHHHHHHHHHHHHhCCCcccCcccccCcch----hhhhhcCcchHHHHHHHHHHHHHHHH--HHhhhHHHHHHHcCCCH
Confidence 888777665554 447876643221111111 11111122111111100000000000 00011111000011111
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHH-HHHHHHHhc
Q 010721 329 IGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGT-LFYIFTFAI 407 (503)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 407 (503)
...+.......+..+++.++.|++.||+++|+.+..+.++..+....+... ++.+..... .+...+.+
T Consensus 235 -~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~g- 303 (375)
T TIGR00899 235 -KLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD---------NSLWALLMLQLLNAIFIG- 303 (375)
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-
Confidence 112334445555667788999999999999998877666554444333321 112222222 12122222
Q ss_pred CccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHH
Q 010721 408 GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 475 (503)
...+....+..|..|++ ++++.|+.+...++|..++|.+.|.+.+..|++..|.+.+++.+++.++.
T Consensus 304 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 304 ILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 22345566777888764 67999999999999999999999999999999988888887776666644
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=235.63 Aligned_cols=351 Identities=15% Similarity=0.093 Sum_probs=238.5
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+..+.+..++..+....+.|.+|.+.+++|. ++.+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 85 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQT--SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS 85 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence 3444444555667778888999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHH
Q 010721 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (503)
Q Consensus 169 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~ 248 (503)
++++++++++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++++.+..+ ||+.|+
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~ 164 (401)
T PRK11043 86 LGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFA 164 (401)
T ss_pred HHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHH
Confidence 9999999999999999999999988888888899999999989999999988999999999999999888777 999999
Q ss_pred hhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchh-hhccCccccc
Q 010721 249 IASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE-LLEEPHSRVA 327 (503)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 327 (503)
+.+++.++..+..++++|+++.. ++++.++..++..+++................ .....+.. ++.......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~g~s~- 237 (401)
T PRK11043 165 TLFAITLLLILPTLRLKPSKKAR----KQSQDALTFKQLLKSKTYLGNVLIFAACSAAF--FAWLTGSPFILEQMGYSP- 237 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcc----ccchHHHHHHHHHcChhHHHHHHHHHHHHHHH--HHHHHHhHHHHHHcCCCH-
Confidence 98888877766665565543211 11111122223222222111100000000000 00001111 111111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhc
Q 010721 328 FIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI 407 (503)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (503)
...+.......++.+++.++.+++.||+++|+..........++.+.+....... ..............+....
T Consensus 238 --~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 311 (401)
T PRK11043 238 --ADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS----HPSLVPLLIPFCVMAAANG 311 (401)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHH
Confidence 1233445556677888999999999999998876655555444443332221111 0112222221222222222
Q ss_pred CccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010721 408 GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 456 (503)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 456 (503)
...+.......+..| +++|++.|+.+.....++..++.+.|.+.+...
T Consensus 312 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 312 AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 334545555556666 569999999999999999999999999877433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=235.82 Aligned_cols=368 Identities=16% Similarity=0.077 Sum_probs=243.8
Q ss_pred HHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 169 (503)
..++++.++..+....+....+.+.++++. ++.+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++++
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~ 83 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHY--PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCL 83 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHH
Confidence 455677777777666666667777889888 888899999999999999999999999999999999999999999998
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 170 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
+++++.+. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++++.+. . |+..+.+
T Consensus 84 ~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~-~~~~~~i 158 (393)
T PRK11195 84 LMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-H-AEAALAV 158 (393)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHH
Confidence 88877664 78899999999999999999999999999999999999999999999999999998874 3 7777777
Q ss_pred hHHHHHHHHHHhccccCChHHHHhcCChH-H----HHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCcc
Q 010721 250 ASLPGFILALGMQFTVESPRWLCKGGMLN-D----AKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324 (503)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (503)
.+...++..+..+.+||+|.....++.+. . -.+..+.+.+++................ .. .......+.....
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l 236 (393)
T PRK11195 159 CALIYLLAALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAG-AT-LRFLVLAWAPVAL 236 (393)
T ss_pred HHHHHHHHHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHc
Confidence 66655555555566777653211111111 0 0011122222222111110000000000 00 0000000000001
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHH
Q 010721 325 RVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFT 404 (503)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (503)
... ....+.......++.+++.+..+++.||.++++.+..+.. .++..+++... ++.+ ......+..+
T Consensus 237 g~s-~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~---------~~~~-~~~~~~~~~G 304 (393)
T PRK11195 237 GIT-LNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ---------HSLL-PAYPLLILIG 304 (393)
T ss_pred CCC-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH---------hHHH-HHHHHHHHHH
Confidence 111 1125567788889999999999999999988877766643 33332222221 1222 2222222233
Q ss_pred HhcCc-cccccccccccCCccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhc
Q 010721 405 FAIGA-GPVTGLVIPELSSNRT-RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFI 479 (503)
Q Consensus 405 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 479 (503)
++.+. .+...+...+..|++. +|++.++.+...+++..++..+.+.+ +..|.+..+.+.+...++...+.+.+.
T Consensus 305 ~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 305 ALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred HhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 2334566677666554 79999999999999999999998854 778887777766655555555444443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=242.50 Aligned_cols=362 Identities=15% Similarity=0.112 Sum_probs=231.3
Q ss_pred HhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHH-----HHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH
Q 010721 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSI-----FIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (503)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (503)
+.+.++...++...+.+.+++..+.++.+.+++.+. ..++..+++++.|+++||+|||++++++.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888887543356666654443 333445789999999999999999999999999999999
Q ss_pred HhhhhHH--------HHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC------
Q 010721 172 AQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE------ 237 (503)
Q Consensus 172 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~------ 237 (503)
+++++++ .++++|+++|++.+...+....++.|++++++|++..++.+.+..+|.+++++++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9998875 47889999999999999999999999999999999999999999999999998775542
Q ss_pred --CCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccc
Q 010721 238 --DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW 315 (503)
Q Consensus 238 --~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (503)
+..+ ||+.|++.+++.++..+.....+|++++..++++.++..+..++..+++.......................+
T Consensus 163 ~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T TIGR00883 163 ALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTY 241 (394)
T ss_pred Hhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345 9999998887777666655567777654332221111111111111111100000000000000000000111
Q ss_pred hhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHH-HHHHHHhcCCCCcchhhHHH
Q 010721 316 SELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISM-LLVVGATSLPLDEDFSHNLS 394 (503)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 394 (503)
...+........ ....+.......+...++.++.|++.||+++|+.+.....+..+.. ..+..... ......
T Consensus 242 ~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 314 (394)
T TIGR00883 242 LPTYLTQTLGLS-ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD------SGSFTL 314 (394)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc------CCchHH
Confidence 111111111111 1124455667788889999999999999999997775554443332 22221111 011122
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHcC-CcchhHhHHH
Q 010721 395 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF-SVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGG 466 (503)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~ 466 (503)
.....+..........+...+++.|.+|++.|+++.++.+ ....+|..++|.+.|.+.+..| +...++....
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 315 FFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 2222222222222334556788899999999999999854 4456788899999999999988 5555444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=241.66 Aligned_cols=341 Identities=23% Similarity=0.260 Sum_probs=238.9
Q ss_pred HHHHHhhhhhhcccchhhH-hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH
Q 010721 93 SMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (503)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (503)
+++.++..++.....+.+| .+.+++|. +..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGL--SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTT--TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 4667778888888899999 89999999 89999999999999999999999999999999999999999999997777
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhH
Q 010721 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251 (503)
Q Consensus 172 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~ 251 (503)
.++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+ ||+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~ 158 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISA 158 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccccccccc
Confidence 7778888999999999999999999999999999999999999999999999999999999999997777 999999999
Q ss_pred HHHHHHHHH-hccccCChHHHHhcCChHH---HHHH----HHHHcCCcchH-HHHHHHHHHHHhcCCCCcccchhhhccC
Q 010721 252 LPGFILALG-MQFTVESPRWLCKGGMLND---AKAV----IANLWGESEIN-KAIEEFQLVIKKDGSDLDSQWSELLEEP 322 (503)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (503)
++.++..++ .++++++++....+.+.++ .++. .+...+++... .............. ...+...+...
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~ 235 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSG---FSFFLPLYLQE 235 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHH---HHHHHHHHCCH
T ss_pred chhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHH---hhcccchhhhh
Confidence 988888664 2444443322211111111 1111 11111111111 00000000000000 12222222111
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHH
Q 010721 323 HSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYI 402 (503)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (503)
.....-....+....+..+...++.++.+++.||+++++..........+..+.+..... ..+........++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 309 (352)
T PF07690_consen 236 VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF------SSSPVWLIIALFLI 309 (352)
T ss_dssp HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH------HCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHH
Confidence 111111123445677788888888999999999999988777766666655555543221 11112222222222
Q ss_pred HHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHH
Q 010721 403 FTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG 445 (503)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~ 445 (503)
+.......+....+..+.+|++++|++.|+.+...++++.++|
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 310 GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2222233567788899999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=238.39 Aligned_cols=375 Identities=14% Similarity=0.089 Sum_probs=250.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-----cchHH-HHHHhH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRT-FQIDTI 162 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~ 162 (503)
...+.+..+..+......++.+|.+.++.|. +..++|.. +.....+ ++.+++|+++||+ |||+. ++.+.+
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~--~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENI--DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 4455566677788888888899999999998 88888886 4444444 6899999999999 99986 557777
Q ss_pred HHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC-
Q 010721 163 PLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED- 238 (503)
Q Consensus 163 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~- 238 (503)
+.+++..++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+
T Consensus 90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~ 169 (491)
T PRK11010 90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR 169 (491)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777775 4788899999999999999999999999999999999999999999999999999999998887
Q ss_pred CCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHH-HHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchh
Q 010721 239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLND-AKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE 317 (503)
Q Consensus 239 ~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (503)
..+ ||..|++.+++.++..+..++.||+++...++++.++ ..+..++..+++................. ....+..
T Consensus 170 ~~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~--~~~~~~~ 246 (491)
T PRK11010 170 YLG-WQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDA--FAMSLTT 246 (491)
T ss_pred ccC-HHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 456 9999999888877776666667776532111111011 11223333322222211111100000000 0011111
Q ss_pred -hhc-cCccccchhhhHHHHH-HHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 010721 318 -LLE-EPHSRVAFIGDGALAS-LLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 394 (503)
Q Consensus 318 -~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (503)
.+. ...+... ..+... ....++.+++.++.|+++||+++|+.+.++.++..+..+.+....... .+....
T Consensus 247 ~~l~~~~G~s~~---~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~----~~~~~l 319 (491)
T PRK11010 247 TFLIRGVGFDAG---EVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD----KNLYSM 319 (491)
T ss_pred HHHHHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc----ccHHHH
Confidence 111 1111111 133443 345578899999999999999998877766655554443332211110 011111
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHH
Q 010721 395 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALF 474 (503)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 474 (503)
.....+....++.+. +...++..+..+++.+++..|+.+....+|+.+++.+.|.+.|..||+..|.+.+++++++.++
T Consensus 320 ~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~ 398 (491)
T PRK11010 320 GAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLL 398 (491)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 111222111122222 2345677788888899999999999999999999999999999999998888888888777665
Q ss_pred HHhh
Q 010721 475 AYYF 478 (503)
Q Consensus 475 ~~~~ 478 (503)
.+..
T Consensus 399 ~~~~ 402 (491)
T PRK11010 399 LLVC 402 (491)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=232.14 Aligned_cols=367 Identities=11% Similarity=0.067 Sum_probs=248.0
Q ss_pred HHHHHHHHHhhhhhhcccchhhH-hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
+..+.+..++..+......+.+| .+++++|+ +..++|++.+.+.+++.+++++.|+++||+|||++++++.++.+++
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~ 86 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSL--SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG 86 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence 34555566777777777777765 45678999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Q 010721 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (503)
Q Consensus 168 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~ 247 (503)
.++.+++++++.++++|++.|.+.+...+...++..|.+++++|++++++.+...++|.++||.+++++.+ .+ |+..|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f 164 (395)
T PRK10054 87 FIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPF 164 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHH
Confidence 99999999999999999999988888888899999999999999999999999999999999999998875 45 99999
Q ss_pred HhhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHH-HHHHHHHHhc-CCCCcccchhhhccCcc
Q 010721 248 YIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAI-EEFQLVIKKD-GSDLDSQWSELLEEPHS 324 (503)
Q Consensus 248 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 324 (503)
++.+++.++..+.. +++||+++.. +.++ +.....++..+++...... .......... .......+.........
T Consensus 165 ~~~~~~~~i~~i~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (395)
T PRK10054 165 WLAAICSAFPLVFIQIWVQRSEKAI--ATET-GSVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDF 241 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc--ccch-hhhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccch
Confidence 98887777665444 3355543211 1111 1111112222222221111 1110000000 00000111111111111
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHH
Q 010721 325 RVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFT 404 (503)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (503)
.. ...+.......+.........+++.||.++|+.+..+..+..++...+.... + ....+.......+
T Consensus 242 ~~---~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~ 309 (395)
T PRK10054 242 AE---KVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG--------N-SLLLWGMSAAVFT 309 (395)
T ss_pred HH---HHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc--------h-HHHHHHHHHHHHH
Confidence 11 1123444555555566677889999999999988888777776665554311 1 1122222222233
Q ss_pred HhcC-ccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHH
Q 010721 405 FAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 405 ~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 475 (503)
.+.+ ..|.....+.+..|++.++++.+..+ ...+|..+||.+.|.+.|+.|+...|++.+.+..+..++.
T Consensus 310 ~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 310 VGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 3322 24566677888899999999998765 6669999999999999999998777776655555444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=230.78 Aligned_cols=360 Identities=13% Similarity=0.048 Sum_probs=238.3
Q ss_pred HHHHHhhhhhhcccchhhH-hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH
Q 010721 93 SMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (503)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (503)
....++.........+.++ .+++++|. +..+.|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~ 93 (400)
T PRK11646 16 LIDNMLVVLGFFVVFPLISIRFVDQLGW--AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM 93 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3455555666566566665 46788999 99999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhH
Q 010721 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251 (503)
Q Consensus 172 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~ 251 (503)
.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+||.+++++. ..+ ||+.|++.+
T Consensus 94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~ 171 (400)
T PRK11646 94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGA 171 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHH
Confidence 999999999999999999999889999999999999999999999999999999999999999988 555 999999987
Q ss_pred HHHHHHHHH-hccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhh-hccCccccchh
Q 010721 252 LPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL-LEEPHSRVAFI 329 (503)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 329 (503)
+..++..+. .++.||.+. +...++..+..++..+++.................. ...+... .++.....
T Consensus 172 ~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~--- 242 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAYKL----STVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQ--VMLMLPIMVNDIAGSP--- 242 (400)
T ss_pred HHHHHHHHHHHHhCCcccc----cccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHH--HHHhhhhhHHhhcCCc---
Confidence 776665433 344554311 111111222223333332221111100000000000 0011111 11111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHhh-cccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcC
Q 010721 330 GDGALASLLVGVTNFAGALCASYLM-DKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG 408 (503)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (503)
...+.......+....+....+++. ||++.++.+..+.++..++.+++.... +.+.......++..+.. .
T Consensus 243 ~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~l~~~g~~-~ 313 (400)
T PRK11646 243 SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------NLQQLFTLICLFYIGSI-I 313 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHH-H
Confidence 1223444455555554444445555 456666666666666666655554321 11112222222222222 2
Q ss_pred ccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcchhHhHHHHHHHHHHH
Q 010721 409 AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG----VAPVYAGFGGVSLLSALF 474 (503)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~ 474 (503)
..|...+++.+..|++++|+++|+.+...++|..++|.+.|.+.|..+ ....+...+++.++..+.
T Consensus 314 ~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 314 AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 335567888899999999999999999999999999999999999753 234455545555555443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=231.08 Aligned_cols=334 Identities=15% Similarity=0.146 Sum_probs=223.2
Q ss_pred hhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHH
Q 010721 101 YHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180 (503)
Q Consensus 101 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l 180 (503)
+...++.|.+|.+.+++|+ ++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus 5 ~~~~~~~p~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGV--SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred hHHHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 4456677899999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHH
Q 010721 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260 (503)
Q Consensus 181 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~ 260 (503)
+++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++.+++.++..+.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887777 999999988777766544
Q ss_pred -hccccCChHHHHhcC-ChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccch-hhhccCccccchhhhHHHHHH
Q 010721 261 -MQFTVESPRWLCKGG-MLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS-ELLEEPHSRVAFIGDGALASL 337 (503)
Q Consensus 261 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 337 (503)
.+++||+++...+++ +.++..+..++..+++.................. ...+. ..+... .... ....+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~s-~~~~g~~~~ 237 (377)
T PRK11102 162 VFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFS--FLTAGPFVYIEL-NGVS-PQNFGYYFA 237 (377)
T ss_pred HHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH--HHHcCHHHHHHH-hCCC-HHHHHHHHH
Confidence 345676543211111 1111122222222222211111000000000000 00000 011111 1111 122456677
Q ss_pred HHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccc
Q 010721 338 LVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVI 417 (503)
Q Consensus 338 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (503)
...++.+++.++.+++.||+|+|+.+..+..+..+..+.+....... ...+.......++..+.. ...+......
T Consensus 238 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 312 (377)
T PRK11102 238 LNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD----LGFWALVVGVAAFVGCVS-MISSNAMAVI 312 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 78888999999999999999999988877765544433332211100 011111222222222222 2223334556
Q ss_pred cccCCcccchhhHHHHHHHHH-HHHHHHHHH
Q 010721 418 PELSSNRTRGKIMGFSFSVHW-VCNFLVGLF 447 (503)
Q Consensus 418 ~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~ 447 (503)
.|..| +.++++.++.+.... ++..+++.+
T Consensus 313 ~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 313 LDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred hcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 67766 679999999887654 444555544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=226.35 Aligned_cols=354 Identities=14% Similarity=0.078 Sum_probs=234.0
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
.++.+.++.+..++..+....+.+.+|.+.+++|. ++.+.+++.+++.+++.++++++|+++||+|||+++.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNV--REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence 34556666666667677778888999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
.++.+++.++++++.+++.|++.|++.+...+....+..|+++++++++++++++.+..+|..++|.+++.+.+..+ ||
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~ 162 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR 162 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence 99999999999999999999999999998888888899999999999999999999999999999999999887777 99
Q ss_pred HHHHhhHHHHHHHHH-HhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCc
Q 010721 245 TMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323 (503)
Q Consensus 245 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
+.|++.++..++..+ ..++.||+++.. +++.+..+..++..+++................... ......++.+ .
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 237 (394)
T PRK11652 163 ACYLFLLLLGAGVTFSMARWMPETRPAD---ARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVF-EACSGVLMGA-V 237 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccCccc---cchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH-HHhChHHHHH-H
Confidence 999998777665543 345577764321 111112222333333322211111000000000000 0000001111 0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Q 010721 324 SRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIF 403 (503)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (503)
..... ...+.......++.+++.++.+++.||.+++.. .......++.+.+....... ....+.......+...
T Consensus 238 ~g~~~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 311 (394)
T PRK11652 238 LGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPGWFG---VMNVWTLLVPAALFFF 311 (394)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence 11111 123344556667777888888888888873222 22222222222221111000 0011222222222222
Q ss_pred HHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 404 TFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 454 (503)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 454 (503)
+.+ ...|....+..|..| +++|++.++.+....+|+.+++.+.+.+.+.
T Consensus 312 g~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 312 GAG-MLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHH-HHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 222 234556666778777 5689999999999999999999988877554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=225.01 Aligned_cols=365 Identities=12% Similarity=0.037 Sum_probs=228.1
Q ss_pred HHHHHHHHHhhhhhhcccchhhHh-HHHhhCCCCCchHHHHHHHHHHH-HHHHHHHhhhhhhhhhcchHHH-HHHhHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTF-QIDTIPLI 165 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~ 165 (503)
.....+..++.++......|.+|. +.+++|. +..++|++.+.+.+ ++.++++++++ +||+|||+.+ +.+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHA--RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGV 93 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHH
Confidence 344555577778887777787766 5788999 89999999876655 66666665666 9999999875 45666667
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCcc--chhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG--SLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
++..+.+++++++.+++.+.+.|...+...+...+++.|+.++++|. ...++.+.+.++|.++||++++.+.+..+ |
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w 172 (393)
T PRK15011 94 LACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-F 172 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-h
Confidence 88888889999999877665555555677888888888888766553 44578889999999999999999988777 9
Q ss_pred HHHHHhhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccC
Q 010721 244 RTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP 322 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (503)
|+.|++.++..++..+.. +++||.++...++.+ + .+..++ ..+............... ......+...+...
T Consensus 173 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~l~~ 245 (393)
T PRK15011 173 TVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--T-LEAPRR--NRRDTLLLFVICTLMWGT--NSLYIINMPLFIIN 245 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--c-cccccc--ccccHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 999999888777665444 457776431111000 0 000000 001000000000000000 00001111111111
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHH
Q 010721 323 HSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYI 402 (503)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (503)
...... ...+.......+..+++.++.|+++||+++|+.+..+.....+....+.. . .+.+..+....+..
T Consensus 246 ~~~~~~-~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~l~~~~l~~ 316 (393)
T PRK15011 246 ELHLPE-KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM-A-------HSPAILLGLQLLNA 316 (393)
T ss_pred HcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-H-------hhHHHHHHHHHHHH
Confidence 111111 12334445556677888999999999999998777665544443332221 1 01111111111111
Q ss_pred HHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHH
Q 010721 403 FTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 475 (503)
...+.. .+....+..|..|+ +++++.++++...++|..++|.+.|.+.+..|++..+.+.+++.+++.++.
T Consensus 317 ~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK15011 317 IYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL 387 (393)
T ss_pred HHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 111111 12234556788885 499999999999999999999999999999999888877776666655544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=221.56 Aligned_cols=360 Identities=11% Similarity=-0.001 Sum_probs=242.1
Q ss_pred HHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHH----HHHhHHHHH
Q 010721 91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF----QIDTIPLIL 166 (503)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~~ 166 (503)
.+.+.++...+..+...|.+|.+.+++|. +..++|++.+++.+...++++++|+++||+|||+.. .++..+..+
T Consensus 8 ~l~~~~~~~~~~~~~~~p~l~~~l~~~g~--s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~ 85 (382)
T TIGR00902 8 WLALGFFGYFCAYGIFLPFFPAWLKGIGL--GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 35566777777788899999999999999 999999999999999999999999999999985433 222222222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Q 010721 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (503)
Q Consensus 167 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~ 246 (503)
..+..+++++.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|++++.+.+..+ ||..
T Consensus 86 --~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~ 160 (382)
T TIGR00902 86 --AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNI 160 (382)
T ss_pred --HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHH
Confidence 2445678999999999999999998899988887765 4678999999999999999999999999998888 9999
Q ss_pred HHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchh-hhccCccc
Q 010721 247 LYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE-LLEEPHSR 325 (503)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 325 (503)
|++..+..++..+.....++.++....++++.+..+..++..+++............... ......+.. .+++....
T Consensus 161 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~--~~~~~~~~~~~l~~~g~s 238 (382)
T TIGR00902 161 LAILTAGLAFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGA--HAAYYGFSAIYWQAAGIS 238 (382)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCC
Confidence 988765543333333323321211111101111111222333333222111111110000 000111222 22222221
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH
Q 010721 326 VAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF 405 (503)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (503)
.. ..+....+..+..+++.++.+++.||++.|+.+.++.+...+...++.+.. +.+..+....+....+
T Consensus 239 ~~---~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~q~l~g~~~ 307 (382)
T TIGR00902 239 AS---ATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--------AFPLIFLLQILHCGTF 307 (382)
T ss_pred Hh---HHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--------hHHHHHHHHHHHHHHH
Confidence 11 234556678888888999999999999999999999888888877765521 2222333334444444
Q ss_pred hcCccccccccccccCCcccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHH
Q 010721 406 AIGAGPVTGLVIPELSSNRTRGKIMGFSFS-VHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL 473 (503)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 473 (503)
+. ..+....++.+. |++++++++++++. ...+|..++|.+.|.+.|..|+ ..|.+.+++.+++.+
T Consensus 308 ~~-~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 308 AV-CHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HH-HHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 33 234456677777 88889999999874 5669999999999999999985 567777777665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-28 Score=231.17 Aligned_cols=365 Identities=16% Similarity=0.114 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHhhhhhhcccc-hhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMN-GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
+.++..++...+....+...++ ..+..+.+|.+. ...+.+.+.++|+++++++++++|.+.||++-.+.+....+++
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~--~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w 121 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKL--VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW 121 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCccccch--hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence 4445555555666666654433 334556788888 8888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC------C
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE------D 238 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~------~ 238 (503)
++..++....+|++.+++.|+++|+.++..+|....+++.||.++||++.++++.++.++|.++|++++..+. .
T Consensus 122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 9999888889999999999999999999999999999999999999999999999999999999999998853 2
Q ss_pred CCchhHHHHHhhHHHHHHHHHHh-ccccCChHH--HHhcCChHHHHHHHHHHcCCc----chHHHH-----------HHH
Q 010721 239 DPHWWRTMLYIASLPGFILALGM-QFTVESPRW--LCKGGMLNDAKAVIANLWGES----EINKAI-----------EEF 300 (503)
Q Consensus 239 ~~~~wr~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----------~~~ 300 (503)
..+ |||.|++.+++.++..++. +++|+.|.. ...++++.-..+..++..... ...... ...
T Consensus 202 ~~g-W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l 280 (495)
T KOG2533|consen 202 LAG-WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSL 280 (495)
T ss_pred cCC-ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHH
Confidence 334 9999999999988886555 558988862 111111111111111111111 000000 011
Q ss_pred HHHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhccc----CCchHHHhhHHHHHHHH-H
Q 010721 301 QLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKE----GRQKLLIGSYLGMAISM-L 375 (503)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----g~~~~~~~~~~~~~~~~-~ 375 (503)
..............|..++-....... ...+..+.....++++++.++.|+++||+ .+|........+..+.. +
T Consensus 281 ~~~~~~lv~~~~~~~lpl~l~~~~~~s-~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~ 359 (495)
T KOG2533|consen 281 CYFFLKLVNYGFSYWLPLYLKSNGGYS-ELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAI 359 (495)
T ss_pred HHHHHhhccccHHHHHHHHHHcCCCcC-hHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 111122222223444444443321111 12355778889999999999999999994 44444443333333332 3
Q ss_pred HHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcC-ccccccccccccCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHH-H
Q 010721 376 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNR-TRGKIMGFSFSVHWVCNFLVGLFFLDL-V 452 (503)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~~~~~~g~l-~ 452 (503)
.+... .........++.+.++.. ..+......++....+ .+-+..++.....+.++.++|.+.-.. .
T Consensus 360 ~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a 429 (495)
T KOG2533|consen 360 SLLAA----------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA 429 (495)
T ss_pred HHHhh----------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC
Confidence 33321 111111111122222211 2234445555544443 344444444445555555555544332 2
Q ss_pred HHcCCcchhHhH
Q 010721 453 ETFGVAPVYAGF 464 (503)
Q Consensus 453 ~~~g~~~~~~~~ 464 (503)
..+++...|...
T Consensus 430 p~y~~~~~f~~~ 441 (495)
T KOG2533|consen 430 PRYGWGAVFYML 441 (495)
T ss_pred cchhhhhHHHHH
Confidence 335666667433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=230.73 Aligned_cols=338 Identities=20% Similarity=0.226 Sum_probs=241.9
Q ss_pred HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhh
Q 010721 114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGI 191 (503)
Q Consensus 114 ~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~ 191 (503)
..++++ ++.+.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.
T Consensus 65 ~~~~~w--s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~ 142 (466)
T KOG2532|consen 65 AGEYDW--SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ 142 (466)
T ss_pred CceecC--CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence 345666 889999999999999999999999999999999999999999999999999874 5557799999999999
Q ss_pred hhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC-CchhHHHHHhhHHHHHHHHHHhcc-ccCChH
Q 010721 192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD-PHWWRTMLYIASLPGFILALGMQF-TVESPR 269 (503)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~-~~~wr~~~~~~~~~~~~~~~~~~~-~~~~~~ 269 (503)
|..+|+...+.+.|.|++||++..++...+..+|.+++.++++++.+. .| |++.|++.++++++..+++++ ..|+|.
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999998 66 999999999999988777755 567775
Q ss_pred HHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCccccchhhh------------------
Q 010721 270 WLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGD------------------ 331 (503)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 331 (503)
.. +.-.+++.+.+++-..... ........|+.+++++.++...+..
T Consensus 222 ~h--~~is~~El~~I~~~k~~~~--------------~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~ 285 (466)
T KOG2532|consen 222 KH--PNISEKELKYIEKGKSEAH--------------VKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYL 285 (466)
T ss_pred cC--CCCCHHHHHHHHhcccccc--------------cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 31 1111111111111100000 0000124455555555444333322
Q ss_pred ----------HHHHHHHHHHHHHHHHHhHHHhhcccCCc---------hHHHhhHHHHHHHHHHHHHHhcCCCCcchhhH
Q 010721 332 ----------GALASLLVGVTNFAGALCASYLMDKEGRQ---------KLLIGSYLGMAISMLLVVGATSLPLDEDFSHN 392 (503)
Q Consensus 332 ----------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (503)
.++..++..+...+..++.|.++||+.+| ..-.++....+++++.+.+... ...+
T Consensus 286 ~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~------~~~~ 359 (466)
T KOG2532|consen 286 KEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD------EHRL 359 (466)
T ss_pred HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC------Ccch
Confidence 67788899999999999999999998653 1223344444444444444221 1111
Q ss_pred HHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH---HcCCcchhHhHHHHHH
Q 010721 393 LSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE---TFGVAPVYAGFGGVSL 469 (503)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~ 469 (503)
..+....+ ..++.....+-.+.-..+.. +++.+..+|+.+.+..+.++++|.+.|.+.. ...|+..|++.+++.+
T Consensus 360 ~a~~~l~~-~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~ 437 (466)
T KOG2532|consen 360 LAVILLTI-AIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILI 437 (466)
T ss_pred HHHHHHHH-HHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHH
Confidence 22222222 22222222222233333434 5679999999999999999999999999984 2358899999999888
Q ss_pred HHHHHHHhh
Q 010721 470 LSALFAYYF 478 (503)
Q Consensus 470 ~~~~~~~~~ 478 (503)
++.++..++
T Consensus 438 ~~~i~f~~f 446 (466)
T KOG2532|consen 438 VGNIIFLFF 446 (466)
T ss_pred HhchheeEe
Confidence 887654443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=223.35 Aligned_cols=374 Identities=14% Similarity=0.057 Sum_probs=224.7
Q ss_pred HHHHHHHHhhhhhhcccchhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+.+.+..++..+..+...+.+|.+ .+++|+ +..+.|++.+++.+++.++++++|+++||+|||++++++..+.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 90 (420)
T PRK09528 13 WIFSLFFFFFFFIWSSWFSFFPIWLHDINGL--SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLF 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 344445555566556666777655 455899 99999999999999999999999999999999999988766655543
Q ss_pred HHHH---hhh-----hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 169 IISA---QAH-----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 169 ~~~~---~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
.... .++ .+...++++++.|.+.....+....+..+ . .+++++.++......++|..++|++++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~- 167 (420)
T PRK09528 91 GPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI- 167 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-
Confidence 3221 111 11112233344443333333333333322 2 24578888999999999999999999988754
Q ss_pred chhHHHHHhhHHHHHHHHHHhcccc-CChHHHHhcCC-----hHHHHHHHHHHcCCcchHHHHH-HHHHH--HHhcCCCC
Q 010721 241 HWWRTMLYIASLPGFILALGMQFTV-ESPRWLCKGGM-----LNDAKAVIANLWGESEINKAIE-EFQLV--IKKDGSDL 311 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~ 311 (503)
+ |++.|++.+++.++..+..++.+ |+++....+++ +....+...+..+++....... ..... ........
T Consensus 168 ~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~ 246 (420)
T PRK09528 168 N-PQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQF 246 (420)
T ss_pred C-chHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHH
Confidence 4 99999998888777766665543 33322111000 0001111112222221111000 00000 00000000
Q ss_pred cccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhh
Q 010721 312 DSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSH 391 (503)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (503)
.....+.+....... ...+...++..+...++.++.|++.||+++|+.+..+.++..++.+++.+.. +
T Consensus 247 ~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--------~- 314 (420)
T PRK09528 247 PNFFASFFATPEQGT---RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--------G- 314 (420)
T ss_pred HHHHHHHHhccCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--------c-
Confidence 000111111111111 1234556666777889999999999999999998888887777666655421 1
Q ss_pred HHHHHHHHHHHHHHhcC-ccccccccccccCCcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHH
Q 010721 392 NLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGF-SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSL 469 (503)
Q Consensus 392 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 469 (503)
...+.....+ .+...+ ..+....++.+.+|++.+++..++ .+....+|.+++|.+.|++.|..|++..|.+.+++.+
T Consensus 315 ~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~ 393 (420)
T PRK09528 315 PLEVSILKLL-HAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVL 393 (420)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 2222222222 222221 123345677888899989888766 5677889999999999999999999999998888877
Q ss_pred HHHHHHHhhccCC
Q 010721 470 LSALFAYYFIVET 482 (503)
Q Consensus 470 ~~~~~~~~~~~~~ 482 (503)
+..++.+...++.
T Consensus 394 i~~~~~~~~~~~~ 406 (420)
T PRK09528 394 LFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHhcCC
Confidence 7766665555543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=219.13 Aligned_cols=375 Identities=14% Similarity=0.056 Sum_probs=237.5
Q ss_pred HHHHHHhhhhhhcccchhh-HhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcc-hHHHHHHhHHHHHHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDTIPLILGAI 169 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~ 169 (503)
+++..|+.....+...|.+ +.+.+++|+ +..++|++.+++.++..++++++|+++||+|| |+++.++.++..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHF--SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4555666666666664444 666787899 99999999999999999999999999999965 7788889999989988
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhh--------hcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc
Q 010721 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYIS--------EVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (503)
Q Consensus 170 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 241 (503)
+..+.++++.+++.|++.|++.+...+...++.. |......|.+.+| .+|.++||++++.+.....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~ 158 (418)
T TIGR00889 85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS 158 (418)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence 8899999999999999999988777776665532 2222233555555 3677888888776643323
Q ss_pred hhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHH--HHHHHHcCCcchHHH-HHHHHHHHHhcCCCCcccchhh
Q 010721 242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK--AVIANLWGESEINKA-IEEFQLVIKKDGSDLDSQWSEL 318 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 318 (503)
|+. |++.++..++..+..+++||+|+...+++...+.. ...++..+++..... .............. ......
T Consensus 159 -~~~-f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 234 (418)
T TIGR00889 159 -NIQ-LYITAGSSALLGVFALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITN--IFGNGF 234 (418)
T ss_pred -hHH-HHHHHHHHHHHHHHHhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHH--HhHHHH
Confidence 554 44555555555555667888753211111111100 011122222221111 11000000000000 000011
Q ss_pred hccCcccc-----chhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHH
Q 010721 319 LEEPHSRV-----AFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 393 (503)
Q Consensus 319 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (503)
+.+..... ......+...++..+..+++.+..+++.||+|+|+.+..+.++..++..++..... .....
T Consensus 235 ~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~------~~~~~ 308 (418)
T TIGR00889 235 LHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP------EYFGY 308 (418)
T ss_pred HHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc------chhhH
Confidence 11111000 01122456677788888999999999999999999999988888777655544110 01011
Q ss_pred HHHHHHHHHHHHhc-CccccccccccccCCcccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHc------CCcchhHhHH
Q 010721 394 SILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSF-SVHWVCNFLVGLFFLDLVETF------GVAPVYAGFG 465 (503)
Q Consensus 394 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~ 465 (503)
..+....+..+.+. ...+....++.|.+|++.|++++|+.+ ....+|.+++|.+.|.+.|.. ||+..|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 11222222222222 223555677899999999999999997 567799999999999999985 4777888888
Q ss_pred HHHHHHHHHHHhhccCCCC
Q 010721 466 GVSLLSALFAYYFIVETKG 484 (503)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~ 484 (503)
++.++.+++.+++.+++++
T Consensus 389 ~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHhCCccc
Confidence 8888888877777776644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-26 Score=218.21 Aligned_cols=368 Identities=15% Similarity=0.053 Sum_probs=238.8
Q ss_pred HHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-----cchH-HHHHHhHHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRR-TFQIDTIPLI 165 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~ 165 (503)
....++..++........+|.+.++.|+ +..++|++..+... .+.++++|+++||+ |||| .+.++.++.+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~--~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTVEGL--DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHH
Confidence 3445677788888888999999999999 99999999777776 59999999999999 8876 6888888888
Q ss_pred HHHHHHHhh---hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC-c
Q 010721 166 LGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-H 241 (503)
Q Consensus 166 ~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~-~ 241 (503)
++..+.++. .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+.. +
T Consensus 80 l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g 159 (402)
T PRK11902 80 ASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG 159 (402)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 888887776 457888888888899999999999999999999999999999999999999999999988887754 5
Q ss_pred hhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCC-hHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhh-
Q 010721 242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGM-LNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL- 319 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (503)
||..|++.+++.++..+..++.||+++...++++ .++..+..++..+++.................... ......+
T Consensus 160 -w~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~~l~ 237 (402)
T PRK11902 160 -WGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAG-SLSTTFLI 237 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHH-HHHHHHHH
Confidence 9999999888777666655667765432111111 01122233333333332221111111000000000 0000111
Q ss_pred ccCccccchhhhHHHHHHHH-HHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHH
Q 010721 320 EEPHSRVAFIGDGALASLLV-GVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGT 398 (503)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (503)
........ ..+...... .++.+++.++.+++.||+++|+.+..+..+..+..+.+......+ .+.+......
T Consensus 238 ~~~G~~~~---~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~----~~~~~~~~~~ 310 (402)
T PRK11902 238 RGAGFSAG---EVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP----KHLWTMALAI 310 (402)
T ss_pred HhcCCCHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CcHHHHHHHH
Confidence 11111111 122333333 345788999999999999999887766666555544332211111 0112111111
Q ss_pred HH--HHHHHh-cCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHH
Q 010721 399 LF--YIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 399 ~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 475 (503)
.+ +..+.. .........++.+.+|.+ ..++.+....++..+++.+.|.+.|..|++..|.+.+.+++++.++.
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 11 111121 112334455666666644 45666666677887777899999999999988888887777766554
Q ss_pred H
Q 010721 476 Y 476 (503)
Q Consensus 476 ~ 476 (503)
+
T Consensus 387 ~ 387 (402)
T PRK11902 387 W 387 (402)
T ss_pred H
Confidence 3
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=223.02 Aligned_cols=386 Identities=13% Similarity=0.096 Sum_probs=250.8
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHH-h--hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHhHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAK-E--LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPL 164 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~--~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~ 164 (503)
++.+.+..++..+......+.+|.+.+ + +|+ +..+.+++.+.+.+++.++++++|+++|| +|||++++++.++.
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~--s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGF--SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 455556667777777666777776654 4 788 89999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCC---ccchhhHHHHHHHHHHHHHHHhhccCCCCCc
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY---RGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 241 (503)
+++.++.+++++++.++++|++.|+|.|...+...++++|++|+++ |+.++++++.+.++|.++||++++++.+..+
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998764 8889999999999999999999999988777
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccc----CChHHHHh-cCChHHHHHHHH-----------H-------------------
Q 010721 242 WWRTMLYIASLPGFILALGMQFTV----ESPRWLCK-GGMLNDAKAVIA-----------N------------------- 286 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~-----------~------------------- 286 (503)
|++.|++.++..++..+..++.+ +.|+.... +.++.+..+... .
T Consensus 170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (475)
T TIGR00924 170 -YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTL 248 (475)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999997765555444333322 21110000 000000000000 0
Q ss_pred ---------HcCC-cchHHHHH--HHH--------HHHHhcCCCCcccchhhhccCccccc---hhhhHHHHHHHHHHHH
Q 010721 287 ---------LWGE-SEINKAIE--EFQ--------LVIKKDGSDLDSQWSELLEEPHSRVA---FIGDGALASLLVGVTN 343 (503)
Q Consensus 287 ---------~~~~-~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 343 (503)
..+. ....+... ... ......+. .+...++........ ...-.+.+.++..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~---~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~i 325 (475)
T TIGR00924 249 AVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQM---PTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWV 325 (475)
T ss_pred HHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHhccccccceEECHHHHHhhhHHHH
Confidence 0000 00000000 000 00000000 000001100000000 0001445566666666
Q ss_pred HHHHHhHHHhhcccCC-----chHH--HhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcccccccc
Q 010721 344 FAGALCASYLMDKEGR-----QKLL--IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLV 416 (503)
Q Consensus 344 ~~~~~~~g~l~d~~g~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (503)
++..++..++..|++| +... .++.++.+++++.+.+...........+.++++...++.........|....+
T Consensus 326 il~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~ 405 (475)
T TIGR00924 326 VVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSW 405 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7666665543333332 3333 56777777776666543211111111233444444444444445556888899
Q ss_pred ccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhcc
Q 010721 417 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 480 (503)
Q Consensus 417 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 480 (503)
..+..|++.||+++|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus 406 ~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 406 WTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888777777777777777777766666555444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=215.48 Aligned_cols=331 Identities=17% Similarity=0.185 Sum_probs=221.5
Q ss_pred hhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHH
Q 010721 102 HIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEML 181 (503)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 181 (503)
.....++.+|.+.+++|. +..+.|++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.++
T Consensus 15 ~~~~~~~~lp~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~ 91 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGM--SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLF 91 (355)
T ss_pred ccccCcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence 345678899999999999 99999999999999999999999999999999999999999988888877 778999999
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCch-hHHHHHhhHHHHHHHHHH
Q 010721 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-WRTMLYIASLPGFILALG 260 (503)
Q Consensus 182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~-wr~~~~~~~~~~~~~~~~ 260 (503)
+.|++.|++.+...+....++.|+++ ++|++++++++.+.++|..+++.+++.+.+..+. ||+.|.+.+++.++..+.
T Consensus 92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~ 170 (355)
T TIGR00896 92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA 170 (355)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888889999996 5799999999999999999999998887765433 999998766654443322
Q ss_pred hccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchh-hhccCccccchhhhHHHHHHHH
Q 010721 261 MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE-LLEEPHSRVAFIGDGALASLLV 339 (503)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 339 (503)
++|+.++...++ +.. .....++..+++.......... ...........|.. .+++.... ....+...+..
T Consensus 171 --~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lp~~~~~~g~~---~~~~g~~~~~~ 241 (355)
T TIGR00896 171 --WIPQVRRRVAAN-QTT-TRLTPVRIWRSPLAWQVTVFFG--LQSGLYYSLIGWLPAILISHGAS---AATAGSLLALM 241 (355)
T ss_pred --HhhhhccccCCC-CCC-CCCCCchhhcCHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHH
Confidence 233322110000 000 0000111111111111100000 00000000011221 22221111 12345677788
Q ss_pred HHHHHHHHHhHHHhhcccC-CchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCc-cccccccc
Q 010721 340 GVTNFAGALCASYLMDKEG-RQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVI 417 (503)
Q Consensus 340 ~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 417 (503)
.++.++++++.|++.||++ +|+.+..+.++..++.+.+.+.. ...... ...+ .+++.+. .+.....+
T Consensus 242 ~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~l--~g~~~g~~~~~~~~~~ 310 (355)
T TIGR00896 242 QLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--------MHGLWA-WALV--LGLGQGGAFPLALTLI 310 (355)
T ss_pred HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--------hhHHHH-HHHH--HHHhhhhHhHHHHHHH
Confidence 9999999999999999994 55566666666666655554422 111111 1222 2223222 34444444
Q ss_pred ccc-CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010721 418 PEL-SSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 456 (503)
Q Consensus 418 ~~~-~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 456 (503)
.+. .+++.++...++.+.+.+++.+++|.+.|.+.|..|
T Consensus 311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 311 GLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443 445677999999999999999999999999999887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=214.85 Aligned_cols=343 Identities=15% Similarity=0.075 Sum_probs=232.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhh
Q 010721 119 FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLV 198 (503)
Q Consensus 119 ~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 198 (503)
.+.++.++|++.+++.+.+.+.+++.|.+.||+|+|..+++|++++..+++++++.++|+.+++.|.+||+|.++..++.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 33467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCC-ccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCCh
Q 010721 199 PIYISEVAPTKY-RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGML 277 (503)
Q Consensus 199 ~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (503)
.++++|.||+++ |++++|+...+.++|.++||.+|+.+.+..| .+.+|++.+++.++-..+.+++.|..+. +++.
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~~---~~~~ 256 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTEM---DPDS 256 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCcccc---Cccc
Confidence 999999999775 7999999999999999999999999999988 9999999999999988777775543221 1111
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHH---HHhcCCCCcccc-hhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHh
Q 010721 278 NDAKAVIANLWGESEINKAIEEFQLV---IKKDGSDLDSQW-SELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYL 353 (503)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 353 (503)
.+......++..++............ ....... ...| .+-+..+.+. .+.......+...++..+.|.+
T Consensus 257 ~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePt-lslwm~e~m~~p~w~------~G~~fLp~~~~y~ig~~lfg~l 329 (464)
T KOG3764|consen 257 TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPT-LSLWMLETMFTPGWE------VGLAFLPASLSYAIGTNLFGKL 329 (464)
T ss_pred cccCccHHHHHhCchHhhhhcchhhccchHHHhCcc-cHHHHHHhccCCCcc------eeeeecccccchhccCchHHHH
Confidence 11111122222222221111110000 0000000 0111 1111222211 1233455677778999999999
Q ss_pred hcccCCchHHHhhHHHHHHH--HHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcc---cchh
Q 010721 354 MDKEGRQKLLIGSYLGMAIS--MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR---TRGK 428 (503)
Q Consensus 354 ~d~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 428 (503)
.||++..+.+.....+..++ +....+.... ...+.......+.+........|.. .+..|....+ .-|.
T Consensus 330 a~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~-----~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGs 403 (464)
T KOG3764|consen 330 ADKYPHLRWLLSLGGLATVGVSSGPIPFATSI-----AQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGS 403 (464)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhchhHhhhhH-----HHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeee
Confidence 99999544333332222233 2222221110 0112222222222222223333433 3333433333 6789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhh
Q 010721 429 IMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 478 (503)
Q Consensus 429 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 478 (503)
+.++......+|.++||.+.|.+.+..|++|...+.+...++.+-++.++
T Consensus 404 VyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 404 VYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888887777655443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=220.41 Aligned_cols=338 Identities=18% Similarity=0.130 Sum_probs=214.2
Q ss_pred HHHHHHHHhhhhhhcccchhhHh-HHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+..+++.+........+.+.+|. +++++|+ ++.+.+++.+++.+++++++++.|+++||+|||++++++.++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGL--STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCC--CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45666667777777888899995 9999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh-hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC---------
Q 010721 169 IISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED--------- 238 (503)
Q Consensus 169 ~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~--------- 238 (503)
+++++++ +++.+++.|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 82 LWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999 999999999999999664 56678899999999999999999987777777777666654432
Q ss_pred -CCchhHHHH-HhhHHHHHHH-HHHhccccCChHHHHhcCChHHH----------HHHHHHHcCCcchHHHHHHHHHHHH
Q 010721 239 -DPHWWRTML-YIASLPGFIL-ALGMQFTVESPRWLCKGGMLNDA----------KAVIANLWGESEINKAIEEFQLVIK 305 (503)
Q Consensus 239 -~~~~wr~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (503)
..+ ||+.| +..+++..+. .+...+.+|+|+...++++.+.. .+...+..+++..............
T Consensus 161 ~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (366)
T TIGR00886 161 AHLA-WGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFG 239 (366)
T ss_pred cccc-ccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHH
Confidence 224 99999 4434444433 33334455554321111000000 0011111111111110000000000
Q ss_pred hcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCC
Q 010721 306 KDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL 385 (503)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (503)
.. .....+...+....+.... ...+....+..+..++++++.|++.||+++|+.+..+.....++..++......
T Consensus 240 ~~--~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 314 (366)
T TIGR00886 240 SF--LGVSSIFAMFFKDQFGLSK-VTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVS-- 314 (366)
T ss_pred HH--HHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCC--
Confidence 00 0001111111111111111 124456667788889999999999999999888777766655555544432110
Q ss_pred CcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHH
Q 010721 386 DEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVC 440 (503)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 440 (503)
.......+....+.....+.+ .+..+....+..| +++|++.|+.+...++|
T Consensus 315 --~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 315 --PLSLAVFIVLFVALFFFSGAG-NGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred --cchHHHHHHHHHHHHHHhccc-cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 001111112222222222222 2345667778877 57999999999987765
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=200.19 Aligned_cols=364 Identities=17% Similarity=0.113 Sum_probs=264.2
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+..++...++.++......+.+|.+++.|++ +..+++++...++.||.+.+++.|++.+|+|+|+-+++|+.++++++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~l--s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDL--TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5677777889999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHH---hhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC------
Q 010721 169 IISA---QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD------ 239 (503)
Q Consensus 169 ~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~------ 239 (503)
.+.. ...+|..++++-|+.|.|.+...++++.+++...++++..+.+++.+..+++|.+++|++++.+...
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 9984 5589999999999999999999999999999999998889999999999999999999999887662
Q ss_pred ------------CchhHHHHHhhHHHHHHHHHHhcc--ccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 010721 240 ------------PHWWRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIK 305 (503)
Q Consensus 240 ------------~~~wr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (503)
...||++|...+...++..+.... .|+.+....++.+.++. ...+..+.+..............
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~--~~~~l~~~~~~~~gvl~~FlYVG 250 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSA--GLSSLFQNKHLRLGVLAIFLYVG 250 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccc--hHHHHHhChHHHHHHHHHHHHHh
Confidence 112888898877777766655544 45443221111111111 12222222222221111111111
Q ss_pred hcCCCCcccch-hhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCC
Q 010721 306 KDGSDLDSQWS-ELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP 384 (503)
Q Consensus 306 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (503)
.+... .+|. .++.+. . ...-..+....+.++.+.++|++++.++..|+...+.+.+..++..+.++...+..
T Consensus 251 ~Eva~--gsfl~~y~~~~-~-g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~--- 323 (422)
T COG0738 251 AEVAI--GSFLVSYLEEL-L-GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG--- 323 (422)
T ss_pred HHHHH--HHHHHHHHHhc-C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 11100 1111 111111 1 11112355778889999999999999999999998888877766666666655522
Q ss_pred CCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhH
Q 010721 385 LDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGF 464 (503)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 464 (503)
....+....+++.+....+|..++...+..| + .....|..-.+.-+|+++.|++.|++.|..|....+...
T Consensus 324 -------g~v~~~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~ 394 (422)
T COG0738 324 -------GVVALYALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIV 394 (422)
T ss_pred -------ChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHH
Confidence 2344445555566666678888898889888 3 344445555556699999999999999999977766655
Q ss_pred HHHHHHHH
Q 010721 465 GGVSLLSA 472 (503)
Q Consensus 465 ~~~~~~~~ 472 (503)
..+|.+..
T Consensus 395 pllc~lyV 402 (422)
T COG0738 395 PLLCYLYV 402 (422)
T ss_pred HHHHHHHH
Confidence 55555544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=243.17 Aligned_cols=366 Identities=16% Similarity=0.048 Sum_probs=231.8
Q ss_pred HHHHhhhhhh-cccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHH
Q 010721 94 MSNFLFGYHI-GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA 172 (503)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 172 (503)
++.++..+.. .......+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~ 95 (1146)
T PRK08633 16 LTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIV 95 (1146)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 333444566677777754556689999999999999999999999999999999998877666655544
Q ss_pred ---hhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC--------Cc
Q 010721 173 ---QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD--------PH 241 (503)
Q Consensus 173 ---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~--------~~ 241 (503)
.+++++.++++|+++|++.+...++..+++.|++++++|++++++++.+..+|.++|+++++++... .+
T Consensus 96 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 96 LAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 4578999999999999999999999999999999999999999999999999999999999988765 23
Q ss_pred hhHHHHHhhHHH-HHHHHHHhccccCChHHHHhc---C---ChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccc
Q 010721 242 WWRTMLYIASLP-GFILALGMQFTVESPRWLCKG---G---MLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314 (503)
Q Consensus 242 ~wr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (503)
+|++.+.+..+. .++.+++.+++||.|.....+ . ...+..+..+.+.+.+.................. ...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~ 253 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQL--AQA 253 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH--HHH
Confidence 355555444333 333444455567765432111 0 0111112223333332222111110000000000 001
Q ss_pred chhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 010721 315 WSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 394 (503)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (503)
+...+.............+++.+...++.+++.++.+++.||+++++.+.++.++.+++.+++.+.. ....
T Consensus 254 ~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 324 (1146)
T PRK08633 254 NFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP---------SLAS 324 (1146)
T ss_pred hhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh---------hHHH
Confidence 1111111111111111345667778888999999999999999998888877777766666555421 1122
Q ss_pred HHHHHHHHHHHhcC-ccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cchhHhHHHHHHHH
Q 010721 395 ILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGV--APVYAGFGGVSLLS 471 (503)
Q Consensus 395 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~ 471 (503)
.+ +..+..+++.+ ..+...+++.+..|++.||+++|+.+.+.++|.++++.+.+.+.. .++ ...+.+.+.+.++.
T Consensus 325 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 325 VL-VLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HH-HHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHH
Confidence 22 22222222222 234456788899999999999999999999999888777665544 343 33444444444333
Q ss_pred H
Q 010721 472 A 472 (503)
Q Consensus 472 ~ 472 (503)
.
T Consensus 403 ~ 403 (1146)
T PRK08633 403 T 403 (1146)
T ss_pred H
Confidence 3
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=212.00 Aligned_cols=354 Identities=13% Similarity=-0.003 Sum_probs=227.3
Q ss_pred HHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcch----HHHHHHhHHHHHHHHHH
Q 010721 96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR----RTFQIDTIPLILGAIIS 171 (503)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~ 171 (503)
++...+..+.+.|.+|.+.+|+|. +..++|++.+++.++..++++++|+++||+||| +.+.++..+. .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~--s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGY--TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCC--CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence 455556678888999999999999 999999999999999999999999999999994 3333222222 22333
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhH
Q 010721 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251 (503)
Q Consensus 172 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~ 251 (503)
..+++++.+++.|++.|++.+...+...+++.++ +++|+++++......++|.++||++++++.+..+ ||..|++.+
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~ 165 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT 165 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence 4468899999999999999999999888888876 3558899999999999999999999999998888 999999877
Q ss_pred HHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccch-hhhccCccccchhh
Q 010721 252 LPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS-ELLEEPHSRVAFIG 330 (503)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 330 (503)
+..++..+..++.||.++...++++.++..+..++..+++................ .....+. ....+..... .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~g~s~---~ 240 (382)
T PRK11128 166 AGVASMLLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSH--AAYYGFSAIYWQAAGYSA---S 240 (382)
T ss_pred HHHHHHHHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHh--HhHHHHHHHHHHHCCCCH---h
Confidence 65555544444455532211000100001122233333332221111100000000 0000111 1111111111 1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcc
Q 010721 331 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG 410 (503)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (503)
..+.......+..++..++.+++.||+++|+.+..+.++..++.+++.... +.+..+....+...+++. ..
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~g~~~~~-~~ 311 (382)
T PRK11128 241 TIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--------ALPWLIVIQILHCGTFTV-CH 311 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHH-HH
Confidence 234555567778888889999999999999998888877777665554311 222222223333222222 23
Q ss_pred ccccccccccCCcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHH
Q 010721 411 PVTGLVIPELSSNRTRGKIMGFSFSV-HWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 472 (503)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 472 (503)
+....+..+. +++++++..++.+.. ..+|..++|.+.|.+.|..|. ..++..+++.+++.
T Consensus 312 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 312 LAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 4445556665 555678889988744 457778999999999999886 45655555554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=219.67 Aligned_cols=385 Identities=14% Similarity=0.073 Sum_probs=237.0
Q ss_pred HHHHHHHHHhhhhhhcccchh-hHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHhHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGP-IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLIL 166 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~ 166 (503)
++.+++..+...+......+. ...+.+++|+ +..+.+++.+.+.....+..+++|+++|| +|||++++++.+++++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~--~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~ 93 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGF--SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI 93 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence 555555656665655544444 4566788998 88889999999998888999999999999 9999999999999999
Q ss_pred HHHHHHhhhhHHH-HHHHHHHHHhhhhhhchhhhhhhhhcCCCC--CccchhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 167 GAIISAQAHSLDE-MLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 167 ~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
++++++++.+... ++++|+++|+|.|...+...+++.|.+|++ +|+.++++++.+.++|..+||.+++++.+..+ |
T Consensus 94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w 172 (489)
T PRK10207 94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-Y 172 (489)
T ss_pred HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-h
Confidence 9999999876554 557999999999999999999999999877 45789999999999999999999999999888 9
Q ss_pred HHHHHhhHHHHHHHHHHhccccCChHHHH--hcCChHHHHHHH-------------HHH---------------------
Q 010721 244 RTMLYIASLPGFILALGMQFTVESPRWLC--KGGMLNDAKAVI-------------ANL--------------------- 287 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------------~~~--------------------- 287 (503)
|+.|++.++..++.++..++.++..+... .+++..+..... ...
T Consensus 173 ~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 252 (489)
T PRK10207 173 SVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTII 252 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999865543333333333332111000 000000100000 000
Q ss_pred -----cCCcchHH--HHHHHH-------HHHHhcCCCCcccchhhhccCccccch---hhhHHHHHHHHHHHHHHHHHhH
Q 010721 288 -----WGESEINK--AIEEFQ-------LVIKKDGSDLDSQWSELLEEPHSRVAF---IGDGALASLLVGVTNFAGALCA 350 (503)
Q Consensus 288 -----~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 350 (503)
.+.+...+ ...... ......... ....++......... ......+..+..+..++..++.
T Consensus 253 f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~---~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~ 329 (489)
T PRK10207 253 FFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMP---TSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPIL 329 (489)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHH
Confidence 00000000 000000 000000000 000000000000000 0012344445556677788888
Q ss_pred HHhhcccCCchH-------HHhhHHHHHHHHHHHHHHhc-CCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCC
Q 010721 351 SYLMDKEGRQKL-------LIGSYLGMAISMLLVVGATS-LPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS 422 (503)
Q Consensus 351 g~l~d~~g~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (503)
+++.||+++|+. +.++.++.+++++.+..... ........+.++++...++.........+....++.+..|
T Consensus 330 ~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP 409 (489)
T PRK10207 330 AGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVP 409 (489)
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCh
Confidence 999999998863 66676776666554422111 1101111222333333333333333345666788889999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHH----------HcCCcchhHhHHHHHHHHHHHHHhhc
Q 010721 423 NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE----------TFGVAPVYAGFGGVSLLSALFAYYFI 479 (503)
Q Consensus 423 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~ 479 (503)
++.++.++|+.+...++|+.++..+...... ...+.+.|...++.+++.+++.+...
T Consensus 410 ~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 410 QHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887765421 11134556666666665555554433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-27 Score=226.91 Aligned_cols=379 Identities=16% Similarity=0.136 Sum_probs=259.5
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 165 (503)
|.+++...+......-....++...+.++++++. +..+++|+.++....+.+.+++.+.+.||+|.|.+.+.|.++..
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~--s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGS--SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCC--CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 4334444444443333445556778999999998 88889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHH-HHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 166 LGAIISAQAHSLDEMLWG-RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
++.++.++++++|++++. -++.|+|.|..+.....++..||++| |+.+.|+...+.++|.++-|.+..++.+..| ||
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~r 200 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPLLKYLLSKYG-WR 200 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHHHHHHHHHhC-cH
Confidence 999999999999998885 69999999999999999999888766 9999999999999999999999999999988 99
Q ss_pred HHHHhhHHHHHHHHHHhccccC-ChHHHHh---cCCh-----HHHHHHHH-HHc-CCcchHH----HHHHHHHHHHhcC-
Q 010721 245 TMLYIASLPGFILALGMQFTVE-SPRWLCK---GGML-----NDAKAVIA-NLW-GESEINK----AIEEFQLVIKKDG- 308 (503)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~-----~~~~~~~~-~~~-~~~~~~~----~~~~~~~~~~~~~- 308 (503)
+.+++.+.+.+-.++....+.+ .+..... +.+. +......+ ... +...... .............
T Consensus 201 ~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (509)
T KOG2504|consen 201 GALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRN 280 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccc
Confidence 9999988877666655554333 2211000 0000 00000000 000 0000000 0000000000000
Q ss_pred -CCCcc---cchhhhccCccccchhhh---------------------------HHHHHHHHHHHHHHHHHhHHHhhccc
Q 010721 309 -SDLDS---QWSELLEEPHSRVAFIGD---------------------------GALASLLVGVTNFAGALCASYLMDKE 357 (503)
Q Consensus 309 -~~~~~---~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~g~l~d~~ 357 (503)
..... ...++++++.+....+.. +....++.++..++++++.|++.|+.
T Consensus 281 ~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~ 360 (509)
T KOG2504|consen 281 SPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP 360 (509)
T ss_pred cchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc
Confidence 00001 113445554443333222 77888999999999999999999998
Q ss_pred CCch--HHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHH
Q 010721 358 GRQK--LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFS 435 (503)
Q Consensus 358 g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 435 (503)
..++ ...++.++.+++.+.+.+. .....+...+++.+.....+..+...++.|+.+.++-..+.|+...
T Consensus 361 ~~~~~~~~~~~ll~~gl~~~~~p~~---------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~ 431 (509)
T KOG2504|consen 361 GIRALVLFLLTLLIAGLARLFLPFA---------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLL 431 (509)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHH
Confidence 8444 3444444444444333331 2223333333333333333344555678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CcchhHhHHHHHHHHHHHHHh
Q 010721 436 VHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 436 ~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 477 (503)
+..++..+||++.|.+.|..| |...|...+.+.++++++.++
T Consensus 432 ~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 432 FQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred HhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 999999999999999999998 888888888887777765443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=213.98 Aligned_cols=372 Identities=18% Similarity=0.128 Sum_probs=263.4
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+..++++.++..++..+....++.+..+..- |+...+++.++..+...+.++++|.++||++||++++.+.++.++..
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~--S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTG--SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 4556677778888888888888888877654 99999999999999999999999999999999999999988877665
Q ss_pred HHHHhh-----hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 169 IISAQA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 169 ~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
+..++. .+.+.+++.-++.|++.+...|+-.+++.|..|+++...++++.++..++..++||.++|.+....| -
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~ 168 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-A 168 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-H
Confidence 554432 4788999999999999999999999999999999999999999999999999999999999888777 7
Q ss_pred HHHHHhhHHHHHHHHHHhccccCChHH--HHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhcc
Q 010721 244 RTMLYIASLPGFILALGMQFTVESPRW--LCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE 321 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (503)
.+.|++.++..++.++.....+++++. ..+++-.++-++..+.....+........... ....... ......++..
T Consensus 169 ~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~-~~l~~~a-~~aLlPl~a~ 246 (524)
T PF05977_consen 169 AAAFLINALSFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFL-FNLFASA-VWALLPLFAR 246 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHH-HHHhhhH-HHHhhhHHHH
Confidence 888888777666655444444332110 00011111222233334433333222111111 1000000 0111122211
Q ss_pred CccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHH
Q 010721 322 PHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFY 401 (503)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (503)
....... ..-+++.+..+++.++|.++.+++.+|+++++++..+.++.+++.+.+.+. ...+.....++
T Consensus 247 ~~l~~~a-~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~----------~~~~~~~~~l~ 315 (524)
T PF05977_consen 247 DVLGGGA-SGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS----------PSFWLALIALF 315 (524)
T ss_pred HHhCCcH-HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc----------hHHHHHHHHHH
Confidence 1111111 124577888999999999999999999999888888888777777666552 12222222333
Q ss_pred HHHHh-cCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHH
Q 010721 402 IFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 476 (503)
Q Consensus 402 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 476 (503)
..+++ ........+..++..|++.||++++++.++...+..+|..+.|.+.+..|.+..+.+.++..+++.++.+
T Consensus 316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 33333 2233455678889999999999999999999999999999999999999988888776665555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=242.14 Aligned_cols=344 Identities=14% Similarity=0.020 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH---HhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhh
Q 010721 124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI---DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200 (503)
Q Consensus 124 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 200 (503)
...++..+++.++++++++++|+++||+|||+++.. +.++..+..+.....++++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 567889999999999999999999999999997533 22333333333334589999999999999999999999999
Q ss_pred hhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccccCChHHHHh-cC--C-
Q 010721 201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCK-GG--M- 276 (503)
Q Consensus 201 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~- 276 (503)
++.+++++++|++++++.+++.++|.++||++++++....+ |++.|+..++..++.+++.+++++.+..... +. .
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTGNAAPDLKIDRNI 210 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeeccch
Confidence 99999999999999999999999999999999999988877 9999966666666666666667665321000 00 0
Q ss_pred hHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcc
Q 010721 277 LNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDK 356 (503)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 356 (503)
..+....++...+.+................. ....+...+....+... ....+.+.+..+++.+++.++.|++.|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~g~~-~~~~g~~~~~~~~g~~ig~~~~g~l~~~ 287 (1140)
T PRK06814 211 IRSTITLLKYAKADKRIWLAILGISWFWLVGA--VVLSQLPLLAKETLGGD-ENVATLFLAVFSVGVAVGSFLASKLSEG 287 (1140)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 01112223334333332222111111000000 00111111111111111 1125567788899999999999999998
Q ss_pred cCCchHHHhhHHHHHHHHHHHHHHhcC-CC-----------CcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcc
Q 010721 357 EGRQKLLIGSYLGMAISMLLVVGATSL-PL-----------DEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR 424 (503)
Q Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (503)
..+++.+..+.++..++.+.+.+.... .. ....+.+...+..+++ +.+.....+...+++++..|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~ 366 (1140)
T PRK06814 288 RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGL-AAAGGLYIVPLFAALQAWANPA 366 (1140)
T ss_pred ceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHH-HHHHHHhHHHHHHHHHhhCCcc
Confidence 877776665555555444433331000 00 0001112222222222 2222223345678889999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcchhHhHHHHHHHHH
Q 010721 425 TRGKIMGFSFSVHWVCNFLVGLFFLDLVET-FGVAPVYAGFGGVSLLSA 472 (503)
Q Consensus 425 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~ 472 (503)
.+|+++|+.+++.+++..+++.+.+.+.+. .++...+++.+++.++.+
T Consensus 367 ~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 367 HRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVA 415 (1140)
T ss_pred cceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998754 344444544444433333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=209.04 Aligned_cols=370 Identities=12% Similarity=0.080 Sum_probs=235.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
++.+....++.......+.|.+|.+ .+++|. +..+.|++.+++.+++.+++++.|+++||+|||+.++.+.+..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGL--SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL 81 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 4555666677777777778888765 456888 9999999999999999999999999999999999999877766554
Q ss_pred HHHH---Hhh-----hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 168 AIIS---AQA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 168 ~~~~---~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
.... .+. +.+..+++.|++.|++.+...+....+..|.. ++++..++......++|.++||.+++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 159 (396)
T TIGR00882 82 FAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI 159 (396)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc
Confidence 4332 111 23344566789999998888888887777753 3345677888888999999999999988654
Q ss_pred CchhHHHHHhhHHHHHHHHHHhcc-ccCChHHHHhcC-----ChHHHHHHHHHHcCCcchHHHHHHH-HHHHH--hcCCC
Q 010721 240 PHWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGG-----MLNDAKAVIANLWGESEINKAIEEF-QLVIK--KDGSD 310 (503)
Q Consensus 240 ~~~wr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~ 310 (503)
+ ||..|++.+++.++..+..++ .+|+|+....++ +.++..+...+..+++......... ..... .....
T Consensus 160 -~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 237 (396)
T TIGR00882 160 -D-PQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQ 237 (396)
T ss_pred -C-chHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5 999999988888777655544 444433211100 0001111222332332221111100 00000 00000
Q ss_pred CcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchh
Q 010721 311 LDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 390 (503)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (503)
......+.+....... ...+...++..+...++.+..+++.||+++|+.+.++.++.++...+..... +
T Consensus 238 ~~~y~~~~~~~~~~~~---~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~--------~ 306 (396)
T TIGR00882 238 FANFFTSFFATPQQGT---RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT--------T 306 (396)
T ss_pred HHHHHHHhccccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC--------C
Confidence 0001111111111111 1134556667778888889999999999999998888877777665544311 1
Q ss_pred hHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHH
Q 010721 391 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGF-SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSL 469 (503)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 469 (503)
.+.......+...+... .......+..+..+++.++++.+. .+....+|+++++.+.|++.|..|++..|.+.+++.+
T Consensus 307 ~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~ 385 (396)
T TIGR00882 307 ALEVVILKMLHAFEVPF-LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVL 385 (396)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHH
Confidence 12222222222221111 112233455667788888887776 6778889999999999999999999999998888877
Q ss_pred HHHHHHH
Q 010721 470 LSALFAY 476 (503)
Q Consensus 470 ~~~~~~~ 476 (503)
+..+...
T Consensus 386 i~~~~~~ 392 (396)
T TIGR00882 386 LFTLISV 392 (396)
T ss_pred HHHHHHH
Confidence 7766543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-24 Score=206.17 Aligned_cols=348 Identities=17% Similarity=0.139 Sum_probs=220.8
Q ss_pred HHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHH
Q 010721 93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA 172 (503)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 172 (503)
++......+.....+..++.+..|+|- +....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|++.++
T Consensus 50 ~~~~~~~~~~~~~~a~~l~~I~~diG~---~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a 126 (599)
T PF06609_consen 50 SLAVIAAYFVLVLPASILPYINADIGG---SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA 126 (599)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCC---CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh
Confidence 333333445555667778999999985 34568999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHH
Q 010721 173 QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASL 252 (503)
Q Consensus 173 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~ 252 (503)
.++|...++.+..+.|+|.|.... ....++|..|.|.|....++......+...+++.++..+....+ |||.|++.++
T Consensus 127 tA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i 204 (599)
T PF06609_consen 127 TAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFII 204 (599)
T ss_pred cCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHHH
Confidence 999999999999999999887765 45568999999999888877776666666677888776666556 9999999888
Q ss_pred HHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHc---------------------CCc-------chH-HHHHHH---
Q 010721 253 PGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW---------------------GES-------EIN-KAIEEF--- 300 (503)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-------~~~-~~~~~~--- 300 (503)
...+.++..+++..+|++...++++...++.++++. +.. ..- ......
T Consensus 205 ~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~L 284 (599)
T PF06609_consen 205 WSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLL 284 (599)
T ss_pred HHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHH
Confidence 777665444333233333222222111111122111 100 000 000000
Q ss_pred -HHHHHh-c-CCCCcccchhhhccC-ccccchhhh-------------------------------HHHHHHHHHHHHHH
Q 010721 301 -QLVIKK-D-GSDLDSQWSELLEEP-HSRVAFIGD-------------------------------GALASLLVGVTNFA 345 (503)
Q Consensus 301 -~~~~~~-~-~~~~~~~~~~~~~~~-~~~~~~~~~-------------------------------~~~~~~~~~~~~~~ 345 (503)
...... . ..........+++++ .+....+.. .+......+++..+
T Consensus 285 v~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~ 364 (599)
T PF06609_consen 285 VAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCA 364 (599)
T ss_pred HHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHH
Confidence 000001 0 111223344555553 222221111 22345566777788
Q ss_pred HHHhHHHhhcccCCchHH-HhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcc
Q 010721 346 GALCASYLMDKEGRQKLL-IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR 424 (503)
Q Consensus 346 ~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (503)
+.++.|.+..++++-|.. +++.+++.+++.++... ... +....+....+...+.+.. .....+.++-..|++
T Consensus 365 g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~-~~~-----n~~~~i~~~~l~g~giG~~-~~~~~~~~ql~~p~~ 437 (599)
T PF06609_consen 365 GAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV-RPD-----NKNAAIAFLVLAGFGIGGI-LVPAIVIAQLIVPDE 437 (599)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc-cCC-----CcchHHHHHHHHHHhHHHH-HHHHHHeeEeeeCch
Confidence 888889999888765544 45555555444444332 111 1112222222222222222 223345566678999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 425 TRGKIMGFSFSVHWVCNFLVGLFFLDLV 452 (503)
Q Consensus 425 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 452 (503)
+.|++.|+..+++.+|+.++..++..++
T Consensus 438 ~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 438 DIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999998886655
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=208.10 Aligned_cols=333 Identities=17% Similarity=0.130 Sum_probs=217.3
Q ss_pred hhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh----hcchH-HHHHHhHHHHHHHHHHHhhhh------H
Q 010721 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRR-TFQIDTIPLILGAIISAQAHS------L 177 (503)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~ 177 (503)
..+.+.+++|+ ++.++|++.++..+..++..++.|+++|| +|||| .++++.++.+++.+++.+.++ .
T Consensus 22 l~~~~~~~~g~--s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 22 LLFFYTDVLGL--SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHccCC--CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 44677788999 99999999999999999999999999997 68754 567788888888888877654 4
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhcC-CCCCccchhhHHHHHHHHHHHHHHHhhccCC-------CCCchhHHHHHh
Q 010721 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-------DDPHWWRTMLYI 249 (503)
Q Consensus 178 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~-------~~~~~wr~~~~~ 249 (503)
..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+.+.+. +..+ ||+.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i 178 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHH
Confidence 56777889999998888888888888987 4678999999988888888777655543332 2334 9999999
Q ss_pred hHHHHHHHHHHh-ccccCChHHHHhc-CChHHHHHHHHHHcCCcchHHHHHH-HHHHHHhcCCCCcccchhhhccCcccc
Q 010721 250 ASLPGFILALGM-QFTVESPRWLCKG-GMLNDAKAVIANLWGESEINKAIEE-FQLVIKKDGSDLDSQWSELLEEPHSRV 326 (503)
Q Consensus 250 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
.+++.++..+.. ++.+|+++....+ +++.+..+..+...+++........ .......... ..+...+.......
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 255 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIK---NGVQVYYFTYVLGD 255 (437)
T ss_pred HHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH---cchhheeEeeecCC
Confidence 888877765544 5567654211111 1111122333444333332221111 1110100000 00011111111110
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHh
Q 010721 327 AFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA 406 (503)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (503)
....+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+.. .+..... ......+++
T Consensus 256 --~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~g~~ 324 (437)
T TIGR00792 256 --PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG--------SNLPLIL-VLIILAGFG 324 (437)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc--------hhHHHHH-HHHHHHHHH
Confidence 11123445566888899999999999999999999888877777666554421 1111222 222222222
Q ss_pred cC-ccccccccccccCC-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 010721 407 IG-AGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVA 458 (503)
Q Consensus 407 ~~-~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 458 (503)
.+ ..+..+++++|..+ ++.+|.+.|+.+.+..+|..+++.+.|.+.+..|+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 325 QNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 22 23556667777654 456899999999999999999999999999988864
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=212.81 Aligned_cols=381 Identities=13% Similarity=0.071 Sum_probs=231.5
Q ss_pred HHHHHHHHHhhhhhhcccchhh-HhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHhHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLIL 166 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~ 166 (503)
++.+++..++..+........+ ..+.+++|+ +..+.+++.+.+........+++|+++|| +|||++++++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~--s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGM--SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4445555555555554444444 455688998 88888888888777766777899999999 5999999999999999
Q ss_pred HHHHHHhhh-hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCC--ccchhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 167 GAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 167 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
+.+++++++ +.+.++++|+++|++.|...+...+++.|++|+++ |+.++++++.+.++|.++||++++++.+..+ |
T Consensus 101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~ 179 (500)
T PRK09584 101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-W 179 (500)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-H
Confidence 999998874 56677788999999999999999999999998654 4568899999999999999999999988877 9
Q ss_pred HHHHHhhHHHHHHHHHHhc----cccCChHHHHhcCChHHHHHHH-----------------------------------
Q 010721 244 RTMLYIASLPGFILALGMQ----FTVESPRWLCKGGMLNDAKAVI----------------------------------- 284 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 284 (503)
|+.|++.++..++..+..+ .++|.++.. ++++.+......
T Consensus 180 ~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (500)
T PRK09584 180 SVAFALSVVGMLITVVNFAFCQRWVKQYGSKP-DFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVV 258 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999997765444332222 233321000 000000000000
Q ss_pred ---HHHcCCcchH--HHHHHHHH----H---HHhcCCCCcccchhhh----ccCccccchhhhHHHHHHHHHHHHHHHHH
Q 010721 285 ---ANLWGESEIN--KAIEEFQL----V---IKKDGSDLDSQWSELL----EEPHSRVAFIGDGALASLLVGVTNFAGAL 348 (503)
Q Consensus 285 ---~~~~~~~~~~--~~~~~~~~----~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (503)
+........+ +....... . ....+. ......+ .++.... .........++..+..++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~---~~~l~~~~~~~~~~~~~g-~~i~~~~~~s~n~i~iil~~p 334 (500)
T PRK09584 259 IFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQM---PTSLNFFAIRNVEHSILG-IAVEPEQYQALNPFWIMIGSP 334 (500)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHhccccccc-eEECHHHHHHHhHHHHHHHHH
Confidence 0000000000 00000000 0 000000 0000000 0001000 001133445556655566656
Q ss_pred hH----HHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcc
Q 010721 349 CA----SYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR 424 (503)
Q Consensus 349 ~~----g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (503)
+. +++.+|.+..+.+.++.++.+++++.+.............+.++.+...++.........|....++.+..|++
T Consensus 335 ~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~ 414 (500)
T PRK09584 335 ILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQR 414 (500)
T ss_pred HHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHH
Confidence 55 45555555556778888888888888766543221111122334444444444444555788888899999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH----------HcCCcchhHhHHHHHHHHHHHHHh
Q 010721 425 TRGKIMGFSFSVHWVCNFLVGLFFLDLVE----------TFGVAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 425 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 477 (503)
.||+++|+......+|..++..+.+.... ..++...|...++++++.+++.+.
T Consensus 415 ~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 415 LMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887777777777666653221 112456676666666555544443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=192.80 Aligned_cols=322 Identities=15% Similarity=0.080 Sum_probs=192.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 201 (503)
+....|.+.|.|++.+.+.++.+|.++||+|||+++++|++..++..++.++++|+..+++.|++.|+..| ......++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999777777999999998 66778889
Q ss_pred hhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC---CCchhHHH--HHhhHHHHHH-HHHHhccccCChHHHHhcC
Q 010721 202 ISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED---DPHWWRTM--LYIASLPGFI-LALGMQFTVESPRWLCKGG 275 (503)
Q Consensus 202 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~---~~~~wr~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 275 (503)
++|.+++|+|+++++.+..++++|.++||.+|+++.+ ..+.+... -++..+++.. .....+++||+-+...++.
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~ 224 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRND 224 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcc
Confidence 9999999999999999999999999999999999987 22221111 2222233333 3455577888733222221
Q ss_pred Ch---HHHHHHHHHHc------------CCcchH--HHHHHHH--HHHHhcCCCCcccchhhhccCccccchhhhHHHHH
Q 010721 276 ML---NDAKAVIANLW------------GESEIN--KAIEEFQ--LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALAS 336 (503)
Q Consensus 276 ~~---~~~~~~~~~~~------------~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (503)
+. .++.+..+... +.+... .....+. .................+....+..... ..+.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~-~~G~vl 303 (451)
T KOG2615|consen 225 EHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSM-QQGKVL 303 (451)
T ss_pred cccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChh-hheeee
Confidence 11 11111001110 000000 0000000 0000000000000000010111111111 122334
Q ss_pred HHHHHHHHHHHHhHHHhhcccC--CchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcccccc
Q 010721 337 LLVGVTNFAGALCASYLMDKEG--RQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTG 414 (503)
Q Consensus 337 ~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (503)
+..++.+.+.........+|.. .+..+.....++.-..+++... .....+.....+-...+....+...
T Consensus 304 ~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~---------~~~~~l~~~s~l~sf~~A~~vt~Lt 374 (451)
T KOG2615|consen 304 STTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA---------RTPVVLYLGSTLKSFSTASVVTCLT 374 (451)
T ss_pred ehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc---------ccchhhhHHHHHHHHHHHHhhHHHH
Confidence 4445555555555555555554 3333333333333222222221 1112222222222222222345566
Q ss_pred ccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 415 LVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 454 (503)
Q Consensus 415 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 454 (503)
.++....|+++||+++|+..+...++.++||.+.|.+..+
T Consensus 375 ~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 375 SLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 7788899999999999999999999999999999888764
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=199.96 Aligned_cols=175 Identities=12% Similarity=0.094 Sum_probs=148.3
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchH-HHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPIL-EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
.+++|+-.|+..+ +...+.+.|.+.+|+|+ +..+ .|.+.++++.+|+++++++|+++||+|.|+++.++.+.+++.
T Consensus 29 ~~~lC~fGF~~e~-R~n~s~a~p~L~~elgl--T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~ 105 (511)
T TIGR00806 29 VLYLCFYGFMAQF-RPGESFITPYLLTVLNF--TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV 105 (511)
T ss_pred HHHHHHHHHHHHh-hchHHHHHHHHHHHcCC--CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3334444444333 45667788999999999 8888 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Q 010721 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (503)
Q Consensus 168 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~ 247 (503)
+++.++++++..+.+.|++.|++.|... +...++..|+|+++|+++.++..++..+|.+++++++++ ....+ ||+.+
T Consensus 106 t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g-Wr~y~ 182 (511)
T TIGR00806 106 WLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG-WISYS 182 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-chhHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999998 44556 88765
Q ss_pred Hh---hHHHHHHHHHHhccccCChH
Q 010721 248 YI---ASLPGFILALGMQFTVESPR 269 (503)
Q Consensus 248 ~~---~~~~~~~~~~~~~~~~~~~~ 269 (503)
.. ......+.++..+++|..++
T Consensus 183 ~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 183 TLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCch
Confidence 54 33333444566677775554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=198.47 Aligned_cols=382 Identities=14% Similarity=0.108 Sum_probs=237.4
Q ss_pred CchHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhH
Q 010721 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (503)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 162 (503)
.++|..+....+...+.+.. ..++...+.+++++|+ +..+.+++.++. ..+.+++++.|+++||+|+|++++++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgl--s~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l 99 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNL--TQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT 99 (591)
T ss_pred cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCc--CHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34555444444443333332 2345667889999999 899999988874 4456788899999999999999999999
Q ss_pred HHHHHHHHHHhh------hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHH-HHHhhcc
Q 010721 163 PLILGAIISAQA------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT-SLFLGIP 235 (503)
Q Consensus 163 ~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i-g~~~~~~ 235 (503)
+++++.++++++ ++++.+++.|++.|+|.+...+.+...+.+|+| ++||++.|+...+.++|.++ +++..++
T Consensus 100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 689999999999999999999999999999997 56999999999999999975 5555554
Q ss_pred CCCCCchhHHHHHhhHHHHHHHHHHhcc-ccCC--hHHHHhcCChHHHHHHHHHHcC------Ccc--------------
Q 010721 236 AEDDPHWWRTMLYIASLPGFILALGMQF-TVES--PRWLCKGGMLNDAKAVIANLWG------ESE-------------- 292 (503)
Q Consensus 236 l~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~-------------- 292 (503)
+. .+ |++.|++.+++.++..++.+. +++. +++..++++.+++++..++..+ ++.
T Consensus 179 ~~--~~-~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l 255 (591)
T PTZ00207 179 FS--DN-TSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIIL 255 (591)
T ss_pred HH--Hh-HHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHH
Confidence 43 23 888888877777776544433 4333 3322223222222222111110 000
Q ss_pred -------------------hHHHHHH--H--HHHHH--------------h-c---------------------------
Q 010721 293 -------------------INKAIEE--F--QLVIK--------------K-D--------------------------- 307 (503)
Q Consensus 293 -------------------~~~~~~~--~--~~~~~--------------~-~--------------------------- 307 (503)
....... . ..... . .
T Consensus 256 ~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (591)
T PTZ00207 256 IVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDV 335 (591)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccc
Confidence 0000000 0 00000 0 0
Q ss_pred C---CCCcccchhhhccCccccchhhh---------------------------H--HH-HHHHHHHHHHHHHHhHHHhh
Q 010721 308 G---SDLDSQWSELLEEPHSRVAFIGD---------------------------G--AL-ASLLVGVTNFAGALCASYLM 354 (503)
Q Consensus 308 ~---~~~~~~~~~~~~~~~~~~~~~~~---------------------------~--~~-~~~~~~~~~~~~~~~~g~l~ 354 (503)
. .....++.+.+++..+|.....+ . .. +.++.++++.+|++..|++.
T Consensus 336 ~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~ 415 (591)
T PTZ00207 336 DYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE 415 (591)
T ss_pred cCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH
Confidence 0 00001223333333333333322 0 11 56888999999999999987
Q ss_pred cccCCc--------hHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCc-cccccccccccCCccc
Q 010721 355 DKEGRQ--------KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRT 425 (503)
Q Consensus 355 d~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 425 (503)
....+| ...+....++.++.+++.+.. +.....+...+ .+++.|. .++....++|++. ++
T Consensus 416 ~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~--------p~~~L~~~~~l--vg~~~G~~~~~~~~i~selFg-k~ 484 (591)
T PTZ00207 416 IWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL--------PKAALPLPYFI--AAFANGFMAATIALVTRTIFA-KD 484 (591)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC--------CccHhHHHHHH--HHHHhhHhHHHHHHHHHHHhc-cc
Confidence 222111 222222222444444444321 11122222222 2233333 4566788999999 77
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHHHHHHHHc----------C---CcchhHhHHHHHHHHHHHHHhhccCCC
Q 010721 426 RGKIMGFSFSVHWVCNFLV-GLFFLDLVETF----------G---VAPVYAGFGGVSLLSALFAYYFIVETK 483 (503)
Q Consensus 426 ~~~~~g~~~~~~~~g~~~~-~~~~g~l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (503)
-|+-.-+.....-+|..+. ..++|.++|.- | +..+|++.+++++++.++...+..++|
T Consensus 485 ~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 485 PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 8888888888888888776 66788888752 2 567899999999988887766555544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=216.72 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=153.3
Q ss_pred HHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 169 (503)
+.+++..+......+..+..++.++++|++ ++.+.|++.+.+.++++++.++.|+++||+|||+++.++.++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~l--ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKL--STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCC--CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 444456667777788889999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHhhh---------------------------------------------------hHHHHHHHHHHHHhhhhhhchhh
Q 010721 170 ISAQAH---------------------------------------------------SLDEMLWGRFLVGLGIGVNTVLV 198 (503)
Q Consensus 170 ~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~ 198 (503)
++++.+ .+..++++|+++|+|.+..++..
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~ 193 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG 193 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence 998763 25567889999999999999999
Q ss_pred hhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC---------------------chhHHHHHhhHHHHHHH
Q 010721 199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------------------HWWRTMLYIASLPGFIL 257 (503)
Q Consensus 199 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~---------------------~~wr~~~~~~~~~~~~~ 257 (503)
.+++.|++|+++|++++++++.+..+|.++|+++++++.+.. +.||..|++.+++.++.
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876432 12777888888888777
Q ss_pred HHHhccccCC
Q 010721 258 ALGMQFTVES 267 (503)
Q Consensus 258 ~~~~~~~~~~ 267 (503)
.+.++++|++
T Consensus 274 ~v~l~~~p~~ 283 (633)
T TIGR00805 274 SIPFFFFPKA 283 (633)
T ss_pred HHHHHhCccc
Confidence 6666666654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=196.74 Aligned_cols=329 Identities=15% Similarity=0.075 Sum_probs=207.7
Q ss_pred hcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-----cchHHH-HHHhHHHHHHHHHHHhh--
Q 010721 103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRTF-QIDTIPLILGAIISAQA-- 174 (503)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~-- 174 (503)
....++.+|.+.+|+|+ |..++|+..+. .+...+ .+++|+++||+ ||||.+ +.+.++.++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~g~--s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~ 79 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNV--SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP 79 (356)
T ss_pred chhHHhHHHHHHHHcCC--CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34567788999999999 88999999655 555555 99999999998 899874 66788888887777777
Q ss_pred -hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCch-------hHHH
Q 010721 175 -HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-------WRTM 246 (503)
Q Consensus 175 -~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~-------wr~~ 246 (503)
.+++.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+. ||..
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 56667777888999999999999999999999999999999999999999999999999877765442 9999
Q ss_pred HHhhHHHHHHHHHHhcc-ccCChHHHHhcCC-hHHHHHHHHHHcCCcchHHHHHHH-HHHHHhcCCCCcccchhh-hccC
Q 010721 247 LYIASLPGFILALGMQF-TVESPRWLCKGGM-LNDAKAVIANLWGESEINKAIEEF-QLVIKKDGSDLDSQWSEL-LEEP 322 (503)
Q Consensus 247 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 322 (503)
|++.++..++..+..++ .+|+++....+++ ..+..+..+...+++......... ..............+... +.+.
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM 239 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988887776655554 4554321100100 011111222222222100010000 000000000000111111 1111
Q ss_pred ccccchhhhHHHHHHHHH-HHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCc-chhhHHHHHHHHH
Q 010721 323 HSRVAFIGDGALASLLVG-VTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDE-DFSHNLSILGTLF 400 (503)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 400 (503)
.+.. ...+......+ +..+++.++++++.||+|+|+.+..+.++.++...++.+........ ...+....+....
T Consensus 240 g~~~---~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (356)
T TIGR00901 240 GFSK---EEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTI 316 (356)
T ss_pred CCCH---HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHH
Confidence 1111 11223333333 56788999999999999999988888877776665554432110000 0001112222222
Q ss_pred HHHHHh-cCccccccccccccCCcccchhhHHHHHHHHH
Q 010721 401 YIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHW 438 (503)
Q Consensus 401 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 438 (503)
+..++. ....+...++..|.+|+++||+.+|+.++..+
T Consensus 317 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 317 TLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 222332 22346678899999999999999999988654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=189.14 Aligned_cols=372 Identities=11% Similarity=-0.014 Sum_probs=231.8
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHH--HHHHHHHHHHHHHhh-hhhhhhhcchHHHHHHhHHH-
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLV--VSIFIAGAFVGSISS-GSLADKLGCRRTFQIDTIPL- 164 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~--~s~~~~~~~i~~~~~-g~l~dr~Grr~~l~~~~~~~- 164 (503)
+..+...++..++..+...+.+|.+.+|.|. +..++|++ .+++.+...+.++++ ++..||+||||.+++.+.+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~--~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGA--PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 4566777889999999999999999999998 99999997 467788888888888 44799999999976665332
Q ss_pred HHHHHHHH-h--hhh-HHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 165 ILGAIISA-Q--AHS-LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 165 ~~~~~~~~-~--~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
++.....+ + ..+ ...++..-++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~ 160 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF 160 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222 1 222 3344555666777778788888888899998888898888898889999999998888888877
Q ss_pred chhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhc
Q 010721 241 HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLE 320 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (503)
+ ||..|++.+++.++..+..++++|+++. ++++.++..+..++..+++................... .......++
T Consensus 161 g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~ 236 (390)
T TIGR02718 161 G-QRPAFLLVACVPLASLVCVLWLKDRAVA--SPEAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSG-FGLSKLYLV 236 (390)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHcCCCCcC--ccccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH-HHHhhHHHH
Confidence 8 9999999988887766655555443211 11111111222333333333222111111110000000 001112222
Q ss_pred cCccccchhhhHHHHHHHHH-HHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHH
Q 010721 321 EPHSRVAFIGDGALASLLVG-VTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTL 399 (503)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (503)
+..+... ..+......+ ...+++.++.|++.||+|+|+.+..+..+..+..+.......... ......... .
T Consensus 237 ~~G~s~~---~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~ 309 (390)
T TIGR02718 237 DAGWPLE---WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL---APGIAVAWS-C 309 (390)
T ss_pred hcCCCHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc---CCcHHHHHH-H
Confidence 2222222 2334444444 456677899999999999999888776655333332222111000 011111111 1
Q ss_pred HHHHHHhcCc-cccccccccccCCc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHH
Q 010721 400 FYIFTFAIGA-GPVTGLVIPELSSN-RTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL 473 (503)
Q Consensus 400 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 473 (503)
.....+..+. .+...+...+..++ +.+++.+++.+...++|..++|.+.|.+.|..|+...|...+++.+++.+
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 1111111122 23334444455554 78999999999999999999999999999999998888877766665544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=172.52 Aligned_cols=364 Identities=17% Similarity=0.182 Sum_probs=255.5
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+..+.+..+-.--..+..+|.++++++|+|+ +.+.+|+++++..+...+.+++..+++.|+|.++.+..++++..++.
T Consensus 14 i~gIvlia~NLR~~itsvgPLL~~Ir~~~gl--s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~ 91 (395)
T COG2807 14 LAGIVLIAFNLRPAITSVGPLLDEIRQDLGL--SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI 91 (395)
T ss_pred HHHHHHHHhccchhhhhhhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444445567789999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHH
Q 010721 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (503)
Q Consensus 169 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~ 248 (503)
++-... +.+.++.+-.+.|.|.+...+..+.++-+.||++ -+..+++|.+..++|..+++.+...+.++.++||....
T Consensus 92 ~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 92 LIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred HHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 999887 8888999999999999999999999999999877 89999999999999999999999888887755999999
Q ss_pred hhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccc-hhhhccCccccc
Q 010721 249 IASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW-SELLEEPHSRVA 327 (503)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 327 (503)
+-+.++++.++.++.-...++.... ....+...++.+++........+.... ...+....| ..++.++.....
T Consensus 170 ~WAl~allAl~~WlPq~~r~~~~~~----~~~~~~~~~vw~~~~aW~vtLfmGlqS--~~~Y~~~~WLP~ili~~G~sa~ 243 (395)
T COG2807 170 FWALLALLALLIWLPQALREQAASI----ATKLVSVRKVWRSPLAWQVTLFMGLQS--LLYYIVIGWLPAILIDRGLSAA 243 (395)
T ss_pred HHHHHHHHHHHHHhhhccccccccc----ccccccccccccCchhHHHHHHHHhhH--HHHHHHHHHHHHHHHHcCCCHH
Confidence 9999999888777653211110000 001111112233332222211111100 000000112 223333333222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHhhcccC-CchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHh
Q 010721 328 FIGDGALASLLVGVTNFAGALCASYLMDKEG-RQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA 406 (503)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (503)
.++.+.+...+..++..+....+.+|.. +|+..+....++.++.+.+.+.+. ...+.. +.++..+ .
T Consensus 244 ---~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~-------~~~~lw--~~llG~G-~ 310 (395)
T COG2807 244 ---EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG-------QLPILW--ALLLGLG-Q 310 (395)
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-------hHHHHH--HHHHhCc-c
Confidence 2667888899999999999999999754 566666667777777777766432 222221 2222222 2
Q ss_pred cCcccccccccccc-CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchhHhHHHHHHHHHHHH
Q 010721 407 IGAGPVTGLVIPEL-SSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 407 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 475 (503)
.+.+|+..+.+.+. -.++..+.-.|+.+.++++-...||.+.|++.|..| |...+..++.+.++..+..
T Consensus 311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 23345544555443 345677888999999999999999999999999988 5555555555544444443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=180.37 Aligned_cols=393 Identities=13% Similarity=0.043 Sum_probs=248.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhh----hhcchHHHHH-HhHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTFQI-DTIP 163 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~ 163 (503)
++.++...+-..+..+...+.++.+.+++|. +....+++..+..+...+.+++.|.++| |+|||+++++ +.+.
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~--~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQELGI--PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 4455555566667777777888888899999 8999999999999999999999999999 5999999887 4666
Q ss_pred HHHHHHHHHhhhhHH-----------------HHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCc--cchhhHHHHHHHH
Q 010721 164 LILGAIISAQAHSLD-----------------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYR--GSLGTLCQVGTCL 224 (503)
Q Consensus 164 ~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~ 224 (503)
..++.++.+++++++ .++++-.+..++.....+...+++.|.+|+++| +.++++.+...++
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 777777777776653 223333445557888888889999999998865 5799999999999
Q ss_pred HHHHHHHhhccCC--CC--------C----chhHHHHHhhHHHHHHHHHHh-ccccCChHHHHh--------cCChHHH-
Q 010721 225 GIITSLFLGIPAE--DD--------P----HWWRTMLYIASLPGFILALGM-QFTVESPRWLCK--------GGMLNDA- 280 (503)
Q Consensus 225 G~~ig~~~~~~l~--~~--------~----~~wr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~- 280 (503)
|.++|+.++++.. +. . .+.|+.|++.+++.++..+.. +..+|.|....+ +.++.+.
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~ 243 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEE 243 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchh
Confidence 9999999987641 10 0 137899999888777765555 457776531100 0000000
Q ss_pred ---HHHHHHHcCCcchHHHHHHHHHH-----HHhcCCCCcccchhhhccCcccc----chhhhHHHHHHHHHHHHHHHHH
Q 010721 281 ---KAVIANLWGESEINKAIEEFQLV-----IKKDGSDLDSQWSELLEEPHSRV----AFIGDGALASLLVGVTNFAGAL 348 (503)
Q Consensus 281 ---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 348 (503)
++..+..+.-+..-......... ...........-.+++....-.. .-.-...+....+.+...+.++
T Consensus 244 ~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~ 323 (477)
T TIGR01301 244 AFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSI 323 (477)
T ss_pred hhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222111111100000 00000000000011121110000 0000133455566666678888
Q ss_pred hHHHhhcccCC-chHHHhhHHHHHHHHHHHHHHhcCCCC------------cchh-hHHHHHHHHHHHHHHhcCcccccc
Q 010721 349 CASYLMDKEGR-QKLLIGSYLGMAISMLLVVGATSLPLD------------EDFS-HNLSILGTLFYIFTFAIGAGPVTG 414 (503)
Q Consensus 349 ~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 414 (503)
+..++.+|+|+ |+...++.++.++++....+......+ .... .+..+......+..++ ....+.+
T Consensus 324 ~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A-~~~siPf 402 (477)
T TIGR01301 324 GMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA-ITYSIPF 402 (477)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH-HHHHHhH
Confidence 88999999985 677688877777777777654321100 0000 1222222222222222 2345678
Q ss_pred ccccccCCc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcchhHhHHHHHHHHHHHHHhhccCCCC
Q 010721 415 LVIPELSSN--RTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG--VAPVYAGFGGVSLLSALFAYYFIVETKG 484 (503)
Q Consensus 415 ~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (503)
+++++..++ +..|..+|+.|.+..+.+.+.....|.+.+..| ....+.+.++.+++++++.++.+|+.+.
T Consensus 403 al~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 403 ALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 888888884 456999999999999999999999998777776 4556667777888888888888887754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=186.63 Aligned_cols=357 Identities=12% Similarity=0.086 Sum_probs=218.4
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHhHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLIL 166 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~ 166 (503)
+..+++..+...+........+|.+ .+++|+ ++.+.+.+.+.+.....++.+++|+++||+ |||++++++.++..+
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgl--s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l 88 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKY--DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI 88 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 4444444455555444444555544 567888 899999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhh-hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCC--CccchhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 167 GAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 167 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
+.++.+..+ +...+.++..+.++|.|...+...++++|.+|++ +|..++++.+.+.++|..++|++.+++.+..+ |
T Consensus 89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w 167 (493)
T PRK15462 89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-W 167 (493)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-h
Confidence 988776543 2233444555566777777788889999999875 69999999999999999999999999988777 9
Q ss_pred HHHHHhhHHHHHHHHHHhccccCChHHH---HhcCChHHHHH---------------HHH-H-H----------------
Q 010721 244 RTMLYIASLPGFILALGMQFTVESPRWL---CKGGMLNDAKA---------------VIA-N-L---------------- 287 (503)
Q Consensus 244 r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------------~~~-~-~---------------- 287 (503)
++.|.+.++..++.++..++..+..... .++..+++... ... . .
T Consensus 168 ~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (493)
T PRK15462 168 AMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIG 247 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987654444443333211110000 00000000000 000 0 0
Q ss_pred -------cCCcchHHHHHHHHHH-----------HHhcCCCCcccchhhhccCccccchhh---hHHHHHHHHHHHHHHH
Q 010721 288 -------WGESEINKAIEEFQLV-----------IKKDGSDLDSQWSELLEEPHSRVAFIG---DGALASLLVGVTNFAG 346 (503)
Q Consensus 288 -------~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 346 (503)
...+....+....... ...++. ..-..++.+++......+ -.....++..+..++.
T Consensus 248 ~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~---~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l 324 (493)
T PRK15462 248 LGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQG---GSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLC 324 (493)
T ss_pred HHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHH
Confidence 0000000000000000 000000 011111222222111111 1556677888888888
Q ss_pred HHhHHHhhcccCC--ch-----HHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccc
Q 010721 347 ALCASYLMDKEGR--QK-----LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPE 419 (503)
Q Consensus 347 ~~~~g~l~d~~g~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (503)
.++..++-.|..+ |. -..++.++.+++++.+.+...........+.++++...++....-....|+..+.+++
T Consensus 325 ~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~ 404 (493)
T PRK15462 325 GVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITR 404 (493)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 8887777666532 21 2556777777777776554432221111334445555555555567778999999999
Q ss_pred cCCcccchhhHHHHHHHH-HHHHHHHHHHHHHH
Q 010721 420 LSSNRTRGKIMGFSFSVH-WVCNFLVGLFFLDL 451 (503)
Q Consensus 420 ~~~~~~~~~~~g~~~~~~-~~g~~~~~~~~g~l 451 (503)
+.|++.+|..+|+..... .+|..++..+.+..
T Consensus 405 laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 405 IEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999996643 46666665555544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-21 Score=185.90 Aligned_cols=369 Identities=13% Similarity=0.033 Sum_probs=233.8
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhc-----chHHHHHHhHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQIDTIP 163 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~ 163 (503)
+.++...++..++.........+.+.+++|+ +..+++...++..+...+-.+ +|+++||++ ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~--s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGL--DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 4555666788888743444555777778999 999999999999999998666 999999998 77777887766
Q ss_pred HH-HHHHHHHhhhhHHHHH-HHHHHHHhhhhhhchhhhhhhhhcCCCCCccchh---hHHHHHHHHHHHHHHHhhccCCC
Q 010721 164 LI-LGAIISAQAHSLDEML-WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLG---TLCQVGTCLGIITSLFLGIPAED 238 (503)
Q Consensus 164 ~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~G~~ig~~~~~~l~~ 238 (503)
.. +.....+..++..... ++.++.+++.+...++.-++..|..+ +++.... ++......+|.++|+.+++.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 4434444445544444 48899999999999999999999998 5444433 33444456899999999999988
Q ss_pred CCchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChH--------------HHHH---HHHHHcCCcchHHHHHHHH
Q 010721 239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLN--------------DAKA---VIANLWGESEINKAIEEFQ 301 (503)
Q Consensus 239 ~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~ 301 (503)
..+ ||..|++.+++.++..+..++++|++.....+.+++ ..++ ...+..+.+..........
T Consensus 184 ~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fif 262 (468)
T TIGR00788 184 KTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIF 262 (468)
T ss_pred hcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 877 999999988888777666677787531100110000 0011 1111111222111111111
Q ss_pred HHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHh
Q 010721 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 381 (503)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 381 (503)
......... ...+ ..+.. ..........+......+++.+++..+.+++.+|++.|+.+.++.++.+++.+......
T Consensus 263 l~~~~~~~~-~~~~-f~~~~-~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~ 339 (468)
T TIGR00788 263 LSYANLPGA-SGSV-FCATT-QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILV 339 (468)
T ss_pred HHHhhcCCC-Ccee-EEEEc-ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeee
Confidence 100111111 0110 01111 11111112255667777899999999999999999999999888888777665532211
Q ss_pred c-CCCCcc-hhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC---
Q 010721 382 S-LPLDED-FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG--- 456 (503)
Q Consensus 382 ~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--- 456 (503)
. ...... ...+.......+...+.+....+ ...++.+..|++.+|+.+++.+++.++|..+++.+.+.+.+..|
T Consensus 340 ~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~ 418 (468)
T TIGR00788 340 KRWNLAFGISDEVFVLGDSIIAEVLAQLKFMP-FLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITC 418 (468)
T ss_pred eccccccCCCCeeeeeehhHHHHHHHHHHHcc-HHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 0 000000 01112222223333333444444 46788899999999999999999999999999999999999988
Q ss_pred --CcchhHhHHH
Q 010721 457 --VAPVYAGFGG 466 (503)
Q Consensus 457 --~~~~~~~~~~ 466 (503)
++..+....+
T Consensus 419 ~~~~~~~~~i~i 430 (468)
T TIGR00788 419 DNSNNLWLLILG 430 (468)
T ss_pred ccccchHHHHHH
Confidence 6655554433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-19 Score=169.28 Aligned_cols=372 Identities=15% Similarity=0.099 Sum_probs=239.0
Q ss_pred HHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhc-chHHHHHHhHHHHHHHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-CRRTFQIDTIPLILGAII 170 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~ 170 (503)
++..+|+..+..+.+.|.++.+.++.|+ |..|+|++.++..+...++++++|.++||++ +|+.+.+..++.++....
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~--s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGF--SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455566677777788899999999999 9999999999999999999999999999986 577888888888887777
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHh-hccCCCCCc--hhHHHH
Q 010721 171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL-GIPAEDDPH--WWRTML 247 (503)
Q Consensus 171 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~-~~~l~~~~~--~wr~~~ 247 (503)
....++++.+++.-++..+......|...++..+... +++.-.|-.....++|.+++... +..+....+ ...+.+
T Consensus 85 ~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
T PF03825_consen 85 LAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIF 162 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 8888999999999988898888888888888888875 34555666666777777766433 112221111 133456
Q ss_pred HhhHHHHHHHHHHhccccCChHHHHhcCC-hHHHHHHHHHHcCCcchHHHHH-HHHHHHHhcCCCCcccchhh-hccCc-
Q 010721 248 YIASLPGFILALGMQFTVESPRWLCKGGM-LNDAKAVIANLWGESEINKAIE-EFQLVIKKDGSDLDSQWSEL-LEEPH- 323 (503)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~- 323 (503)
++.+...++.....+.+|+.|.....+.+ ++...+...++.++++...... ........... ..+... +++..
T Consensus 163 ~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~---~~f~~~yl~~~gg 239 (400)
T PF03825_consen 163 YIAAILSLLLAGFALFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAY---YTFFSIYLQELGG 239 (400)
T ss_pred HHHHHHHHHHHHHHHhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHccc
Confidence 66666665555555667876621111111 1111111122333332222111 11111111100 111121 22211
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHH----H
Q 010721 324 SRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGT----L 399 (503)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 399 (503)
.... ..+...++..+..++.-...+++.+|+|.++++.++.+..++=..++..... +.+...... .
T Consensus 240 ~~~~---~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-------~~~~~~~~~~l~q~ 309 (400)
T PF03825_consen 240 YSGS---TIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-------PWPFIVALQLLGQL 309 (400)
T ss_pred chhh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHh
Confidence 1111 1334556777888889999999999999999999999998888888776311 111111111 1
Q ss_pred HHHHHHhcCccccccccccccCCcccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHcCCcch------hHhHHHHHHHHH
Q 010721 400 FYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH-WVCNFLVGLFFLDLVETFGVAPV------YAGFGGVSLLSA 472 (503)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~~~~------~~~~~~~~~~~~ 472 (503)
+....++.. ......++.+..|++.|++++++++... .+|..+|..+.|+++|+.|.+.. +.+.+++.++..
T Consensus 310 lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~ 388 (400)
T PF03825_consen 310 LHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVIL 388 (400)
T ss_pred hhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 233333322 2345678899999999999999998865 59999999999999999886543 344444444444
Q ss_pred HHHHhhccC
Q 010721 473 LFAYYFIVE 481 (503)
Q Consensus 473 ~~~~~~~~~ 481 (503)
++.+++.|+
T Consensus 389 ~~f~~~fk~ 397 (400)
T PF03825_consen 389 VLFVILFKP 397 (400)
T ss_pred HHHHhhccC
Confidence 444444444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-19 Score=173.09 Aligned_cols=332 Identities=13% Similarity=0.028 Sum_probs=204.1
Q ss_pred hhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh----hcchH-HHHHHhHHHHHHHHHHHhhhh------
Q 010721 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRR-TFQIDTIPLILGAIISAQAHS------ 176 (503)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------ 176 (503)
.....+.+++|+ +..++|++.++..+..++..|+.|.++|| +|||| .++.+.+..++..++....++
T Consensus 31 ~l~~~~t~~~gl--s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~ 108 (444)
T PRK09669 31 FLAYFYTDVFGL--SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK 108 (444)
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 345677888999 99999999999999999999999999998 78854 555677777777766555443
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhhhhhhcC-CCCCccchhhHHHHHHHHHHHHHHHhhc----cCCC---CCchhHHHHH
Q 010721 177 LDEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGI----PAED---DPHWWRTMLY 248 (503)
Q Consensus 177 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~----~l~~---~~~~wr~~~~ 248 (503)
++.+++..++.+.+.........++..|+. ++++|++..++...+..+|..+++.+.. .+.. ..+ |+..+.
T Consensus 109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~ 187 (444)
T PRK09669 109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMM 187 (444)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHH
Confidence 455666666777777777777788999998 4577998888888888887777765432 2221 223 898888
Q ss_pred hhHHHHHHHHHHh-ccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHH-HHh--cCCCCcccchhhhccCcc
Q 010721 249 IASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV-IKK--DGSDLDSQWSELLEEPHS 324 (503)
Q Consensus 249 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 324 (503)
+.++++++..+.. +..+|.++.. ++++.+..+..+...+++............ ... ............+...
T Consensus 188 i~~ii~~v~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-- 263 (444)
T PRK09669 188 VMGLLGVVLFFCCFFMTKERYTPE--VDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRP-- 263 (444)
T ss_pred HHHHHHHHHHHHHhCCeEEecCCC--CcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCH--
Confidence 8887776665444 3355532211 111122233344444444322221111100 000 0000000111111110
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHH
Q 010721 325 RVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFT 404 (503)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (503)
. ..........+..+++.++.+++.||+|+|+.+..+.++..+..+.+.+... +....+....++.+.
T Consensus 264 ---~--~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~g~ 331 (444)
T PRK09669 264 ---D--LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP-------SNVWLIFALNILFNF 331 (444)
T ss_pred ---H--HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc-------chHHHHHHHHHHHHH
Confidence 0 1123344556777788899999999999999888776655544333322110 112222222222222
Q ss_pred HhcCccccccccccccCC-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 010721 405 FAIGAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVA 458 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 458 (503)
......+..+++++|..+ .+..|...|+.+.+..+|.++++.+.|.+.+..|+.
T Consensus 332 ~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 332 IQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 222334667788888764 334577889999999999999999999999988873
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-19 Score=160.50 Aligned_cols=393 Identities=15% Similarity=0.084 Sum_probs=258.9
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHH
Q 010721 79 DLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ 158 (503)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~ 158 (503)
.+-+++||..++.+++..+.+++....+++.-......|+ +...+-|+.-+|++.+....+++-|+.|++|-|..++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg---s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG---SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence 3557789999999999999999999999988888888888 5556789999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhh------hhHH--HHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHH
Q 010721 159 IDTIPLILGAIISAQA------HSLD--EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL 230 (503)
Q Consensus 159 ~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 230 (503)
++..+.++|+.+-..+ +.++ ....+..+.+.++-........+..-||+++||..+..+-.++..+|.++|.
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ 193 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF 193 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence 9999999999987765 3444 6677889999988888888788999999999999999999999999999999
Q ss_pred HhhccCCCCC----c-hhHH--HHHhhHHHHHHHHHHh-ccccC---ChHHHHh-cCChHHHHHHHHHHcCCcchHHHHH
Q 010721 231 FLGIPAEDDP----H-WWRT--MLYIASLPGFILALGM-QFTVE---SPRWLCK-GGMLNDAKAVIANLWGESEINKAIE 298 (503)
Q Consensus 231 ~~~~~l~~~~----~-~wr~--~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (503)
++...+..+. + .|-. .|+....++.+.+++. +..++ .|....+ +.++.+-.+.+++..++........
T Consensus 194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~ 273 (480)
T KOG2563|consen 194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAI 273 (480)
T ss_pred hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHH
Confidence 9988877654 1 1555 3444444433333222 22333 2221111 1111122233333333322211111
Q ss_pred HHHHHHHhcCCCCcccchh-hhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchH-HHhhHHHHHHHHHH
Q 010721 299 EFQLVIKKDGSDLDSQWSE-LLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKL-LIGSYLGMAISMLL 376 (503)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~ 376 (503)
........ .+......+ .+....+.. ..++.......+++++++.+.|.+.||.+.-+. .++......++...
T Consensus 274 ~ygi~~g~--F~~l~~~l~~~l~~sgY~~---~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~ 348 (480)
T KOG2563|consen 274 CYGIGLGL--FNSLSTLLNLALCPSGYEG---VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLM 348 (480)
T ss_pred HHhhhHHH--HHHHHHHhhhccccccCCc---cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 11000000 000011111 111122221 235677778889999999999999999876543 44444444444222
Q ss_pred HHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010721 377 VVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 456 (503)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 456 (503)
+...... ....+.+...+...+.+..+..|+..-+..|..-|..-++..|+.+..+++.+.+-..+.+...+..+
T Consensus 349 l~~~t~~-----~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 349 LLTCTLF-----LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred HHHhhcc-----CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence 2221111 13334445555566666777788888888887655667899999999999999999999999988777
Q ss_pred ----CcchhHhHHHHHHHHHHHHHhhccCCCC
Q 010721 457 ----VAPVYAGFGGVSLLSALFAYYFIVETKG 484 (503)
Q Consensus 457 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (503)
+...-+.....+++.+++..++.++.|+
T Consensus 424 ~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 424 PPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred CCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 3333344444555555555444444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-18 Score=169.38 Aligned_cols=351 Identities=10% Similarity=0.032 Sum_probs=209.4
Q ss_pred HHHHHhhhhhhcccchhh-HhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhh----hhcc-hHHHHHHhHHHHH
Q 010721 93 SMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGC-RRTFQIDTIPLIL 166 (503)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~ 166 (503)
.++.+...+..+...+.+ ..+.+.+|+ +..++|.+..+..+.-++..|+.|.++| |+|| |+.++++.+..++
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gl--s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i 89 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGL--SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSV 89 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHH
Confidence 344444445455544444 556677799 9999999999999999999999999999 6699 5566668887777
Q ss_pred HHHHHHhhh------hHHHHHHHHHHHHhhhhhhchhhhhhhhhcC-CCCCccchhhHHHHHHHHHHHHHHHhhcc----
Q 010721 167 GAIISAQAH------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIP---- 235 (503)
Q Consensus 167 ~~~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~---- 235 (503)
+.+++-..+ .+..+++.-++.+++.....+...++..|.. +++||.+..++...+.++|.++.+.+...
T Consensus 90 ~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~ 169 (473)
T PRK10429 90 VLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY 169 (473)
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766654433 1334555667778888888888889999998 58889999988777777765555443322
Q ss_pred CC---CCCchhHHHHHhhHHHHHHHHHHh-ccccCChHHHH---hcCChHHHHHHHHHHcCCcchHHHHHHHH-HHHHhc
Q 010721 236 AE---DDPHWWRTMLYIASLPGFILALGM-QFTVESPRWLC---KGGMLNDAKAVIANLWGESEINKAIEEFQ-LVIKKD 307 (503)
Q Consensus 236 l~---~~~~~wr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 307 (503)
+. +..+ |+....+.+++.++..+.. +..+|.+.... +++++.+.++..+...+++.......... ......
T Consensus 170 ~g~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~ 248 (473)
T PRK10429 170 VGGGDRGFG-FQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASN 248 (473)
T ss_pred hCCCchhhh-HHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 11 1123 8888777777766654444 44666532111 01111122333333333332222111111 000000
Q ss_pred -CCCCcccc-hhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCC
Q 010721 308 -GSDLDSQW-SELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL 385 (503)
Q Consensus 308 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (503)
.......+ .....+ . ...+.......+..+++.++.+++.||+|+|+.+.++..+..++.+.+.......
T Consensus 249 ~~~~~~~y~~~y~~~~----~---~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~- 320 (473)
T PRK10429 249 IINGFAIYYFTYVIGD----A---DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA- 320 (473)
T ss_pred HHhhheeeEEEEECCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence 00000011 111111 0 1122344556678889999999999999999998877776665555543321111
Q ss_pred CcchhhHHHHHHHHHHHHHHhcCccccccccccccCC-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010721 386 DEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGV 457 (503)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 457 (503)
....+..++...+...+. ....+...++++|..+ .+..|..+|....+..++..+++.+.|.+.+..|+
T Consensus 321 --~~~~~~~~i~~~l~g~~~-~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 321 --PHNALLIVIAGILLNIGT-ALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred --chhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 011122222222222222 2233455677788755 34457789999999999999999999999998876
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=167.59 Aligned_cols=378 Identities=14% Similarity=0.084 Sum_probs=231.2
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHH-hhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH--H
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL--I 165 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~ 165 (503)
.+..+...+...+..+...|..+...+ +.|+ +..++|.+.++..+...+.+++.|.++||+|.||-++....+. .
T Consensus 9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GL--s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l 86 (412)
T PF01306_consen 9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGL--SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL 86 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCC--CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence 455566667777777888888876665 4899 9999999999999999999999999999999777655433222 2
Q ss_pred HHHHH-HHhhh----hHH-HHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 166 LGAII-SAQAH----SLD-EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 166 ~~~~~-~~~~~----~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
.+... ..+.| |.+ ..+++-+..|+......+..-+++.++. ++.+.=.|-.-+..++|.+++..++|.+.+.
T Consensus 87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i 164 (412)
T PF01306_consen 87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI 164 (412)
T ss_dssp CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee
Confidence 22222 22222 222 2233333344444444455555554443 3345667777889999999999999988763
Q ss_pred CchhHHHHHhhHHHHHHHHHHhcc-ccCChHHHHhcC-C-hHHH---HHHHHHHcCCcchHHHHHHHHHH---HHhcCCC
Q 010721 240 PHWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGG-M-LNDA---KAVIANLWGESEINKAIEEFQLV---IKKDGSD 310 (503)
Q Consensus 240 ~~~wr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 310 (503)
. -+..||+....+++..++.++ .|+.++.....+ + .++. .+...++.+.++........... .......
T Consensus 165 ~--p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqq 242 (412)
T PF01306_consen 165 N--PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQ 242 (412)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 567788766666655544444 333322111111 1 1111 12223344444333222111110 0000000
Q ss_pred CcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchh
Q 010721 311 LDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 390 (503)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (503)
....+...+.+....... .+...++..+..++...+..++.+|+|.|+.++++..++.+=.++.++.. +
T Consensus 243 f~~y~~~~f~~~~~g~~~---~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--------~ 311 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQM---YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--------N 311 (412)
T ss_dssp HHHHHHHTSSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----------S
T ss_pred HHHHHHHHhcccccChhH---HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--------c
Confidence 112233334333333322 44677888888899999999999999999999999999988888777632 3
Q ss_pred hHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHH
Q 010721 391 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS-FSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSL 469 (503)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 469 (503)
.+.....-.+...-+...... ..-++++.+|++..++...+. +...+++.++.+.+.|.++|+.|++.+|++.+.+.+
T Consensus 312 ~~~i~~~klLH~~e~~l~lva-~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~ 390 (412)
T PF01306_consen 312 PWVISLIKLLHALEFPLLLVA-AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVL 390 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHH
Confidence 334444444444444433333 467888999999988999885 567789999999999999999999999999998888
Q ss_pred HHHHHHHhhccCCCC
Q 010721 470 LSALFAYYFIVETKG 484 (503)
Q Consensus 470 ~~~~~~~~~~~~~~~ 484 (503)
...++..+.+++.++
T Consensus 391 ~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 391 PFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHS--SSS
T ss_pred HHHHHheeeecCCCc
Confidence 887777777665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=167.12 Aligned_cols=335 Identities=17% Similarity=0.117 Sum_probs=227.9
Q ss_pred hhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhh----hhcchHHHH-HHhHHHHHHHHHHHhh-h------
Q 010721 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTFQ-IDTIPLILGAIISAQA-H------ 175 (503)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~------ 175 (503)
...+.+.+.+|+ ++...|++..+..+-.++..|+.|.++| |+||||.++ +|.++.+++.+++... +
T Consensus 23 ~~~~f~~~~~gl--~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 23 YLLYFYTDVLGL--SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 345677788899 9999999999999999999999999999 899876655 5888888888777765 4
Q ss_pred -hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCC-CCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc------hhHHHH
Q 010721 176 -SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH------WWRTML 247 (503)
Q Consensus 176 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~------~wr~~~ 247 (503)
....+.+.-++..++.........++..|..+ +++|.+..++-+.+..+|.++...+...+.+..+ +|++..
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 23345777777899999999999999999997 4689999999998888888766666655543222 499999
Q ss_pred HhhHHHHHHHHHHhcc-ccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHH-HHhcCC--CCcccchhhhccCc
Q 010721 248 YIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV-IKKDGS--DLDSQWSELLEEPH 323 (503)
Q Consensus 248 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~ 323 (503)
++.+++.++..++.++ .+|.++...+++++.+-.+..+...+++............ ...... .........+.+.
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~- 259 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE- 259 (428)
T ss_pred HHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-
Confidence 9988888877655544 6772222122222223333344444443332222111111 111100 0011111122222
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Q 010721 324 SRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIF 403 (503)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (503)
...+.......+..+++.++.++++||+|+|+.+..+.++.+++.+++.+... .+.........+.+
T Consensus 260 ------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~l~g 326 (428)
T PF13347_consen 260 ------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-------GSPWLVLILFILAG 326 (428)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhH
Confidence 11334455778888999999999999999999999999999888888776432 12233333333333
Q ss_pred HHhcCccccccccccccCCc-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 010721 404 TFAIGAGPVTGLVIPELSSN-------RTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVA 458 (503)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 458 (503)
..........+++.+|..+. +..|...|+.+....++..+++.+.+.+.+..|+.
T Consensus 327 i~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 327 IGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 33333446677888887763 45699999999999999999999999999887754
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-21 Score=160.93 Aligned_cols=360 Identities=15% Similarity=-0.002 Sum_probs=218.7
Q ss_pred CCchHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHH
Q 010721 82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQID 160 (503)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~ 160 (503)
..+|...++..|+..|-..++....+....++..|.++ +.++..++.+.|+....+.++++|++.|| +|-|..-++-
T Consensus 39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni--~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~ 116 (459)
T KOG4686|consen 39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNI--EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL 116 (459)
T ss_pred hhhHHHHHHHHHHhcccceeecCCchhhhhhhhccccc--ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence 34567778888888888888888888888888888888 88889999999999999999999999996 6888776666
Q ss_pred hHHHHHHHHHHH---hhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC
Q 010721 161 TIPLILGAIISA---QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 161 ~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 237 (503)
+....+|.+.++ ..+.+|.+.++||+.|+|.-...++-+.+...||..||.+.++|+.....-+|..+--.+.+++.
T Consensus 117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 666667776665 45899999999999999998888999999999999999999999999888888776655555544
Q ss_pred CCCch-----hHH----HHHhhHHHHHHHHHHh--ccccCCh--HHHHhc-CChHHHHHHHHHHcCCcchHHHHHHHHHH
Q 010721 238 DDPHW-----WRT----MLYIASLPGFILALGM--QFTVESP--RWLCKG-GMLNDAKAVIANLWGESEINKAIEEFQLV 303 (503)
Q Consensus 238 ~~~~~-----wr~----~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (503)
+..+. -.. ...+....+....+.. .-..|.. +.+..+ +...+..+ +.....-.............
T Consensus 197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge~pk-Ltdv~~f~ppfw~~~iicv~ 275 (459)
T KOG4686|consen 197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGEEPK-LTDVNTFYPPFWVLVIICVL 275 (459)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCCcc-cccccccCccHHHHHHHHHH
Confidence 32210 000 0111111111111111 1111110 000000 00000000 00000000000000000000
Q ss_pred HHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcC
Q 010721 304 IKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSL 383 (503)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (503)
. ...........+.+-...+..... .++...+.......+.+++.|.++||+|++..++.+..+..+..-...+...
T Consensus 276 y-yva~fPFi~lg~~fF~~rfGlS~~-~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~- 352 (459)
T KOG4686|consen 276 Y-YVAWFPFITLGPMFFQKRFGLSAV-SAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF- 352 (459)
T ss_pred H-HHHHHHHhhhhHHHHHHhhCCChh-hccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh-
Confidence 0 000000011112222222332222 1444455566677788899999999999998877766555444333332211
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010721 384 PLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 456 (503)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 456 (503)
.+++.......+..-..+.. .+..++.++|.++.|++.|.++++.++|-++.|.+.|.+.|..|
T Consensus 353 -----lsPy~~m~~lGLsysllAcs----lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 353 -----LSPYTSMTFLGLSYSLLACS----LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred -----ccHHHHHHHHhhhHHHHHHH----HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 12232222222222222222 34456677888999999999999999999999999999999776
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=166.70 Aligned_cols=396 Identities=15% Similarity=0.163 Sum_probs=241.8
Q ss_pred chHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcc-hHHHHHHhH
Q 010721 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDTI 162 (503)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~ 162 (503)
..|+.+++..+..++.+...+++.+..-.+.++++.+.+....|++.++..++.+++++.+|++..|.+. |+.++.|.+
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i 110 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL 110 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence 3466688888899999999999988887777777776688899999999999999999999999999997 999999999
Q ss_pred HHHHHHHHH-Hhh---h-hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC
Q 010721 163 PLILGAIIS-AQA---H-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 163 ~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 237 (503)
+..+++++. ++. + ..+.++++|++.|+|.| .....-+|+++-...++|.++++....+..+|.++||.++..+.
T Consensus 111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 999999998 433 3 67889999999999987 56677789999888888999999999888888888887775543
Q ss_pred CCC------------chhHHHHHhhHHHHHHHHHHhc-cccCChHHHHhcCChHH--HHHHHHHHcCCcchHHHH--HH-
Q 010721 238 DDP------------HWWRTMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLND--AKAVIANLWGESEINKAI--EE- 299 (503)
Q Consensus 238 ~~~------------~~wr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~- 299 (503)
... +-+..+-|+.+++.++.++..+ ++.|.++...+++.+++ .++..++....+...... ..
T Consensus 190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~vc~~ 269 (488)
T KOG2325|consen 190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSDIEKVKKPKLDWVAVLVCIF 269 (488)
T ss_pred hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccchhhhccCChhHHHHHHHHH
Confidence 211 0145566777777777765554 46665543322211111 111111111111111110 00
Q ss_pred --HHHHHHhcC-CCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhh-cccCCchHHHhhHHHHHHHHH
Q 010721 300 --FQLVIKKDG-SDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLM-DKEGRQKLLIGSYLGMAISML 375 (503)
Q Consensus 300 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~ 375 (503)
......... .............. .....+.+.+...++.++..+...+...... .++.+|+.+..+++.......
T Consensus 270 ~~~~~~~~~~~iet~~~~~~m~~y~w-~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~ 348 (488)
T KOG2325|consen 270 LRFVVNFIATTIETLSSALTMVMYGW-TGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYY 348 (488)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhcc-ccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhh
Confidence 000000000 00001111111111 1111122233444444544444444444443 344555555555444443333
Q ss_pred HHHHHhcCCCC-----c-----------------chhhHHHHHHHHHHHHHHhcCc-cccccccccccCCcccchhhHHH
Q 010721 376 LVVGATSLPLD-----E-----------------DFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGF 432 (503)
Q Consensus 376 ~~~~~~~~~~~-----~-----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~ 432 (503)
+.......... . ...+...+.......++.+.-+ .....+.-+|...++++++..|+
T Consensus 349 i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~ 428 (488)
T KOG2325|consen 349 IFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGV 428 (488)
T ss_pred eeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEE
Confidence 33222111110 0 0011111111112222222211 12345667788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccC
Q 010721 433 SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 433 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (503)
+......+..++|.+...+....|+++.+.+.+...++...+...+.++
T Consensus 429 ~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~r 477 (488)
T KOG2325|consen 429 FSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLKR 477 (488)
T ss_pred EEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888777666666655554444433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-17 Score=156.25 Aligned_cols=355 Identities=15% Similarity=0.105 Sum_probs=224.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH-HhHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhchhhh
Q 010721 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLILGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVP 199 (503)
Q Consensus 123 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~ 199 (503)
++..++..++..+..++..|+.|.++|+-|+||.++. ..++..+.+.+..+. .+++...++-++.-++.+...+...
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999998776665 455555666666664 4455555566667778888889999
Q ss_pred hhhhhcCCCCCc--------------------------cchhhHHHHHHHHHHHHHHHhhccCCCCCc-------hhHHH
Q 010721 200 IYISEVAPTKYR--------------------------GSLGTLCQVGTCLGIITSLFLGIPAEDDPH-------WWRTM 246 (503)
Q Consensus 200 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~-------~wr~~ 246 (503)
+++.|..+++++ ++..+.-.....+|.++.-++...+....+ .-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 899998888888888887766544321111 15888
Q ss_pred HHhhHHHHHHHHHH-hccccCChHHHHhcCCh-------HHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhh
Q 010721 247 LYIASLPGFILALG-MQFTVESPRWLCKGGML-------NDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL 318 (503)
Q Consensus 247 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (503)
+.+.++.-++..+. .+++||.|+....+... ++-.+..++.++.++........... ............+
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~--~dg~~ti~~~~~i 306 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLY--SDGVNTIISFAGI 306 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 88877776666444 45577765421111111 12222333333333222221111110 0011101122222
Q ss_pred hccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCc--hHHHhhHHHHHHHHHHHHH--HhcCCCCcchhhHHH
Q 010721 319 LEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQ--KLLIGSYLGMAISMLLVVG--ATSLPLDEDFSHNLS 394 (503)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 394 (503)
+....+..... .......+..+.+++|.++.|++.||+|.| +.+..+.++..+..+...+ .... ....+.+.
T Consensus 307 ~a~~~lg~s~~-~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~---~g~~~~~~ 382 (477)
T PF11700_consen 307 YATEVLGMSTT-QLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSF---FGLKSPWE 382 (477)
T ss_pred HHHHhcCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcc---cCcccHHH
Confidence 22222221111 133556677889999999999999999998 6666655555332222211 1110 00123333
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchhHhHHHHHHHHHH
Q 010721 395 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSAL 473 (503)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 473 (503)
++...++.+.+..+..+..-++.+++.|+++.+..+|++.......+.+||.+.|.+.+.+| .+..+....++.+++.+
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ 462 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLI 462 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 44444455555555678888999999999999999999999999999999999999999998 67777766666666665
Q ss_pred HHHhhccCCCC
Q 010721 474 FAYYFIVETKG 484 (503)
Q Consensus 474 ~~~~~~~~~~~ 484 (503)
+. ..++..|+
T Consensus 463 ll-~~v~~~~g 472 (477)
T PF11700_consen 463 LL-FFVDVEKG 472 (477)
T ss_pred HH-hhccchhh
Confidence 44 44554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-17 Score=158.34 Aligned_cols=348 Identities=11% Similarity=0.049 Sum_probs=194.6
Q ss_pred HHHHhhhhhhcccchh-hHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh----cchHHH-HHHhHHHHHH
Q 010721 94 MSNFLFGYHIGVMNGP-IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL----GCRRTF-QIDTIPLILG 167 (503)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~ 167 (503)
++.+..........+. ...+.+.+|+ +..++|++.+...+..++..++.|+++||. |||+.+ +++.+...+.
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl--~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~ 92 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGV--GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF 92 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence 3444444444444333 3566777799 999999999999999999999999999996 777755 5565555544
Q ss_pred HHHHH-h----hh--hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCC-CCccchhhHHHHH-----HHHHHHHHHHhhc
Q 010721 168 AIISA-Q----AH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVG-----TCLGIITSLFLGI 234 (503)
Q Consensus 168 ~~~~~-~----~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~ig~~~~~ 234 (503)
.++.. . .+ ..+.+++.-++.+++.+...+...++..+...+ ++|.+..++-..+ ..+|..++|+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 93 SVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred HHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 1 11 223344456777888888888777777777654 5688776665443 3456667777765
Q ss_pred cCCCCCc-hhHHHHHhhHHHHHHHH-HHhccccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHH-HHHHhcCCCC
Q 010721 235 PAEDDPH-WWRTMLYIASLPGFILA-LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQ-LVIKKDGSDL 311 (503)
Q Consensus 235 ~l~~~~~-~wr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 311 (503)
....... .|.....+.++++++.. +.....+|++.. +.++....+..+.+.+++.......... ........
T Consensus 173 ~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~-- 247 (448)
T PRK09848 173 SSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR---IVAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAV-- 247 (448)
T ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC---CccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH--
Confidence 4422111 12222223333333332 223345665321 1111122223334444433322211111 11100000
Q ss_pred cccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhh
Q 010721 312 DSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSH 391 (503)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (503)
......+......... ...........++.+++.++.+++.||+++|+.+.++.++..++.+++.+... .+.
T Consensus 248 -~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~------~~~ 319 (448)
T PRK09848 248 -SASSLFYVRYVLNDTG-LFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV------WSL 319 (448)
T ss_pred -hhhheeeEeeecCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc------hhH
Confidence 0011111111111111 11223333335667788999999999999999999988887777666554211 111
Q ss_pred HHHHHHHHHHHHHHhcCccccccccccccCCcc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010721 392 NLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR-------TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGV 457 (503)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 457 (503)
+.......+...+.+ ...+...++.+|..|.+ ..|...|+.+....+|..+++.+.+.+.+..|+
T Consensus 320 ~~~~~~~~l~g~G~~-~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 320 PVALVALAIASIGQG-VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222222222222222 22345566677776543 469999999999999999999999999988776
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-16 Score=153.74 Aligned_cols=331 Identities=13% Similarity=0.029 Sum_probs=198.6
Q ss_pred hhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh----hcchHHHH-HHhHHHHHHHHHHHhhhh------H
Q 010721 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRRTFQ-IDTIPLILGAIISAQAHS------L 177 (503)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~-~~~~~~~~~~~~~~~~~~------~ 177 (503)
....+.+.+|+ ++..+|.+..+.-+--++..|+.|.++|| +||||.++ ++.+..+++.+++-..++ .
T Consensus 32 l~~fyt~~~Gl--~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~ 109 (460)
T PRK11462 32 MMFFYTDIFGI--PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM 109 (460)
T ss_pred HHHHHHHhhCC--CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 34566788899 99999999999999999999999999995 79876554 577777777766654442 3
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhcCC-CCCccchhhHHHHHHHHHHHHHHHhhccCCCCC------chhHHHHHhh
Q 010721 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP------HWWRTMLYIA 250 (503)
Q Consensus 178 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~------~~wr~~~~~~ 250 (503)
..+.+.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+.... .+|+....+.
T Consensus 110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~ 189 (460)
T PRK11462 110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL 189 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 445566677788888888888889999987 678999999999999988877766643322211 1388877777
Q ss_pred HHHHHHHHHHhc-cccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHH-HHHHHHh--cCCCCcccchhhhccCcccc
Q 010721 251 SLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE-FQLVIKK--DGSDLDSQWSELLEEPHSRV 326 (503)
Q Consensus 251 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 326 (503)
+++.+++.++.+ ..+|.++. +.++...++.++...+++........ ....... ........+...+....
T Consensus 190 ~ii~~i~~~i~~~~~kE~~~~---~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~--- 263 (460)
T PRK11462 190 SVVAFMMLAFCFFTTKERVEA---PPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE--- 263 (460)
T ss_pred HHHHHHHHHHHHhcceeccCC---CccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH---
Confidence 777666554443 35554321 11111123333443333332222111 0100000 00000011111111110
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHh
Q 010721 327 AFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA 406 (503)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (503)
..........+.++++.++++++.||+++|+....+..+..+..+++.+... ...........+. +...
T Consensus 264 ----~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~-g~~~ 332 (460)
T PRK11462 264 ----VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM------QASITMFVFIFVI-GVLH 332 (460)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch------hHHHHHHHHHHHH-HHHH
Confidence 1223455667888889999999999999998876555444433333322111 1111122222222 2222
Q ss_pred cCccccccccccccCC-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 010721 407 IGAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVA 458 (503)
Q Consensus 407 ~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 458 (503)
....++.+++.+|..+ .+..|...+.......+|..+++.+.|.+.+..|+.
T Consensus 333 ~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~ 391 (460)
T PRK11462 333 QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYD 391 (460)
T ss_pred HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2223444556666654 333456667777888999999999999999887763
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=153.38 Aligned_cols=279 Identities=14% Similarity=0.018 Sum_probs=173.2
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC-----------
Q 010721 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP----------- 240 (503)
Q Consensus 172 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~----------- 240 (503)
+...+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+.++++|.+++|++++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 355789999999999999999999999999999999999999999999999999999999998766321
Q ss_pred ----chhHHHHHhhHHHHHHHHHHhcc--ccCChHHHHhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccc
Q 010721 241 ----HWWRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314 (503)
Q Consensus 241 ----~~wr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (503)
.+|+++|++.+.+.++..+.+.+ +||.+....++...++..+ .++..+.+...............+.. ...
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~f~yvg~e~~--~~~ 161 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQ-KTSAFQFTHLVLGALGIFVYVGAEVS--AGS 161 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccc-hhhHHhhHHHHHHHHHHHHHHHHHHH--HHH
Confidence 23999999766665554444433 4543211100000000000 00111111111110111111111111 122
Q ss_pred chhhhc-cCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHH
Q 010721 315 WSELLE-EPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 393 (503)
Q Consensus 315 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (503)
|...+. ++..........+...+.+..+.++|+++.+++.||+++++.+.++.++..++.++.... +...
T Consensus 162 w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~---------~~~~ 232 (310)
T TIGR01272 162 FLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT---------HGYV 232 (310)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc---------CCHH
Confidence 222222 221111112235566888899999999999999999999998877777666655444331 1111
Q ss_pred HHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHH
Q 010721 394 SILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFG 465 (503)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 465 (503)
..+... ..+.+.....|...+...+..|++ .+++.++. ....+|+++.|.+.|.+.|..|.+..+++..
T Consensus 233 ~~~~~~-l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 233 AMWFVL-ALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 222222 223333344566677777777754 56777775 5677999999999999999999877776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-17 Score=149.33 Aligned_cols=388 Identities=15% Similarity=0.100 Sum_probs=250.6
Q ss_pred HHHHHHHHHhhhhhhc-ccchhhHhHHHhhC----CCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHhH
Q 010721 89 VLIASMSNFLFGYHIG-VMNGPIVSIAKELG----FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTI 162 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~----~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~ 162 (503)
+..+...-+...++.. +-....-++..+++ + |+.++.-+.+.|..-.-+..+++|+++||+ |+|++++.|.+
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~--~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGF--DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCc--ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4455555555555443 23334455556665 7 777777788888877778999999999996 99999999999
Q ss_pred HHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCC--ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 010721 163 PLILGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAED 238 (503)
Q Consensus 163 ~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 238 (503)
+..+|.++.+.. .+...++++-.+.++|.|..-+...+++.|.+|+++ |...+++++++.++|.+++|++.+++.+
T Consensus 101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 999999999988 478899999999999999999999999999998654 7789999999999999999999999999
Q ss_pred CCchhHHHHHhhHHHHHHHHHHhccccCC---------hHHHHhcCChHHHHHH----HHH----HcCCcch--------
Q 010721 239 DPHWWRTMLYIASLPGFILALGMQFTVES---------PRWLCKGGMLNDAKAV----IAN----LWGESEI-------- 293 (503)
Q Consensus 239 ~~~~wr~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~----~~~----~~~~~~~-------- 293 (503)
..+ |...|...++-....++..+..++. |.....+......... ... ....+..
T Consensus 181 ~~g-~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (498)
T COG3104 181 NYG-WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVIS 259 (498)
T ss_pred hhC-HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 9999999888877776666554421 1100000000000000 000 0000000
Q ss_pred ---------------H--HHHHHHHHH------------HHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHH
Q 010721 294 ---------------N--KAIEEFQLV------------IKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNF 344 (503)
Q Consensus 294 ---------------~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (503)
+ ++.+..... ...+.......+.+-..++.... .-.......++..+.-+
T Consensus 260 i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g-~~vp~~~fQslNp~~Ii 338 (498)
T COG3104 260 ILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFG-FEVPPAWFQSLNPFFII 338 (498)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccc-eecCHHHHHhhCHHHHH
Confidence 0 000000000 00001111111111111222000 11125577778888888
Q ss_pred HHHHhHHHhhcccCCc--h-----HHHhhHHHHHHHHHHHHHHhcCCCC-cchhhHHHHHHHHHHHHHHhcCcccccccc
Q 010721 345 AGALCASYLMDKEGRQ--K-----LLIGSYLGMAISMLLVVGATSLPLD-EDFSHNLSILGTLFYIFTFAIGAGPVTGLV 416 (503)
Q Consensus 345 ~~~~~~g~l~d~~g~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (503)
+..++..++..|.+++ . -.-++..+++++++++......... ....+.++++...++....-....|+...+
T Consensus 339 i~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~ 418 (498)
T COG3104 339 LFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSM 418 (498)
T ss_pred HHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 8888888887774433 1 2345556666666666554222221 233445555566666666667778889999
Q ss_pred ccccCCcccchhhHHHHHHHHHHHHHHHHHHHHH------HHHHcCCcchhHhHHHHHHHHHHHHHhhcc
Q 010721 417 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD------LVETFGVAPVYAGFGGVSLLSALFAYYFIV 480 (503)
Q Consensus 417 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 480 (503)
+....|+...+..+++.......+..++..+.+. ..+.......|..++...++..+......|
T Consensus 419 ~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 419 VTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999998888888888877763 334444556677777776666665544433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-15 Score=137.45 Aligned_cols=334 Identities=16% Similarity=0.093 Sum_probs=219.0
Q ss_pred hHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh----hcchH-HHHHHhHHHHHHHHHHHhhhh------HH
Q 010721 110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRR-TFQIDTIPLILGAIISAQAHS------LD 178 (503)
Q Consensus 110 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~ 178 (503)
+-.+.+.+|+ ++..+|.+..+--+--++.-|+.|.+.|| +||+| .++.+.+..++.+.++-.+++ ..
T Consensus 36 l~fYTdv~Gi--s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ 113 (467)
T COG2211 36 LFFYTDVFGL--SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLI 113 (467)
T ss_pred HHHHhcccCC--cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchH
Confidence 4566788899 99999999999999999999999999995 78855 455687888888888887763 44
Q ss_pred HHHHHHHHHHhhhhhhchhhhhhhhhcCC-CCCccchhhHHHHHHHHHHHHHHHhhccC----CCC--CchhHHHHHhhH
Q 010721 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPA----EDD--PHWWRTMLYIAS 251 (503)
Q Consensus 179 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~~~~~l----~~~--~~~wr~~~~~~~ 251 (503)
..++.-.+.+++.......-.++..+..+ ++||.+..++-+.+.++|.++...+...+ .+. ..+|+...++.+
T Consensus 114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~ 193 (467)
T COG2211 114 YALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG 193 (467)
T ss_pred HHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 46667788899999888888899999985 56799999999998888866554443322 222 123888888888
Q ss_pred HHHHHHHHHhcc-ccCChHHHHhcC--ChHHHHHHHHHHcCCcchHHHHHHHH-HHHHhcCCCCcccchhhhccCccccc
Q 010721 252 LPGFILALGMQF-TVESPRWLCKGG--MLNDAKAVIANLWGESEINKAIEEFQ-LVIKKDGSDLDSQWSELLEEPHSRVA 327 (503)
Q Consensus 252 ~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (503)
+++++..+..++ .+|.+......+ .+.+-++......+++.......... ........ ......+-.......
T Consensus 194 vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~---~s~~~yy~~y~lg~~ 270 (467)
T COG2211 194 VIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIR---GSIMVYYVTYVLGDP 270 (467)
T ss_pred HHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHH---hhhhheeEEEEcCCh
Confidence 888777666655 666543111111 11222222333333333322222111 11111000 011111111111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhc
Q 010721 328 FIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI 407 (503)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (503)
. ............+.+++.++..++.+|+|+|++..++.++..++.+++.+.+. + ...++.+..++.+.+.
T Consensus 271 ~-l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~-------~-~~~l~~~~~~i~~~g~ 341 (467)
T COG2211 271 E-LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA-------G-SVVLIVVALIIAGVGT 341 (467)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC-------c-chHHHHHHHHHHHHHh
Confidence 1 11334455566667777899999999999999999999999999888887541 2 2233333323333333
Q ss_pred -CccccccccccccCC-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010721 408 -GAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGV 457 (503)
Q Consensus 408 -~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 457 (503)
...++.+++++|..+ .+..|...|....+.-+|.+++..+.|++.+..|+
T Consensus 342 ~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 342 GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 335677888888754 35668899999999999999999999999998874
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-15 Score=133.27 Aligned_cols=347 Identities=15% Similarity=0.117 Sum_probs=218.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH-HhHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhhhhhchh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLILGAIISAQAHS---LDEMLWGRFLVGLGIGVNTVL 197 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~ 197 (503)
+....+...++..+..++..|+.|.++|+.|+||..+- ...+..+..++..++++ ++..+++-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 34557888899999999999999999999998766554 55556666666666654 444555678889999999999
Q ss_pred hhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhh---ccCC---------------CCCchhHHHHHhhHHHHHHHHH
Q 010721 198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG---IPAE---------------DDPHWWRTMLYIASLPGFILAL 259 (503)
Q Consensus 198 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~---~~l~---------------~~~~~wr~~~~~~~~~~~~~~~ 259 (503)
-.+++.+..++++-++..++-.....+|.++.-++. .... +... -|..+.+.++-.++..+
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~i 214 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFAL 214 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHh
Confidence 999999999998888877776666666655554442 1111 1112 67888887777776655
Q ss_pred Hhcc-ccCChHHH-----HhcCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCccccchhhhHH
Q 010721 260 GMQF-TVESPRWL-----CKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGA 333 (503)
Q Consensus 260 ~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (503)
-.++ .++.++-. ...+..++-...+++.++.++........... .+...........+....+..... ...
T Consensus 215 Pm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~--~DGv~til~~~~~fg~~~~gls~~-~ll 291 (438)
T COG2270 215 PMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFY--IDGVNTILAMGGVFGAADLGLSST-ELL 291 (438)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH--HhhHHHHHHHHHHHHHHHcCccHH-HHH
Confidence 5544 55544211 00111222233344444444322221111110 000000011111222111111111 133
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccc
Q 010721 334 LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVT 413 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (503)
.......+..++|+++.|++.||+|.|+++..+.++..+.++...+.. ....++...++.+.+..+.+...
T Consensus 292 l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~---------~~~~f~i~gll~g~s~G~~qA~S 362 (438)
T COG2270 292 LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE---------GELDFWILGLLVGTSLGGAQASS 362 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHhcchHHHHH
Confidence 455667888899999999999999999988888887777666655522 23334444444455555566778
Q ss_pred cccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cchhHhHHHHHHHHHHHHHhhccCC
Q 010721 414 GLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGV-APVYAGFGGVSLLSALFAYYFIVET 482 (503)
Q Consensus 414 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (503)
-++..+.+|+++.++.+|+++........++|.+.+.+.+.+|. +..+....++.+++.+ .+...+..
T Consensus 363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~ 431 (438)
T COG2270 363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVP 431 (438)
T ss_pred HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCC
Confidence 89999999999999999999999999999999999999998884 4444444444444433 33344443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=151.06 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=138.0
Q ss_pred cchhhHhHH-HhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHH---HHhhhhHHHHH
Q 010721 106 MNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEML 181 (503)
Q Consensus 106 ~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~ 181 (503)
....+|.+. +++|. +..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+. ...+++...++
T Consensus 269 ~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (490)
T PRK10642 269 LLTYMPSYLSHNLHY--SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIF 346 (490)
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 334556554 56787 7777788888899999999999999999999999988887654433322 22345677888
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHh
Q 010721 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (503)
Q Consensus 182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~ 261 (503)
+++++.|++.+........++.|.+|++.|+.++++.+....++..++|.+.+++.+..++|+..+++..+++++.++..
T Consensus 347 ~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 347 AGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 89999999888777778888999999999999999754445555678888888776654448888777777777777777
Q ss_pred ccccCChHHHHhc-----CChHHHHHHHHHHc
Q 010721 262 QFTVESPRWLCKG-----GMLNDAKAVIANLW 288 (503)
Q Consensus 262 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 288 (503)
+++||+|+++.++ ++.+++++.+++++
T Consensus 427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 427 VTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 7789999887654 77778888877765
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-13 Score=123.07 Aligned_cols=327 Identities=18% Similarity=0.126 Sum_probs=212.3
Q ss_pred hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhc-----chHHHHH-HhHHHHHHHHHHHhh-----h-----
Q 010721 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQI-DTIPLILGAIISAQA-----H----- 175 (503)
Q Consensus 112 ~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~----- 175 (503)
.+..|+++ .....+.+.++..+.. ...+.+|+.||+.+ ||..+++ |.++...+..+..++ .
T Consensus 5 VMIvEL~v--pA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~ 81 (403)
T PF03209_consen 5 VMIVELGV--PAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS 81 (403)
T ss_pred hHHHHhcc--HHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 35678888 8888888888888876 46999999999999 8876665 666666666665543 2
Q ss_pred ---hHH---HHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 176 ---SLD---EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 176 ---~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
.+. ...+.-.+.|+|.+...+...+++.|..|+++|+++.++......+|.+++.++.+.+.+.+..-|..-.+
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI 161 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 222 23345678999999999999999999999999999999999999999999999999887766533333333
Q ss_pred hH--HHHHHHHHHhccccCChHHHHh---cCChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCcc
Q 010721 250 AS--LPGFILALGMQFTVESPRWLCK---GGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324 (503)
Q Consensus 250 ~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (503)
.. ++.++..++..+-.|....... ++++..-.+..++...++............... ....+.+..|+-
T Consensus 162 ~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a------~~~QD~iLEPyg 235 (403)
T PF03209_consen 162 QGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLA------FFMQDVILEPYG 235 (403)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHH------HHhhHHHcCCch
Confidence 22 2222222333333333221111 222233344445555444433332222111110 111222222221
Q ss_pred c---cchhhhHHHHHHHHHHHHHHHHHhHHHhhc-ccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Q 010721 325 R---VAFIGDGALASLLVGVTNFAGALCASYLMD-KEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF 400 (503)
Q Consensus 325 ~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (503)
. .........++...+.+.+++....|++.. |.++++...+++.+..+++.++....... ..+.+-...
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~-------~~~~~~~~~ 308 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG-------SPWLFRPGV 308 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHH
Confidence 1 111223556677888888999988888776 67888888888888888877776654322 233344444
Q ss_pred HHHHHhcCcc-ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 401 YIFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 454 (503)
Q Consensus 401 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 454 (503)
+..+++.|.. ....+.+.+...+++.|..+|.....+.+...++..+.|.+.|.
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555553 22334556777788899999999999999999999999988874
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=123.32 Aligned_cols=134 Identities=21% Similarity=0.333 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCC
Q 010721 129 VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208 (503)
Q Consensus 129 ~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 208 (503)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc
Q 010721 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 209 ~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
++|++.+++.+....+|..+++.+.+.+.+..+ |++.+++.++..++..+..++
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988777 999999988777776655544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-14 Score=137.05 Aligned_cols=180 Identities=19% Similarity=0.191 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~ 166 (503)
..+.++++..+..++..+.+...+..+.+.|++ ++.+.|++.+.+-++..+...+..+..-|.-|-+.+-+|++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i--~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKI--SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC--CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 346677778888888888888999999999999 888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhh--------------------h------------------------------h-HH-HHHHHHHHHHhhhhhh
Q 010721 167 GAIISAQA--------------------H------------------------------S-LD-EMLWGRFLVGLGIGVN 194 (503)
Q Consensus 167 ~~~~~~~~--------------------~------------------------------~-~~-~l~~~r~l~G~~~~~~ 194 (503)
+++++++= + + ++ .++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 99998861 0 0 22 4666899999999999
Q ss_pred chhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC------------------chhHHHHHhhHHHHHH
Q 010721 195 TVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP------------------HWWRTMLYIASLPGFI 256 (503)
Q Consensus 195 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~------------------~~wr~~~~~~~~~~~~ 256 (503)
++...+|+-|...+++-...+|+......+|.++|.++++++.+.+ |.|+.-|++.+.+.++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765311 1288888888888888
Q ss_pred HHHHhccccCCh
Q 010721 257 LALGMQFTVESP 268 (503)
Q Consensus 257 ~~~~~~~~~~~~ 268 (503)
..+.++++|+..
T Consensus 335 ~a~p~f~fPk~l 346 (735)
T KOG3626|consen 335 SAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHhCcccC
Confidence 888888888653
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=144.83 Aligned_cols=140 Identities=14% Similarity=-0.024 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcC
Q 010721 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206 (503)
Q Consensus 127 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 206 (503)
.+...+..++..++.++.|+++||+|||++++++.++.++++++.+++++...+++++++.|++.+..++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34466777899999999999999999999999999999999999999998888889999999998889999999999999
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccccCCh
Q 010721 207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268 (503)
Q Consensus 207 ~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~ 268 (503)
|.++|++++|+.++...+|.++||++++.+.... ...+|++.+++.++.+++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999998776542 56778887777777777777778863
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-16 Score=155.57 Aligned_cols=177 Identities=18% Similarity=0.221 Sum_probs=3.0
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
++.+++..+......+.....++.++++|++ ++.+.|++.+.+-++..+..++..++.+|..|-+.+.+|.++.++++
T Consensus 5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l--~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~ 82 (539)
T PF03137_consen 5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGL--SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS 82 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence 4455566666677777888889999999999 99999999999999999999999999999888889999999999999
Q ss_pred HHHHhh----h----------------------------------------------hHHHHHHHHHHHHhhhhhhchhh
Q 010721 169 IISAQA----H----------------------------------------------SLDEMLWGRFLVGLGIGVNTVLV 198 (503)
Q Consensus 169 ~~~~~~----~----------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~ 198 (503)
+++++= + -+..++++.++.|+|....++..
T Consensus 83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 988751 0 13347778999999999999999
Q ss_pred hhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC---------------------chhHHHHHhhHHHHHHH
Q 010721 199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------------------HWWRTMLYIASLPGFIL 257 (503)
Q Consensus 199 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~---------------------~~wr~~~~~~~~~~~~~ 257 (503)
.+|+-|..++++-+..+|++.+...+|.++|.++++.+.+.+ |.|..-|++.+++.++.
T Consensus 163 ~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 163 ITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998766411 12667777777777777
Q ss_pred HHHhccccCC
Q 010721 258 ALGMQFTVES 267 (503)
Q Consensus 258 ~~~~~~~~~~ 267 (503)
.+.++++|+.
T Consensus 243 aipl~~FPk~ 252 (539)
T PF03137_consen 243 AIPLFFFPKK 252 (539)
T ss_dssp ----------
T ss_pred HHHHHcCCcc
Confidence 7777777754
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-14 Score=135.02 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=129.9
Q ss_pred hhhHh-HHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010721 108 GPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186 (503)
Q Consensus 108 ~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 186 (503)
...|. +++++|+ ++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......+.++.+.+++.+++
T Consensus 237 ~~~p~~l~~~~~~--~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 314 (393)
T PRK15011 237 INMPLFIINELHL--PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL 314 (393)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34554 4567888 88888998888888888899999999999999998888777666665555667888888889999
Q ss_pred HHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccccC
Q 010721 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266 (503)
Q Consensus 187 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~ 266 (503)
.+++.+...+....+..|.+|++ |++++++++....+|..+++.+++.+.+..+ |+..|++.+++.++.++..++.+|
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99888887777788889999864 9999999999999999999999999988777 999999988888888777777654
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.4e-13 Score=126.11 Aligned_cols=348 Identities=17% Similarity=0.110 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHH----HHHHHHHHHhhhhhhhhhcchHHHHHHhH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIF----IAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~----~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 162 (503)
.......+-.|..++......+..+.....++.+.+ ...+...... .+...+.++..|.++||+|||..+.+..+
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~-~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~ 100 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQ-LENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF 100 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCcc-chhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence 334555555566666666666666666666654322 2233333333 67778899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhh--hhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 163 PLILGAIISAQAHSLDEMLWGRFLVGLGI--GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
...+..++..+.. +|.++ +.|+.. +.......++++|...+++|....++....+..+..++|.+++.+.+..
T Consensus 101 ~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~ 175 (463)
T KOG2816|consen 101 GTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL 175 (463)
T ss_pred HHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9999888888766 44333 444332 3456777889999999999999999999999999999999999998887
Q ss_pred chhHHHHHhhHHHHHHHHHHh-ccccCChHHHHhc---------CC--hHHHHHHHHHHcC--CcchHHHHHHHHH--HH
Q 010721 241 HWWRTMLYIASLPGFILALGM-QFTVESPRWLCKG---------GM--LNDAKAVIANLWG--ESEINKAIEEFQL--VI 304 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~ 304 (503)
+ .-..|.+..+..++..+.. .++||+-....++ ++ ..+..+..+...+ ............. ..
T Consensus 176 ~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~ 254 (463)
T KOG2816|consen 176 G-IALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSL 254 (463)
T ss_pred C-chHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHH
Confidence 7 7788888777777776555 5577763221111 01 0111111111111 1111111111111 11
Q ss_pred HhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHH-HhhcccCCchHHHhhHHHHHHHHHHHHHHhcC
Q 010721 305 KKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCAS-YLMDKEGRQKLLIGSYLGMAISMLLVVGATSL 383 (503)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (503)
...... .... .++....+....-. .+.+.+...+...++.++.. .+...++.|+....+.....+......+...
T Consensus 255 ~~~~~~-~~~~-~~yl~~~f~w~~~~-~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~- 330 (463)
T KOG2816|consen 255 PEAGGA-SDVL-LLYLKAKFGWNKKE-FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE- 330 (463)
T ss_pred HHhcCc-eeEE-EEEEeeecCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc-
Confidence 111111 0111 22222222222221 23344555666666666555 7778889888888888888888888777432
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 384 PLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 454 (503)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 454 (503)
.|. .........+.....|...+..+...+++++|+++++...+..+.+.++|.+.+.++..
T Consensus 331 -------~w~--~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 331 -------TWM--MFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred -------chh--hhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 222 22233334444455677788888899999999999999999999999999999988754
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=140.14 Aligned_cols=145 Identities=14% Similarity=0.044 Sum_probs=126.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 201 (503)
+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++++++.|++.+...+....+
T Consensus 260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 339 (420)
T PRK09528 260 GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY 339 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778999999999999999999999999999999999999999999999999999999999999999998888888899
Q ss_pred hhhcCCCCCccchhhH-HHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc-ccCC
Q 010721 202 ISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVES 267 (503)
Q Consensus 202 i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~~~ 267 (503)
+.|.+|++.|+...+. ++....+|.++++.+.+++.+..| |+..|.+.+++.++..++.++ .+++
T Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999988887665 677889999999999999998888 999999988777666544444 4443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-14 Score=135.90 Aligned_cols=158 Identities=21% Similarity=0.136 Sum_probs=134.4
Q ss_pred chhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010721 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186 (503)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 186 (503)
...+|.+.++.|. +..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+.-++
T Consensus 240 ~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK11551 240 LNWLPSLLVGQGL--SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA 317 (406)
T ss_pred HHHHHHHHHhCCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3346777788888 88889999999999999999999999999999999988877777777777777888888888899
Q ss_pred HHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccccC
Q 010721 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266 (503)
Q Consensus 187 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~ 266 (503)
.|++.+...+...+++.|.+|+++|++.+++.+....+|..+||.+++.+.+..++|...++......++..+..+++.+
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988888888999999999999999999999999999999999999999887655777777776666666555554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-14 Score=136.26 Aligned_cols=149 Identities=17% Similarity=0.058 Sum_probs=128.5
Q ss_pred chhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhH--HHHHHHH
Q 010721 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL--DEMLWGR 184 (503)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r 184 (503)
....+.+.++++. +..+.+++.+.+.++..+++++.|+++||+|||+.+.++.++.+++.++..+.++. ..+++..
T Consensus 225 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T TIGR00890 225 IGLYKPYGQSLGL--SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATV 302 (377)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 3445566778887 78888999999999999999999999999999999999999999888888777643 3345667
Q ss_pred HHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHH
Q 010721 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258 (503)
Q Consensus 185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~ 258 (503)
++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ |++.|++.+++.++..
T Consensus 303 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence 888998888888888899999999999999999999999999999999999988877 9999998887776643
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=130.84 Aligned_cols=168 Identities=26% Similarity=0.348 Sum_probs=148.6
Q ss_pred HHHHhhhhhhcccchhhHhHHHhh-CCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchH-HHHHHhHHHHHHHHHH
Q 010721 94 MSNFLFGYHIGVMNGPIVSIAKEL-GFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR-TFQIDTIPLILGAIIS 171 (503)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~ 171 (503)
+..+.............|.+.++. |. ++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 182 LAFFLLSFGYYGLLTYLPLYLQEVLGL--SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL 259 (352)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 334444445555556667666665 77 8899999999999999999999999999999999 9999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhH
Q 010721 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251 (503)
Q Consensus 172 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~ 251 (503)
.+.++.+.+++..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.+++.+
T Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~ 338 (352)
T cd06174 260 ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILA 338 (352)
T ss_pred HHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988777 999999999
Q ss_pred HHHHHHHHHhccc
Q 010721 252 LPGFILALGMQFT 264 (503)
Q Consensus 252 ~~~~~~~~~~~~~ 264 (503)
++.++..+..+++
T Consensus 339 ~~~~i~~i~~~~~ 351 (352)
T cd06174 339 ALALLAALLLLLL 351 (352)
T ss_pred HHHHHHHHHheec
Confidence 9888877666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=139.01 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=130.7
Q ss_pred hhhHhHHHhhCCCC------CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhh----hH
Q 010721 108 GPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH----SL 177 (503)
Q Consensus 108 ~~~~~i~~~~~~~~------~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~ 177 (503)
...+.+.++.|.+. .....+...++..++..++.++.|+++||+|+|+++.++.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 44466666666521 235678999999999999999999999999999999999999988877776632 34
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHH-HHHHHHHHHHHHhhccCCCCCc-----hhHHHHHhhH
Q 010721 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH-----WWRTMLYIAS 251 (503)
Q Consensus 178 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~~~~~l~~~~~-----~wr~~~~~~~ 251 (503)
+.+++.+++.|++.+...+....++.|++|+++|++++++.+ ...++|.++||++++++.+..+ +|+..|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 667788999999999888999999999999999999999997 6789999999999999887632 2999999888
Q ss_pred HHHHHHHHHhc-cccCC
Q 010721 252 LPGFILALGMQ-FTVES 267 (503)
Q Consensus 252 ~~~~~~~~~~~-~~~~~ 267 (503)
++.++..++.+ +++|+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 87777655554 46654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=133.13 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=132.7
Q ss_pred cchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 010721 106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185 (503)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 185 (503)
....++.+.++.|. + ..++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.++.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (399)
T PRK05122 235 IATFITLYYAARGW--D--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAA 310 (399)
T ss_pred HHHHHHHHHHHccc--c--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33445555556555 3 3466778889999999999999999999999999999988888888888888888889999
Q ss_pred HHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcccc
Q 010721 186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265 (503)
Q Consensus 186 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~ 265 (503)
+.|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|++.+++.++..+..++++
T Consensus 311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998888888888899999999999999999999999999999998888777 99999998888877766666555
Q ss_pred CC
Q 010721 266 ES 267 (503)
Q Consensus 266 ~~ 267 (503)
++
T Consensus 390 ~~ 391 (399)
T PRK05122 390 RR 391 (399)
T ss_pred cc
Confidence 43
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=132.93 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=132.9
Q ss_pred cccchhhHhHHHhhCCCCCc--hHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHH
Q 010721 104 GVMNGPIVSIAKELGFEGNP--ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEML 181 (503)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 181 (503)
....+.++.+.++.+.+.+. ...+.+.+++.++..++.++.|+++||+|||+.+..+.++.+++.+...+.++.+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T PRK09874 236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLG 315 (408)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34445566665554431121 2356677788888899999999999999999999999988888888888888889999
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHh
Q 010721 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (503)
Q Consensus 182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~ 261 (503)
+.+++.|++.+...+...+++.+..++++|++.+++++....+|..+||.+++.+.+..+ |++.|++.+++.++..+..
T Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888 9999999888888776655
Q ss_pred cc
Q 010721 262 QF 263 (503)
Q Consensus 262 ~~ 263 (503)
++
T Consensus 395 ~~ 396 (408)
T PRK09874 395 WN 396 (408)
T ss_pred HH
Confidence 44
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-13 Score=127.33 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=128.8
Q ss_pred hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 010721 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI 191 (503)
Q Consensus 112 ~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 191 (503)
.+.+++|. ++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..++..+.++.+.+++.+++.|++.
T Consensus 225 ~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 302 (375)
T TIGR00899 225 LIIHELGL--PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFI 302 (375)
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888 8888898888888888889999999999999999998888777776666667788888888999999999
Q ss_pred hhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccccC
Q 010721 192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266 (503)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~ 266 (503)
+...+....++.|..|++ ++.++++++....+|..++|.+++.+.+..+ |+..|++.++..++..+...+++|
T Consensus 303 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 303 GILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence 988888888999998765 6799999999999999999999999888777 999999988888877776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=128.70 Aligned_cols=166 Identities=12% Similarity=-0.027 Sum_probs=140.4
Q ss_pred HHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHH
Q 010721 91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170 (503)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 170 (503)
...+..++.......+....|.+.+|+|. ++.+.|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++
T Consensus 209 ~~l~~~~l~~~~~~~~~~~~~~~l~~~g~--s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~ 286 (382)
T TIGR00902 209 RFLAAVCLIQGAHAAYYGFSAIYWQAAGI--SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI 286 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555566777778888 8899999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHH-HHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 171 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
.+++++.+.+++.+++.|+..+...+....++.+. |+++|++..++++ ...++|.++|+.++|++.+..+ + ..|++
T Consensus 287 ~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~ 363 (382)
T TIGR00902 287 IGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVF 363 (382)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHH
Confidence 99999999999999999999999999999999998 8888999999986 5788999999999999999887 6 55666
Q ss_pred hHHHHHHHHHHh
Q 010721 250 ASLPGFILALGM 261 (503)
Q Consensus 250 ~~~~~~~~~~~~ 261 (503)
.++++++..++.
T Consensus 364 ~~~~~~~~~~~~ 375 (382)
T TIGR00902 364 MAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHH
Confidence 666666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=129.86 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=131.2
Q ss_pred cchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 010721 106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185 (503)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 185 (503)
.....+.+.++.+. +. .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (392)
T PRK12382 235 IGTFVSLYFASKGW--AM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAA 310 (392)
T ss_pred HHHHHHHHHHhcCC--ch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 33445555566665 43 456677788888999999999999999999999999999999888888888888888999
Q ss_pred HHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc
Q 010721 186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 186 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
+.|++.+...+...+.+.|.+|+++|++++++++....+|..++|.+.+.+.+..+ |++.|.+.+++.++..+..++
T Consensus 311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHh
Confidence 99999998888888899999999999999999999999999999999999998888 999999988887777655543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=131.41 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=133.1
Q ss_pred HHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh--cchHHHHH--HhHHHHH
Q 010721 91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQI--DTIPLIL 166 (503)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~~ 166 (503)
...+..++..+........+|.+.+++|. +..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.++
T Consensus 245 ~~~~~~~l~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l 322 (455)
T TIGR00892 245 VYLSGNVIMFLGFFAPIIFLVPYAKDKGV--DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGL 322 (455)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence 33334444444444444556777788888 888999999999999999999999999973 34433333 4444455
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Q 010721 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (503)
Q Consensus 167 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~ 246 (503)
+.++....++++.+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|.++||.+++.+.+..++|++.
T Consensus 323 ~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~ 402 (455)
T TIGR00892 323 THLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYI 402 (455)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchH
Confidence 56666778899999999999999999999999999999999999999999999999999999999999998876559999
Q ss_pred HHhhHHHHHHHHH
Q 010721 247 LYIASLPGFILAL 259 (503)
Q Consensus 247 ~~~~~~~~~~~~~ 259 (503)
|++.+++.++..+
T Consensus 403 f~~~~~~~li~~~ 415 (455)
T TIGR00892 403 FYASGSIVVSAGL 415 (455)
T ss_pred HHHhhHHHHHHHH
Confidence 9998877665544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=128.69 Aligned_cols=172 Identities=17% Similarity=0.081 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhhhhhcccchhhHh-HHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
++.+++..++...........+|. +++++|+ +..+.++..+.+.++..++.+++|+++||+|||+.++....+..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~--s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGF--SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 445555555555444444555665 4567888 8888999999999999999999999999999998877655444443
Q ss_pred HHH--HHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHH-HHHHHHHhhccCCC------
Q 010721 168 AII--SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAED------ 238 (503)
Q Consensus 168 ~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~~------ 238 (503)
..+ ....++.+.+.+++++.|++...........+.|.+|+++|+.+.|+.+....+ |..++|.+.|.+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~ 417 (467)
T PRK09556 338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT 417 (467)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence 322 233456667778888888754433333446777999999999999999988886 77999999998888
Q ss_pred ------CCchhHHHHHhhHHHHHHHHHHhcc
Q 010721 239 ------DPHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 239 ------~~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
..+ |+..|++..+..++..+..++
T Consensus 418 ~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 418 PIFGYTLTG-WAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred ccccccccC-hHHHHHHHHHHHHHHHHHHHH
Confidence 455 999999887777776555544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=125.69 Aligned_cols=172 Identities=11% Similarity=0.030 Sum_probs=137.0
Q ss_pred HHHHHHHhhhhhhcccchhhHhHH-HhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH
Q 010721 91 IASMSNFLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (503)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 169 (503)
.+.+..++.......+...+|.+. +++|+ +..+.+++.+.+.++..++.++.|+++||+|||+++.....+..+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 286 (394)
T PRK03699 209 FLAIAALLYILAQLTFISWVPEYAQKKFGM--SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 333444444343334445566665 66788 888899999999999999999999999999999999988887777777
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 170 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
+....++.+.+.+..++.|++.+..++...++..+..+++ ++...+.......+|..++|.+.+++.+..+ |+..+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~ 364 (394)
T PRK03699 287 LFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLT 364 (394)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhh
Confidence 7777788877778889999988888888888888877644 6778888888999999999999999998877 9999998
Q ss_pred hHHHHHHHHHHhccccC
Q 010721 250 ASLPGFILALGMQFTVE 266 (503)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (503)
.+++.++..+...+.++
T Consensus 365 ~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 365 ANGLYAVVFVMCILLGF 381 (394)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88877777665555443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-11 Score=118.66 Aligned_cols=341 Identities=16% Similarity=0.127 Sum_probs=204.0
Q ss_pred hhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhc-----chHHHHHHhHHHHHHHHHHHhh----hhHH
Q 010721 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQIDTIPLILGAIISAQA----HSLD 178 (503)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~----~~~~ 178 (503)
...+.+.+++|+ ++.+.....+...+... ..+++|.++|.+- ||+-++++.++..++.+..+.. .+..
T Consensus 11 ~~~~~l~~~l~l--s~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 11 AIYPFLKDDLGL--SPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 456788999999 88888888888888774 4788999999862 5555666777776666665553 3566
Q ss_pred HHHHHHHHHHhhhhhhchhhhhhhhhcCCC--CCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHH
Q 010721 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFI 256 (503)
Q Consensus 179 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~ 256 (503)
...++-++..+|.+.....+-+++.|...+ +.|+...+.......+|.+++..++|.+.+..+ +|+.|.+.+++..+
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLL 166 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHH
Confidence 777788889999999999999999999843 336778888888999999999999999998887 99999988777776
Q ss_pred HHHHhccccCC-hH---HH---HhcCChHH----HHHHHHHHc---CCcchHHHHHHHHHHHHhcCCCCcc--cch--hh
Q 010721 257 LALGMQFTVES-PR---WL---CKGGMLND----AKAVIANLW---GESEINKAIEEFQLVIKKDGSDLDS--QWS--EL 318 (503)
Q Consensus 257 ~~~~~~~~~~~-~~---~~---~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~ 318 (503)
..+..+++.|+ ++ .. ..++..+. .++..+.++ ..+...................... .|. ..
T Consensus 167 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~ 246 (433)
T PF03092_consen 167 MLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDA 246 (433)
T ss_pred HHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecc
Confidence 66555554442 11 00 00100000 111111111 1111111111001011111110001 111 11
Q ss_pred hccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHH-hcCCCCc-chhhHHHHH
Q 010721 319 LEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGA-TSLPLDE-DFSHNLSIL 396 (503)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 396 (503)
..-+++..... +....+..++.+++..+......+..-|+++.+..++..+..+.-... ......- -.+.+..+.
T Consensus 247 ~~gp~fs~~f~---~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lg 323 (433)
T PF03092_consen 247 LGGPHFSPSFY---GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALG 323 (433)
T ss_pred ccccccCHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEE
Confidence 11222333332 233455566667777777666666676777666655544433321111 0000000 001111222
Q ss_pred HHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010721 397 GTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 456 (503)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 456 (503)
-..+.-......+.|. ...++|+.|+..-|+.+++..++.++|..++..+...+.+..|
T Consensus 324 d~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 324 DTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2222222233333343 4567899999999999999999999999999999999988776
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=124.96 Aligned_cols=170 Identities=22% Similarity=0.162 Sum_probs=121.7
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchH--HHH------H
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR--TFQ------I 159 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~--~l~------~ 159 (503)
++...+..++............|.+ .+++|. +..+.+++.+...++..++.++.|+++||+|||+ ... .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGL--SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc--cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 3444455555555555555556655 456777 8888999999999999999999999999999996 111 1
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 160 DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
+.++..+........++.+..+...++.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 295 AGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT 373 (399)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence 111111111112222344444444555555555 7889999999999999999999999999999999999999999887
Q ss_pred CchhHHHHHhhHHHHHHHHHHh
Q 010721 240 PHWWRTMLYIASLPGFILALGM 261 (503)
Q Consensus 240 ~~~wr~~~~~~~~~~~~~~~~~ 261 (503)
.+.|+..|++.++..++..+..
T Consensus 374 ~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 374 TGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred CCchhHHHHHHHHHHHHHHHHH
Confidence 6558999988877776665544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=126.74 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=123.5
Q ss_pred HHHHHHHhhhhhhcccchhhHhHH-HhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH-
Q 010721 91 IASMSNFLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA- 168 (503)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~- 168 (503)
......+............+|.+. +++|. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 300 (394)
T TIGR00883 223 LGLGLVIATTTTFYLITTYLPTYLTQTLGL--SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 333334444444444445566655 67787 88889999999999999999999999999999998876554444333
Q ss_pred -HHHHh--hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhH-HHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 169 -IISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 169 -~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
+...+ .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++ ++.+..+|..++|.+++.+.+..+.|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~ 380 (394)
T TIGR00883 301 PLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWY 380 (394)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcch
Confidence 22222 25677777888999999999999999999999999999999998 456677899999999999988766588
Q ss_pred HHHHhhHHHHH
Q 010721 245 TMLYIASLPGF 255 (503)
Q Consensus 245 ~~~~~~~~~~~ 255 (503)
+.++...+..+
T Consensus 381 ~~~~~~~~~~l 391 (394)
T TIGR00883 381 AIGYYLAALAL 391 (394)
T ss_pred hHHHHHHHHHH
Confidence 87776665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=123.65 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=125.9
Q ss_pred chhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010721 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186 (503)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 186 (503)
...+|.+.++.|. +..+.+++.+.+.++..+++++.|++.||+|+|+++..+..+.+++.+... . ........++
T Consensus 220 ~~~lp~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l 294 (381)
T PRK03633 220 YGLMPLYLNHQGM--SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFI 294 (381)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHH
Confidence 3456777777787 888889999999999999999999999999999999988888777665443 2 2344557788
Q ss_pred HHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccc
Q 010721 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (503)
Q Consensus 187 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 264 (503)
.|++.....|...+++.|..|+++++...+.+..+.++|.++||.+++++.++.+ |++.|.+.+.+.++..+..++.
T Consensus 295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHhc
Confidence 8888888889999999999998888888888888999999999999999998888 9999999888777665555443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.7e-12 Score=121.00 Aligned_cols=168 Identities=15% Similarity=0.083 Sum_probs=126.9
Q ss_pred HHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHH-HHhHHHHHHHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-IDTIPLILGAII 170 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~ 170 (503)
..+..++............|.+.+++|. +..+.+++.+.+.++..++.++.|+++||+|||+.+. .+.+..+++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~ 304 (402)
T TIGR00897 227 GGMVRIINTIGLFGFAVFLPMFVAELGF--STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA 304 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 3333444444444445567888888888 7888899999999999999999999999999988764 333444444333
Q ss_pred HHh-----hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHH
Q 010721 171 SAQ-----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT 245 (503)
Q Consensus 171 ~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~ 245 (503)
..+ .++++.++++.++.|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+..+ |+.
T Consensus 305 l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~ 381 (402)
T TIGR00897 305 LYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIG 381 (402)
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHH
Confidence 332 24667777889999998887655 3456677655 579999999999999999999999999998887 999
Q ss_pred HHHhhHHHHHHHHHHhccc
Q 010721 246 MLYIASLPGFILALGMQFT 264 (503)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~ 264 (503)
.|++.+++.++..+..+|+
T Consensus 382 ~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 382 VVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999888887776666554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-12 Score=125.08 Aligned_cols=159 Identities=15% Similarity=0.049 Sum_probs=135.1
Q ss_pred chhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 010721 107 NGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185 (503)
Q Consensus 107 ~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 185 (503)
...+|.+.++ +|. +..+.|++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++++.+.++.+
T Consensus 243 ~~~~p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T PRK10489 243 RVLYPALADEVWQM--GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA 320 (417)
T ss_pred HHhhHHHHHhccCC--ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3455666666 888 8888999999999999999999999999988888888888888888888888888888888999
Q ss_pred HHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHH-HHHhccc
Q 010721 186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL-ALGMQFT 264 (503)
Q Consensus 186 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~-~~~~~~~ 264 (503)
+.|++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.+.+.+..+ ++..+++.++..++. .+....+
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999988888888899999999999999999999999999999999999998877 888888766665554 4444556
Q ss_pred cCCh
Q 010721 265 VESP 268 (503)
Q Consensus 265 ~~~~ 268 (503)
++.+
T Consensus 400 ~~~~ 403 (417)
T PRK10489 400 GELR 403 (417)
T ss_pred cccc
Confidence 6543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-12 Score=121.00 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=128.3
Q ss_pred hhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhh-h
Q 010721 98 LFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH-S 176 (503)
Q Consensus 98 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~ 176 (503)
+...........+|.+.+++|. +..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +
T Consensus 216 ~~~~~~~~~~~~lp~~l~~~g~--s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (393)
T PRK09705 216 LINGGYASLIAWLPAFYIEIGA--SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ 293 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch
Confidence 3333433444556677677888 888899999999999999999999999999999999998888777776655333 2
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhhhhhhcCC-CCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHH
Q 010721 177 LDEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF 255 (503)
Q Consensus 177 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~ 255 (503)
...+ .-++.|++.+...+.......+.++ ++++++..++.+....++..++|.+.+++.+..++|...|.+.++.++
T Consensus 294 ~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~ 371 (393)
T PRK09705 294 LPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVV 371 (393)
T ss_pred HHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 2222 2346788888888877777777775 567899999999999999999999999999887668888888777776
Q ss_pred HHHHHh-ccccCCh
Q 010721 256 ILALGM-QFTVESP 268 (503)
Q Consensus 256 ~~~~~~-~~~~~~~ 268 (503)
+..+.. .+.||++
T Consensus 372 ~~~~~~~~~~~~~~ 385 (393)
T PRK09705 372 GLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHhccccc
Confidence 665554 4456653
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=119.37 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=121.6
Q ss_pred hHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH-HHHHhhhhHHHHHHHHHHHH
Q 010721 110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA-IISAQAHSLDEMLWGRFLVG 188 (503)
Q Consensus 110 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G 188 (503)
.+.+.+++|. +..+.+++.+.+.++..+++++.|+++||+|||+.+ .+..+..++. ++....++.+.++++.++.|
T Consensus 229 ~~~l~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g 305 (390)
T PRK03545 229 EPFVQQVAGL--SENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWG 305 (390)
T ss_pred HHHHHHhcCC--CccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 3455666787 788899999999999999999999999999988754 4444444443 33455678888888999999
Q ss_pred hhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc
Q 010721 189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
++.+...+.....+.+..| ++|++++++++....+|..+||++++.+.+..+ ++..|++.+++.++..+..++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHH
Confidence 9988777778888888876 568999999999999999999999999999988 999999988888776655544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=123.25 Aligned_cols=139 Identities=21% Similarity=0.171 Sum_probs=114.8
Q ss_pred hhH-hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH-HHHhhhhHHHHHHHHHH
Q 010721 109 PIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI-ISAQAHSLDEMLWGRFL 186 (503)
Q Consensus 109 ~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l 186 (503)
.+| .+.+++|. +..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.++..+ +....++.+.+.++.++
T Consensus 260 ~~~~~~~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (405)
T TIGR00891 260 LLPTYLKADLGL--SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF 337 (405)
T ss_pred hhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 344 44567788 888999999999999999999999999999999999888776644333 33344667777777788
Q ss_pred HHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 187 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
.|++.+...+....++.|.+|+++|++++|+.+....+|..++|++.+.+.+..+.|+..+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 888777788888899999999999999999999999999999999999998876656666554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-12 Score=122.04 Aligned_cols=154 Identities=16% Similarity=0.090 Sum_probs=115.3
Q ss_pred hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHh---h-hhHHHHHHHHHHH
Q 010721 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ---A-HSLDEMLWGRFLV 187 (503)
Q Consensus 112 ~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~ 187 (503)
.+.+++|. +......+..+..+...++.++.|+++||+|||++++.+.++..++.+.... . ++.+.++++.++.
T Consensus 276 y~~~~~g~--s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (438)
T PRK09952 276 YSTQNLGL--PRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA 353 (438)
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44567787 6655555566666777888999999999999999998887766555443322 1 2344555567777
Q ss_pred HhhhhhhchhhhhhhhhcCCCCCccchhhHH-HHHHHHHHHHHHHhhccCCCCC-chhHHHHHhhHHHHHHHHHHhcccc
Q 010721 188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDP-HWWRTMLYIASLPGFILALGMQFTV 265 (503)
Q Consensus 188 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~~~~~l~~~~-~~wr~~~~~~~~~~~~~~~~~~~~~ 265 (503)
|++.+...+...+++.|.+|.+.|+.+.++. ..+..+|..++|.+.+++.+.. ++|+..+...++..++..+..+.++
T Consensus 354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 8888888888899999999999998888885 4455689999999999887643 2388888888877777776666666
Q ss_pred CC
Q 010721 266 ES 267 (503)
Q Consensus 266 ~~ 267 (503)
|+
T Consensus 434 ~~ 435 (438)
T PRK09952 434 DN 435 (438)
T ss_pred cc
Confidence 53
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-12 Score=124.57 Aligned_cols=146 Identities=20% Similarity=0.097 Sum_probs=116.0
Q ss_pred cchhhHhHH-HhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh--hhHHHHHH
Q 010721 106 MNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--HSLDEMLW 182 (503)
Q Consensus 106 ~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~ 182 (503)
....+|.+. +++|. +..+.+++.+.+.++..++.++.|+++||+|||+++.++.++..+..++.... .+.+.+.+
T Consensus 294 ~~~~lp~~l~~~~g~--~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (496)
T PRK03893 294 IQALLPTYLKTDLGY--DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL 371 (496)
T ss_pred HHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345567666 58888 88999999999999999999999999999999999998877766665544433 34444555
Q ss_pred HHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHH
Q 010721 183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPG 254 (503)
Q Consensus 183 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~ 254 (503)
..++.++......+....++.|.+|+++|++++++.+....+|..+||++++.+.+..+ |+..+...+...
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~ 442 (496)
T PRK03893 372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSL 442 (496)
T ss_pred HHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence 55655544444556777889999999999999999999999999999999999999888 888876654433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.3e-12 Score=125.01 Aligned_cols=178 Identities=13% Similarity=-0.004 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~ 166 (503)
..++...+..+.............|.+.+++|. +..+.++......++..++.++.|+++||+|||+.+.++.++.++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 361 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV--STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI 361 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 334444444444444445555667888888898 677788999999999999999999999999999999999888888
Q ss_pred HHHHHHhh-----h------hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhcc
Q 010721 167 GAIISAQA-----H------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP 235 (503)
Q Consensus 167 ~~~~~~~~-----~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 235 (503)
+.++.++. + +...+....++.+.......+....++.|.+|+++|++++++.+....+|.++++.+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~ 441 (481)
T TIGR00879 362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT 441 (481)
T ss_pred HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776621 1 333333333333333333456667788999999999999999999999999999999998
Q ss_pred CCCCCchhHHHHHhhHHHHHHHHHHhc-cccCC
Q 010721 236 AEDDPHWWRTMLYIASLPGFILALGMQ-FTVES 267 (503)
Q Consensus 236 l~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~~~ 267 (503)
+.+..+ |++.|++.++++++..+..+ +.||+
T Consensus 442 ~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 442 MLESIG-VGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred HHHhcC-ccceehhHHHHHHHHHHHHheecccC
Confidence 887777 99999998888777766554 45654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=119.05 Aligned_cols=150 Identities=13% Similarity=0.029 Sum_probs=125.0
Q ss_pred ccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHH
Q 010721 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR 184 (503)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 184 (503)
.+....|.+.+|.|. +..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..
T Consensus 223 ~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK11128 223 AYYGFSAIYWQAAGY--SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQ 300 (382)
T ss_pred hHHHHHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 334445666677888 888899999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHH-HHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHH
Q 010721 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL 259 (503)
Q Consensus 185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~ 259 (503)
++.|++.+...+....++.+. +++++++..++++ ....+|..+||.++|.+.+..+ + ..|+..+++.++.++
T Consensus 301 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 301 ILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence 999999999999999888887 5555788888875 6677888999999999998887 6 456666655554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=103.32 Aligned_cols=245 Identities=14% Similarity=0.056 Sum_probs=145.7
Q ss_pred cccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHH
Q 010721 104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183 (503)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (503)
...+|.+-.+-+++|+ +..|++.+....+...++..++.|.++||+|||+.-++.+++.+++++. -..++++.++++
T Consensus 51 WLQGpY~Y~LY~~yg~--~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~G 127 (354)
T PF05631_consen 51 WLQGPYLYALYESYGF--SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLG 127 (354)
T ss_pred HhhcchhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHH
Confidence 3444544344467899 9999999999999999999999999999999999999999999999964 455899999999
Q ss_pred HHHHHhhhhhhchhhhhhh-hhcCC----CCCccchhhHHH-HHHHHHHHHHHHhhccCCCCCc-hhHHHHHhhHHHHHH
Q 010721 184 RFLVGLGIGVNTVLVPIYI-SEVAP----TKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFI 256 (503)
Q Consensus 184 r~l~G~~~~~~~~~~~~~i-~~~~~----~~~r~~~~~~~~-~~~~~G~~ig~~~~~~l~~~~~-~wr~~~~~~~~~~~~ 256 (503)
|++.|++.+..+.+--++. .|.-. ++..+..++... ..+++-.+++.+++.++.+..+ +-..+|....++.++
T Consensus 128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~ 207 (354)
T PF05631_consen 128 RVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAV 207 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 9999999999988887754 45422 221222222222 2233334555555555554433 147788887777777
Q ss_pred HHHHhcc-ccCChHHHHhcC-ChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCccccchhhhHHH
Q 010721 257 LALGMQF-TVESPRWLCKGG-MLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGAL 334 (503)
Q Consensus 257 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (503)
..+++.. .+|......++. ..+.-++..+.+.++++....- ................|.+.+........ -+.
T Consensus 208 ~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG-~~qslFE~smy~FVflWtPaL~~~~~~~P----~Gl 282 (354)
T PF05631_consen 208 AAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLG-LIQSLFEGSMYLFVFLWTPALDPDDEELP----LGL 282 (354)
T ss_pred HHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHH-HHHHHHHHHHHHheeeeeceecCCCCCCC----chH
Confidence 6655543 556432111111 1122223333344333322111 11111111111112334444442211111 235
Q ss_pred HHHHHHHHHHHHHHhHHHhhcc
Q 010721 335 ASLLVGVTNFAGALCASYLMDK 356 (503)
Q Consensus 335 ~~~~~~~~~~~~~~~~g~l~d~ 356 (503)
+.+.+.+..++|+.+..++..+
T Consensus 283 IFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 283 IFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 6677778888888888665543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=119.40 Aligned_cols=160 Identities=17% Similarity=0.073 Sum_probs=117.6
Q ss_pred ccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhh--hH-H-HH
Q 010721 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SL-D-EM 180 (503)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~-~-~l 180 (503)
......|.+.+++|. +....++......++..++.++.|+++||+|||++++.+.++.+++.++.+... +. + ..
T Consensus 289 ~~~~~~p~i~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~ 366 (479)
T PRK10077 289 VVLYYAPEIFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 366 (479)
T ss_pred HHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence 334456888888888 665566777778888999999999999999999999999999988887776432 21 1 22
Q ss_pred HHHHHHHHhhhhh-hchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhc------cCCCCCchhHHHHHhhHHH
Q 010721 181 LWGRFLVGLGIGV-NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI------PAEDDPHWWRTMLYIASLP 253 (503)
Q Consensus 181 ~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~------~l~~~~~~wr~~~~~~~~~ 253 (503)
..+-++.+++.+. ..+....++.|.+|+++|+.++++.+....+|.++++.+.+ ++.+..+ |++.|++.+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~ 445 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCM 445 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHH
Confidence 2344444444443 33677889999999999999999999999888888865544 3344555 88888887777
Q ss_pred HHHHHHHhc-cccCC
Q 010721 254 GFILALGMQ-FTVES 267 (503)
Q Consensus 254 ~~~~~~~~~-~~~~~ 267 (503)
+++..++.+ +.||+
T Consensus 446 ~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 446 GVLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHHhccccC
Confidence 766665554 45665
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.8e-12 Score=120.76 Aligned_cols=138 Identities=21% Similarity=0.180 Sum_probs=111.7
Q ss_pred HhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhh
Q 010721 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS 176 (503)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~ 176 (503)
++............|.+.+++|. +..+.++..+...++..++.++.|+++||+|||+.+....+...+..++....++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (398)
T TIGR00895 260 FMLLVGVYFLTNWLPKLMVELGF--SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFS 337 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333344444556788888888 8888999999999999999999999999999995544444433333333333567
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccC
Q 010721 177 LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA 236 (503)
Q Consensus 177 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l 236 (503)
.+.++++.++.|++.+...+...+++.|.+|+++|++++|+......+|..+||.+++++
T Consensus 338 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 778888899999999999999999999999999999999999999999999999998875
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-11 Score=115.99 Aligned_cols=179 Identities=16% Similarity=0.087 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHhhhhhhccc-chhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcch--HHHHHHhHH
Q 010721 87 PHVLIASMSNFLFGYHIGVM-NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQIDTIP 163 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~ 163 (503)
+.+....++.++..-..+.+ ......-.+++|+ +..+...+.-+..+..++|++++|++.||+|.| +++.+++++
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~--s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGM--STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL 358 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 33555555555443333333 3334455669999 888888888899999999999999999999999 899998888
Q ss_pred HHHHHHHHHh--------hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhcc
Q 010721 164 LILGAIISAQ--------AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP 235 (503)
Q Consensus 164 ~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 235 (503)
+.+..+...+ .++-+.+.+.-++.|++.|..++...++.++..|+++.+..+|++....-....+||++.+.
T Consensus 359 ~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~ 438 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL 438 (477)
T ss_pred HHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8666666655 67888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHhhHHHHHHHHHHhccccCC
Q 010721 236 AEDDPHWWRTMLYIASLPGFILALGMQFTVES 267 (503)
Q Consensus 236 l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~ 267 (503)
+.+..+.-|+.++...++.++.+++.++++.+
T Consensus 439 i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 439 ITDATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 98887768999988888888888777776654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=121.31 Aligned_cols=159 Identities=21% Similarity=0.174 Sum_probs=138.9
Q ss_pred hhhhcccchhhHhHH-HhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHH
Q 010721 100 GYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178 (503)
Q Consensus 100 ~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 178 (503)
++....+...+|.+. +++|. ++...|++.+++.+|..+|.++.+++.+|+++++.+..+.++++++.+..+++++.+
T Consensus 231 ~l~~~a~~aLlPl~a~~~l~~--~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~ 308 (524)
T PF05977_consen 231 NLFASAVWALLPLFARDVLGG--GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFW 308 (524)
T ss_pred HHhhhHHHHhhhHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHH
Confidence 333344445677765 55677 888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHH
Q 010721 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258 (503)
Q Consensus 179 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~ 258 (503)
..+++-++.|++.....+...+.+.+..|++.||++++++++....+..+|.++.|.+.+..+ -+..+.+.++..++..
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888 8888887776555554
Q ss_pred HHh
Q 010721 259 LGM 261 (503)
Q Consensus 259 ~~~ 261 (503)
++.
T Consensus 388 ~~~ 390 (524)
T PF05977_consen 388 LIA 390 (524)
T ss_pred HHH
Confidence 443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-11 Score=118.71 Aligned_cols=146 Identities=15% Similarity=0.104 Sum_probs=116.6
Q ss_pred HHHHHhhhhhhcccchhhHhHHH-hhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH
Q 010721 93 SMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (503)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (503)
....++............|.+.+ .+|. ++.+.+++...+.++..++.++.|++.||+|||+++..+.++.+++.++.
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 344 (471)
T PRK10504 267 LAGSFAGRIGSGMLPFMTPVFLQIGLGF--SPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLF 344 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 33334444444444555676665 4677 88889999999999999999999999999999999999999888887776
Q ss_pred Hhh---hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 172 AQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 172 ~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
.+. ++.+.+.+.-++.|++.+...+....++.+..|+++++.++++.+....+|..+|+.+++.+.+..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 345 MLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 653 344445566788899999889999999999999999999999999999999999999988765443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=118.94 Aligned_cols=175 Identities=19% Similarity=0.171 Sum_probs=158.0
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhc--chHHHHHHhHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG--CRRTFQIDTIPLIL 166 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~ 166 (503)
.+...+...+..+...+....+|.+.++.+. ++.+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.++
T Consensus 300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~--~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGL--SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 5666666677777777777888999999999 9999999999999999999999999999988 45667778888999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Q 010721 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (503)
Q Consensus 167 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~ 246 (503)
+.+.+.+.++++.+++.-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||++++.+.+..+.|...
T Consensus 378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~ 457 (509)
T KOG2504|consen 378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA 457 (509)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999888779999
Q ss_pred HHhhHHHHHHHHHHhcccc
Q 010721 247 LYIASLPGFILALGMQFTV 265 (503)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~ 265 (503)
|+..++..++..+.+++.+
T Consensus 458 f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 458 FYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhhcChHHHHHHHHHHHhH
Confidence 9999999888887777766
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-11 Score=115.53 Aligned_cols=139 Identities=13% Similarity=0.061 Sum_probs=120.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 201 (503)
+....|++.++..+...++.++.|++.||+|+|+.+.++.++.+++..+...+++.+.+++++++.|++.+........+
T Consensus 252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 331 (396)
T TIGR00882 252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY 331 (396)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667889999999999999999999999999999999999999988887888999999999999999987776677777
Q ss_pred hhhcCCCCCccchhhH-HHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHh
Q 010721 202 ISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (503)
Q Consensus 202 i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~ 261 (503)
+.+..+++.++...+. ++....+|.++++++++++.+..| |+..|.+.+++.++..+..
T Consensus 332 ~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 332 ITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence 8888888878777766 678899999999999999999887 9999999888877665543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-12 Score=119.00 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=117.1
Q ss_pred hhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhh-HHHHHHHHH
Q 010721 108 GPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS-LDEMLWGRF 185 (503)
Q Consensus 108 ~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~ 185 (503)
...|.+.++ +|. +..+.+++.+.+.++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ ++.++++.+
T Consensus 232 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 232 ALFPYVQSKYLGR--GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HHhHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 456676665 787 8888999999999999999999999999999999999988888888888887774 888889999
Q ss_pred HHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 186 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
+.|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+++.+.+.
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=118.27 Aligned_cols=171 Identities=20% Similarity=0.160 Sum_probs=115.0
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHH-HhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh--cch-HHHHH---Hh
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCR-RTFQI---DT 161 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr-~~l~~---~~ 161 (503)
++.+.+..++...........+|.+. +++|+ +..+.++..+.+.++..++.++.|+++||+ ++| +.... +.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~--s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGV--DLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 33334444444444444444556555 66788 888899999999999999999999999999 333 32222 22
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc
Q 010721 162 IPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (503)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 241 (503)
++..+...... ..+...+.+..+..|++...........+.|.+|+++|++++|+.+....+|..++|.+.+++.+..+
T Consensus 323 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g 401 (434)
T PRK11663 323 LLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH 401 (434)
T ss_pred HHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc
Confidence 21211111111 23333344444555554332223334567899999999999999999999999999999999998888
Q ss_pred hhHHHHHhhHHHHHHHHHHhcc
Q 010721 242 WWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
|+..|++.++++++..+..++
T Consensus 402 -~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 402 -WTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred -cHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888777665544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=119.64 Aligned_cols=161 Identities=17% Similarity=0.082 Sum_probs=108.5
Q ss_pred hhhHhHHHhhCCCCCchH---------HHH-HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhh-
Q 010721 108 GPIVSIAKELGFEGNPIL---------EGL-VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS- 176 (503)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~---------~g~-~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~- 176 (503)
...|.+.++.|.+.+... ... ...+..++..++.++.++++||+|||++++++..+.+++.++.++..+
T Consensus 309 ~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~ 388 (502)
T TIGR00887 309 LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH 388 (502)
T ss_pred cccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777788887322110 011 233445566678899999999999999999988887777666654321
Q ss_pred ---HHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC---------chhH
Q 010721 177 ---LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------HWWR 244 (503)
Q Consensus 177 ---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~---------~~wr 244 (503)
...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.++++.+.+.+.+.. .++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 468 (502)
T TIGR00887 389 LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMG 468 (502)
T ss_pred cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccch
Confidence 1111111122222222344566677899999999999999999999999999999998887632 1145
Q ss_pred HHHHhhHHHHHHHHHHhccccCCh
Q 010721 245 TMLYIASLPGFILALGMQFTVESP 268 (503)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~ 268 (503)
..|++.+++.++..+..+++||+.
T Consensus 469 ~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 469 HVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHHHheEeccCC
Confidence 677777777776666666788864
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-11 Score=116.81 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=121.8
Q ss_pred hHhHHHhhCCCCCchHHHHHHH-HHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH---Hhh-hhHHHHHHHH
Q 010721 110 IVSIAKELGFEGNPILEGLVVS-IFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---AQA-HSLDEMLWGR 184 (503)
Q Consensus 110 ~~~i~~~~~~~~~~~~~g~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r 184 (503)
.|.+.+++|. +..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.++..++. +.. ++.+.+.+.-
T Consensus 246 ~~~l~~~~G~--s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 246 TTFLIRGVGF--DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3455667888 8999999874 6678999999999999999999998877666555544332 233 4555555566
Q ss_pred HHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccc
Q 010721 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (503)
Q Consensus 185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 264 (503)
++..++.|...+...++..+..+++.+++..++.+....+|.++++.+.|.+.+..| |+..|.+.++++++.++...++
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666667778889999999999999999999999999988889999988877 9999999888888877666665
Q ss_pred cCC
Q 010721 265 VES 267 (503)
Q Consensus 265 ~~~ 267 (503)
+++
T Consensus 403 ~~~ 405 (491)
T PRK11010 403 RQT 405 (491)
T ss_pred Hhc
Confidence 543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=109.09 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=134.0
Q ss_pred HhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh-h
Q 010721 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-H 175 (503)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~ 175 (503)
+...-....++..-|.+++..|+ +...++++.-.|.++..+|.++.|+++|| +.|+.+.....+.++..+...+. +
T Consensus 222 l~~~g~F~~ftYi~P~L~~v~g~--s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~ 298 (394)
T COG2814 222 LFMTGHFALYTYIRPFLESVAGF--SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGA 298 (394)
T ss_pred HHHcchhhhHHhHHHHHHHccCC--CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcc
Confidence 33344445566677899999999 88999999999999999999999999999 99999999888877777776655 5
Q ss_pred hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHH
Q 010721 176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF 255 (503)
Q Consensus 176 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~ 255 (503)
+.+..++.-++.|+............+++ ..++.++.+.+++...+++|..+|..+++.+.++.+ +....++.+++.+
T Consensus 299 ~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~ 376 (394)
T COG2814 299 SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLL 376 (394)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHH
Confidence 56666667777888877776666666777 335669999999999999999999999999999977 9999999999888
Q ss_pred HHHHHhcc
Q 010721 256 ILALGMQF 263 (503)
Q Consensus 256 ~~~~~~~~ 263 (503)
+..++.+.
T Consensus 377 ~a~~~~~~ 384 (394)
T COG2814 377 LALLLALL 384 (394)
T ss_pred HHHHHHHH
Confidence 88766655
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=100.12 Aligned_cols=160 Identities=17% Similarity=0.094 Sum_probs=126.3
Q ss_pred cccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh-------hh
Q 010721 104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-------HS 176 (503)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~ 176 (503)
..++..-|++++.+|+ |..|...+.+.-.+|..+ .++.|.+.|++|++.++++|.+...+|..+...+ .+
T Consensus 19 Y~Fs~yS~~Lk~~l~~--sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~ 95 (250)
T PF06813_consen 19 YTFSAYSPQLKSRLGY--SQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP 95 (250)
T ss_pred cchhhhhHHHHHHhCC--CHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence 3445556899999999 999999999999999987 5889999999999999999999999998877654 47
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHH
Q 010721 177 LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFI 256 (503)
Q Consensus 177 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~ 256 (503)
+|.+.+..++.|.+.+....++.....+.||+ +||.+.|+.-...+++..+-..+...+.+... -...++......++
T Consensus 96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~-~~fll~la~~~~~v 173 (250)
T PF06813_consen 96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP-SSFLLFLAVLPAVV 173 (250)
T ss_pred hHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHH
Confidence 88888889999999888778877777788985 59999999999999988877766655555443 45555555555555
Q ss_pred HHHHhccccCCh
Q 010721 257 LALGMQFTVESP 268 (503)
Q Consensus 257 ~~~~~~~~~~~~ 268 (503)
.++..+++++.|
T Consensus 174 ~l~~~~~vr~~~ 185 (250)
T PF06813_consen 174 CLVAMFFVRPVP 185 (250)
T ss_pred HHHHhhheeccC
Confidence 555555554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=113.71 Aligned_cols=137 Identities=16% Similarity=0.041 Sum_probs=104.0
Q ss_pred chhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhh--hHHHHHHHH
Q 010721 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGR 184 (503)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r 184 (503)
...+|.+.++.|. +..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++.++..+.....+ +...+.+..
T Consensus 251 ~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (426)
T PRK12307 251 FGLLPTYLAGEGF--DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL 328 (426)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 3456777777777 888889999999999999999999999999999999988887776665554433 222222222
Q ss_pred HHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Q 010721 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (503)
Q Consensus 185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~ 246 (503)
+..+++.....+....++.|.+|+++|++++|+......+|..++|.+.+++.+..+ +...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~ 389 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA 389 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence 223333333345566788999999999999999999999999999999999988776 5543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-11 Score=116.66 Aligned_cols=172 Identities=13% Similarity=0.049 Sum_probs=115.1
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHH-hhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh--cchHHH-HHHhHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTF-QIDTIPL 164 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l-~~~~~~~ 164 (503)
++...+..++...........+|.+.+ ++|. +..+.++..+.+.++..++.++.|+++||+ |||+.. +....+.
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 334444444433333334456666655 4688 777889999999999999999999999999 555433 2223333
Q ss_pred HHHHHHHHh--hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHH-HHHHhhccCCCCCc
Q 010721 165 ILGAIISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII-TSLFLGIPAEDDPH 241 (503)
Q Consensus 165 ~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-ig~~~~~~l~~~~~ 241 (503)
.++.++..+ ..+.+..+++.++.|.+..........+..|.+|+++|++++|+.+....+|.. ++|.+.+.+.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 333 TIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence 333333222 234555555556666544333333445678999999999999999888888765 57999999988888
Q ss_pred hhHHHHHhhHHHHHHHHHHhcc
Q 010721 242 WWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
|+..|++.++.+++.++....
T Consensus 413 -~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 413 -WDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred -chHHHHHHHHHHHHHHHHHHH
Confidence 999999888777766555543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=109.88 Aligned_cols=137 Identities=18% Similarity=0.081 Sum_probs=100.0
Q ss_pred hcccchhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH-HH---HhhhhH
Q 010721 103 IGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI-IS---AQAHSL 177 (503)
Q Consensus 103 ~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~---~~~~~~ 177 (503)
...+....|.+.++ +|. +..+.++....+.++..++.+++|+++||+|||++++.+.++..+... .. ...+++
T Consensus 254 ~~~~~~~~p~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (434)
T PRK15075 254 FYLITVYTPTFGKTVLHL--SAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSF 331 (434)
T ss_pred HHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 33444556666554 788 777888888899999999999999999999999998876554433221 11 122444
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHH-HHHHHHHHHHHhhccCCCCCc
Q 010721 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQV-GTCLGIITSLFLGIPAEDDPH 241 (503)
Q Consensus 178 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~ig~~~~~~l~~~~~ 241 (503)
..+.+..++.|++.+...+....++.|.+|+++|+.++++.+. +..++..++|.+.+++.+..+
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 332 ARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 4455556666777777777777889999999999999999644 444557789999988887766
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-10 Score=110.31 Aligned_cols=149 Identities=14% Similarity=-0.010 Sum_probs=115.5
Q ss_pred hhHhHHHhhCCCCCchHHHHHHHHHH-HHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHh------hhhHHHHH
Q 010721 109 PIVSIAKELGFEGNPILEGLVVSIFI-AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ------AHSLDEML 181 (503)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~g~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~ 181 (503)
..+.+.+|.|. +..++|++..... ....++.++.|++.||+|+|+.+..+.++.++..+.... .++...+.
T Consensus 230 ~~~~~l~~~G~--s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
T TIGR02718 230 LSKLYLVDAGW--PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW 307 (390)
T ss_pred HhhHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence 45566677888 8899999988876 466778899999999999999998877766443333221 12334445
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhcCCC-CCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHH
Q 010721 182 WGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260 (503)
Q Consensus 182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~ 260 (503)
....+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.+++.+.+..+ |+..|++.+++.++..+.
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHH
Confidence 556667777788888888887777776 788999999999999999999999999988777 999999887777665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=104.69 Aligned_cols=178 Identities=16% Similarity=0.085 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~ 166 (503)
...+++.-..+.++.+.. +......-..++|+ +..+..++.-.-.+..++|++++|+|.||+|.|+++.++.++..+
T Consensus 254 i~~FLiA~~~~~DGv~ti-l~~~~~fg~~~~gl--s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~ 330 (438)
T COG2270 254 LVLFLIARFFYIDGVNTI-LAMGGVFGAADLGL--SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI 330 (438)
T ss_pred hHHHHHHHHHHHhhHHHH-HHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence 334444444455554432 22222333459999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Q 010721 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (503)
Q Consensus 167 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~ 246 (503)
.++..-+...-..+.++-.+.|.+.|..+..+.++..+..|+++-++.+|++....-.+..+||.+-+.+.+..+.-|..
T Consensus 331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 99988888777788888899999999999999999999999999999999999999999999999999988877768888
Q ss_pred HHhhHHHHHHHHHHhccccCC
Q 010721 247 LYIASLPGFILALGMQFTVES 267 (503)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (503)
+....++..+..++.+++|++
T Consensus 411 ~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 411 VLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhhHhhEEeecCC
Confidence 888888888777877777764
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=110.56 Aligned_cols=157 Identities=11% Similarity=-0.007 Sum_probs=101.6
Q ss_pred chhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHH--h--hhhHHHHH
Q 010721 107 NGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA--Q--AHSLDEML 181 (503)
Q Consensus 107 ~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~ 181 (503)
...+|.+ .+++|. +..+.++..++..++..+++++.|+++||+|||+++.++.++.++..+... . .++....+
T Consensus 263 ~~~lp~~l~~~~g~--s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (432)
T PRK10406 263 TTYMQKYLVNTAGM--HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAF 340 (432)
T ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3445554 456787 777888888888888899999999999999999988776655443332221 1 12333222
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHH-HHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHH
Q 010721 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260 (503)
Q Consensus 182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~ 260 (503)
..-++.+++.+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+.. .+.|...+++.++..++..+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 341 GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHH
Confidence 2223333334444455667889999999999999998765443 34447777775533 343666666666666666555
Q ss_pred hccccC
Q 010721 261 MQFTVE 266 (503)
Q Consensus 261 ~~~~~~ 266 (503)
.+++++
T Consensus 420 ~~~l~~ 425 (432)
T PRK10406 420 SLMLHR 425 (432)
T ss_pred HHHhhh
Confidence 555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=116.72 Aligned_cols=137 Identities=18% Similarity=0.071 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhH--HHHHHHHHHHHhhhhhhchhhhhhhhhcC
Q 010721 129 VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL--DEMLWGRFLVGLGIGVNTVLVPIYISEVA 206 (503)
Q Consensus 129 ~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 206 (503)
...+..+...++.++.+++.||+|||+++.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445566777889999999999999999999999999988888877544 45556667777888888888999999999
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccccCCh
Q 010721 207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268 (503)
Q Consensus 207 ~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~ 268 (503)
|++.|+.++|+.+....+|.+++|.+.+ +.+ .+ +...+++.++..++..+..+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999988 432 33 67788888888877777777888863
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=110.83 Aligned_cols=165 Identities=14% Similarity=0.097 Sum_probs=112.2
Q ss_pred HHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHH-HHHHhHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT-FQIDTIPLILGA 168 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~ 168 (503)
+...+..++.......+...+|.+.++++.+.+..+.++..+...++..++.++.|+++||++||+. +....++.+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~ 324 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW 324 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence 3444444444444555566778888876433377888999999999999999999999999997774 444444444443
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHH
Q 010721 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (503)
Q Consensus 169 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~ 248 (503)
++.....+....+++-++.+++.....+.......|.+|+++|+.++|+.+....+|.+++|.+.+.+.+..++|++.|+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~ 404 (412)
T TIGR02332 325 LLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLW 404 (412)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHH
Confidence 33222223222222222333333333344445557788999999999999999999999999999999887766999988
Q ss_pred hhHHHH
Q 010721 249 IASLPG 254 (503)
Q Consensus 249 ~~~~~~ 254 (503)
+.++..
T Consensus 405 ~~~~~~ 410 (412)
T TIGR02332 405 FVAALL 410 (412)
T ss_pred HHHHHH
Confidence 766544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=112.53 Aligned_cols=119 Identities=23% Similarity=0.191 Sum_probs=101.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhhhhchhhhh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-HSLDEMLWGRFLVGLGIGVNTVLVPI 200 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 200 (503)
+..+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999999999998888888777665 46677778889999999999999999
Q ss_pred hhhhcCC-------CCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 201 YISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 201 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
+++|..+ ++++|.+.++++....+|..+++.+.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998865 455789999999999999999999888776543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=92.93 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccc
Q 010721 338 LVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVI 417 (503)
Q Consensus 338 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (503)
...++.+++.++.+++.||++||+.+..+.....++.+.+.... + ........+..+.......+....+.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--------N-ITVLIIARFLQGFGAAFALVAGAALI 76 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--------c-HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45677888999999999999999999888877777766655421 1 12222222222222222345667788
Q ss_pred cccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccC
Q 010721 418 PELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 418 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (503)
.|.+|+++|+++.++.+....++..++|.+.+.+.+..+++..+.+.+.+.++..+..++..+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999998888888888877777776666555443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=114.06 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=105.6
Q ss_pred chhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH---HHHHHHHhh--hhHHHH
Q 010721 107 NGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI---LGAIISAQA--HSLDEM 180 (503)
Q Consensus 107 ~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~--~~~~~l 180 (503)
...+|.+.++ .|. +..+.++..+.+.++..++.++.|+++||+|+++....+..+.. ++.+..... .+.+..
T Consensus 271 ~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T TIGR00712 271 LDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD 348 (438)
T ss_pred HHhHHHHHHHccCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 3455666554 577 88888999999999999999999999999975432223322221 122222221 233444
Q ss_pred HHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHH-HHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHH
Q 010721 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL 259 (503)
Q Consensus 181 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~ 259 (503)
.+.-++.|++.............|.+|+++|+.+.|+.+....+| .+++|.+.+.+.+..+ |...|++..+..++..+
T Consensus 349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~ 427 (438)
T TIGR00712 349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVI 427 (438)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 444555555433222222346789999999999999998877776 5789999999988877 99999887666655554
Q ss_pred Hh-ccccCC
Q 010721 260 GM-QFTVES 267 (503)
Q Consensus 260 ~~-~~~~~~ 267 (503)
.. .+++|+
T Consensus 428 ~~~~~~~~~ 436 (438)
T TIGR00712 428 LLIVVMIGE 436 (438)
T ss_pred HHHHHHhhc
Confidence 44 446664
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=105.61 Aligned_cols=175 Identities=17% Similarity=0.149 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh--cchHHHHH-H
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQI-D 160 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~-~ 160 (503)
+.+.++.++++.++....+..+.--.|.+ .|..|. +...+++..++|=++...|.+++|+++||+ |||....+ .
T Consensus 250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~--s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~ 327 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGF--SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIF 327 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHH
Confidence 34558899999988888887666555544 455566 888899999999999999999999999996 77765554 4
Q ss_pred hHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHH-HHHHHHHhhccCC
Q 010721 161 TIPLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAE 237 (503)
Q Consensus 161 ~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~ 237 (503)
+++..++.+..-+++ |++...++-++.|+..-+..-.......|..|++--|.+.|+.+.+..+ |.+.+....+++.
T Consensus 328 ~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~ 407 (448)
T COG2271 328 MLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA 407 (448)
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE
Confidence 444444444454554 5688888999999988777777777889999999999999999999998 9999999999998
Q ss_pred CCCchhHHHHHhhHHHHHHHHHHhc
Q 010721 238 DDPHWWRTMLYIASLPGFILALGMQ 262 (503)
Q Consensus 238 ~~~~~wr~~~~~~~~~~~~~~~~~~ 262 (503)
+..| |...|.+..+.+++..++..
T Consensus 408 d~~g-W~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 408 DTWG-WDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred ecCC-CcchHHHHHHHHHHHHHHHH
Confidence 8877 99999987777766655443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-10 Score=103.54 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhhhhhcccchhhHhHHHh---hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKE---LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
.+++..++.|+............+.+.++ +|+ ++.+.++..+.+..+..+|.++.+++.||+|+|+++.++.++.
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~--s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~ 218 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGL--PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 34445555555544444444445555543 466 8899999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
.++.++....++...+ .+-++.|++.+..+|...+...+..+++ .+.+.++. ....+|.+++|++.|.+.+..+ .+
T Consensus 219 ~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~ 294 (310)
T TIGR01272 219 VLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQ 294 (310)
T ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-ch
Confidence 8877666665554333 4566899999999999999999988765 45666665 5667899999999999988777 88
Q ss_pred HHHHhhHHH
Q 010721 245 TMLYIASLP 253 (503)
Q Consensus 245 ~~~~~~~~~ 253 (503)
..|++..+.
T Consensus 295 ~a~~v~~~~ 303 (310)
T TIGR01272 295 LAFALPVPC 303 (310)
T ss_pred HHHHHHHHH
Confidence 888754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=110.20 Aligned_cols=144 Identities=14% Similarity=0.004 Sum_probs=118.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhhhhchhhhh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-HSLDEMLWGRFLVGLGIGVNTVLVPI 200 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 200 (503)
+....+++.+.+.+.....+++.|++.||+++|+.+..++++.+++.+...++ ++.+.++++.++.|+|.+...|....
T Consensus 242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~ 321 (395)
T PRK10054 242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYM 321 (395)
T ss_pred HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66677888888888888888999999999999999999998888888777764 57777788899999999988888899
Q ss_pred hhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc-ccCC
Q 010721 201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVES 267 (503)
Q Consensus 201 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~~~ 267 (503)
++.+..|++.|+.+.+..+ ...+|..+||.+++.+.+..+ .+..|++.++...+..+..+. ..|+
T Consensus 322 ~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (395)
T PRK10054 322 LIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAWLLMLKGMRAR 387 (395)
T ss_pred HHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999988765 566899999999999999887 777887766655555444433 4443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=106.42 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=114.5
Q ss_pred hHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh-----hhHHHHHHH
Q 010721 110 IVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-----HSLDEMLWG 183 (503)
Q Consensus 110 ~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~ 183 (503)
.|.+ .+++|. ++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+. ++++.+++.
T Consensus 238 ~p~~~~~~~g~--~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (406)
T PRK15402 238 SPVILISGEQL--SSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG 315 (406)
T ss_pred hHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 4444 566788 88888988888888999999999999999999999999988888777776654 356677888
Q ss_pred HHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHH
Q 010721 184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL 257 (503)
Q Consensus 184 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~ 257 (503)
-++.|++.+...+......... ++++||++.+.++....+|..+|+.+++.+.+..+ |....+..++.+++.
T Consensus 316 ~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 316 LSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHH
Confidence 9999999998877766655443 45789999999999999999999999999988777 555444444444444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-10 Score=109.00 Aligned_cols=153 Identities=12% Similarity=0.048 Sum_probs=121.0
Q ss_pred hhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010721 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186 (503)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 186 (503)
..+|.+.++.+. ++.+.+++.+...++...+..+.+++.|| ++.|+.+..+.++.+++.++.+++++++.+.+..++
T Consensus 229 ~~~p~~~~~~~~--~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 306 (400)
T PRK11646 229 LMLPIMVNDIAG--SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL 306 (400)
T ss_pred HhhhhhHHhhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 346777677655 66778888888888777666666777764 666777788888888888888888888888888889
Q ss_pred HHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc---hhHHHHHhhHHHHHHHHHHhc
Q 010721 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH---WWRTMLYIASLPGFILALGMQ 262 (503)
Q Consensus 187 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~---~wr~~~~~~~~~~~~~~~~~~ 262 (503)
.|++.+...|...+++.+..|+++|++++++++....+|..+||.+++++.+..+ .-...+++.++++++..+...
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence 9999998889999999999999999999999999999999999999999987642 134555555655555554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-10 Score=111.27 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=109.0
Q ss_pred hHh-HHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcch-------HHHHHHhHHHHHHHHHHHhhhhHHHHH
Q 010721 110 IVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR-------RTFQIDTIPLILGAIISAQAHSLDEML 181 (503)
Q Consensus 110 ~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~l~ 181 (503)
+|. +.+++|+ +..+.+.+.+++.++..++.+++|+++||+||| ..+.+..++.++..++....++.+..+
T Consensus 275 ~p~~l~~~~g~--s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 352 (476)
T PLN00028 275 IAEYFYDRFGL--SLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAI 352 (476)
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 444 4566788 888899999999999999999999999999875 233334444444444555566666666
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHh
Q 010721 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (503)
Q Consensus 182 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~ 261 (503)
+.-++.+++.+.......+++.+..| ++++.+.|+.+.+..+|.++++.+.+ .....+ |+..|++.+++.++..++.
T Consensus 353 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~-y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 353 VVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYS-TETGISLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCcc-HhhHHHHHHHHHHHHHHHH
Confidence 66677777666565666666667654 57999999998888888888887754 222233 9999999888887777666
Q ss_pred cccc
Q 010721 262 QFTV 265 (503)
Q Consensus 262 ~~~~ 265 (503)
++++
T Consensus 430 ~~~~ 433 (476)
T PLN00028 430 AFIH 433 (476)
T ss_pred Hhee
Confidence 6654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=108.42 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=110.8
Q ss_pred hHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Q 010721 110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ-AHSLDEMLWGRFLVG 188 (503)
Q Consensus 110 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G 188 (503)
.|.+.+.+|. ++.+.+++.+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..+++.++.+
T Consensus 223 ~~~~~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK10091 223 KPYMMFISGF--SETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC 300 (382)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3566666788 8888999999999999999999999999999999999988888887766543 456666666777777
Q ss_pred hhhhhhchhhhh-hhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhc
Q 010721 189 LGIGVNTVLVPI-YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ 262 (503)
Q Consensus 189 ~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~ 262 (503)
++.....+.... ...+..+++.++.. ..+....+|..+||.+++.+.+..++|++.+.+.+++.++......
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 766554444443 34444444444433 3467789999999999999888644499999987777666654443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=9e-11 Score=112.82 Aligned_cols=155 Identities=20% Similarity=0.142 Sum_probs=109.3
Q ss_pred HHHHHHHHhhhhhhcccchhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcc-hHHHH-HHh-HHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQ-IDT-IPLI 165 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~-~~~-~~~~ 165 (503)
+.+.+..++............|.+ .+++|. +..+.+++.+.+.++..++.++.|++.||+++ |+... ... ....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 219 WYISLGYVFVYVVRTGILDWSPLYLTQEKGF--SKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 334444444444433444445544 466788 88889999999999999999999999998643 33222 222 1222
Q ss_pred HHHHHHHh--hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchh
Q 010721 166 LGAIISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (503)
Q Consensus 166 ~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~w 243 (503)
++...... ..+.+.++++.++.|+......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ |
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~ 375 (379)
T TIGR00881 297 VSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-W 375 (379)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-c
Confidence 22222222 24556666777888877666666677789999999999999999999999999999999999998877 8
Q ss_pred HHHH
Q 010721 244 RTML 247 (503)
Q Consensus 244 r~~~ 247 (503)
++.|
T Consensus 376 ~~~f 379 (379)
T TIGR00881 376 AGAF 379 (379)
T ss_pred cccC
Confidence 8654
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-10 Score=110.30 Aligned_cols=175 Identities=15% Similarity=0.050 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhhhhhhcccchhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHH--------H
Q 010721 88 HVLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF--------Q 158 (503)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l--------~ 158 (503)
.++.+++..+...+....+...+|.+ .+.+|. +..+.+++.++..++..++.++.|+++||+++|+.. .
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRV--SGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 35555566566555555555566655 456788 888999999999999999999999999998765321 1
Q ss_pred HHhHHH--HHHHHHHHh-hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhcc
Q 010721 159 IDTIPL--ILGAIISAQ-AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP 235 (503)
Q Consensus 159 ~~~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 235 (503)
.+.... ++..++... ..+....+++-++.+.+.+...+.......|..|+ .+|.++++.+....+|.+++|.+.+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~ 418 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGN 418 (465)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 111111 111111122 23444445555566665555555555556677765 69999999999999999999999998
Q ss_pred CCCCC--chhHHHHHhhHHHHHHHHHHhcccc
Q 010721 236 AEDDP--HWWRTMLYIASLPGFILALGMQFTV 265 (503)
Q Consensus 236 l~~~~--~~wr~~~~~~~~~~~~~~~~~~~~~ 265 (503)
+.+.. +.|+..|.+.++..++..+...++.
T Consensus 419 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 419 ILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred eeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 87653 3499999998888888776665544
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=108.67 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=108.7
Q ss_pred ccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHhHHHHHHHHHHHhhhhHHHHHHH
Q 010721 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183 (503)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (503)
.....+|.+.++.|. +..+.+.+.+.+.++..+++++.|++.||+ +||+.+.++.++.+++.++..+.++..... .
T Consensus 215 ~~~~~lp~~~~~~g~--~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 291 (355)
T TIGR00896 215 SLIGWLPAILISHGA--SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-W 291 (355)
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence 334456777778888 888899999999999999999999999999 566777788888888877777665433322 4
Q ss_pred HHHHHhhhhhhchhhhhhhhhcCC-CCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhH
Q 010721 184 RFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (503)
Q Consensus 184 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr 244 (503)
-++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+++.+..++|.
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 578899999999888777776555 4557888999888889999999999999887665454
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-10 Score=108.41 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcC-cc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AG 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 410 (503)
.+...+...++..++.++.|++.||+|||+.+..+.++..++.+...... +...+. ...+..+++.+ ..
T Consensus 42 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~l~g~~~~~~~ 111 (385)
T TIGR00710 42 VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN---------NIETLL-VLRFVQAFGASAGS 111 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc---------cHHHHH-HHHHHHHcchhHHH
Confidence 44667788888999999999999999999999998888888777766522 122222 22222333322 34
Q ss_pred ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCC
Q 010721 411 PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG 484 (503)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (503)
+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..+.+.+++.++..++.++..+|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 56678889999999999999999999999999999999999999999999888887777776666566665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-10 Score=105.83 Aligned_cols=142 Identities=9% Similarity=-0.022 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 411 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (503)
.+...+.+.++..++.+..|+++||+|||+++.........+.+ ..... .+ ...+...-+..+.+.+..+
T Consensus 28 ~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~--------~~-~~~l~~~R~l~G~g~~~~~ 97 (368)
T TIGR00903 28 LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDP--------FN-YEWLLACQLLAALGQPFLL 97 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHh--------cc-HHHHHHHHHHHHhHhHHHH
Confidence 44667778888999999999999999988876544443333322 11110 11 1222222222233333333
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCC
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETK 483 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (503)
.......|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|.+.+++.++..++.++.+||.+
T Consensus 98 ~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 98 NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344556888999999999999999999999999999999999999999999888888887777777777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=104.04 Aligned_cols=145 Identities=14% Similarity=0.017 Sum_probs=116.0
Q ss_pred hHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 010721 110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGL 189 (503)
Q Consensus 110 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 189 (503)
.|.+.+++|+ +..+.+++.+.+.++..++.++.+++.||.+++..+....+...+..++....++.+.+.+..++.|+
T Consensus 240 ~p~~~~~~g~--s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~ 317 (394)
T PRK10213 240 RPVYMNLAGF--GVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL 317 (394)
T ss_pred HHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4777788888 88889999999999999999999999999654433443333344445555566778888889999999
Q ss_pred hhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHH
Q 010721 190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258 (503)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~ 258 (503)
+.+...+...+++.+..| ++++++.++......+|..+|+.++|.+.+..+ ++..++..+++.++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHH
Confidence 999999999989998887 447788888888999999999999999998877 8888888766554443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-08 Score=92.64 Aligned_cols=316 Identities=11% Similarity=-0.003 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCC
Q 010721 130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK 209 (503)
Q Consensus 130 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 209 (503)
.++-+..+.+++++.+.+.|+.|.|+.++++..+...-.+..-+ +|-+-++++-.+.|+|.+..+..-..+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888888899999999999999999999999998888777766 45667888999999999999999999999999999
Q ss_pred CccchhhHHHHHHHHHHHHHHHhhccCCCCCc-------hhH-H----------HHHhhHHH---HHHHHHHhccccCCh
Q 010721 210 YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-------WWR-T----------MLYIASLP---GFILALGMQFTVESP 268 (503)
Q Consensus 210 ~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~-------~wr-~----------~~~~~~~~---~~~~~~~~~~~~~~~ 268 (503)
++.+..++.......+.++|..+...+..... +-+ + ...+.+++ ..+..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999988888888888766544432111 011 0 11111222 122223333344322
Q ss_pred HHH-HhcC--ChHHHHHHHHHHcCCcchHHHHHHHHHH--HHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHH
Q 010721 269 RWL-CKGG--MLNDAKAVIANLWGESEINKAIEEFQLV--IKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTN 343 (503)
Q Consensus 269 ~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (503)
... .++. ...+..+..-+....+............ ...............-+.... ......+......+++.
T Consensus 215 ~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~--n~~~~~ai~~~~~g~g~ 292 (461)
T KOG3098|consen 215 VVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGS--NTTYLIAIYSIGIGLGE 292 (461)
T ss_pred hhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccC--cchhHHHHHHHHHhHHH
Confidence 111 1111 1112212222222222211111110000 000000000000000001111 11111334456667777
Q ss_pred HHHHHhHHHhhcc---cCCchHHHhhHHHHHHHHHHHHHHhcCCCC--c------chhhHHHHHHHHHHHHHH-hcCccc
Q 010721 344 FAGALCASYLMDK---EGRQKLLIGSYLGMAISMLLVVGATSLPLD--E------DFSHNLSILGTLFYIFTF-AIGAGP 411 (503)
Q Consensus 344 ~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~-~~~~~~ 411 (503)
+++....+.+.+| +|+++++.++..+..+.+++.........+ + ...+...+..++.+..++ -..+..
T Consensus 293 v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t 372 (461)
T KOG3098|consen 293 VIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNT 372 (461)
T ss_pred HHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHH
Confidence 7788888888766 678888888877777776666553322211 0 011122222222222232 333456
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 449 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g 449 (503)
..+.++...+| +.|..+.++.-.-..++..++-...+
T Consensus 373 ~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 373 QRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66777888885 55888888887777776665444433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-09 Score=102.28 Aligned_cols=165 Identities=16% Similarity=0.084 Sum_probs=123.4
Q ss_pred hhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh---hh
Q 010721 100 GYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA---HS 176 (503)
Q Consensus 100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~ 176 (503)
.-+.+.+......+-++-|+ +..++-+......+...+..+++..+.||+|||+.++++..++.+..+++... .+
T Consensus 283 ~sGi~ai~~Yst~i~~~aG~--~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~ 360 (485)
T KOG0569|consen 283 FSGINAIFFYSTSIFKTAGF--TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSN 360 (485)
T ss_pred hcCcceeHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566788888899 88888889999999999999999999999999999999999998888877654 22
Q ss_pred HH------HHHHHHHHHHhhhhh-hchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 177 LD------EMLWGRFLVGLGIGV-NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 177 ~~------~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
.. ..+++.++..++.+. ..|...-+.+|.+|++.|..++++.....-+..++-...-..+.+..|. +.|+.
T Consensus 361 ~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~fil 438 (485)
T KOG0569|consen 361 SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFIL 438 (485)
T ss_pred HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHH
Confidence 21 123333333333332 4677788899999999999999999888888888777776666666663 66777
Q ss_pred hHHHHHHHHHHh-ccccCCh
Q 010721 250 ASLPGFILALGM-QFTVESP 268 (503)
Q Consensus 250 ~~~~~~~~~~~~-~~~~~~~ 268 (503)
..+++++..+.. ..+||+.
T Consensus 439 F~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 439 FVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHHHhCcccC
Confidence 777776665544 5599974
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-10 Score=106.95 Aligned_cols=142 Identities=18% Similarity=0.038 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcccc
Q 010721 333 ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPV 412 (503)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (503)
....+.+.++..++.++.|+++||+|||+++..+..+..++.++..... +...++..-++.+.......+.
T Consensus 54 ~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~---------~~~~l~~~r~l~Gi~~~~~~~~ 124 (413)
T PRK15403 54 PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT---------SMTQFLIARFIQGTSICFIATV 124 (413)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899999999999999999999988888877777665521 1222222222222211122344
Q ss_pred ccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCC
Q 010721 413 TGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETK 483 (503)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (503)
...+..|.+|+++++++.++.+....++..++|.+.+.+.+..||++.|++.+++.++..++.++..||++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 55778889999999999999999999999999999999999889999999888877777665555567654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-11 Score=111.83 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 411 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (503)
.+++...+.+...+.+++.|++.||+.||+++.+|..+-.++.++..+. .+.+.+++.-.+.+..-..+.|
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs---------~~Fwq~~l~R~~vGiGeAs~~~ 140 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS---------NHFWQVLLCRGFVGIGEASYSP 140 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhccchhhhcc
Confidence 3356778889999999999999999999999999999988888887763 2333444333343434455678
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchhHhHHHHHHHHHHHHHhhccCCCCCCHHH
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIVETKGRSLEE 489 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (503)
+..++++|.+|.++|++++++.+....+|..+|-...+.+.+..+ |++.|...+++.++.+++..++.+|..++..++
T Consensus 141 ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 141 IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 899999999999999999999999999999998888888877777 999999999999999998888888776554333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=93.74 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=128.3
Q ss_pred CCchHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHh
Q 010721 82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT 161 (503)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~ 161 (503)
....+..+.++|..+....+..-..++ ..+++.||+ ++...+-+.+.-..-.++.+++.|.++|++|++...+.+.
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~--~fF~~rfGl--S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a 337 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGP--MFFQKRFGL--SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASA 337 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCC--ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHH
Confidence 334445566666666655554443333 357899999 8888888888888888899999999999999998887755
Q ss_pred HHH-HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 162 IPL-ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 162 ~~~-~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
.+. .++-.+..| +.+.=.+...+.|+..+.........++...|+++.|++.|..+...++|..+.|++++.+.+..
T Consensus 338 ~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~ 415 (459)
T KOG4686|consen 338 CILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD 415 (459)
T ss_pred HHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence 443 444444433 33444566778888887777767778888999999999999999999999999999999999877
Q ss_pred ch--hHHHHHh-hHHHHHHHHHHhccc
Q 010721 241 HW--WRTMLYI-ASLPGFILALGMQFT 264 (503)
Q Consensus 241 ~~--wr~~~~~-~~~~~~~~~~~~~~~ 264 (503)
++ |--.|.+ .+.+++....+.+.+
T Consensus 416 g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 416 GSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 64 4444444 444444444444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-10 Score=107.65 Aligned_cols=141 Identities=17% Similarity=0.210 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcC-ccc
Q 010721 333 ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGP 411 (503)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 411 (503)
+...+...++..++.++.|+++||+|||+.+..+.++..++.+++.... +...+.... +..+.+.+ ..+
T Consensus 41 ~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~---------~~~~~~~~~-~l~g~~~~~~~~ 110 (392)
T PRK10473 41 HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE---------TSSLFLAGR-FLQGIGAGCCYV 110 (392)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC---------cHHHHHHHH-HHHHhhhhHHHH
Confidence 3556777888889999999999999999999988888887777765522 112222222 22222222 245
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCC
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETK 483 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (503)
....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+.+.+++.++..++.+...+|++
T Consensus 111 ~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 111 VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 567788899999999999999999999999999999998888889998888888877777776666666654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-10 Score=106.11 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 411 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (503)
.+...+...++..++.++.|++.||+|||+.+..+.++..++.+++.... +...+....++.+.......+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~l~g~~~~~~~~ 98 (377)
T PRK11102 28 VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ---------TIDQLIYMRFLHGLAAAAASV 98 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc---------cHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888999999999999999999999999888888877776532 122222222222222222345
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCC
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVET 482 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (503)
....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|.+.+.+.++..++..+..+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 56678889999999999999999999999999999999999999999999888887777766665566654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=109.10 Aligned_cols=141 Identities=22% Similarity=0.153 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 411 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (503)
.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.. +.+ .+....++.+.......+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~l~g~~~~~~~~ 104 (352)
T PF07690_consen 34 IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS--------NFW-LLLIARFLLGIGSGFFSP 104 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC--------CHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh--------hHH-HHhhhccccccccccccc
Confidence 34567778889999999999999999999999999888888844444321 223 333333333333334457
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccC
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (503)
....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|++.+++.++..++...+.++
T Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 105 ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence 7788899999999999999999999999999999999999988899999999998888887754444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-10 Score=113.28 Aligned_cols=142 Identities=12% Similarity=0.028 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcccc
Q 010721 333 ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPV 412 (503)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (503)
++..+...++..++.++.|++.||+|||+.+..+.++..++.++.... ++...++...++.+.......+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~G~~~~~~~~~ 110 (485)
T TIGR00711 40 QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA---------PNLELMIIFRVIQGFGGGPLIPL 110 (485)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc---------CCHHHHHHHHHHHHhhhhhHHHH
Confidence 355677889999999999999999999999999988888887776542 12222333333323223334566
Q ss_pred ccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCC
Q 010721 413 TGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETK 483 (503)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (503)
...++.|.+|+++|+++.++......+|..++|.+.+++.++.||++.|++.+.+.++..++..+..++.+
T Consensus 111 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 111 SFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 77889999999999999999999999999999999999999999999998887777766666655665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=119.99 Aligned_cols=143 Identities=20% Similarity=0.174 Sum_probs=121.2
Q ss_pred HhHHHhhCCCCCch-HHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 010721 111 VSIAKELGFEGNPI-LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGL 189 (503)
Q Consensus 111 ~~i~~~~~~~~~~~-~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 189 (503)
+.+.+.+|. +.. +.+++.+.+.++.++++++.|+++||+++|+++.++.++.+++.++..+..+++.++++.++.|+
T Consensus 257 ~~~~~~~g~--s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 334 (1146)
T PRK08633 257 AYAKEVLGL--DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF 334 (1146)
T ss_pred HHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344567888 777 89999999999999999999999999999999999999999888888888899999999999999
Q ss_pred hhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHH
Q 010721 190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF 255 (503)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~ 255 (503)
+.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+......+...|++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888877654321125666666554443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-10 Score=110.72 Aligned_cols=140 Identities=15% Similarity=-0.010 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccc
Q 010721 334 LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVT 413 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (503)
+....+.++..++.+..|+++||+|||+.+..+.++..++.++..... +...++..-.+.+....+..+..
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~---------~~~~li~~r~l~G~g~~~~~~~~ 115 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP---------TASWLIATRALLAIGAAMIVPAT 115 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788889999999999999999999999988888877632 22222222222222222233444
Q ss_pred ccccccc-CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCC
Q 010721 414 GLVIPEL-SSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVET 482 (503)
Q Consensus 414 ~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (503)
...+.+. .|+++|+++.|+......+|..++|.+.+.+.++.||++.|++...+.++..++..+..++.
T Consensus 116 ~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 116 LAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4445454 47789999999999999999999999999999999999999988877777766666666654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=120.77 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=120.8
Q ss_pred cccchhhHhHH-HhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh--------
Q 010721 104 GVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-------- 174 (503)
Q Consensus 104 ~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------- 174 (503)
..+...+|.+. +.+|. +..+.|++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 242 ~~~~~~~p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (1140)
T PRK06814 242 AVVLSQLPLLAKETLGG--DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEP 319 (1140)
T ss_pred HHHHHHhHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccc
Confidence 33334455554 45677 88899999999999999999999999999888877777766666665555443
Q ss_pred ------------hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCch
Q 010721 175 ------------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 175 ------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 242 (503)
++.+.++++.++.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++.+.+.....+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~ 399 (1140)
T PRK06814 320 AQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFS 399 (1140)
T ss_pred ccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 67788888999999999999999999999999999999999999999999999999998888643322
Q ss_pred hHHHHHhhHHHHHH
Q 010721 243 WRTMLYIASLPGFI 256 (503)
Q Consensus 243 wr~~~~~~~~~~~~ 256 (503)
+...+++.+++.++
T Consensus 400 ~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 400 IPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHHH
Confidence 67766665544333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-10 Score=99.77 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcc
Q 010721 331 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG 410 (503)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (503)
+++++.+.+.+..++.++..|.++||+|||.++.++.+..++...+.+. ......+...=+.++..-+..
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~----------S~~F~afv~aR~l~Gi~kgnl 138 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL----------SRNFAAFVLARFLGGIFKGNL 138 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhccCch
Confidence 4778889999999999999999999999999999999998887777665 222333333334455555666
Q ss_pred ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 411 PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 453 (503)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 453 (503)
.+..++++|++++++|+.+++.+.+...+|-++||.++|++..
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 6788999999999999999999999999999999999999987
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-11 Score=110.14 Aligned_cols=147 Identities=11% Similarity=0.125 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhh----hhcchHHHHH-HhHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTFQI-DTIP 163 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~ 163 (503)
++.++...+-..++...--..++++.+++|+ +....+.+--...+...+.+++.|..+| ||||||.++. +.+.
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGv--phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTPYLQSLGV--PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHcCC--CcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 4455555555555665556667888888999 7777788888888888899999999999 5899877665 6667
Q ss_pred HHHHHHHHHhhhhHHH-----------------HHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccc-hhhHHHHHHHHH
Q 010721 164 LILGAIISAQAHSLDE-----------------MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS-LGTLCQVGTCLG 225 (503)
Q Consensus 164 ~~~~~~~~~~~~~~~~-----------------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G 225 (503)
..++.++..++.++.. ++++--+.=++.-.....+-+++.|...++++.+ +++++.....+|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 7777788877754443 3444445555666777888899999998777766 999999999999
Q ss_pred HHHHHHhhccCC
Q 010721 226 IITSLFLGIPAE 237 (503)
Q Consensus 226 ~~ig~~~~~~l~ 237 (503)
+.+|..++.++.
T Consensus 192 nvLGY~~g~y~~ 203 (498)
T KOG0637|consen 192 NVLGYALGSYLG 203 (498)
T ss_pred ceeeeecccccC
Confidence 999999887554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-10 Score=102.53 Aligned_cols=173 Identities=14% Similarity=0.042 Sum_probs=130.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhH-hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
++.+++.++...-..-.++..+| .++++|++ ++...|...+.+.+...+..+.+|+++||+|.+|++......++++
T Consensus 220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~--~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGL--SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA 297 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence 45555555544444444455555 55788888 8888999999999999999999999999999999999988888888
Q ss_pred HHHHHhh-------hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 168 AIISAQA-------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 168 ~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
..+.++. .+....++.-+..++..|........++..++++ +-|.+.|+..+..++|...-|..-+...+..
T Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t 376 (417)
T COG2223 298 AALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT 376 (417)
T ss_pred HHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc
Confidence 8877765 3444444444444444444455566677777765 5899999999999999888888877777766
Q ss_pred chhHHHHHhhHHHHHHHHHHhccc
Q 010721 241 HWWRTMLYIASLPGFILALGMQFT 264 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~~~~~~~ 264 (503)
+.++..|++.....+++.+..+..
T Consensus 377 g~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 377 GSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 669999999888888887766543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.3e-09 Score=97.32 Aligned_cols=177 Identities=15% Similarity=0.100 Sum_probs=132.3
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHh-hCCCCCchHH-HHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILE-GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~-g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~ 166 (503)
..++|+-.|+..+--+ -....|.+.+. .|+ +..|+ .-+.-...-.+....++...+.|..|.|++++++.+...+
T Consensus 7 ~~llc~~gf~~~frPs-EPfl~~yL~~~~kn~--T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~ 83 (412)
T PF01770_consen 7 TLLLCLFGFFKEFRPS-EPFLTPYLTGPDKNF--TEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYII 83 (412)
T ss_pred HHHHHHHHHHHhcCCC-CccchHHHcCCccCC--CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444444444333221 12233455544 566 55554 3456667777888999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc-hhHH
Q 010721 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRT 245 (503)
Q Consensus 167 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~-~wr~ 245 (503)
..++..+.++...+-+..++-|++.+. ..+-.+++-...|+++-.++.+...++..+|..++.++|-.+....+ ..+.
T Consensus 84 t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~ 162 (412)
T PF01770_consen 84 TWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQ 162 (412)
T ss_pred HHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999999999999884 67777888888899988999999999999998988888877665332 1667
Q ss_pred HHHhhHHHHHHHHHHhccccCChH
Q 010721 246 MLYIASLPGFILALGMQFTVESPR 269 (503)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~ 269 (503)
...+......+.++..+++|..++
T Consensus 163 L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 163 LNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCc
Confidence 766666655666666677776543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=102.73 Aligned_cols=176 Identities=15% Similarity=0.200 Sum_probs=138.1
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhC-CCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELG-FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
+....+..++.+.....+....+.+.+|.| . +....+.+.++..++=...-.+.+++..|+|.|+++.++.+.+++=
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~--~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGY--SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVR 286 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 334445556667777777777788888887 5 5566777778888888888899999999999999999999999999
Q ss_pred HHHHHhh-hhHHHHHHH----HHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHH-HHHHHHHHHHHhhccCCCCCc
Q 010721 168 AIISAQA-HSLDEMLWG----RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQV-GTCLGIITSLFLGIPAEDDPH 241 (503)
Q Consensus 168 ~~~~~~~-~~~~~l~~~----r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~ig~~~~~~l~~~~~ 241 (503)
..+.+.. ++.+...+. ..+.|+.-+..+.+...++.+..|++.|+++.+++.. ..++|..+|.+++|++.+..+
T Consensus 287 ~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 287 WLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 9888887 555544333 4569999999999999999999999999999999875 578999999999999988755
Q ss_pred h-----hHHHHHhhHHHHHHHHHHhcc-ccC
Q 010721 242 W-----WRTMLYIASLPGFILALGMQF-TVE 266 (503)
Q Consensus 242 ~-----wr~~~~~~~~~~~~~~~~~~~-~~~ 266 (503)
. |...+.+.+++.++..++.++ ++|
T Consensus 367 ~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 367 ARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1 555666666666555544433 443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-10 Score=98.47 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=101.9
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccc
Q 010721 134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 213 (503)
Q Consensus 134 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 213 (503)
.+.-.-|.++.+++.||+|||+.+..+.+++++..++.-...+-..+.+.-|..-++..+.+.+++.|..|.||.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34455788999999999999999999999999999888776544444444444444455677788889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccccCCh
Q 010721 214 LGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268 (503)
Q Consensus 214 ~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~ 268 (503)
..|.-....-+|.++.|+++- ..+. . -..+..+.+.+.++..+...++|-++
T Consensus 471 gvGtcSsmaRIggI~~p~iA~-~~e~-s-~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAM-RAEL-S-TSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHH-Hhcc-c-eeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999982 2222 2 33556667777777777788877443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=102.35 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=108.5
Q ss_pred HhHHHhhCCCCCchHHHHHHHHH-HHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH---Hhh-hhHHHHHHHH-
Q 010721 111 VSIAKELGFEGNPILEGLVVSIF-IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---AQA-HSLDEMLWGR- 184 (503)
Q Consensus 111 ~~i~~~~~~~~~~~~~g~~~s~~-~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r- 184 (503)
+.+.+++|+ +..+.+++.+.. .++..++.++.|++.||+|+|+.+.++.++..+..+.. ++. ++.+.++++-
T Consensus 234 ~~l~~~~G~--~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 311 (402)
T PRK11902 234 TFLIRGAGF--SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG 311 (402)
T ss_pred HHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 456777888 888899988665 45688999999999999999998887777666554433 343 4556555554
Q ss_pred ---HHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHh
Q 010721 185 ---FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (503)
Q Consensus 185 ---~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~ 261 (503)
++.|++.+...+....++.+.+|.++ .++++...++|.++++.+++.+.+..| |+..|.+.++++++.+++.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777776554 456666667888777778999988888 9999999888888776665
Q ss_pred cccc
Q 010721 262 QFTV 265 (503)
Q Consensus 262 ~~~~ 265 (503)
+..+
T Consensus 387 ~~~~ 390 (402)
T PRK11902 387 WLMR 390 (402)
T ss_pred HHHh
Confidence 4443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-10 Score=100.85 Aligned_cols=145 Identities=15% Similarity=0.085 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 411 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (503)
.+.+.....+.+++..++.|.++||+|+|..+++|...+....+++.+... .+..++.-.+-..+ ......
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s--------y~~l~vAR~LQgvg-sA~~~t 178 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS--------YPMLFVARSLQGVG-SAFADT 178 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch--------hHHHHHHHHHhhhh-HHHHHh
Confidence 557788899999999999999999999999999999999999999888432 12222222222222 223344
Q ss_pred cccccccccCCccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCCC
Q 010721 412 VTGLVIPELSSNRT-RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGR 485 (503)
Q Consensus 412 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (503)
...+++++.+|++. |++++|+.-.+..+|-.++|+++|.+++..|++.+|++++.++++...+.++.++.++.+
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 56688889998764 699999999999999999999999999999999999999999999988877766655443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.2e-09 Score=100.13 Aligned_cols=140 Identities=15% Similarity=0.105 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcccc
Q 010721 333 ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPV 412 (503)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (503)
++..+...++..++.++.|+++||+|||+.+..+.++..++.+++.+... +...+....++ .+.+.+..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~-~g~~~~~~~~ 110 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ--------SYSVLLLLRLF-IGIAGGSFAS 110 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHH-HHHhchhhHh
Confidence 45677888899999999999999999999999999888888877765320 22222222222 2233333344
Q ss_pred ccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCcchh-HhHHHHHHHHHHHHHhhccC
Q 010721 413 TGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET----------FGVAPVY-AGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 481 (503)
...++.|.+|+++|+.+.++.....++|..+++.+.+.+... .+|++.| ...+++..+..++.+...++
T Consensus 111 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 111 CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 567788999999999999999988888888888888777653 3688887 44354444444444444443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=101.13 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=99.5
Q ss_pred hhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHH-HHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh----
Q 010721 100 GYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFI-AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA---- 174 (503)
Q Consensus 100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---- 174 (503)
...........|.+.+++|. +..+.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.
T Consensus 222 ~~~~~~~~~~~~~~l~~~g~--~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (356)
T TIGR00901 222 KLGDSAATVLTTLFLLDMGF--SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNG 299 (356)
T ss_pred HHHHHHHHHHHHHHHHHcCC--CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333344556666667888 8888888887665 6788999999999999999999999888888877765543
Q ss_pred -------hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHH
Q 010721 175 -------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTC 223 (503)
Q Consensus 175 -------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 223 (503)
++.+.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 300 HHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 4567788889999999999999999999999999999999999887654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-09 Score=102.08 Aligned_cols=134 Identities=12% Similarity=0.063 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccc-CCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCc-
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA- 409 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 409 (503)
++.....+.+...++.+++|+++||+ |||+.+.++.++..++.+++..... ..........+.. .+.+.
T Consensus 47 a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~-------~~~~~~l~l~li~--iG~G~~ 117 (493)
T PRK15462 47 AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI-------HPSFLYLSLAIIV--CGYGLF 117 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHH--Hhcccc
Confidence 44556677778888999999999998 9999999999988888765543110 1111222222222 22333
Q ss_pred cccccccccccCCcc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHH
Q 010721 410 GPVTGLVIPELSSNR--TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALF 474 (503)
Q Consensus 410 ~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 474 (503)
.+...+++.|.+|++ .|.++.++.+...++|+.++|.+.+++.+..||+..|.+.++..+++.+.
T Consensus 118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 355567889999875 69999999999999999999999999999999999998766554444443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.4e-09 Score=99.37 Aligned_cols=141 Identities=15% Similarity=-0.005 Sum_probs=111.4
Q ss_pred HhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 010721 111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLG 190 (503)
Q Consensus 111 ~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 190 (503)
+.+++.+|. ++.+.|++.+.+.++..+++++.+++.||+++|+++..+. +.++..++.++.++++..+++-++.|++
T Consensus 230 ~~~~~~lg~--s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (393)
T PRK11195 230 AWAPVALGI--TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGAL 306 (393)
T ss_pred HHHHHHcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 345667787 8889999999999999999999999999999999888875 4445555566677888788888899999
Q ss_pred hhhhchhhhhhhhhcCCCCC-ccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHH
Q 010721 191 IGVNTVLVPIYISEVAPTKY-RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPG 254 (503)
Q Consensus 191 ~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~ 254 (503)
.+...+...+.+.+..|+++ +|++.++.+....+|..++..+.+.+....-.++..+...+.+.
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLV 371 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99888888888888766654 79999999999999999999888866433222555555454443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.8e-09 Score=100.36 Aligned_cols=142 Identities=15% Similarity=0.038 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcC-cc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AG 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 410 (503)
.+...+...++..++.++.|+++||+|||+.+..+..+..++.+...... +...+... .+..+++.+ ..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~-~~~~g~~~~~~~ 114 (394)
T PRK11652 45 VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH---------SLTVLIAA-SAIQGLGTGVGG 114 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc---------cHHHHHHH-HHHHHhhhhHHH
Confidence 34556778888999999999999999999999988887777776655421 12222222 222222222 23
Q ss_pred ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCC
Q 010721 411 PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETK 483 (503)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (503)
+....+..|.++.++++.+.++.+....++..++|.+.+.+.+..||+..|.+.+++.++..++..+..+|++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 4455667788888889999999999999999999999999999889999998877776666555555566654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-09 Score=102.95 Aligned_cols=129 Identities=14% Similarity=0.079 Sum_probs=101.0
Q ss_pred chhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhh--hHHHHHHH
Q 010721 107 NGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWG 183 (503)
Q Consensus 107 ~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~ 183 (503)
....|.+ ++.+|. ++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++.
T Consensus 248 ~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 325 (448)
T PRK09848 248 SASSLFYVRYVLND--TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA 325 (448)
T ss_pred hhhheeeEeeecCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 3334444 334554 555555555555677888999999999999999999999999888888777653 67777778
Q ss_pred HHHHHhhhhhhchhhhhhhhhcCCCC-------CccchhhHHHHHHHHHHHHHHHhhccCC
Q 010721 184 RFLVGLGIGVNTVLVPIYISEVAPTK-------YRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 184 r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 237 (503)
.++.|+|.+...+...++.+|..|.+ ++|...++++....+|..+|+.+.+.+.
T Consensus 326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999988754 3588899999999999999888776554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.8e-09 Score=101.40 Aligned_cols=147 Identities=19% Similarity=0.106 Sum_probs=120.4
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
...+.+..++..+.........+.+.++.-- ++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.
T Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~--~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLG--NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF 304 (428)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence 4445555566666666666666666665432 34567888889999999999999999999999999999999999999
Q ss_pred HHHHhhh--hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCC-------CCccchhhHHHHHHHHHHHHHHHhhccCC
Q 010721 169 IISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 169 ~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 237 (503)
++..+.+ |.+.+++.-++.|++.+...+...++++|..+. ++.|..++.+.....+|..+++.+.+.+.
T Consensus 305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9998886 999999999999999999999999999999873 33478888888888888888887776554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.9e-09 Score=101.79 Aligned_cols=133 Identities=9% Similarity=0.027 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhhcc-cCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcC-
Q 010721 331 DGALASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG- 408 (503)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 408 (503)
.++.....+.++..++.+++|+++|| +|||+++.++.++..++.+++.+.. +...+. ......+.+.+
T Consensus 49 ~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~---------~~~~~~-~~~~l~g~g~g~ 118 (475)
T TIGR00924 49 QAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI---------YPDLIF-YGLGTIAVGSGL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc---------cHhHHH-HHHHHHHhcccc
Confidence 35577788889999999999999999 8999999999999888887776521 112222 22222333333
Q ss_pred ccccccccccccCCccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHH
Q 010721 409 AGPVTGLVIPELSSNRT---RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL 473 (503)
Q Consensus 409 ~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 473 (503)
..+...+++.+.+|+++ |+++.++.+...++|.+++|.+.+++.+..||+..|.+.++.++++.+
T Consensus 119 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 119 FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 34666778888887653 888999999999999999999999999999999999887765555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.9e-09 Score=99.82 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcC-cc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AG 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 410 (503)
.+...+...++..++.++.|+++||+|||+.+..+..+..++.++..+.. +...+.... +..+.+.+ ..
T Consensus 43 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~-~l~G~~~~~~~ 112 (401)
T PRK11043 43 VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE---------SAAQLLVLR-FVQAVGVCSAA 112 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc---------CHHHHHHHH-HHHHhhhHHHH
Confidence 44667788888999999999999999999999988887777776665421 122222222 22222222 22
Q ss_pred ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhh
Q 010721 411 PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 478 (503)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 478 (503)
+.....+.|.+|+++++...+..+....++..++|.+.+.+.+..||+..|++.+++.++..++.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 113 VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 34456678899998889999999988899999999999999999999998888877777666554433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=95.54 Aligned_cols=162 Identities=28% Similarity=0.460 Sum_probs=130.5
Q ss_pred HHHHHhhhhhhcccchhhHhHHHhhCCCCCc--hHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHH
Q 010721 93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNP--ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170 (503)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 170 (503)
....+...++........+.+..+++. +. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 85 (338)
T COG0477 8 ALAALLLGLDLGLLSPALPLLLSTLSL--SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLL 85 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHcCC--CchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence 334444446666777778888888876 54 47899999999999999999999999999998888888776666777
Q ss_pred HHhhhh--HHHHHHHHHHHHhhhhhhchhhhhhhhhcCCC-CCccchhhHHHH-HHHHHHHHHHHhhccCCCC--CchhH
Q 010721 171 SAQAHS--LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQV-GTCLGIITSLFLGIPAEDD--PHWWR 244 (503)
Q Consensus 171 ~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~ig~~~~~~l~~~--~~~wr 244 (503)
.++..+ .+.+++.|+++|++.+...+...+++.|++++ ++|+...+.... ...+|.++++.+++.+... .+ ||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 164 (338)
T COG0477 86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WR 164 (338)
T ss_pred HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hH
Confidence 777766 89999999999999999999999999999998 668888898888 5888888888777666544 33 99
Q ss_pred HHHHhhHHHHHHH
Q 010721 245 TMLYIASLPGFIL 257 (503)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (503)
+.|..........
T Consensus 165 ~~~~~~~~~~~~~ 177 (338)
T COG0477 165 AAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHHHH
Confidence 9776666555443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.3e-09 Score=100.42 Aligned_cols=172 Identities=9% Similarity=-0.114 Sum_probs=115.1
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
++++++.+++..-....++..+|.+.++ .. +.........+..+...+..+++|+++||+|+|+++.++.++..+..
T Consensus 254 ~Wllslly~~tFG~fvg~s~~lp~~~~~-~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 254 LWLLSLLYLATFGSFIGFSAGFAMLAKT-QF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS 330 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3444444444443344444455555544 22 22222233445567788899999999999999999999888777766
Q ss_pred HHHH-hh-----hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCC---------------------CCccchhhHHHHH
Q 010721 169 IISA-QA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT---------------------KYRGSLGTLCQVG 221 (503)
Q Consensus 169 ~~~~-~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~---------------------~~r~~~~~~~~~~ 221 (503)
.... .. .+++.+.+.-+...++.|........++.+++|+ ++-|.+.|+....
T Consensus 331 ~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~ 410 (462)
T PRK15034 331 ALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAI 410 (462)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHH
Confidence 4322 22 2566666666666666666666777778787774 1456788888899
Q ss_pred HHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc
Q 010721 222 TCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 222 ~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
..+|..+-|.+-+...+..+.+...|+...+..++++++.+.
T Consensus 411 G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 411 GAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999888888776666665555888999888888777666654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-08 Score=95.73 Aligned_cols=143 Identities=19% Similarity=0.133 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 411 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (503)
-+.+.+....+.+++.+..|++.||+|.|+++..+.++.+++.++..+.... ..+ .++.+=++.+.......|
T Consensus 75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~------~~~-~~~~~R~lqGl~~g~~~p 147 (466)
T KOG2532|consen 75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI------GFY-LLLVLRFLQGLGQGVLFP 147 (466)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh------cch-hhHHHHHHhHHHHhHHHh
Confidence 4466788899999999999999999999999999999999998888775532 112 222223332322233457
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcchhHhHHHHHHHHHHHHHhhccC
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET-FGVAPVYAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (503)
....+..+-.|+++|++..++..+..++|.+++-++.|.+.+. .||+..|++.+++.++..++.+++..+
T Consensus 148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 7888899999999999999999999999999999999999998 999999999999998888776666554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-08 Score=98.06 Aligned_cols=141 Identities=11% Similarity=-0.038 Sum_probs=111.1
Q ss_pred HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 010721 114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGV 193 (503)
Q Consensus 114 ~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 193 (503)
++.+|. ++.+.++..+.+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.+ .+..-++.|++.+.
T Consensus 287 ~~~~g~--s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~ 363 (438)
T PRK10133 287 EEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSI 363 (438)
T ss_pred hhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHH
Confidence 456788 999999999999999999999999999999999999999888877777766666543 34567789999999
Q ss_pred hchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHH
Q 010721 194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL 259 (503)
Q Consensus 194 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~ 259 (503)
.+|...+...+..+++ .+.+.++..+ ..+|..++|.+.+.+.+..++-|..|++..+..+..+.
T Consensus 364 i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 364 QYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999998764 6777887764 44677888888888777654257777765555444443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-09 Score=99.99 Aligned_cols=144 Identities=17% Similarity=0.087 Sum_probs=124.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 201 (503)
++...|.+.+...+.-++.-.+..++.+|+|.|+.++++.++..+=.++++++++.+.+.+.+.+.|+-.+........|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCccchhhH-HHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc-ccC
Q 010721 202 ISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVE 266 (503)
Q Consensus 202 i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~~ 266 (503)
+++.+|+|-.++...+ .+.+..+|.++.+.++|.+.+..| .+..|++.+.+.++..++..+ +++
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecC
Confidence 9999998877777766 478899999999999999999888 999999988887777666655 444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=98.12 Aligned_cols=125 Identities=8% Similarity=0.038 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcc-cCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcC-ccc
Q 010721 334 LASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGP 411 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 411 (503)
.....+.....+..+++|+++|| +|||+++.++.++..++.+.+.+... .... +.......+.+.+ ..|
T Consensus 54 ~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~--------~~~l-l~~~~~l~~ig~g~~~~ 124 (489)
T PRK10207 54 ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL--------KPDL-IFIALGTIAVGNGLFKA 124 (489)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc--------chhH-HHHHHHHHHhccccccC
Confidence 44455555666667789999999 99999999999999998888776321 1111 2122222333333 346
Q ss_pred cccccccccCCcc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHH
Q 010721 412 VTGLVIPELSSNR--TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGV 467 (503)
Q Consensus 412 ~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 467 (503)
...+++.|.+|++ +|+.++++.+...++|.+++|.+.|++.++.||++.|++.++.
T Consensus 125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 6778899999877 4578999999999999999999999999999999999875543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-06 Score=83.51 Aligned_cols=350 Identities=10% Similarity=-0.035 Sum_probs=184.0
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
...++...++...+.-+.....+.+..+...+ +-...+...-.-.+..++.++..|.+.||..|.+++-.+.+..-++.
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~-sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPG-SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 45677788888888888888888888877541 33334445555566677888899999999999998777665543332
Q ss_pred HHHH------hh--h----hHHHH---HHHHHHHHhhhhhh-chhhhhhhhhcC------CCCCccchhhHHHHHHHHHH
Q 010721 169 IISA------QA--H----SLDEM---LWGRFLVGLGIGVN-TVLVPIYISEVA------PTKYRGSLGTLCQVGTCLGI 226 (503)
Q Consensus 169 ~~~~------~~--~----~~~~l---~~~r~l~G~~~~~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~ 226 (503)
.+.+ +. + +-+.. ++.-.+.|.-.-.. .....+.=.||. +++.+.+.++...-.--+..
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 2222 11 1 01222 11122222211111 111122224553 23445667777777778889
Q ss_pred HHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccc-----cCChHHHHhcCChHHHHHH--HHHHcCCcchHHHHHH
Q 010721 227 ITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT-----VESPRWLCKGGMLNDAKAV--IANLWGESEINKAIEE 299 (503)
Q Consensus 227 ~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 299 (503)
+++|++.|.+....+ .+....+.++..++.+++=+++ ...|. +..+++.++.... ..+.............
T Consensus 163 llaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (432)
T PF06963_consen 163 LLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEESSSESSSDPSILKR 240 (432)
T ss_pred HHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCccccccccccccccccchhhHHHH
Confidence 999999999988777 7777777666666654333221 12222 1111111110000 0000000000000011
Q ss_pred HHHHHHhcCCCCcccchhhhccCccccchhhh--------------------------HHHHHHHHHHHHHHHHHhHHHh
Q 010721 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGD--------------------------GALASLLVGVTNFAGALCASYL 353 (503)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~g~l 353 (503)
....... ....|+..++.+.+...+... .+.+-....+.++.+.++..++
T Consensus 241 ~~~~~~~----~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l 316 (432)
T PF06963_consen 241 LWNPLRT----IIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWL 316 (432)
T ss_pred HHHHHHH----HhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000 012333334333222211110 3456667778888999999999
Q ss_pred hcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHh-cCccccccccccccCCcccchhhHHH
Q 010721 354 MDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGF 432 (503)
Q Consensus 354 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~ 432 (503)
.+|+|..+.-.++.....++..+.......+..+........+...+...=++ .++-....-+++|.+|+++||+..|+
T Consensus 317 ~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gv 396 (432)
T PF06963_consen 317 MKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGV 396 (432)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHH
Confidence 99999888777776655544444433332221110011111111111111111 12223455678899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 010721 433 SFSVHWVCNFLVG 445 (503)
Q Consensus 433 ~~~~~~~g~~~~~ 445 (503)
-+..+++...+.-
T Consensus 397 q~sl~~lf~ll~~ 409 (432)
T PF06963_consen 397 QNSLQSLFELLSF 409 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=100.26 Aligned_cols=140 Identities=14% Similarity=0.041 Sum_probs=102.5
Q ss_pred HHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHh--
Q 010721 96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ-- 173 (503)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-- 173 (503)
.++............+.+.+...- +....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+
T Consensus 240 ~~~~~~~~~~~~~~~~y~~~y~~~--~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~ 317 (473)
T PRK10429 240 ALAYNIASNIINGFAIYYFTYVIG--DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG 317 (473)
T ss_pred HHHHHHHHHHHhhheeeEEEEECC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444455454432 4556677777777899999999999999999999999888877766655432
Q ss_pred ---hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCC-------CCCccchhhHHHHHHHHHHHHHHHhhccCC
Q 010721 174 ---AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 174 ---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 237 (503)
.++.+.+++.-++.|++.+...+...++++|..+ +++.|..++......-+|..+++.+.+++.
T Consensus 318 ~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 318 LAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778889999999999999999999966 233455888888888888888887776654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=96.45 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccc
Q 010721 336 SLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL 415 (503)
Q Consensus 336 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (503)
......+.++.-++.+++++|+|+-+++..+..+..+=++.+.... +.|..+..-.+-....+. .+....+
T Consensus 412 ~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--------n~W~vLPieilqgit~al-iWaa~~s 482 (618)
T KOG3762|consen 412 SALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--------NPWMVLPIEILQGITHAL-IWAAIIS 482 (618)
T ss_pred hhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--------CchheeeHHHHHHHHHHH-HHHHHHH
Confidence 3344455667778889999999999999999888888777776632 233333333333333333 3334568
Q ss_pred cccccCCcccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHh
Q 010721 416 VIPELSSNRTRGKIMGFSFSVHW-VCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 416 ~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 477 (503)
|++...|++.+.++.|+...... +|-.+|++++|.+.+.+|.+..|.++++.+++..++...
T Consensus 483 Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 483 YASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998764 888899999999999999999998888877776665443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.6e-08 Score=94.56 Aligned_cols=161 Identities=11% Similarity=-0.158 Sum_probs=115.3
Q ss_pred HHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (503)
.+++.++...........++.+.++.+.+.+....+...+.+..+..+|.++++++.||+++|+++.++.++..+..++.
T Consensus 237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~ 316 (410)
T TIGR00885 237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGS 316 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333445566665655433355555667777778889999999999999999999999999999988888
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC-----chhHHH
Q 010721 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-----HWWRTM 246 (503)
Q Consensus 172 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~-----~~wr~~ 246 (503)
.+.++... +++-++.|++.+..+|...++..+..+++.+ .+.+...++ .+|..+.|++.|.+.+.. ++.+..
T Consensus 317 ~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~-~~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~ 393 (410)
T TIGR00885 317 IFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTK-YGAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTS 393 (410)
T ss_pred HHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchH
Confidence 88777554 5677888899999999999999999986643 333333333 399999999999998843 236777
Q ss_pred HHhhHHHHH
Q 010721 247 LYIASLPGF 255 (503)
Q Consensus 247 ~~~~~~~~~ 255 (503)
|++..+.-+
T Consensus 394 ~~~~~~~~~ 402 (410)
T TIGR00885 394 FILPLLCFA 402 (410)
T ss_pred HHHHHHHHH
Confidence 776444333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-06 Score=78.85 Aligned_cols=357 Identities=12% Similarity=0.034 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhh-----hhcchHHHHH-H
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-----KLGCRRTFQI-D 160 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~ 160 (503)
..+..+.+.+.+.+...+... .+|.+.+.=|. |....+. .+..+..+ ..-++|.++.| |+||||..++ +
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~v--Syt~~a~-fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~ 105 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGV--SYTSQAI-FSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPC 105 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCc--chhhhhh-hhhhhhHH-HHHHHHHhhhHHHHHHhhccccceeeeh
Confidence 346777788889999998888 89999886676 5544432 22222222 34678999999 9999997665 5
Q ss_pred hHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHH
Q 010721 161 TIPLILGAIISAQA-----------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITS 229 (503)
Q Consensus 161 ~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig 229 (503)
..+.+..+.+.+.- ++...+...-++.-+.++.--.+.-.+.-.+..+++.|-+......+.+.|.+++
T Consensus 106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG 185 (510)
T ss_pred HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence 55555555555432 3444444455677777777777777888888888888888888778888887777
Q ss_pred HHhhccCCCC-------Cc-----h---hHHHHHhhHHHHHHHHHHhccccCChHHHHh---cCChHHHHHHHHHHcCCc
Q 010721 230 LFLGIPAEDD-------PH-----W---WRTMLYIASLPGFILALGMQFTVESPRWLCK---GGMLNDAKAVIANLWGES 291 (503)
Q Consensus 230 ~~~~~~l~~~-------~~-----~---wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 291 (503)
..+--.+... .+ + -....++.+.+.++.-.+..+..+++..... ..+.++.-+.+.+..+.+
T Consensus 186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk 265 (510)
T KOG3574|consen 186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLK 265 (510)
T ss_pred cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCc
Confidence 6654444320 00 0 1122334444444444444444433322211 122333444444544444
Q ss_pred chHHHHHHHHHHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCC--chH------H
Q 010721 292 EINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGR--QKL------L 363 (503)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~~------~ 363 (503)
.............-.........-..+... .+..-- .+...+..+...++.++...|+.. |++ +
T Consensus 266 ~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~-------Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~ 337 (510)
T KOG3574|consen 266 SVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEE-------LALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAV 337 (510)
T ss_pred cHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhH-------heeeeeehhhHHHhhhhhheeecCCCCcchHHHHhh
Confidence 443332222111111111100111111111 111110 112224444555555555555422 211 1
Q ss_pred HhhHHHHHHHHHHHHHHhcCCC-CcchhhHHHHHHH--HHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHH
Q 010721 364 IGSYLGMAISMLLVVGATSLPL-DEDFSHNLSILGT--LFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVC 440 (503)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 440 (503)
..-.....+...+....+.... +........++.+ ..+..++.........+..+++.++...|+.+.+.|+..++|
T Consensus 338 ~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLG 417 (510)
T KOG3574|consen 338 PYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLG 417 (510)
T ss_pred hHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhc
Confidence 1111222222222222222221 1111111222222 122222222222334566788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 010721 441 NFLVGLFFLDLVETFG 456 (503)
Q Consensus 441 ~~~~~~~~g~l~~~~g 456 (503)
+-.-..+..++.|.++
T Consensus 418 g~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 418 GNWPGTVALWLADGLT 433 (510)
T ss_pred CCcHHHHHHHhcccCc
Confidence 9988888888888653
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-07 Score=83.26 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=128.0
Q ss_pred chhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 010721 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185 (503)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 185 (503)
-.-+|.+..|-|+ |..+.|++.+...+.....++..-.+.+|. .+|+..+....++.++.+.+.+.+....+.. -+
T Consensus 228 ~~WLP~ili~~G~--sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ 304 (395)
T COG2807 228 IGWLPAILIDRGL--SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-AL 304 (395)
T ss_pred HHHHHHHHHHcCC--CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HH
Confidence 3457899999999 999999999999999999999999999965 6677788888888888888888765544444 49
Q ss_pred HHHhhhhhhchhhhhhhhhcCCCCC-ccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc
Q 010721 186 LVGLGIGVNTVLVPIYISEVAPTKY-RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 186 l~G~~~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
+.|+|.|..++.+...+.+..++.+ -+...++.|....+=..+||.+.|++-+..++|+..+...+...+++.+.-+.
T Consensus 305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998886554 45666777777777788899999999998888999999888877777665544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.5e-08 Score=94.18 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 010721 124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (503)
Q Consensus 124 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 201 (503)
...+.+.....++..++.+++++++||+|+|+.+.++.++.++..+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777888899999999999999999999888766654443333 3577778888899999999999999999
Q ss_pred hhhcCCC-------CCccchhhHHHHHHHHHHHHHHHhhccCCC
Q 010721 202 ISEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (503)
Q Consensus 202 i~~~~~~-------~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 238 (503)
++|..+. +..|...+.......+|..+|+.+++.+.+
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998862 223566788888888998888888776544
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=70.10 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=75.4
Q ss_pred hhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHH
Q 010721 99 FGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178 (503)
Q Consensus 99 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 178 (503)
.++.+..++|.+|.+++|.++ |..+.|++.+..++||.+|.+...++.++..+++.+..+.++..+..+.+++.++.+
T Consensus 4 mGigRFayTplLP~M~~~~~l--s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGL--SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 567888999999999999999 999999999999999999999999999998889999999999999999999998877
Q ss_pred HHH
Q 010721 179 EML 181 (503)
Q Consensus 179 ~l~ 181 (503)
.+.
T Consensus 82 ~w~ 84 (85)
T PF06779_consen 82 LWS 84 (85)
T ss_pred HHh
Confidence 653
|
Note that many members are hypothetical proteins. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=95.31 Aligned_cols=138 Identities=21% Similarity=0.128 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 411 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (503)
.....+++.++.++|.++.|+++||+|||++++++.++..++.++.++. .+...+...-++.+.+..+...
T Consensus 120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---------~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---------PNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---------CcHHHHHHHHHHHHhhccchhH
Confidence 4566788899999999999999999999999999999999998877773 3344445555555555566667
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCC
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVET 482 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (503)
....+..|.+++++|+.+..+ ......++.+++.+.+++.. +|++.+++.....++..++ +++.+|.
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 788899999999999999999 88888999999999999888 7888888777777666554 3444453
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.9e-07 Score=89.78 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=123.4
Q ss_pred chhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHhHHHHHHHHHHHhhhh--------H
Q 010721 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLILGAIISAQAHS--------L 177 (503)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~ 177 (503)
......+.+.+|. ++..+..+...+....-+..+++|.++|+ +|+++.++++.++..+|.++.+++.. .
T Consensus 8 aiLvlYl~~~lg~--~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 8 TILVLYFLNFLGF--SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 3344566677888 77778888888888888999999999996 69999999999999999988876521 2
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCC---ccchhhHHHHHHHHHHHHHHHhhccCCCC-------CchhHHHH
Q 010721 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY---RGSLGTLCQVGTCLGIITSLFLGIPAEDD-------PHWWRTML 247 (503)
Q Consensus 178 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~ig~~~~~~l~~~-------~~~wr~~~ 247 (503)
...+++-.+..+|.|..-+...+...|.+++++ |...+.++..+.++|.++++++..++.+. .+ |...|
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF 164 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAF 164 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHH
Confidence 346677888999999999999999999998653 56788888999999999999888777532 24 99999
Q ss_pred HhhHHHHHHHHHHhc
Q 010721 248 YIASLPGFILALGMQ 262 (503)
Q Consensus 248 ~~~~~~~~~~~~~~~ 262 (503)
.+.++..++.+++..
T Consensus 165 ~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 165 GVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888777765543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-07 Score=79.37 Aligned_cols=352 Identities=16% Similarity=0.122 Sum_probs=176.0
Q ss_pred cccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHH
Q 010721 104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183 (503)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (503)
...+|.+-.+-+.++. ...++|.+.-..+-..++...+.|-++|+-|||+.-+.-++.+.+++ +.-.++.|-.++++
T Consensus 54 WLQgPYvYyLYstYgF--gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVG 130 (454)
T KOG4332|consen 54 WLQGPYVYYLYSTYGF--GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVG 130 (454)
T ss_pred hhcCceeeeeehhcCc--cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeeh
Confidence 3445555555667777 77778888888888888899999999999999997665555554443 23456899999999
Q ss_pred HHHHHhhhhhhchhhhhh-hhhcCCCCCccchhhHHH--------HHHHHHHHHHHHhhccCCCCCc-hhHHHHHhhHHH
Q 010721 184 RFLVGLGIGVNTVLVPIY-ISEVAPTKYRGSLGTLCQ--------VGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLP 253 (503)
Q Consensus 184 r~l~G~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~ig~~~~~~l~~~~~-~wr~~~~~~~~~ 253 (503)
|.+.|+..+..+.+--++ +.|..+ +|+.---+.. .+..+=.+++.+.+..+.+..+ |--.+|-..+.+
T Consensus 131 R~LGGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacf 208 (454)
T KOG4332|consen 131 RVLGGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACF 208 (454)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 999999999888877665 455542 3443222222 2223333444444444443222 133444443333
Q ss_pred HHHHHHHhcc-ccCChHHHHhcCChHHHHHHHH-------HHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCccc
Q 010721 254 GFILALGMQF-TVESPRWLCKGGMLNDAKAVIA-------NLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325 (503)
Q Consensus 254 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (503)
..+...+.+- .-| .-++..+.+.... .+..++.+ .....+...+..........|...+....-.
T Consensus 209 LaigmAvil~~W~E------Nygdps~~kdlltqf~gaa~aiaSD~ki-~LLG~iqsLFE~smytFVFLWTPaLspn~e~ 281 (454)
T KOG4332|consen 209 LAIGMAVILSSWSE------NYGDPSENKDLLTQFKGAARAIASDEKI-ALLGAIQSLFEGSMYTFVFLWTPALSPNDEE 281 (454)
T ss_pred HHHHHHHHHhhhhh------ccCChhhhHHHHHHhhHhHHHHhcchHH-HHHHHHHHHHhhhhheeeeeecccCCCCccc
Confidence 3332222111 111 1111111111111 11111111 1111111112221122223344444311111
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCc--hHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Q 010721 326 VAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQ--KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIF 403 (503)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (503)
.. -+.+.+-+.+..++|+-+..++..|-..| ..+.+.+++.++.+.+......... ........++..+++-.
T Consensus 282 iP----hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP-~kes~~~s~i~F~~~E~ 356 (454)
T KOG4332|consen 282 IP----HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSP-SKESPSESLIGFCLFEA 356 (454)
T ss_pred CC----chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCC-CcCCchHHHHHHHHHHH
Confidence 11 22445556667777777776666554333 3455555555555554444333221 12233334444444444
Q ss_pred HHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcchhHhHHHHHHHHHHHH
Q 010721 404 TFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE--TFGVAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~~~~~~~~~~~~~~~~ 475 (503)
+.+. ++|...-+-.+..|.+.|.+.+-.+..--++..-++- ...-.+ ..+.+..|-++.++..+..+..
T Consensus 357 cvGl-fwPSimkmRsqyIPEearstimNfFRvPLnifvClvL--ynlh~~~~p~~tr~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 357 CVGL-FWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVL--YNLHVDAFPTTTRNMFGICSAFLFVASILQ 427 (454)
T ss_pred HHhh-cchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhh--eecccccCccccchhhhhhHHHHHHHHHHH
Confidence 4433 3455566677888988887766554443333221111 000011 1234566777777666655543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=91.80 Aligned_cols=137 Identities=10% Similarity=0.061 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHhh----hhhhhhhcchHHHHHHhHHHHHHHHHHHhhhh---------HHHHHHHHHHHHhhhh
Q 010721 126 EGLVVSIFIAGAFVGSISS----GSLADKLGCRRTFQIDTIPLILGAIISAQAHS---------LDEMLWGRFLVGLGIG 192 (503)
Q Consensus 126 ~g~~~s~~~~~~~i~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~~ 192 (503)
.++..++..+...+..++. +++.||++.++.+.+|.++.+++.+..+++.+ .+++++..++.|+|+.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5677777887777776666 66666666778899999999999988887765 4678889999999999
Q ss_pred hhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC-----C----CCchhHHHHHhhHHHHHHHHHHhc
Q 010721 193 VNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-----D----DPHWWRTMLYIASLPGFILALGMQ 262 (503)
Q Consensus 193 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~-----~----~~~~wr~~~~~~~~~~~~~~~~~~ 262 (503)
...|...+++.+..|++.||+++|.+..+..+|..++..+..... . ..++..+.|...++.+++..++.+
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888888877764221 0 111256777777766655544333
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-08 Score=95.08 Aligned_cols=169 Identities=18% Similarity=0.086 Sum_probs=145.0
Q ss_pred HHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (503)
..+..++.++..+.+...+=.-.||.+- .+...|........|-++.-++.+++..++|+-+++.+++.+..+=.+..
T Consensus 376 ff~~av~mG~g~~lv~tFLfWHled~~~--~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~ 453 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFLFWHLEDLGG--IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYY 453 (618)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCC--cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHH
Confidence 3344455555555555555566788876 77778888888889999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHH-HHHHHHHHHHHHhhccCCCCCchhHHHHHhh
Q 010721 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYIA 250 (503)
Q Consensus 172 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~ 250 (503)
+..+|.|..+..-+++|+..+..+.++.+|+++..|++-|..+.++.+ ...++|--+|.++||.+.+..+ =|..|.+.
T Consensus 454 S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~ 532 (618)
T KOG3762|consen 454 SYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIF 532 (618)
T ss_pred HHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 5678999999999999999988 88889888
Q ss_pred HHHHHHHHHHhcc
Q 010721 251 SLPGFILALGMQF 263 (503)
Q Consensus 251 ~~~~~~~~~~~~~ 263 (503)
++.+++.++....
T Consensus 533 giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 533 GIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777655543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-05 Score=74.74 Aligned_cols=148 Identities=11% Similarity=-0.019 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCC---CCchHHHHHHHHHHHHHHHH-HHhhhhhhhhhcchHHHHHHh
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE---GNPILEGLVVSIFIAGAFVG-SISSGSLADKLGCRRTFQIDT 161 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~g~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~ 161 (503)
++.++...+..|+..+..+. +-.+.+.+.++ .+...+.++-+...+..++. .++.+++++|++|++++-+..
T Consensus 6 ~~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~ 81 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence 34455555555655555543 45566666552 23356888888887877776 899999999999999988877
Q ss_pred HHHHHHHHHHHhh----h---------------------------hHHHHHHHHHHHHhhhhhhch-hhhhhhhhcCCCC
Q 010721 162 IPLILGAIISAQA----H---------------------------SLDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTK 209 (503)
Q Consensus 162 ~~~~~~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~ 209 (503)
..+....+++++. + +.|...+.-....+....... .-..+++|.++.+
T Consensus 82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~ 161 (472)
T TIGR00769 82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID 161 (472)
T ss_pred HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 7777666666654 1 133333444555555555555 6678899999999
Q ss_pred CccchhhHHHHHHHHHHHHHHHhhccCC
Q 010721 210 YRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 210 ~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 237 (503)
|-.|..+++..+.++|.++++.+..++.
T Consensus 162 qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 162 EAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.6e-07 Score=85.47 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=112.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+...++..++.....+..+.....+.+ +.++.++.+..+.......+.+++.+++.++.+|+|+|+++.++.++..++.
T Consensus 238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~-y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~ 316 (467)
T COG2211 238 LLLLLLMNLLLFIAFNIRGSIMVYYVT-YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGY 316 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEE-EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 334444555555555555555544443 3455577777888888888888889999999999999999999999999999
Q ss_pred HHHHhhh--hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCC-------CCCccchhhHHHHHHHHHHHHHHHhhccC
Q 010721 169 IISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPA 236 (503)
Q Consensus 169 ~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~~~~~l 236 (503)
++.-+.+ +.+.+++..++.++|.+...+...++++|..+ ++.-|...+......=+|..++..+.++.
T Consensus 317 ~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 317 LLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred HHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988875 78889999999999999999999999988875 22236677777777777777777655444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.9e-08 Score=94.48 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=118.1
Q ss_pred HhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh----------hhHHHHHHHH
Q 010721 115 KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA----------HSLDEMLWGR 184 (503)
Q Consensus 115 ~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r 184 (503)
+.+|. ++.+.|++.+...++.+++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-
T Consensus 281 ~~lG~--s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 281 QCLPG--GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred ccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 45677 99999999999999999999999999999999999999999999888664311 3444555667
Q ss_pred HHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc----h--hHHHHH-hhHHHHHHH
Q 010721 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH----W--WRTMLY-IASLPGFIL 257 (503)
Q Consensus 185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~----~--wr~~~~-~~~~~~~~~ 257 (503)
++.+++.+..+.....++.+..|+++++...++.+...++|..+++.+++.+.+..| . .++... +..+..++.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~ 438 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP 438 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998887766443 0 222222 233333444
Q ss_pred HHHhccccC
Q 010721 258 ALGMQFTVE 266 (503)
Q Consensus 258 ~~~~~~~~~ 266 (503)
+...+++|+
T Consensus 439 l~~~~llP~ 447 (468)
T TIGR00788 439 LPLLHLLPR 447 (468)
T ss_pred HHHHHhCCC
Confidence 444456775
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-07 Score=85.83 Aligned_cols=140 Identities=13% Similarity=0.001 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 411 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (503)
.+.+...+..+..+..+..|++.||+|.|+++.++.+...+..+++.+.. ....+.+.-++.+.......
T Consensus 64 ~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~---------Sl~~L~i~R~llGvaEA~~~- 133 (511)
T TIGR00806 64 TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT---------SVWHMQLMEVFYSVTMAARI- 133 (511)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-
Confidence 34667788889999999999999999999999999998888888887732 22222222222222222223
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhH--HHHHHHHHHHHHhhccCC
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGF--GGVSLLSALFAYYFIVET 482 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~ 482 (503)
....++...+|+++|+++.|+.++...+|.++++++.++ ...+||+....+. .......++++.+++|..
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 677888999999999999999999999999999999999 5567876543322 222333333344566643
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-07 Score=91.65 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccc
Q 010721 334 LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVT 413 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (503)
++.....+...++.++.|.++|.+|||...+.+.++..++.++..... ....++....+.+.+.+...+.
T Consensus 82 w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~----------~~~~~iag~~l~GvgaG~~~~~ 151 (599)
T PF06609_consen 82 WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ----------NMNTFIAGMVLYGVGAGVQELA 151 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC----------cHHHHHHHHHHHHHhhHHHHHH
Confidence 455667778888999999999999999999999999999988876522 2222222333333344444455
Q ss_pred cccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhc
Q 010721 414 GLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFI 479 (503)
Q Consensus 414 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 479 (503)
...++|..|.+.|+.+.++.....-+...++|.+...+..+.+|++.|++..++..++.++.+++.
T Consensus 152 ~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 152 ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 566899999999988887776655455556677766666667899999988887777666555444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=95.74 Aligned_cols=147 Identities=15% Similarity=0.062 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCC----C-------------------c---
Q 010721 334 LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL----D-------------------E--- 387 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~--- 387 (503)
++.+.+.++.+++.++.+++.||.+||+.+.++.++.+++.++..+...... . .
T Consensus 72 ~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~ 151 (633)
T TIGR00805 72 LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQ 151 (633)
T ss_pred eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCC
Confidence 4466788888999999999999999999999999999999888766421100 0 0
Q ss_pred -------------ch--hhHHHHHHHHHHHHHHh-cCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010721 388 -------------DF--SHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL 451 (503)
Q Consensus 388 -------------~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 451 (503)
.. ...+.++.+.-+..+.+ ....++..+++.|.+|+++|+.+.|+.+....+|..+++.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l 231 (633)
T TIGR00805 152 ALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFC 231 (633)
T ss_pred CccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 00 00122222223333333 334577889999999999999999999999999999999999998
Q ss_pred HHHc---------------------C-CcchhHhHHHHHHHHHHHHHhhccC
Q 010721 452 VETF---------------------G-VAPVYAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 452 ~~~~---------------------g-~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (503)
.+.+ | |+..|++.+++.++.++.. +++++
T Consensus 232 ~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~ 282 (633)
T TIGR00805 232 LQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPK 282 (633)
T ss_pred HhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCcc
Confidence 8643 1 4455766676666655543 34444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.2e-07 Score=83.30 Aligned_cols=131 Identities=18% Similarity=0.056 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcC
Q 010721 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206 (503)
Q Consensus 127 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 206 (503)
+.+.-+-.+...+..+.+-+..+|+..+.=+.+..+++.++.++.+++++.+.=+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555566667777778888899988776677777888999999999999999999999999999998888887744 56
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc-hhHHHHHhhHHHHHHHHHHhcc
Q 010721 207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 207 ~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~-~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
++ ...+.+..+.+.+.++|+..-..+.. .+ .-|..+++...+.++..+.+++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~ 193 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFF 193 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 35788888888888888877655554 33 1577777777666666555554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.5e-07 Score=82.39 Aligned_cols=166 Identities=18% Similarity=0.162 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 165 (503)
+.+..-.++.|+..-.....+..++.+.+| .|+ +..+.+...+.+..+.++|.+++.++..|+...|.+.+..++..
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~--~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~i 313 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGL--NEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAI 313 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 346666777777777777777788887777 666 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHH
Q 010721 166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT 245 (503)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~ 245 (503)
+-++..+++++...+ .+-++.|++.+..+|...+...+..+ + .....+..-....+|..+-|.+.|++.+..+ -+.
T Consensus 314 ll~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~ 389 (422)
T COG0738 314 LLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQL 389 (422)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhh-hHH
Confidence 999999999995544 45678899999999999999999998 3 3444455556677888999999999999887 666
Q ss_pred HHHhhHHHHHHHH
Q 010721 246 MLYIASLPGFILA 258 (503)
Q Consensus 246 ~~~~~~~~~~~~~ 258 (503)
.+.....++.+.+
T Consensus 390 ~~~~~pllc~lyV 402 (422)
T COG0738 390 TFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHHHH
Confidence 6664444444444
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.6e-07 Score=85.98 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhc----ccCCchHHHhh-HHHHHHHHHHHHHHhcCCC----C-cchhhHH--HHHHHH
Q 010721 332 GALASLLVGVTNFAGALCASYLMD----KEGRQKLLIGS-YLGMAISMLLVVGATSLPL----D-EDFSHNL--SILGTL 399 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~-~~~~~~~--~~~~~~ 399 (503)
.+....+..+.+++..++.|+++| |+|||+.++.. .+...++.+++.+...... . +...... ......
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~ 120 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVG 120 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHH
Confidence 446677788899999999999999 59999988775 4444455455444221100 0 0000111 111111
Q ss_pred HHHHHHhcC-ccccccccccccCCcccc--hhhHHHHHHHHHHHHHHHHHHHHHH--HHHc-------------CCcchh
Q 010721 400 FYIFTFAIG-AGPVTGLVIPELSSNRTR--GKIMGFSFSVHWVCNFLVGLFFLDL--VETF-------------GVAPVY 461 (503)
Q Consensus 400 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~~~~~~g~l--~~~~-------------g~~~~~ 461 (503)
+...-+... ..+...+++.|..|+++| +.+.++.+...++|+.+++.+.+.. .+.. +.+..|
T Consensus 121 ~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F 200 (477)
T TIGR01301 121 FWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCF 200 (477)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHH
Confidence 111111211 233456889999998755 6799999999999999999988765 2222 345577
Q ss_pred HhHHHHHHHHHHHHHhhccCCC
Q 010721 462 AGFGGVSLLSALFAYYFIVETK 483 (503)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~ 483 (503)
++.+++.++..++..+..+|..
T Consensus 201 ~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 201 LIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHeeeeeccC
Confidence 7777777777777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.2e-07 Score=89.15 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCc-cc
Q 010721 333 ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GP 411 (503)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 411 (503)
+++.+...++..++.++.|+++|++|||+.++++.+...++.++..+.. ....+.+.=+..+++.+. ..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----------~~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP----------SWYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHhccchhhhhh
Confidence 5778889999999999999999999999999999999999999988743 222333333333333333 35
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcchhHhHHHHHHHHHHHHHhhccCC
Q 010721 412 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF--GVAPVYAGFGGVSLLSALFAYYFIVET 482 (503)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (503)
+...+.+|..|++.||...++......+|..++ ++.+....+. +|+..+.+..+.+++..+. .++.||.
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 567889999999999999999999998777776 6677666654 7887777766666666665 5666654
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-06 Score=69.71 Aligned_cols=108 Identities=10% Similarity=0.058 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCC
Q 010721 128 LVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP 207 (503)
Q Consensus 128 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 207 (503)
.-.++.+....+++++...+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+++...++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 45666777778888999999999999999999999988655554 45788899999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhccC
Q 010721 208 TKYRGSLGTLCQVGTCLGIITSLFLGIPA 236 (503)
Q Consensus 208 ~~~r~~~~~~~~~~~~~G~~ig~~~~~~l 236 (503)
++++++..+++......+.++|.++...+
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888776544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-06 Score=83.39 Aligned_cols=115 Identities=15% Similarity=0.020 Sum_probs=77.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhchhhh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVLVP 199 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~ 199 (503)
++...+.+.+.+.++.+++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456778888899999999999999999999988765555444444433332 233445556777888877777777
Q ss_pred hhhhhcCC-------CCCccchhhHHHHHHHHHHHHHHHhhccC
Q 010721 200 IYISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPA 236 (503)
Q Consensus 200 ~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~~~~~l 236 (503)
+++.|..+ ++..|..++......-+|..+++.+++.+
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887766 22234545666666777777776665444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.6e-08 Score=89.01 Aligned_cols=179 Identities=15% Similarity=0.037 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHH------HHHHH-HHHHHHHHHHHhhhhhhhhhcchHHHHH
Q 010721 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILE------GLVVS-IFIAGAFVGSISSGSLADKLGCRRTFQI 159 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------g~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~l~~ 159 (503)
+.++..+..+|+..+.....+.....+.+.++...+.... ..... +-..++..|-.+...+.|+.|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4567777778887777777777778888888773222211 11111 1222233366677889999999999999
Q ss_pred HhHHHHHHHHHHHhhhhH----HHHHH----HHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHH
Q 010721 160 DTIPLILGAIISAQAHSL----DEMLW----GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF 231 (503)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~----~~l~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 231 (503)
|.+++.+..+..+...|. ..+++ ..++.-+| .......+-+|.+|.+-|+..-|+..+..-+|.++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 999999999999887661 12222 23333333 33445556799999999999999999999999999999
Q ss_pred hhccCCC-----CCchhHHHHHhhHHHHHHHHHHhccccCChH
Q 010721 232 LGIPAED-----DPHWWRTMLYIASLPGFILALGMQFTVESPR 269 (503)
Q Consensus 232 ~~~~l~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (503)
.-.++.+ ..+ -|+.|++.+.+.++..+..+++||+..
T Consensus 461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecccc
Confidence 9888887 555 899999999999999999999998754
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=85.03 Aligned_cols=143 Identities=16% Similarity=0.181 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcccc
Q 010721 333 ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPV 412 (503)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (503)
+...+++.++.+++.+.++++.||++..+.+....++..+..++.... .+...+++.-++.+.+-.+..|.
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~---------~s~~~~ialr~llGl~es~~wP~ 154 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV---------HSFPGLIALRFLLGLFESGGWPG 154 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHhcccchH
Confidence 356778899999999999999999995555554444443333333221 33445556666667777777888
Q ss_pred ccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH------HcCCcchhHhHHHHHHHHHHHHHhhccCCCC
Q 010721 413 TGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETKG 484 (503)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (503)
...++...+.+++|+..+|+.++..++|+++|+.+...+.. ..||++.|++-+++.++.++++++++|+...
T Consensus 155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 88999999999999999999999999999999999988643 4679999999999999999988888876543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.5e-07 Score=84.87 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcc-cCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (503)
+......+....-+..+++||++|| +|+|+.++.+.+++.++.+++..... .....+.....+ ...+.|..
T Consensus 63 A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~-------~~~~gl~i~L~~-I~iG~Gl~ 134 (498)
T COG3104 63 ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV-------SGPGGLYIGLAL-IIVGTGLF 134 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc-------ccccHHHHHHHH-HHhccccc
Confidence 3344555566666788899999999 69999999999999999999877320 111222222222 23444443
Q ss_pred -ccccccccccCCcc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhh
Q 010721 411 -PVTGLVIPELSSNR--TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 478 (503)
Q Consensus 411 -~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 478 (503)
+....++.|.+|++ +|-.++++.+...++|+.++|.+.+++.++.||...|...++-+.++.+..++.
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 66778888988763 478889999999999999999999999999999999988877777776655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-09 Score=104.26 Aligned_cols=159 Identities=19% Similarity=0.088 Sum_probs=103.2
Q ss_pred ccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHH--h--h-hh---
Q 010721 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA--Q--A-HS--- 176 (503)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~-~~--- 176 (503)
......+.+.++.+. +.. -+......+...++.++...+.||+|||++++.+.++.++..+..+ . . ++
T Consensus 271 ~~~~~~~~i~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (451)
T PF00083_consen 271 FIFYYSPSIFENAGI--SNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSW 346 (451)
T ss_pred ccccccccccccccc--ccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 334445677777777 333 1222233344556777778999999999999999998888877775 1 1 11
Q ss_pred --HHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHH
Q 010721 177 --LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPG 254 (503)
Q Consensus 177 --~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~ 254 (503)
+..+.......-.......+....+..|.+|.+.|+++.++......++.++++.+...+.+..+ -...+++.+.++
T Consensus 347 ~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~ 425 (451)
T PF00083_consen 347 WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGVC 425 (451)
T ss_pred cccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHHH
Confidence 22222222221122223456666788999999999999999999888999999888877776554 234455544444
Q ss_pred HHH-HHHhccccCCh
Q 010721 255 FIL-ALGMQFTVESP 268 (503)
Q Consensus 255 ~~~-~~~~~~~~~~~ 268 (503)
++. ++..+++||+.
T Consensus 426 ~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 426 LIAIIFVYFFLPETK 440 (451)
T ss_pred HHHHhheeEEEeeCC
Confidence 444 45556799974
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-05 Score=74.64 Aligned_cols=153 Identities=17% Similarity=0.141 Sum_probs=124.2
Q ss_pred hhh-HhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhh-hhcchHHHHHHhHHHHHHHHHHHhh---hhHHHHHH
Q 010721 108 GPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-KLGCRRTFQIDTIPLILGAIISAQA---HSLDEMLW 182 (503)
Q Consensus 108 ~~~-~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~ 182 (503)
.++ |+=.+-||+ +..+...+.+....|..++-...|++.. |.++|+.-.+|+.+..++..+..++ .+.+.+..
T Consensus 229 ~iLEPygg~Vfgm--sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~ 306 (403)
T PF03209_consen 229 VILEPYGGEVFGM--SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRP 306 (403)
T ss_pred HHcCCchhHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 344 444677888 8889999999999999999999999888 6788888888888887777665544 67888999
Q ss_pred HHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC---------CCchhHHHHHhhHHH
Q 010721 183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED---------DPHWWRTMLYIASLP 253 (503)
Q Consensus 183 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~---------~~~~wr~~~~~~~~~ 253 (503)
.-++.|++.|.......+...|...+++.|..+|.+.....++..+|.++++.+.+ ....|-..|.+.++.
T Consensus 307 ~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~l 386 (403)
T PF03209_consen 307 GVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVL 386 (403)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888888875543 112277778887777
Q ss_pred HHHHHHHhc
Q 010721 254 GFILALGMQ 262 (503)
Q Consensus 254 ~~~~~~~~~ 262 (503)
.++.+++..
T Consensus 387 l~~a~~ll~ 395 (403)
T PF03209_consen 387 LLAALVLLG 395 (403)
T ss_pred HHHHHHHHH
Confidence 666655443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.3e-06 Score=83.04 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=86.7
Q ss_pred HHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCc-cccccccccccCCc
Q 010721 345 AGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSN 423 (503)
Q Consensus 345 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 423 (503)
...++.|++.||+|+|+++.++.++..++.+++.+..... .....+.+.+.....+.+.+. .+.....+.+.+|
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~----i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp- 150 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV----IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP- 150 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-
Confidence 3566789999999999999999999999998887742210 001122222222233333222 2334455677887
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccC
Q 010721 424 RTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 424 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (503)
++||.+.|+......+|+++.+.+...+.. .++...|++.+++.++..++.+.+++.
T Consensus 151 ~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 151 SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 569999999999999999876665555544 246667777777777777666665543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=60.07 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=60.9
Q ss_pred HHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
+...+++.....+.+.|.+|.+.++.|+ +..++|.+.++..+...++++++|.++||+++++.++....++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl--~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLGL--SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 4455566666777888899999999999 9999999999999999999999999999999998887765543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-06 Score=81.42 Aligned_cols=138 Identities=18% Similarity=0.150 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccc
Q 010721 338 LVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVI 417 (503)
Q Consensus 338 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (503)
..++..++.++..|.++||+|||..+.+......+..+.+.+ ..++.++ ..-..+.........++++
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~----------~~~~~~~--~~~l~g~~~~~~s~~~a~v 137 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF----------QGYWFFL--LLGLSGGFSAIFSVGFAYV 137 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH----------HHHHHhh--hcccccchhhhhhhhhhhe
Confidence 346777889999999999999999999888888777777665 2222222 1111222222345577889
Q ss_pred cccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCCCCH
Q 010721 418 PELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSL 487 (503)
Q Consensus 418 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (503)
+|....+.|....|+.+.....+..++|.+.+.+.+..|+..+|.+..+..++..+...++++|+..++.
T Consensus 138 adis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 138 ADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 9999999999999999999999999999999999999999999999999999988888888888765443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.4e-05 Score=73.75 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHhHHHHHHHHHHHhh---hh------HHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCC---ccchhhHHHHHH
Q 010721 155 RTFQIDTIPLILGAIISAQA---HS------LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY---RGSLGTLCQVGT 222 (503)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~ 222 (503)
|+++++.++..+|.++..++ ++ .+.++++.++.++|.|..-+...++++|.+++++ |...+.+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57888999999999885544 22 3678999999999999999999999999998763 567888899999
Q ss_pred HHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc
Q 010721 223 CLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 223 ~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
++|..++..+.+++.++.+ |.+.|.+.++..++..+.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999998888 999999988888877666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00019 Score=71.48 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=125.2
Q ss_pred cccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHhHHHHHHHHHHHhhhhH-----
Q 010721 104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHSL----- 177 (503)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~----- 177 (503)
+.....+..+.++++. +...+.-..+.+.-...+..+.+++++|-| ||-+++.++.++..++..+..++...
T Consensus 55 g~~~nlv~ylt~~~~~--~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p 132 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHA--SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP 132 (571)
T ss_pred cchhHHHHHHHHHhcc--chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 3456677888999998 667777888888888889999999999965 89999999999998887665544221
Q ss_pred --------------------HHHHHHHHHHHhhhhhhchhhhhhhhhcCC---CCC---ccchhhHHHHHHHHHHHHHHH
Q 010721 178 --------------------DEMLWGRFLVGLGIGVNTVLVPIYISEVAP---TKY---RGSLGTLCQVGTCLGIITSLF 231 (503)
Q Consensus 178 --------------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~ig~~ 231 (503)
..++...-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..
T Consensus 133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t 212 (571)
T KOG1237|consen 133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT 212 (571)
T ss_pred ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence 246666778888999999999999999998 322 236888899999999999999
Q ss_pred hhccCCCCCchhHHHHHhhHHHHHHHHHHhcc
Q 010721 232 LGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 232 ~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
+-.+..++.+ |.+.|.+..+..++.+++++.
T Consensus 213 ~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 213 VLVYIQDNVG-WKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred HHHhhhhccc-ceeeccHHHHHHHHHHHHHHc
Confidence 9888877777 999999877777666554433
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.004 Score=58.19 Aligned_cols=172 Identities=12% Similarity=-0.063 Sum_probs=82.8
Q ss_pred HHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH---HH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL---IL 166 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~---~~ 166 (503)
++.++..+-.-...+.+....+++.+++.. ++. .....+.+.+...+..++...+--+...|....++..++ .+
T Consensus 21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~~~--~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il 97 (406)
T KOG1479|consen 21 LIFLLLGIGTLLPWNMFITASDYYYYRFPG--YHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAIL 97 (406)
T ss_pred HHHHHHhcccccchHhhhccHHHHHhhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445556666667788877765 222 333444444444444444444444333322222221111 11
Q ss_pred HHHHHHhh---------hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHh----h
Q 010721 167 GAIISAQA---------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL----G 233 (503)
Q Consensus 167 ~~~~~~~~---------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~----~ 233 (503)
..+.+.++ ..+...++.-.+.|++.|..........++ +|++.-+..+ .+.++++++..++ .
T Consensus 98 ~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~Sl~~i~tk 172 (406)
T KOG1479|consen 98 FIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLTSLLRILTK 172 (406)
T ss_pred HHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHHHHHHHHHH
Confidence 11122221 356667777888899888888777766665 4555333222 2333333333222 2
Q ss_pred ccCCCCCchhHHHHHhhHHHHHHHHHHhccccCChH
Q 010721 234 IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPR 269 (503)
Q Consensus 234 ~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (503)
....+...+=..-|.+..++.+++++....+|+.|-
T Consensus 173 a~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 173 AAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 222222221334445555555566666666666653
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.6e-05 Score=69.95 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=86.8
Q ss_pred HHHHHHHHhhhhhhcccchhhHhHHHh--hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhh-----hhcchHHHHH-Hh
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSIAKE--LGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-----KLGCRRTFQI-DT 161 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~~ 161 (503)
.++.+.+++.|...+.....+|.+.++ -+. +..|.+.. |+....+. .-++|.++.| |+||||..++ .-
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~--sy~q~~~f-Sla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q 78 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKV--SYSQQAIF-SLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQ 78 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCC--ChhHheee-eeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence 456777888998888877778888887 455 66665532 22112221 2455666666 8999998765 44
Q ss_pred HHHHHHHHHHHhhh------------------------hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhH
Q 010721 162 IPLILGAIISAQAH------------------------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL 217 (503)
Q Consensus 162 ~~~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 217 (503)
.+.++..+..+..- +...+...-++.=+-++.--.++-.+.-....+++++.+..-
T Consensus 79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc 158 (544)
T PF13000_consen 79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC 158 (544)
T ss_pred HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence 44444444433221 011222333344444444555555666666777888888888
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 010721 218 CQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 218 ~~~~~~~G~~ig~~~~~~l~ 237 (503)
...+.++|..++..+--.+.
T Consensus 159 qtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 159 QTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHhHhhhhHHHHHHHHHhhC
Confidence 88888888888776654443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=70.23 Aligned_cols=138 Identities=16% Similarity=0.120 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCc
Q 010721 132 IFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYR 211 (503)
Q Consensus 132 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 211 (503)
...-.+.+.-++.=.+.|..-.|+++++-.+.......+.-+.++.+.+=+.-++.|...+ ...+-++++-+..+++++
T Consensus 50 vwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Y 128 (433)
T KOG3810|consen 50 VWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMY 128 (433)
T ss_pred chhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHH
Confidence 4445566777778889999999999999888888888888899999999999999999876 566778888889999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCCCc-hhHHHHHhhHHHHHHHHHHhccccCChHH
Q 010721 212 GSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQFTVESPRW 270 (503)
Q Consensus 212 ~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~-~wr~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (503)
.++.+...++.-.|...|..++-.+..... .+...-.+......+..+..+++|..++.
T Consensus 129 qrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rS 188 (433)
T KOG3810|consen 129 KRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRS 188 (433)
T ss_pred HHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchh
Confidence 999999999999999999888877765443 14444445444445556666777766543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.1e-05 Score=73.29 Aligned_cols=148 Identities=16% Similarity=0.066 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCC-chHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGR-QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (503)
.++..+...++.++++++.|+...|.+. |++++.+.+++.++.++.......+ +...+++.+.=+..+++.+..
T Consensus 73 fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-----~~~~y~mL~~R~l~Gvg~~n~ 147 (488)
T KOG2325|consen 73 FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-----NGVKYLMLVARILTGVGVGNF 147 (488)
T ss_pred hhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHcCcCcccH
Confidence 3466777899999999999999999886 8889999999999999885554433 223444444444455555555
Q ss_pred ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHc--C-----------CcchhHhHHHHHHHHHHHHHh
Q 010721 411 PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF--G-----------VAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g-----------~~~~~~~~~~~~~~~~~~~~~ 477 (503)
...-.|+++..-.++|.++++.......+|..+||.+...+.... | |..+-++.+.+.++..++..+
T Consensus 148 a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~ 227 (488)
T KOG2325|consen 148 AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF 227 (488)
T ss_pred HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence 667788888766777889988888877778888777654443210 1 344566777777777777777
Q ss_pred hccCCCC
Q 010721 478 FIVETKG 484 (503)
Q Consensus 478 ~~~~~~~ 484 (503)
+++|..+
T Consensus 228 ~f~E~~~ 234 (488)
T KOG2325|consen 228 FFKEVYR 234 (488)
T ss_pred heeeccc
Confidence 7776543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0047 Score=58.75 Aligned_cols=182 Identities=12% Similarity=0.042 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCC-CCchHHHHHHHHHHH-HHHHHHHhhhhhhhhhcchHHHHHHhH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTFQIDTI 162 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~ 162 (503)
.++.++.+.+.+++..+..+. +-.+.+.+.++ ..+..+.++-+..-+ +..+..++.+++.+++-+.+++-.-+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~ 100 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 344456666666666665543 34555555543 245567778787777 677889999999999999999888777
Q ss_pred HHHHHHHHHHhh---------------h-----------------hHHHHHHHHHHHHhhhhhhch-hhhhhhhhcCCCC
Q 010721 163 PLILGAIISAQA---------------H-----------------SLDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTK 209 (503)
Q Consensus 163 ~~~~~~~~~~~~---------------~-----------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~ 209 (503)
.+....+++++. + +.|...+.-.+.=+-.+.... .-.....|.+..+
T Consensus 101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ 180 (509)
T COG3202 101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE 180 (509)
T ss_pred HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 777777776653 0 112222222333332222322 3345678888889
Q ss_pred CccchhhHHHHHHHHHHHHHHHhhccCCCCCch---------hHHHHHhhHHHHHHHHHHhcc----ccCChHH
Q 010721 210 YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW---------WRTMLYIASLPGFILALGMQF----TVESPRW 270 (503)
Q Consensus 210 ~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~---------wr~~~~~~~~~~~~~~~~~~~----~~~~~~~ 270 (503)
|-.|..++++.+.+++..++..+..++.+.... -+..+.+.+..+++++.+..+ +.+.|.+
T Consensus 181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f 254 (509)
T COG3202 181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLF 254 (509)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Confidence 999999999999999999999998888764321 234444444444444444443 3445553
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.018 Score=56.41 Aligned_cols=150 Identities=15% Similarity=0.068 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCC-CCchHHHHHHHHHHH-HHHHHHHhhhhhhhhhcchHHHHHHhH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTFQIDTI 162 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~ 162 (503)
.++.++.+++..|+..+..+..- .+.+.+=++ .++..+..+-....+ ...+...+..+++++++|.+++-+...
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~lR----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~ 97 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTILR----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIII 97 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44556677777777666664432 222222110 033345555554444 344567789999999999998887776
Q ss_pred HHHHHHHHHHhh--h-----------------------------hHHHHHHHHHHHHhhhhhhch-hhhhhhhhcCCCCC
Q 010721 163 PLILGAIISAQA--H-----------------------------SLDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTKY 210 (503)
Q Consensus 163 ~~~~~~~~~~~~--~-----------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~ 210 (503)
.+.....+.++. | +.|.+.+.-++.-+-.....+ .-..+..|.++.+|
T Consensus 98 ~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e 177 (491)
T PF03219_consen 98 PFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE 177 (491)
T ss_pred HHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 666665555542 1 122222333333333333333 34667899999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 010721 211 RGSLGTLCQVGTCLGIITSLFLGIPAED 238 (503)
Q Consensus 211 r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 238 (503)
-.+..+++..+.++|.++++.+..++.+
T Consensus 178 AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 178 AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=66.88 Aligned_cols=140 Identities=9% Similarity=0.016 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhHHHhhcc-cCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcC-ccccc
Q 010721 336 SLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVT 413 (503)
Q Consensus 336 ~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 413 (503)
...+....-+..+++|++.|+ +|+++.+.++.++..++..++.+......... .. .......+..+..+.+ +-|..
T Consensus 29 ~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~-~~-~~~~l~gLaLia~G~GgiKp~v 106 (654)
T TIGR00926 29 FHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP-LH-DLLDLLGLALIALGTGGIKPCV 106 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc-hH-HHHHHHHHHHHHhhccccccCc
Confidence 344445555667788999997 79999999999988888877765322110000 11 1112222223333333 34666
Q ss_pred cccccccCCcc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCcchhHhHHHHHHHHHHHHHh
Q 010721 414 GLVIPELSSNR---TRGKIMGFSFSVHWVCNFLVGLFFLDLVETF-------GVAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 414 ~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~ 477 (503)
.+...|.++++ .+-..+.++....++|+.+++.+.+++.+.. +|...|.+.+++++++.++...
T Consensus 107 saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 107 SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 67777777643 4677888888899999999999999987554 4777777777777666655443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00025 Score=62.45 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcc-cccc
Q 010721 336 SLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG-PVTG 414 (503)
Q Consensus 336 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 414 (503)
.....++..+ .++.|.+.|++|.+.++.++.+...++..++........ .....+......+..+.+.++. ....
T Consensus 43 ~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i---~~~~~~~~~~~~~l~~~s~~~~~ta~l 118 (250)
T PF06813_consen 43 STAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI---PSLPVWLMCLFLFLGGNSSCWFNTASL 118 (250)
T ss_pred HHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc---CccchHHHHHHHHHHcccHHHhhhHHH
Confidence 4444555555 477899999999999999999999999988877654221 1123333444444444443332 2223
Q ss_pred ccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhcc
Q 010721 415 LVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 480 (503)
Q Consensus 415 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 480 (503)
....+.+|. +||++.|+.-....+++++...+...+.+. +....+.+.+....+..++...+++
T Consensus 119 vt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 119 VTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHhhhee
Confidence 334467875 699999999999999999988888777665 2222333344443333333333333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0015 Score=59.80 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccc
Q 010721 334 LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVT 413 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (503)
.+.....+...+...+.|.+.||+|||+.-+..+++..++++.-.. .+....++.-++........+..-=
T Consensus 73 ~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---------~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 73 ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---------SNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777888889999999999999998888888888875432 1112222222222222222112112
Q ss_pred ccccccc----CCcccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHcCC--cchhHhHHHHHHHHHHHHHhhccCCCC
Q 010721 414 GLVIPEL----SSNRTRGKIMGFSFS-VHWVCNFLVGLFFLDLVETFGV--APVYAGFGGVSLLSALFAYYFIVETKG 484 (503)
Q Consensus 414 ~~~~~~~----~~~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (503)
..++.|. +|++..+...+.... .+.+-.+.+..+.-.+.+..|. ..+|.....+.+++.++.....+|..+
T Consensus 144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 2334443 455555666665553 3334455556666667776664 667877777777777766555566543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0037 Score=60.55 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCc-hHHHhhHHHHHHHHHHHHHHhcCCCCc---chhhHHHHHHHHHHHHHHhc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQ-KLLIGSYLGMAISMLLVVGATSLPLDE---DFSHNLSILGTLFYIFTFAI 407 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 407 (503)
.......+.++.++|+.+..+..- -++| +.+.+..+.=.+...++.+....+... ...+. +...+..+..++..
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d-~~~~~~~~l~gltn 386 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGD-AYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeeccc-HHHHHHHHHHHHhh
Confidence 346678889999999997655321 1222 133333333333333332222111000 01122 22223344444454
Q ss_pred Cc-cccccccccccCCcccchhhHHHHHHHHHHHHHHHHHH
Q 010721 408 GA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF 447 (503)
Q Consensus 408 ~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 447 (503)
|. ......+..+..++++|..+..+...+..+|-.+|+.+
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 35566777888888888888888888887777777655
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00082 Score=63.20 Aligned_cols=110 Identities=22% Similarity=0.158 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhH--HHH---HHHHHHHhhhhHHHHHHHHHHHHhhhhhhchh
Q 010721 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI--PLI---LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVL 197 (503)
Q Consensus 123 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~--~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 197 (503)
..+..+...+|.+|-.++.--...+ |+ |++.+...+ +.. +...+.-+.++.|.+++.-+..|+..|..++-
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 4456777888888777664432221 33 444333322 222 22233345689999999999999999999999
Q ss_pred hhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccC
Q 010721 198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA 236 (503)
Q Consensus 198 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l 236 (503)
....+.|-.++++|..++|....+-++|..++.+++..+
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0025 Score=61.10 Aligned_cols=148 Identities=19% Similarity=0.163 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
++...++..+.++..-.+......+.+.-|+ ++..+|..-+...+....+.+.+.++.+|+|..+.=+++...-.+..
T Consensus 260 vflas~alalLY~TVLsf~~lmt~yl~~~G~--s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L 337 (432)
T PF06963_consen 260 VFLASFALALLYFTVLSFGGLMTAYLKSQGY--SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL 337 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 4555555555555444456666666677799 99999999999999999999999999999999888777765544333
Q ss_pred HHHHh---h---h----hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC
Q 010721 169 IISAQ---A---H----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (503)
Q Consensus 169 ~~~~~---~---~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 238 (503)
.++.. . + +...++.+-.+.=+|.=..-.+..-++.|..|+++||...|.-....++-.++-..++..+.+
T Consensus 338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33322 1 2 333444444555555556777778899999999999999999998888888888777665544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0072 Score=60.08 Aligned_cols=157 Identities=17% Similarity=0.045 Sum_probs=90.2
Q ss_pred HhhhhhhcccchhhH-hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHH---HHHHHHH
Q 010721 97 FLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI---LGAIISA 172 (503)
Q Consensus 97 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~ 172 (503)
|+.+++.-.+-.+.. .+.--+|- +..+.+.+.+++.+|..+|+.+++++.++--++.. .+-..+.. ++..+..
T Consensus 24 f~sg~~~L~yEv~~~r~l~~~~G~--s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~ 100 (521)
T PRK03612 24 FVCAACGLVYELLLGTLASYLLGD--SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILY 100 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344444433333332 33344455 77888999999999999999999988744333322 11111111 1111111
Q ss_pred hhhh----H-HHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC-CCchhHHH
Q 010721 173 QAHS----L-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-DPHWWRTM 246 (503)
Q Consensus 173 ~~~~----~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~-~~~~wr~~ 246 (503)
.... + ..++..-++.|+..|+..|....+..+... ++-+...|-.+....+|.++|.++.+++.- ..|-.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~ 179 (521)
T PRK03612 101 AAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTA 179 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111 1 223344567788888888887776665432 224667788888899999999988776543 44535555
Q ss_pred HHhhHHHHHHH
Q 010721 247 LYIASLPGFIL 257 (503)
Q Consensus 247 ~~~~~~~~~~~ 257 (503)
+++..+..++.
T Consensus 180 ~~~a~l~~~~a 190 (521)
T PRK03612 180 ALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHH
Confidence 55444333333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=63.82 Aligned_cols=131 Identities=21% Similarity=0.280 Sum_probs=83.7
Q ss_pred HHHHhHHHhhcccC-----CchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcc-cccccccc
Q 010721 345 AGALCASYLMDKEG-----RQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIP 418 (503)
Q Consensus 345 ~~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 418 (503)
...++.|.++|-+. ||.-++++.++..++.+.+...+... .........++...++.... .+.-+...
T Consensus 39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~------~s~~~~~~~l~la~~g~a~~DV~aDa~vv 112 (433)
T PF03092_consen 39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE------SSAAIAVVLLFLASFGYAFADVAADALVV 112 (433)
T ss_pred HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc------chhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45678899999862 44455556666655555555433211 11222222222233332221 33445556
Q ss_pred ccC---CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCC
Q 010721 419 ELS---SNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVET 482 (503)
Q Consensus 419 ~~~---~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (503)
|.. |.+ +|...+.......+|+.++..+.|.+.+..+++..|.+.+.+..+..+..++..+|+
T Consensus 113 E~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~ 178 (433)
T PF03092_consen 113 ELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER 178 (433)
T ss_pred HHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence 654 334 788899999999999999999999999999999999888888777766666666653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.023 Score=49.57 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=37.7
Q ss_pred CCccchhhHHHHHHHHHHHHHHHhhccCCC-----CCchhHHHHHhhHHHHHHHHHHhccc
Q 010721 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAED-----DPHWWRTMLYIASLPGFILALGMQFT 264 (503)
Q Consensus 209 ~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~ 264 (503)
|+|+....+...+.++|.++.-+.--...+ ... |++.+.+.+++.++-+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~-W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNN-WQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888899998887655322211 122 9999999888877666555443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.11 Score=46.98 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCC--CCc
Q 010721 134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYR 211 (503)
Q Consensus 134 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r 211 (503)
.+..+.++++.+.+..++|.|++++++...+...-.. =+-+.+..++-.-.+.|++.+..+..--+|+++.-.+ ++|
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~ 146 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR 146 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence 4444566667779999999999999887776544222 1237788899999999999999998888887665432 223
Q ss_pred ---------cc----hhhHHHHHHHHHHHHHHHhh
Q 010721 212 ---------GS----LGTLCQVGTCLGIITSLFLG 233 (503)
Q Consensus 212 ---------~~----~~~~~~~~~~~G~~ig~~~~ 233 (503)
.+ ...+++...-+|..+...+-
T Consensus 147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~ 181 (390)
T KOG3097|consen 147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIM 181 (390)
T ss_pred hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 23 44455556666655555443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.012 Score=47.71 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccc
Q 010721 336 SLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL 415 (503)
Q Consensus 336 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (503)
..+......++.++.+.+.+++|.|+.++++.+...+-...... ..+..++....+.+......+.....
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----------~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----------PNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 44555666777788899999999999999998877765555432 22233333333333333333444556
Q ss_pred cccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 416 VIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV 452 (503)
Q Consensus 416 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 452 (503)
++.+...++.+++..|+...+.+.+.++|..+.-.+.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888889999999999999888877776654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.1 Score=50.37 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh---hhcchHHHHHHhHHHHHHHHHHHhh------------------hhHHHHHHHH
Q 010721 126 EGLVVSIFIAGAFVGSISSGSLAD---KLGCRRTFQIDTIPLILGAIISAQA------------------HSLDEMLWGR 184 (503)
Q Consensus 126 ~g~~~s~~~~~~~i~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r 184 (503)
.++..-...+|..+++.+.+.+++ ++||++.+.++.++..++.++.-.. +++...+++-
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 344444445555556666777775 5799999999998888888876553 2466788889
Q ss_pred HHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhcc
Q 010721 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP 235 (503)
Q Consensus 185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 235 (503)
++.|++-+......+.++.+.+ +++|..+.++...-..++..++-+....
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999 4558888888887777777776555443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0062 Score=57.30 Aligned_cols=129 Identities=13% Similarity=0.065 Sum_probs=84.4
Q ss_pred hhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcc-hHHHHHHhHHHHHHHHHHH-hh---hhHHHHHH
Q 010721 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDTIPLILGAIISA-QA---HSLDEMLW 182 (503)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~-~~---~~~~~l~~ 182 (503)
..+......-|. +....|++..+..++.++++++.|.+.||... |.+.++......++..... +. ...+.++.
T Consensus 287 ~~l~~~l~~sgY--~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~ 364 (480)
T KOG2563|consen 287 TLLNLALCPSGY--EGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFT 364 (480)
T ss_pred HHhhhccccccC--CccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhh
Confidence 333333444455 55678999999999999999999999999865 5566666555555532222 11 33445666
Q ss_pred HHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCC
Q 010721 183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (503)
Q Consensus 183 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 238 (503)
.-.+.|++.....|...-+-.|..-+..-+.-.|+......+=.++-.++-+...+
T Consensus 365 t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~ 420 (480)
T KOG2563|consen 365 TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE 420 (480)
T ss_pred hHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence 67788888888999988888877655555566666655444444444444444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.075 Score=51.86 Aligned_cols=109 Identities=8% Similarity=-0.154 Sum_probs=71.0
Q ss_pred HHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcc----------------hh------hHHHHHHHHHHH
Q 010721 345 AGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED----------------FS------HNLSILGTLFYI 402 (503)
Q Consensus 345 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~------~~~~~~~~~~~~ 402 (503)
+..++.+++++|++|+++...........++++.+......+.- .. ..+......+..
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~ 138 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMA 138 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH
Confidence 33677899999999999887776666666655555421110000 00 011111122222
Q ss_pred HHHhcCccc-cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 403 FTFAIGAGP-VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 453 (503)
Q Consensus 403 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 453 (503)
-.++....+ +.+.+++|.+..++..+-.++....+++|..+++.+..++.+
T Consensus 139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233 678899999999999999999999999999999999888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=56.51 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=75.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCc-cccccccccccCCcc---cchhhHHHHHHH
Q 010721 361 KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNR---TRGKIMGFSFSV 436 (503)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~g~~~~~ 436 (503)
+.++++.++..++.+++.+........... ....+...+.....+.|. =|....+..|.++++ ++.+.+..++..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~-~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGI-QLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC-------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhH-HHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 466778888888888866654333221111 122222223333334333 366777788877764 466777888999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHh
Q 010721 437 HWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 437 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 477 (503)
.++|..++..+.+++.++.||...|.+.++..+++.+..+.
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998888777777665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.091 Score=48.31 Aligned_cols=126 Identities=21% Similarity=0.123 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhc-Ccc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAG 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 410 (503)
.+.......+...++.++.|.+.||.|||+.+..+.....++.+...+... ............ .+... ...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~g~~~~~~~ 112 (338)
T COG0477 41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-------VGLALLLILRLL-QGLGGGGLL 112 (338)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-------chHHHHHHHHHH-HHhhhHHHH
Confidence 345566677777777799999999999997777666553444333332111 011222222221 22232 344
Q ss_pred ccccccccccCCc-ccchhhHHHHHH-HHHHHHHHHHHHHHHHHHH--cCCcchhHhHH
Q 010721 411 PVTGLVIPELSSN-RTRGKIMGFSFS-VHWVCNFLVGLFFLDLVET--FGVAPVYAGFG 465 (503)
Q Consensus 411 ~~~~~~~~~~~~~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~ 465 (503)
+....+..|..|. +.++...+.... ...++..+++.+.+.+... .+|+..+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (338)
T COG0477 113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAA 171 (338)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 6677888888887 568888888888 5777888888777766654 34555443333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.1 Score=52.97 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcC-----------------C---------------
Q 010721 337 LLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSL-----------------P--------------- 384 (503)
Q Consensus 337 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~--------------- 384 (503)
..+-++.++......+...|..|-+.+-++.++++++.++..+.-.. +
T Consensus 139 s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 218 (735)
T KOG3626|consen 139 SSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNL 218 (735)
T ss_pred eecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccc
Confidence 34445555555666666667777677777777777666666554100 0
Q ss_pred ---CC--c---chhh--HH-HHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 385 ---LD--E---DFSH--NL-SILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 453 (503)
Q Consensus 385 ---~~--~---~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 453 (503)
.. . ...+ .+ .++..-++.+.......++..+|+-|.+.+++.....|+.+++..+|-++|=.+++.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 219 CRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred cCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 00 0 0111 22 222222222222233457778899999999999999999999999988888777777664
Q ss_pred Hc------------------C-CcchhHhHHHHHHHHHHHHHhhccCCCC
Q 010721 454 TF------------------G-VAPVYAGFGGVSLLSALFAYYFIVETKG 484 (503)
Q Consensus 454 ~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (503)
.+ | |...|++.+.+.++.++.. +++|+...
T Consensus 299 lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp 347 (735)
T KOG3626|consen 299 LYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELP 347 (735)
T ss_pred eeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCc
Confidence 21 2 4456777777777777654 45555443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.19 Score=47.73 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=68.3
Q ss_pred HHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcc
Q 010721 345 AGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR 424 (503)
Q Consensus 345 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (503)
+..+....+.|.++.|++++++.+...+...++.+.. .....-..-+..+.....-...++++-..+|++
T Consensus 56 ~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~----------sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~ 125 (412)
T PF01770_consen 56 AFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT----------SVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKE 125 (412)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC----------cHHHHHHHHHHHHHHHHHHHHHHHHheeecCHH
Confidence 3445677899999999999999888888877776632 222222222222222223344556666777888
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010721 425 TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 456 (503)
Q Consensus 425 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 456 (503)
+--++.+....+.-+|..++..++-.+....+
T Consensus 126 ~yq~vts~~raa~l~g~~~s~~lgQllvs~~~ 157 (412)
T PF01770_consen 126 HYQKVTSYTRAATLVGRFISSLLGQLLVSFGG 157 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888999999888888888877766665444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.078 Score=51.54 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcch--HHHHH--HhHHHHHHHHHHHh---------hhhHHHHHHHHHHHHhhh
Q 010721 125 LEGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQI--DTIPLILGAIISAQ---------AHSLDEMLWGRFLVGLGI 191 (503)
Q Consensus 125 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~--~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~ 191 (503)
..-++..+|.++-.+|..+..+.. .-++| .+++. .=+++.-..++|.. -++-+..++.-++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 344567778888888777554321 11222 33222 22223333334432 246677788899999999
Q ss_pred hhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhc
Q 010721 192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI 234 (503)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 234 (503)
|-....+..+..+..+++||..+..+...+..+|..+|..++-
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887753
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.0056 Score=56.71 Aligned_cols=114 Identities=16% Similarity=0.081 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCC---cchhhHHHHHHHHHHHHHHhcCc-
Q 010721 334 LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD---EDFSHNLSILGTLFYIFTFAIGA- 409 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~- 409 (503)
.....+.++.++|+.+.++..-+..+++.+.+..+.=.+...++......+.. +..-...+...+..+.+++..|+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34667889999999988875322113333333323222222222222111110 00111122233334445555555
Q ss_pred cccccccccccCCcccchhhHHHHHHHHHHHHHHHHHH
Q 010721 410 GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF 447 (503)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 447 (503)
......+..+..++++|..+..+......+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888888888777777777776666554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.01 Score=59.23 Aligned_cols=146 Identities=16% Similarity=0.063 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCC-------------------------
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD------------------------- 386 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 386 (503)
.+.+.+.+-++.++..++..++.+|..|-+.+-++.++++++.+++.+.......
T Consensus 40 ~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~ 119 (539)
T PF03137_consen 40 SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSS 119 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccccccccc
Confidence 4566778888888999999999999888888888888888888887654211100
Q ss_pred -------------cchhhHHHHHHHHHHHHHHhcC---ccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010721 387 -------------EDFSHNLSILGTLFYIFTFAIG---AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 450 (503)
Q Consensus 387 -------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 450 (503)
.....+..+...++.-...+.| ..++..+|+-|.++++..+...|+...+..+|-++|=.+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~ 199 (539)
T PF03137_consen 120 SQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSF 199 (539)
T ss_dssp --------------------------------SSS---------------------------------------------
T ss_pred ccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHH
Confidence 0001111111111111222222 357778999999999999999999999998888877666665
Q ss_pred HHHH---------------------cC-CcchhHhHHHHHHHHHHHHHh
Q 010721 451 LVET---------------------FG-VAPVYAGFGGVSLLSALFAYY 477 (503)
Q Consensus 451 l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~ 477 (503)
..+. .| |...|++.+.+.++.++....
T Consensus 200 ~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 200 CLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp -------------------------------------------------
T ss_pred HHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5531 23 555666677766666665443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.84 Score=45.63 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcchhHhHHHHHHHHHHHH
Q 010721 426 RGKIMGFSFSVHWVCNFLVGLFFLDLVE-TFGVAPVYAGFGGVSLLSALFA 475 (503)
Q Consensus 426 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~ 475 (503)
.+...|-.+.+..+|+++|+.+.+.+.- .+|.....++.+.+.++.+++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999888765 6886666666666655555433
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.025 Score=50.36 Aligned_cols=133 Identities=13% Similarity=0.054 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhc
Q 010721 126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEV 205 (503)
Q Consensus 126 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 205 (503)
.|.+.-+-.+...+-.+.+-...||+---.=+.+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+ .
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~ 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-R 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-c
Confidence 344555555666666777777888865444455566777888889999999999999999999988877766654433 3
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHhhccCCC--CCchhHHHHHhhHHHHHHHHHHhccc
Q 010721 206 APTKYRGSLGTLCQVGTCLGIITSLFLGIPAED--DPHWWRTMLYIASLPGFILALGMQFT 264 (503)
Q Consensus 206 ~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~--~~~~wr~~~~~~~~~~~~~~~~~~~~ 264 (503)
+++. ..+.+..+.+.+.++|..--..+.+ ... -|...++...+-++.+...+++
T Consensus 143 Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~s-pk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 143 YPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLS-PKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred CCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCC-hhhHHHHHHHHHHHHHHHHHhe
Confidence 3332 4444555555555555544444444 122 6777777666666665555553
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.024 Score=52.55 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHH--hHHHHHHHHHH----------HhhhhHHHHHHHHHHHHhhhhhh
Q 010721 128 LVVSIFIAGAFVGSISSGSLADK-LGCRRTFQID--TIPLILGAIIS----------AQAHSLDEMLWGRFLVGLGIGVN 194 (503)
Q Consensus 128 ~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~--~~~~~~~~~~~----------~~~~~~~~l~~~r~l~G~~~~~~ 194 (503)
.+..+|.++-.+|..+.++.-=+ -.+|++++.+ =+++.-..++| .+.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888888877763211 1244443321 12222222222 12346677788899999999999
Q ss_pred chhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhcc
Q 010721 195 TVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP 235 (503)
Q Consensus 195 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 235 (503)
...+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888877643
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.1 Score=41.50 Aligned_cols=165 Identities=8% Similarity=-0.058 Sum_probs=91.4
Q ss_pred HHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 169 (503)
+.+.+++++.....-+.......+..+++-+ +-...+.-.-.-.....+..++.|...|+..|+|++-..+++.-++.+
T Consensus 30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gn-sl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~ 108 (503)
T KOG2601|consen 30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGN-SLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVI 108 (503)
T ss_pred ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCc-eehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHH
Confidence 4556677776666666666666666666541 333333444444555667778889999999999998777665433332
Q ss_pred HHH------hh------hhHHHHHHHHHHHHhhhhhhc----hhhhhhhhhcC----CCCCcc---chhhHHHHHHHHHH
Q 010721 170 ISA------QA------HSLDEMLWGRFLVGLGIGVNT----VLVPIYISEVA----PTKYRG---SLGTLCQVGTCLGI 226 (503)
Q Consensus 170 ~~~------~~------~~~~~l~~~r~l~G~~~~~~~----~~~~~~i~~~~----~~~~r~---~~~~~~~~~~~~G~ 226 (503)
.++ +. .+++.+..+-.+.-...+... ......-.||. ..+.+. ...+.....-..-.
T Consensus 109 vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn 188 (503)
T KOG2601|consen 109 VAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTN 188 (503)
T ss_pred HHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhh
Confidence 222 22 255555555444333222211 11111223443 222233 33355555566677
Q ss_pred HHHHHhhccCCCCCchhHHHHHhhHHHHHH
Q 010721 227 ITSLFLGIPAEDDPHWWRTMLYIASLPGFI 256 (503)
Q Consensus 227 ~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~ 256 (503)
++.|.+.|.+....+ -|..-.+.++-.++
T Consensus 189 ~Lapv~tg~Iitfvs-l~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 189 LLAPVITGLIITFVS-LRASAGTFAAWALV 217 (503)
T ss_pred chhhhhhcccceeec-hhhhhhhhHHHHHH
Confidence 888888888887665 56654444444443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.13 Score=48.74 Aligned_cols=131 Identities=10% Similarity=-0.078 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcC
Q 010721 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206 (503)
Q Consensus 127 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 206 (503)
.|-..++.+...+.++..-++.+|+|-|+.++.+...+.++..+.+..++.+.....|-..|+-.+....+....++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 35566777777799999999999999888888888878888888888899999888898888666666555555554442
Q ss_pred CC-----------------------CCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHH
Q 010721 207 PT-----------------------KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL 257 (503)
Q Consensus 207 ~~-----------------------~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~ 257 (503)
.. ..+|.-.|+.++...+-.++..+..|.+.+..|+-+.+-...++.++..
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~ 488 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLI 488 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHH
Confidence 11 1246666777777778777777777777776665556555555555444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.6 Score=41.59 Aligned_cols=110 Identities=9% Similarity=-0.103 Sum_probs=68.7
Q ss_pred HHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhc--CCCCcc--------------hhh------HHHHHHHHHH
Q 010721 344 FAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATS--LPLDED--------------FSH------NLSILGTLFY 401 (503)
Q Consensus 344 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------~~~------~~~~~~~~~~ 401 (503)
++...+-.++++++++.++..+..........++++... ....+. ... .+......+.
T Consensus 73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~ 152 (491)
T PF03219_consen 73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM 152 (491)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 445566788999999998877666665555555544321 100000 000 0001111111
Q ss_pred HHHHhcCcc-ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 402 IFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 453 (503)
Q Consensus 402 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 453 (503)
.=.++.... -+.+.+++|....++..+..++.....++|..+++.+..++.+
T Consensus 153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222 2468889999999999999999999999999999999888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.38 Score=33.66 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHH
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG 369 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 369 (503)
.+.+.++..+..+++.++.|+++||.++++........
T Consensus 37 iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 37 IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 45778888999999999999999999999887765543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.31 E-value=4.4 Score=35.96 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcch--HHHHHHhHHHHHHHHHHHh----hh---hHHHHHHHHHHHHhhhhhhch
Q 010721 126 EGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQIDTIPLILGAIISAQ----AH---SLDEMLWGRFLVGLGIGVNTV 196 (503)
Q Consensus 126 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----~~---~~~~l~~~r~l~G~~~~~~~~ 196 (503)
.|.+.+.++++.++|+-+..++..|-..| ..+.+..++.+....+..+ +| +...-+++-++.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 58899999999999999998888876655 3444444444444333322 22 222234555566677888999
Q ss_pred hhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHH
Q 010721 197 LVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258 (503)
Q Consensus 197 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~ 258 (503)
....+-+++.|++.|...+.++..-.++=..++-..--.-....+ -|..|-++.+...+..
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~-tr~mf~icS~~~~~a~ 424 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTT-TRNMFGICSAFLFVAS 424 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccc-cchhhhhhHHHHHHHH
Confidence 999999999999999999988765444332222111000001112 6777877776665553
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.38 E-value=8.9 Score=38.89 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhHHHhhcc-cCCchHHHhhHHHHHHHHHHHHHHhcCCCCc--------------c-hhhHHHHHHHH
Q 010721 336 SLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLDE--------------D-FSHNLSILGTL 399 (503)
Q Consensus 336 ~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~ 399 (503)
...+........+.+++++|- +||.+++.++.++..++..++......+... . ...-..++...
T Consensus 79 v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~ 158 (571)
T KOG1237|consen 79 VNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGA 158 (571)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHH
Confidence 334444555666788899997 4788888888888887766665543332110 0 11111222222
Q ss_pred HHHHHHh-cCccccccccccccCCc----c--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHH
Q 010721 400 FYIFTFA-IGAGPVTGLVIPELSSN----R--TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 472 (503)
Q Consensus 400 ~~~~~~~-~~~~~~~~~~~~~~~~~----~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 472 (503)
+.....+ .+.-|...++-+|-++. + .+..-+.-.....++|..++-.+..++.++.||...|.+..++.+++.
T Consensus 159 l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai 238 (571)
T KOG1237|consen 159 LYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAI 238 (571)
T ss_pred HHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHH
Confidence 3323222 33346666777777762 2 223666677777789999998888888899999999988888777766
Q ss_pred HHHH
Q 010721 473 LFAY 476 (503)
Q Consensus 473 ~~~~ 476 (503)
++.+
T Consensus 239 ~iF~ 242 (571)
T KOG1237|consen 239 LIFL 242 (571)
T ss_pred HHHH
Confidence 6544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.43 E-value=2.2 Score=40.44 Aligned_cols=111 Identities=19% Similarity=0.128 Sum_probs=75.9
Q ss_pred chHHHHHHHH-HHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHH-------HhhhhHHHHHHHHHHHHhhhhhh
Q 010721 123 PILEGLVVSI-FIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS-------AQAHSLDEMLWGRFLVGLGIGVN 194 (503)
Q Consensus 123 ~~~~g~~~s~-~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~-------~~~~~~~~l~~~r~l~G~~~~~~ 194 (503)
+...-++..+ |.+.-.+|.+.+.++-+.=.|+..+...+=+..+-.+.. .+-.+-+.+++.-.+.|+..|-.
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYl 360 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYL 360 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchH
Confidence 3344455556 888888887777766665433333322222222222221 22357778888999999999999
Q ss_pred chhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhh
Q 010721 195 TVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233 (503)
Q Consensus 195 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 233 (503)
......+..+-++++++..+-.+.......|...|..++
T Consensus 361 tsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 361 TSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred hhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999888888888888888888877664
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=87.18 E-value=19 Score=31.11 Aligned_cols=34 Identities=18% Similarity=0.011 Sum_probs=17.2
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc
Q 010721 208 TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (503)
Q Consensus 208 ~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 241 (503)
++++.+.-.......-++.++|.++++.+.+..+
T Consensus 157 ~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~ 190 (209)
T PF06912_consen 157 GKDRALRRALRYLLIILSFFIGAILGALLYRRLG 190 (209)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3433333344445555556666666665555444
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.89 E-value=2.2 Score=38.54 Aligned_cols=141 Identities=12% Similarity=0.043 Sum_probs=92.9
Q ss_pred HHHHHHHHhhhhhhcccchhh--HhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchH---H---HHHHh
Q 010721 90 LIASMSNFLFGYHIGVMNGPI--VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR---T---FQIDT 161 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~---~---l~~~~ 161 (503)
+-++..++..++.+....+.+ |. .+.+.++ .+.|.-|....|.+|..++. =+-++=+-+ . +-.-.
T Consensus 254 vPL~~VY~~EY~INQGl~ell~F~c-~~g~sls-~~sqYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vN 326 (409)
T KOG3880|consen 254 VPLALVYFAEYFINQGLAELLLFPC-SHGFSLS-KDSQYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVN 326 (409)
T ss_pred HHHHHHHHHHHHHhhhhHhhEEecc-ccCCccc-hhhcchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHH
Confidence 334444555554444333332 22 3344442 23457788888888754322 222222211 1 12233
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC
Q 010721 162 IPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (503)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 237 (503)
+++.+...+..+.++++..++.-+.-|+-.|..++-..--+.+-.++++|-.+++...++-++|..++.+++..+-
T Consensus 327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 4445555666778999999999999999999999888888888888899999999999999999999998887654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.28 E-value=17 Score=33.79 Aligned_cols=124 Identities=18% Similarity=0.171 Sum_probs=74.9
Q ss_pred hhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHH----HHHH-Hhh----hhHH
Q 010721 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG----AIIS-AQA----HSLD 178 (503)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~----~~~~-~~~----~~~~ 178 (503)
..+-.+...+. +..-.|.+++.+.|..+..+|+...-++.|.--.-+.+..-.++..++ .++. .|+ ++-+
T Consensus 28 lal~tLatyLl-G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~ 106 (508)
T COG4262 28 LALGTLATYLL-GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRL 106 (508)
T ss_pred HHHHHHHHHhc-CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHH
Confidence 34445555553 226678899999999999999999888887543333332222222221 1111 233 5677
Q ss_pred HHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhc
Q 010721 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI 234 (503)
Q Consensus 179 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 234 (503)
.++++-++.|.-.|...|..+.++.....+- ....+.....-.+|...+.++-.
T Consensus 107 Vly~lt~vIG~LVG~EiPL~mrml~~r~a~~--k~~~s~vl~~DYLGal~~gLl~p 160 (508)
T COG4262 107 VLYALTAVIGVLVGAEIPLLMRMLQRRQAKA--KDLGSRVLTLDYLGALAGGLLWP 160 (508)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHH--HhhhhhhhhhHhhhhhhHHHHHH
Confidence 8888999999999999999998887732211 11222222235556555555443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.22 E-value=20 Score=35.07 Aligned_cols=113 Identities=10% Similarity=-0.120 Sum_probs=70.3
Q ss_pred HHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCC---cc----------hh-h---------HHHHHHH
Q 010721 342 TNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD---ED----------FS-H---------NLSILGT 398 (503)
Q Consensus 342 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------~~-~---------~~~~~~~ 398 (503)
+.++..++..++.+++.+.++..+........++++++......+ ++ .. + .|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 345666778889999998888776666666665555554321000 00 00 0 0111111
Q ss_pred HHHHHHHhcCc-cccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 399 LFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 454 (503)
Q Consensus 399 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 454 (503)
.+..=.++... .-+.+..++|....++..+-.++.+...+++..+++.+..++..+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11111122111 225667788999999999999999999999999999988888763
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=83.42 E-value=6.5 Score=28.04 Aligned_cols=50 Identities=20% Similarity=0.117 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHH
Q 010721 331 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGA 380 (503)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 380 (503)
.++++.+...++.++|.+...++.++.++++.+..+.+...+..+.+.+.
T Consensus 28 ~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 28 QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999999999999888888888888888888887763
|
Note that many members are hypothetical proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 503 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-30 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 57/415 (13%), Positives = 113/415 (27%), Gaps = 71/415 (17%)
Query: 111 VSIAK----ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT----I 162
++A E GF + G +S GS++D+ R
Sbjct: 47 FALAMPYLVEQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104
Query: 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGT 222
++ + S+ M FL G G+ + K RG + ++
Sbjct: 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164
Query: 223 CLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK 281
+G I L + W LY+ + ++AL +
Sbjct: 165 NVGGGIPPLLFLLGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQ--------SCG 215
Query: 282 AVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH-------------SRVAF 328
+ + E+ +++ + +L R
Sbjct: 216 LPPIEEYKNDYPDDYNEK----AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI 271
Query: 329 ---------------IGDGALASLLVGVTNFAGALCASYLMDK--EGRQKLLIGSYLGMA 371
+ + A L G L ++ DK G + ++ +
Sbjct: 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331
Query: 372 ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIM 430
+V + N ++ + F I G + GL EL+ + G
Sbjct: 332 TIATIVYWMN-------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 384
Query: 431 GF-----SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 480
GF + +VG V+ FG + G S+L+ + ++
Sbjct: 385 GFTGLFGYLGGSVAASAIVGY----TVDFFGWDGGFMVMIGGSILAVILLIVVMI 435
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 7/141 (4%)
Query: 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT 156
FL+ +N ++ ++ F GL+ S F G F+ I +G L KL +
Sbjct: 36 FLWAV-ANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93
Query: 157 FQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGV-NTVLVPIYISEVAPTKYRG 212
LGA + +A+ + L G F++ G+G T P +++ + P
Sbjct: 94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP-FVTVLGPESSGH 152
Query: 213 SLGTLCQVGTCLGIITSLFLG 233
L Q G I ++ G
Sbjct: 153 FRLNLAQTFNSFGAIIAVVFG 173
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 5e-06
Identities = 63/438 (14%), Positives = 112/438 (25%), Gaps = 126/438 (28%)
Query: 2 RVATVLHHPVRPVPSY---RSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSR 58
+ T P Y R L+ + F+ + S L ++ L ELR
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQ------VFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 59 KQ----------KQDGENLLSRDQKAEEGFDLG--WLPAF-----PHVLIASMSNFLFGY 101
K K + K + D WL P ++ + L Y
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLL--Y 207
Query: 102 HIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT 161
I + N L S+ +L RR +
Sbjct: 208 QIDPNWTSRSDHSS------NIKLR-----------------IHSIQAEL--RRLLKSKP 242
Query: 162 IPLILGAIISAQAHSLDEM----LWGRFLVG---L----GIGVNTVLVPIYISEVAPTKY 210
L ++ L + W F + L V L + ++ +
Sbjct: 243 YENCL--LV------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 211 RGSLG---TLCQVGTCLGIITS-----------LFLGIPAE---DDP-HW--WRTMLY-- 248
+L + L L I AE D W W+ +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 249 --------IASL-PGFILALGMQFTVESPRWLCKGGMLNDAK---AVIANLWGESEINKA 296
+ L P + + +V A +++ +W + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV----------FPPSAHIPTILLSLIWFDVIKSDV 404
Query: 297 IEEFQLVIKKDGSDLDSQWSELLEEPHS-----RVAFIGDGALASLLVGVTNFAGALCAS 351
+ + K S ++ Q E S +V + AL +V N +
Sbjct: 405 MVVVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 352 YLMDKEGRQKLLIGSYLG 369
L+ Q S++G
Sbjct: 463 DLIPPYLDQ--YFYSHIG 478
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 52/423 (12%), Positives = 121/423 (28%), Gaps = 51/423 (12%)
Query: 87 PHVLIASMSNFLFGYHIGVMNGPIVSI--AKELGFEGNPILEGLVVSIFIAGAFVGSISS 144
+ + + F + + +G P I + G++ + + +
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLF 63
Query: 145 GSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGV-----NTVLVP 199
G L+DKLG R+ +++ + + + + G+ P
Sbjct: 64 GLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123
Query: 200 I--YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL 257
E + G G + + +GI + + + ++ S IL
Sbjct: 124 AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQF---VFWLGSGCALIL 180
Query: 258 ALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE 317
A+ + F A +L E+ + + + L + +
Sbjct: 181 AVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSL----------YVI 230
Query: 318 LLEEPHSRVA---------FIGDGALASLLVGVTNFAGALC-------ASYLMDKEGRQK 361
+ + F G + + G G L A ++++ G +
Sbjct: 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN 290
Query: 362 LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELS 421
L+ + M++ ++ ATS ++ ++F I
Sbjct: 291 ALLLAGTIMSVRIIGSSFATSAL--------EVVILKTLHMFEVPF-LLVGCFKYITSQF 341
Query: 422 SNRTRGKIMGFSFSVHW-VCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 480
R I F + + + ++ E+ G Y G V+L L + + +
Sbjct: 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401
Query: 481 ETK 483
Sbjct: 402 GPG 404
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171
+A++L V+ ++ V + G ++D++G R + +L +++
Sbjct: 25 DMARDLN--VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82
Query: 172 AQAHSLDEMLWGRFLVGLGIGVNTVL 197
SL ++ + G+G GV V+
Sbjct: 83 VTTSSLTVLIAASAMQGMGTGVGGVM 108
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 503 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.56 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.38 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.37 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.37 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.28 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.07 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.01 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-44 Score=353.29 Aligned_cols=410 Identities=26% Similarity=0.455 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCC------CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI 159 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~ 159 (503)
+...++.+++.++.++|.+.++..+|.+.++++.+. ++.+.|++.+++.+|.++|++++|+++||+|||+++++
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 444556678889999999999999999999885421 24567899999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHH
Q 010721 160 DTIPLILGAIISA------------------QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVG 221 (503)
Q Consensus 160 ~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 221 (503)
+.+++.+++++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++..++.+.+
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 9999999999999 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCC-------CchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchH
Q 010721 222 TCLGIITSLFLGIPAEDD-------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN 294 (503)
Q Consensus 222 ~~~G~~ig~~~~~~l~~~-------~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (503)
..+|.++++.++..+... ..+||+.+.+..+..++..+..+++||+|+++..+++.+++.+.+++...+....
T Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~ 250 (491)
T 4gc0_A 171 IIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLAT 250 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhH
Confidence 999999998887654322 1239999999999999999999999999999999999998888777655443322
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhhccCccccch----------------------------hhhHHHHHHHHHHHHHHH
Q 010721 295 KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF----------------------------IGDGALASLLVGVTNFAG 346 (503)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 346 (503)
................ ......+..+...... ...........++..+++
T Consensus 251 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4gc0_A 251 QAVQEIKHSLDHGRKT--GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTF 328 (491)
T ss_dssp HHHHHHHHHHHHHHHH--TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh--hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHH
Confidence 2221111111100000 0000000000000000 000334556677888899
Q ss_pred HHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccc
Q 010721 347 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR 426 (503)
Q Consensus 347 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (503)
.++.+++.||+|||+.++.+.....++.+.+....... ......+....++..++..+..++.+.+.+|.+|++.|
T Consensus 329 ~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R 404 (491)
T 4gc0_A 329 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 404 (491)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence 99999999999999999998888888777766544322 23344455556666677777888888999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------HcCCcchhHhHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhccCCCC
Q 010721 427 GKIMGFSFSVHWVCNFLVGLFFLDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTP 500 (503)
Q Consensus 427 ~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (503)
+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.++++||||+|+++|+|+.+|+++++
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcc
Confidence 999999999999999999988776643 34566788899999999999999999999999999999988766544
Q ss_pred C
Q 010721 501 G 501 (503)
Q Consensus 501 ~ 501 (503)
+
T Consensus 485 ~ 485 (491)
T 4gc0_A 485 T 485 (491)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=293.88 Aligned_cols=371 Identities=14% Similarity=0.059 Sum_probs=274.4
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
++..+..+++..+..+++.....+.+|.+.+++|+ +..+.|++.+++.+++.++++++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 45556777888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC-CCC
Q 010721 165 ILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-DDP 240 (503)
Q Consensus 165 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~-~~~ 240 (503)
+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++++++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 888999999999999999999999999999999999999999999999999999999999999988 555
Q ss_pred ch------------------------hHHHHHhhHHHHHHHHHHhcc--ccCChHHHHhcCChHHHHHHHHHHcCCcchH
Q 010721 241 HW------------------------WRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEIN 294 (503)
Q Consensus 241 ~~------------------------wr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (503)
+. ||+.|++.+++.++..+..++ .||+++...+++++.+..+..++..+++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWR 261 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHH
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHH
Confidence 44 999998877766665544433 4665442212222333334445554444433
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhh-ccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHH
Q 010721 295 KAIEEFQLVIKKDGSDLDSQWSELL-EEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 373 (503)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 373 (503)
............. .....+...+ ........ ....+.......++.+++.++.+++.||+++|+.+..+.++..++
T Consensus 262 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 262 WAVLAQFCYVGAQ--TACWSYLIRYAVEEIPGMT-AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHSTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhhhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 2222111111000 0001122222 11111111 123556677788999999999999999999999998888877777
Q ss_pred HHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 374 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 453 (503)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 453 (503)
.+++.+. ......+.. .+.+.+.....+....+..|.+|++ ++.+.++.. ...+|+.++|.+.|.+.+
T Consensus 339 ~~~~~~~---------~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 339 CLISAFA---------GGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHC---------CHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHc---------CCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 6665542 112222222 2333333344577778888989876 888888877 677999999999999999
Q ss_pred HcC-CcchhHhHHHHHHHHH
Q 010721 454 TFG-VAPVYAGFGGVSLLSA 472 (503)
Q Consensus 454 ~~g-~~~~~~~~~~~~~~~~ 472 (503)
..| +...|.+.+++.++..
T Consensus 407 ~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 407 AAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHTSSGGGGHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHH
Confidence 999 8888876655444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=300.00 Aligned_cols=381 Identities=14% Similarity=0.089 Sum_probs=275.0
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
++..+..++++.+..+++...+.+.+|.+.+++ . +..+.|++.+++.++..++++++|+++||+|||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 456678888888999999999999999999999 8 8889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 165 ILGAIISAQ----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 165 ~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|++++++.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999998866543
Q ss_pred chhHHHHHhhHHHHHHHHHH-hccccCChHHHHhcCChH---H--H--------HH----H-HHHHcCCcchHHHHHHHH
Q 010721 241 HWWRTMLYIASLPGFILALG-MQFTVESPRWLCKGGMLN---D--A--------KA----V-IANLWGESEINKAIEEFQ 301 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~--~--------~~----~-~~~~~~~~~~~~~~~~~~ 301 (503)
++||+.|++.+++.++..++ .+++||+|+....+..++ + . +. . .++..+++.........
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 261 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN- 261 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHH-
Confidence 33999999988887766544 455787765421111000 0 0 00 0 01111111111100000
Q ss_pred HHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhccc--CCchHHHhhHHHHH-HHHHHHH
Q 010721 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKE--GRQKLLIGSYLGMA-ISMLLVV 378 (503)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~ 378 (503)
............+...+......... ...+.......++.+++.++.+++.||+ ++|+.+..+..+.. ++.+++.
T Consensus 262 -~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 1pw4_A 262 -VFVYLLRYGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 00000000001122222211111111 1255677888899999999999999999 99988877766555 4433332
Q ss_pred HHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Q 010721 379 GATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-CNFLVGLFFLDLVETFGV 457 (503)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~ 457 (503)
+. + ...........+..+....+..+....+..|.+|++.|+++.|+.+.+.++ |..++|.+.|.+.+..|+
T Consensus 340 ~~---~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 340 MN---P----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp SC---C----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred Hh---c----ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 21 0 011222222222222222333455668889999999999999999999999 999999999999999999
Q ss_pred cchhHhHHHHHHHHHHHHHhh
Q 010721 458 APVYAGFGGVSLLSALFAYYF 478 (503)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~ 478 (503)
...|++.+++.+++.++.++.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 989988888887777665544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=272.67 Aligned_cols=392 Identities=14% Similarity=0.099 Sum_probs=248.9
Q ss_pred HHHHHHHHHhhhhhhcccchhh-HhHHHh-----hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHh
Q 010721 89 VLIASMSNFLFGYHIGVMNGPI-VSIAKE-----LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDT 161 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~-----~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~ 161 (503)
++.+++..+...+......+.+ +.+.++ +|. +..+.+++.+++.++..++++++|+++|| +|||+++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3344445555555444443334 444444 888 99999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCC--ccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 162 IPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|.+++|.+++.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988 77788889999999999999999999887
Q ss_pred CchhHHHHHhhHHHHHHHHHHhccc-cCChH----HHHhcCChHHHHHHHHH----------------HcCCcchHHH--
Q 010721 240 PHWWRTMLYIASLPGFILALGMQFT-VESPR----WLCKGGMLNDAKAVIAN----------------LWGESEINKA-- 296 (503)
Q Consensus 240 ~~~wr~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-- 296 (503)
.+ ||+.|++.++..++..+..++. ++..+ ....+.+.++.++..+. ..+.......
T Consensus 173 ~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (491)
T 4aps_A 173 AG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN 251 (491)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 77 9999999877776665544432 22110 00011111222221111 0000000000
Q ss_pred ----------------------------------HHHH-HHHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHH
Q 010721 297 ----------------------------------IEEF-QLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGV 341 (503)
Q Consensus 297 ----------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (503)
.... ..............+...+......... ...+.......+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 330 (491)
T 4aps_A 252 LLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-FPVSWFQSLNPL 330 (491)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-SCSGGGTTHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-cCHHHHhccchH
Confidence 0000 0000000000000000000000000000 012334556677
Q ss_pred HHHHHHHhHHHhhcccCCchHHH-----hhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcccccccc
Q 010721 342 TNFAGALCASYLMDKEGRQKLLI-----GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLV 416 (503)
Q Consensus 342 ~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (503)
..+++.++.+++.||++||+... .+..+.+++.+++.............+........++.+.......+....+
T Consensus 331 ~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 410 (491)
T 4aps_A 331 FIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSV 410 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 78888999999999999986544 5555666665555443211100001122222222222222233335667889
Q ss_pred ccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCCC
Q 010721 417 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGR 485 (503)
Q Consensus 417 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (503)
+.|.+|++.|+++.|+.+...++|..++|.+.+.+.+ .++...|.+.++++++..++.++..++.+++
T Consensus 411 ~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 411 TTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887765 4667788888888877777666665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-32 Score=258.36 Aligned_cols=357 Identities=13% Similarity=0.047 Sum_probs=248.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
++++++..++..++...+.+.+|.+.+++|. +..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 3566777888889999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHH
Q 010721 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (503)
Q Consensus 169 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~ 248 (503)
++.+++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++++.+..+ ||+.|+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 158 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988767 999999
Q ss_pred hhHHHHHHHHH-HhccccCChHHHHhcCChHH-HHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCcccc
Q 010721 249 IASLPGFILAL-GMQFTVESPRWLCKGGMLND-AKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326 (503)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
+.+++.++..+ ..+++||+++...++++..+ .++..+ ++.......... ...........+...+.......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~ 232 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFG----NSGFNCYLLMLI--GGLAGIAAFEACSGVLMGAVLGL 232 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhc----CcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCC
Confidence 98888877766 44557877653211111100 001111 000000000000 00000000001111110000000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHH-HHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH
Q 010721 327 AFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG-MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF 405 (503)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (503)
.....+.......++.+++.++.+++.||.+++ ...+... ..++..++..... ...+.+.......+.+..
T Consensus 233 -~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 233 -SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-----GVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-----ccccHHHHHHHHHHHHHH
Confidence 111245667777888899999999999998872 2222222 2222221111100 001122222222222222
Q ss_pred hcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHh
Q 010721 406 AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG 463 (503)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 463 (503)
.....+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+..++...+.+
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 22335667788889998 7899999999999999999999999999887776655544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=243.06 Aligned_cols=169 Identities=15% Similarity=0.106 Sum_probs=144.9
Q ss_pred HHHHHHhhhhhhcccchhhH-hHHHhhC------CCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHhHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIV-SIAKELG------FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIP 163 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~------~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~ 163 (503)
+.+..++..+......+.++ .+.+++| . +..+.+++.+++.++..++++++|+++||+ |||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33444444444444444444 5677888 7 888999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhH---HHHHHHHHHHHHHHhhccCCCC
Q 010721 164 LILGAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL---CQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 164 ~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
.+++.+++++++ +++.++++|++.|++.+...+...+++.|++|+++|+++.+. ++.+.++|.+++|.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999 999999999999999999999999999999999999877666 8999999999999999998877
Q ss_pred CchhHHHHHhhHHHHHHHHHHhcc
Q 010721 240 PHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 240 ~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
.+ ||+.|++.+++.++..+..++
T Consensus 175 ~g-~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 175 FG-AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred cc-HHHHHHHHHHHHHHHHHHHHH
Confidence 77 999999988877766555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-29 Score=240.55 Aligned_cols=382 Identities=12% Similarity=-0.001 Sum_probs=231.0
Q ss_pred HHHHHHHHhhhhhhcccchhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+.+....++..+......+.+|.+ ++++|+ +..+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~ 87 (417)
T 2cfq_A 10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMF 87 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 334444455555555666777764 556888 88899999999999999999999999999999999999887765532
Q ss_pred ---HHHHhhhhH-HHHHHHHHHHHhhhhhhchhhhhhhhhcCCC--CCccchhhHHHHHHHHHHHHHHHhhccCCCCCch
Q 010721 169 ---IISAQAHSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 169 ---~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 242 (503)
....+++.. ..++..+++.|++.+...+.....+.++.++ ++++...+....+..+|..++|.+++++.+ .+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~- 165 (417)
T 2cfq_A 88 APFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN- 165 (417)
T ss_dssp HHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-
Confidence 212233222 1244567777776666555555555555543 346777788877888899999999888765 34
Q ss_pred hHHHHHhhHHHHHHHHHHhccccCCh-HHHH-hc----CChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccch
Q 010721 243 WRTMLYIASLPGFILALGMQFTVESP-RWLC-KG----GMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS 316 (503)
Q Consensus 243 wr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (503)
||+.|++.++..++..+..++.+|++ +... ++ ++++...+..++..+++................ .....+.
T Consensus 166 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 243 (417)
T 2cfq_A 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY--DVFDQQF 243 (417)
T ss_dssp SHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHH--HHHHHHH
Confidence 99999987777665555555554433 1100 00 000000111122222222111111000000000 0000011
Q ss_pred hhhccCcccc--chhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 010721 317 ELLEEPHSRV--AFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 394 (503)
Q Consensus 317 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (503)
..+....+.. ......+....+..++.+++.++.++++||++||+.+..+..+.+++.+++.+. . +.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~-----~~~~~ 315 (417)
T 2cfq_A 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---T-----SALEV 315 (417)
T ss_dssp HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---C-----SHHHH
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---c-----cHHHH
Confidence 1110000100 001112455666677888899999999999999998887777666654444221 0 11122
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCcccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHH
Q 010721 395 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS-FSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL 473 (503)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 473 (503)
.....+...+. ....+....+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|.+.+++++++.+
T Consensus 316 ~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~ 394 (417)
T 2cfq_A 316 VILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTL 394 (417)
T ss_dssp HHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22111112111 112233467889999999999999994 7888899999999999999988888888888888887777
Q ss_pred HHHhhccCCCCCC
Q 010721 474 FAYYFIVETKGRS 486 (503)
Q Consensus 474 ~~~~~~~~~~~~~ 486 (503)
+.+...+|+++.+
T Consensus 395 ~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 395 ISVFTLSGPGPLS 407 (417)
T ss_dssp HHTTSSCCSCTTC
T ss_pred HHHhhhcCCCchH
Confidence 6666566655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=141.81 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=145.7
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh--cchHHHHHHhHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQIDTIPLI 165 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~ 165 (503)
++.+.+..++..+........+|.+.++ +|. +..+.+++.+.+.++..++.++.|++.||+ |||+.+.++.++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4444555555555555566667777666 788 889999999999999999999999999999 99999988877776
Q ss_pred -HHHHHHHhh--hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHH-HHHHHHHhhccCCCCCc
Q 010721 166 -LGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPH 241 (503)
Q Consensus 166 -~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~~~~~ 241 (503)
++.++..+. .+.+.+.++.++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666665 37888888899999999999999999999999999999999999999999 99999999999988888
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccc
Q 010721 242 WWRTMLYIASLPGFILALGMQFTV 265 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~~~ 265 (503)
|+..|++.+++.++..+..++.+
T Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 412 -WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877766665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.9e-13 Score=128.85 Aligned_cols=168 Identities=11% Similarity=-0.018 Sum_probs=131.3
Q ss_pred HHHHHHhhhhhhcccchhhHhH-HHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSI-AKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i-~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 169 (503)
..+..++...........+|.+ .++ +|. +..+.++..+.+.++..++.++.|+++||+|||+++.++.++.+++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3333344444444444555555 544 488 899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 170 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
+..+.++.+.++.. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++
T Consensus 341 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 417 (438)
T 3o7q_A 341 ISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_dssp HHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred HHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 98888887765554 8899999999999999999999876 888888776 56699999999999988765447788877
Q ss_pred hHHHHHHHHHHhccc
Q 010721 250 ASLPGFILALGMQFT 264 (503)
Q Consensus 250 ~~~~~~~~~~~~~~~ 264 (503)
.++..++..+..++.
T Consensus 418 ~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 418 PALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555544444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=126.62 Aligned_cols=163 Identities=12% Similarity=-0.021 Sum_probs=125.7
Q ss_pred HhhhhhhcccchhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHH-----HHhHHHHHHHHH
Q 010721 97 FLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-----IDTIPLILGAII 170 (503)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~ 170 (503)
+............++.+.++ ++. +....+++.+...++..++.++.|++.||+|||+... ++.++.+++.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 293 VLFWAIEEQGSVVLATFAAERVDS--SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHSCCC--SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccHHHHHHHHHHhcc--CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 33333334444455555444 555 5466788889999999999999999999999987655 777777777777
Q ss_pred HHhhh---------hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc
Q 010721 171 SAQAH---------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (503)
Q Consensus 171 ~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 241 (503)
..+.. +.+.++++-++.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~- 449 (491)
T 4aps_A 371 MAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS- 449 (491)
T ss_dssp THHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS-
T ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 66643 77778888999999999999999999999999999999999999999999999999999887643
Q ss_pred hhHHHHHhhHHHHHHHHHHhcc
Q 010721 242 WWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
+.+.|++.+++.++..+..++
T Consensus 450 -~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 450 -EVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp -TTHHHHHTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 666777777776666555444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.7e-13 Score=128.99 Aligned_cols=145 Identities=12% Similarity=0.016 Sum_probs=122.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhh
Q 010721 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYI 202 (503)
Q Consensus 123 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 202 (503)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888889999999999999999999999999988888888888888888888888888888877777788899
Q ss_pred hhcCCCCCccchhhH-HHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc-ccCCh
Q 010721 203 SEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVESP 268 (503)
Q Consensus 203 ~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~~~~ 268 (503)
.|.+|++.|+.+.++ ++.+..+|.+++|.+++++.+..+ ++..|.+.+++.++..+..++ .+|.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 488889999999999998887666 889998888887777655444 55543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-12 Score=123.43 Aligned_cols=169 Identities=17% Similarity=0.103 Sum_probs=119.6
Q ss_pred HhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh--
Q 010721 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-- 174 (503)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-- 174 (503)
+........+....+.+.++.+. +............+...++.++.+++.||+|||+.++.+.....++.+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 33333444445556778888877 66667777778888899999999999999999999999988888877766543
Q ss_pred ---hhHHHHHHH-HHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc-----hhHH
Q 010721 175 ---HSLDEMLWG-RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-----WWRT 245 (503)
Q Consensus 175 ---~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~-----~wr~ 245 (503)
++...++.. -+..+++. ...+....+.+|.+|.+.|++++++......+|.++++.+...+.+... ++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred cccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 122222222 22223332 3456777899999999999999999999999999888877665543210 1556
Q ss_pred HHHhhHHHHHHHHHHh-ccccCCh
Q 010721 246 MLYIASLPGFILALGM-QFTVESP 268 (503)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~~~~~~ 268 (503)
.|++.++++++..+.. +++||+.
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHheecCCC
Confidence 7777777777765544 5689974
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-11 Score=115.97 Aligned_cols=157 Identities=16% Similarity=0.061 Sum_probs=117.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHH-HHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP-LIL 166 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~ 166 (503)
++...+..++............|.+.++ +|. ++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~ 276 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL--SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHH--HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4444455555555555555566665544 888 8889999999999999999999999999999833 233322 222
Q ss_pred HHH--HHHh--hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCch
Q 010721 167 GAI--ISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 167 ~~~--~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 242 (503)
+.. .... .++.+.+++.-++.|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~- 354 (375)
T 2gfp_A 277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ- 354 (375)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence 222 2222 2477778888999999999999999999999998 789999999999999999999999888766544
Q ss_pred hHHHHHhhH
Q 010721 243 WRTMLYIAS 251 (503)
Q Consensus 243 wr~~~~~~~ 251 (503)
|+..+++.+
T Consensus 355 ~~~~~~~~~ 363 (375)
T 2gfp_A 355 GSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 777666543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-09 Score=106.75 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccc-CCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (503)
.+...+...++..++.++.|+++||+ |||+.+..+.++..++.+++.+.. .+...+....++.+.......
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE--------HSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS--------SCHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHHhccccc
Confidence 44667788889999999999999999 999999999888888877776521 022223333333333333445
Q ss_pred ccccccccccCCcccchhhHHH---HHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHH
Q 010721 411 PVTGLVIPELSSNRTRGKIMGF---SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 476 (503)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 476 (503)
+...+++.|.+|+++|+++.++ .+...++|..++|.+.+.+.+..||+..|.+.+++.++..++..
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999876666 88889999999999999999988999999888777666555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 503 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-20 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 5e-14 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 92.1 bits (227), Expect = 1e-20
Identities = 56/421 (13%), Positives = 115/421 (27%), Gaps = 19/421 (4%)
Query: 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
+ + + Y + + E GF + G +S GS+
Sbjct: 25 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISIAYGFSKFIMGSV 82
Query: 148 ADKLGCRRTFQIDTIPLILGAII----SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYIS 203
+D+ R I + S+ M FL G G+ +
Sbjct: 83 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142
Query: 204 EVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263
K RG + ++ +G L + + W LY+ + ++AL
Sbjct: 143 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202
Query: 264 TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE------------FQLVIKKDGSDL 311
+ C + + K + + E + + + +
Sbjct: 203 MMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVY 262
Query: 312 DSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMA 371
++ L P S + + L +
Sbjct: 263 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 322
Query: 372 ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMG 431
M LV AT + + + + I G + GL EL+ + G G
Sbjct: 323 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382
Query: 432 FSFSVHWVCNFLVG-LFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI 490
F+ ++ + V+ FG + G S+L+ + ++ K R + +
Sbjct: 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLL 442
Query: 491 E 491
+
Sbjct: 443 Q 443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 71.3 bits (173), Expect = 5e-14
Identities = 50/411 (12%), Positives = 113/411 (27%), Gaps = 11/411 (2%)
Query: 87 PHVLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSG 145
+ + + F + + +G + + + G++ + + + G
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFG 64
Query: 146 SLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGL----GIGVNTVLVPIY 201
L+DKLG R+ +++ + + + + +G
Sbjct: 65 LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA 124
Query: 202 ISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261
+ R S + + +L I + + ++ S ILA+ +
Sbjct: 125 VEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184
Query: 262 QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE 321
F A +L E+ + + + L + G +
Sbjct: 185 FFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFA 244
Query: 322 PHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 381
F G + + G G L + +M IG + ++ ++
Sbjct: 245 NFFTS-FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI 303
Query: 382 SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSV-HWVC 440
+ + IL TL I R I F +
Sbjct: 304 IGSSFATSALEVVILKTLHMF--EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361
Query: 441 NFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIE 491
+ + ++ E+ G Y G V+L L + + + SL +
Sbjct: 362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 503 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.41 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-37 Score=301.58 Aligned_cols=387 Identities=14% Similarity=0.067 Sum_probs=264.9
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
+|..+..++++.+..+++...++.+.|.++ |+|+ +..+.|++.+++.+++.++++++|+++||+|||+++.++.++.
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTT--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 466677777888888888888888888776 5788 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 165 ILGAIISAQA----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 165 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
+++.++++++ ++++.++++|++.|++.+...+...+++.|++|+++|++++++++.+..+|.++++.+++.+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 9999998876 477889999999999999999999999999999999999999999999999999999888766554
Q ss_pred chhHHHHHhhHHHHHHHHHHhcc-ccCChHHHHhcCC----hHHH---HHH-----------HHHHcCCcchHHHHHHHH
Q 010721 241 HWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGM----LNDA---KAV-----------IANLWGESEINKAIEEFQ 301 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~---~~~-----------~~~~~~~~~~~~~~~~~~ 301 (503)
++||+.|++.+++.++..++.++ .+++|+....... .+.. .+. .+...+.+........
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 257 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA-- 257 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH--
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHH--
Confidence 44999999988877776555544 5555432211100 0000 000 0011111110000000
Q ss_pred HHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHh
Q 010721 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 381 (503)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 381 (503)
.............+...+........ ....+.......+..+++.++.|++.||+++++..........+.........
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (447)
T d1pw4a_ 258 NVFVYLLRYGILDWSPTYLKEVKHFA-LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhcchhhhhhhcccccccc-cchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH
Confidence 00000000000111111111111111 12255667788889999999999999999987655544444333333333222
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHcCCcch
Q 010721 382 SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVC-NFLVGLFFLDLVETFGVAPV 460 (503)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g-~~~~~~~~g~l~~~~g~~~~ 460 (503)
... ..+........+..+....+..+....+..|.+|++.||++.|+.+.+.+++ ..++|.+.|.+.|..|+...
T Consensus 337 ~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~ 412 (447)
T d1pw4a_ 337 MNP----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 412 (447)
T ss_dssp SCC----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred hcc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 111 1122222222222222233345666788899999999999999999988875 56688999999999999988
Q ss_pred hHhHHHHHHHHHHHHHhhccC
Q 010721 461 YAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~ 481 (503)
|.+.+++++++.++.+.+.++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 413 FMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888777777666555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=6.9e-29 Score=237.56 Aligned_cols=388 Identities=11% Similarity=-0.024 Sum_probs=252.4
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHh-HHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
.+..+.+.+..++..+..+...+.+|. +.+++|+ |..++|++.+++.+++.++++++|+++||+|||++++++..+.
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 344667777778888888888888886 5677899 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHH----HHHHHHHHhhhhhhchhhhhhhhhcCCC--CCccchhhHHHHHHHHHHHHHHHhhccCCC
Q 010721 165 ILGAIISAQAHSLDEM----LWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 238 (503)
.++.++..+..+.... ++.+++.+.+.+...........+..++ +++....+........|..+++.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence 9999888887666554 4455555555555555544444444332 335667778888889999999999988776
Q ss_pred CCchhHHHHHh-hHHHHHHHHHHhccccCChHHH-----HhcCChHHHHHHHHHHcCCcchHHHHHHHH-HHHHhcCCCC
Q 010721 239 DPHWWRTMLYI-ASLPGFILALGMQFTVESPRWL-----CKGGMLNDAKAVIANLWGESEINKAIEEFQ-LVIKKDGSDL 311 (503)
Q Consensus 239 ~~~~wr~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 311 (503)
.. |+..+.. .....+...+..+..++++... .++.+.....+...+............... ........
T Consensus 164 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (417)
T d1pv7a_ 164 IN--NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVF-- 239 (417)
T ss_dssp HC--HHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHH--
T ss_pred cc--ccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhh--
Confidence 54 4444444 4444455555556666554311 111111111111112222211111111000 00000000
Q ss_pred cccchhhhccC--ccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcch
Q 010721 312 DSQWSELLEEP--HSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 389 (503)
Q Consensus 312 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (503)
.......... ..................++..++..+.+++.||.++|+.+..+..+..++.+.+.+.
T Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 309 (417)
T d1pv7a_ 240 -DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--------- 309 (417)
T ss_dssp -HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred -hccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc---------
Confidence 0000000000 0001111124455667778888999999999999999999998888887777766542
Q ss_pred hhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHH
Q 010721 390 SHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF-SVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 468 (503)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 468 (503)
.+........++.+.......+...+++.|.+|++.|+++.|+.. ....+|..++|.+.|++.|..|++..|++.++++
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~ 389 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 122222222222222222334667788999999999999999865 5567999999999999999999999999999888
Q ss_pred HHHHHHHHhhccCCCCCCHHH
Q 010721 469 LLSALFAYYFIVETKGRSLEE 489 (503)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ 489 (503)
++..++..+.+++++..+..+
T Consensus 390 ~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 390 LGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHhhcCCCccchhH
Confidence 888887777777666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=2.1e-15 Score=142.73 Aligned_cols=142 Identities=14% Similarity=0.062 Sum_probs=128.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 201 (503)
+....+...+...++..++.++.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+...++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (417)
T d1pv7a_ 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 55667888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCccchhhHH-HHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccc
Q 010721 202 ISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (503)
Q Consensus 202 i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 264 (503)
+.|.+|+++|+++.++. +....+|..++|.+++++.+..+ |+..|++.+++.++..++.+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999975 56788999999999999998888 9999999888887776555543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=6.6e-13 Score=126.93 Aligned_cols=171 Identities=12% Similarity=0.036 Sum_probs=126.2
Q ss_pred HHHHHHHHhhhhhhcccchhhH-hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+.+.+..++............+ .+.+.++. +..+.++..+.+.++..++.++.|++.||++||+......+...+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 329 (447)
T d1pw4a_ 252 WYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 329 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcchhhhhhhccccccc--ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHH
Confidence 3333333433333333333344 44556677 88899999999999999999999999999998765544433333322
Q ss_pred HHHH-----hhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHH-HHHHHHHhhccCCCCCch
Q 010721 169 IISA-----QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 169 ~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~~~~~~ 242 (503)
+... ...+.+..+++-++.|++.+...+....++.|.+|+++|+.+.|+.+....+ |.+++|++.+++.+..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g- 408 (447)
T d1pw4a_ 330 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG- 408 (447)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 2222 1357788888889999999988999999999999999999999998877666 67788999999988888
Q ss_pred hHHHHHhhHHHHHHHHHHhcc
Q 010721 243 WRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 243 wr~~~~~~~~~~~~~~~~~~~ 263 (503)
|+..|++.++..++..++..+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 409 WDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999998877777666555544
|