Citrus Sinensis ID: 010724

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--

MKILSKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPFSNRYT

cHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHccccccccccccEEEcEEEEEEEEEEcEEEEEEEEccEEEEEcccEEEEEEEccEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccEEEEEEEEEEEccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHcccEEEEEcccccccccccccHHHHccccccccccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEccEEEEEEcccccccccccccccccccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcHHHHHHHHHHHHHHHHHHHcccccccccccEEEcEEEEEEEEEEEEEEEEEEcccccEEccccEEEEEEEcEEEEEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEccccccEEEEEEccccEEcEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEEcccccccccccEEEcEEEEEEccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEccEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccEEEEEccEEEEEEEEEEcccccccccccccccccc

MKILSKILPLLLLLITSsffssqaqvgasnqeSFTSIIISQTGLDFVKDLLITKAISSiiplalpkieravkipilGNVRMVLSNITIYNidvlssyvkpgdtGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDcgcyvkdisikldggASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLqslpkeipvddhaslnitfvdnplltsssiefDINGLFTarkkasipnyynsnlqppvfcsdqskmlGISLDEAVLNSASALYYDAEFMQwtvdkvpdqsllntagwrfiipqlyrkypnddmnlnislssppvirvaednidatVHADLIIDVlesgevipVACISLVIHGSCSVKILrnnlggsvklngftmsltwskigkLRLYLIQPVVWAVIQTVFVPyvnshlgqgfplpiihgftvksAEIICssskitvcsdvayadshnlnqifipfsnryt

MKILSKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISsiiplalpkierAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADshnlnqifipfsnryt

MkilskilplllllitssffssQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPFSNRYT

***LSKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPF*****

****SKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYY**************KMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQI*********

MKILSKILPLLLLLITSSFFSS********QESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPFSNRYT

*KILSKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPFS****

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SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		502	2.2.26 [Sep-21-2011]
Q9MAU5		488	Putative BPI/LBP family p	yes	no	0.918	0.944	0.646	0.0
Q8VYC2		515	Putative BPI/LBP family p	no	no	0.934	0.910	0.422	1e-113
Q2TBI0		481	Lipopolysaccharide-bindin	yes	no	0.824	0.860	0.230	2e-27
P18428		481	Lipopolysaccharide-bindin	yes	no	0.810	0.846	0.232	2e-27
P17213		487	Bactericidal permeability	no	no	0.806	0.831	0.235	1e-22
Q61805		481	Lipopolysaccharide-bindin	yes	no	0.850	0.887	0.213	2e-21
Q6AXU0		482	Bactericidal permeability	yes	no	0.850	0.885	0.225	2e-21
P17453		482	Bactericidal permeability	no	no	0.810	0.844	0.239	1e-18
Q28739		445	Bactericidal permeability	no	no	0.635	0.716	0.239	5e-17
Q63313		481	Lipopolysaccharide-bindin	no	no	0.842	0.879	0.213	1e-16

>sp\|Q9MAU5\|Y1049_ARATH Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1	Back alignment and function desciption

 Score =  637 bits (1642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/461 (64%), Positives = 382/461 (82%)

Query: 32  ESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNI 91
           +SFTS+++SQ GLDFVK+LL+ KAI+SIIPL +P+IE+++KIP LG + +V+SN+TIY +
Sbjct: 26  DSFTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKSMKIPFLGGIDVVVSNLTIYEL 85

Query: 92  DVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLT 151
           DV SSYVK G+TGVV VA GTTCNLS NW Y Y+TWL PIEISD GIASVQV+GM++GL+
Sbjct: 86  DVASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPPIEISDQGIASVQVQGMEIGLS 145

Query: 152 LGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLK 211
           LGL++ +G LKLSL +CGC+V+DI+I+L+GGASW YQGM+NAF++QI S+VE+ I KKL 
Sbjct: 146 LGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVESTIAKKLT 205

Query: 212 EGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYY 271
           EG+S LDS LQSLPKEIPVDD+A LN+TF  +P+L +SSI F+I+GLFT  +   +   +
Sbjct: 206 EGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETNQVLKSF 265

Query: 272 NSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFI 331
                  V C   SKMLGIS+DEAV NSA+ALYY+A+F+QW VDK+P+QSLLNTA WRFI
Sbjct: 266 FKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNTARWRFI 325

Query: 332 IPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVI 391
           IPQLY+KYPN DMNLNISLSSPP+++++E  + A V+ADL+I+VL++ +VIPVACISL+I
Sbjct: 326 IPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVACISLMI 385

Query: 392 HGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLG 451
            GS +++++ NNLGGSV L  F+MSL WS IG L L+L+QP+VW VIQTVFVPY N HL 
Sbjct: 386 RGSGALRVMGNNLGGSVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVIQTVFVPYANDHLE 445

Query: 452 QGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQ 492
           +GFPLPI+HGFT+++AEIICS S+ITVCSDVAY DS    Q
Sbjct: 446 KGFPLPIMHGFTLQNAEIICSESEITVCSDVAYLDSSQQPQ 486

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8VYC2\|Y2070_ARATH Putative BPI/LBP family protein At3g20270 OS=Arabidopsis thaliana GN=At3g20270 PE=2 SV=1	Back alignment and function description

>sp\|Q2TBI0\|LBP_BOVIN Lipopolysaccharide-binding protein OS=Bos taurus GN=LBP PE=2 SV=1	Back alignment and function description

>sp\|P18428\|LBP_HUMAN Lipopolysaccharide-binding protein OS=Homo sapiens GN=LBP PE=1 SV=3	Back alignment and function description

>sp\|P17213\|BPI_HUMAN Bactericidal permeability-increasing protein OS=Homo sapiens GN=BPI PE=1 SV=4	Back alignment and function description

>sp\|Q61805\|LBP_MOUSE Lipopolysaccharide-binding protein OS=Mus musculus GN=Lbp PE=2 SV=2	Back alignment and function description

>sp\|Q6AXU0\|BPI_RAT Bactericidal permeability-increasing protein OS=Rattus norvegicus GN=Bpi PE=2 SV=1	Back alignment and function description

>sp\|P17453\|BPI_BOVIN Bactericidal permeability-increasing protein OS=Bos taurus GN=BPI PE=2 SV=2	Back alignment and function description

>sp\|Q28739\|BPI_RABIT Bactericidal permeability-increasing protein (Fragment) OS=Oryctolagus cuniculus GN=BPI PE=2 SV=1	Back alignment and function description

>sp\|Q63313\|LBP_RAT Lipopolysaccharide-binding protein OS=Rattus norvegicus GN=Lbp PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		502
224131712		492	predicted protein [Populus trichocarpa]	0.944	0.963	0.725	0.0
225447199		498	PREDICTED: putative BPI/LBP family prote	0.946	0.953	0.713	0.0
18390462		488	lipid-binding serum glycoprotein-like pr	0.918	0.944	0.646	1e-180
21593323		488	unknown [Arabidopsis thaliana]	0.918	0.944	0.644	1e-179
255576107		417	Lipopolysaccharide-binding protein precu	0.826	0.995	0.725	1e-179
297843298		501	hypothetical protein ARALYDRAFT_887673 [	0.918	0.920	0.648	1e-179
357493077		530	hypothetical protein MTR_5g084690 [Medic	0.916	0.867	0.627	1e-168
449490318		495	PREDICTED: putative BPI/LBP family prote	0.934	0.947	0.582	1e-158
359807236		441	uncharacterized protein LOC100808142 pre	0.838	0.954	0.641	1e-157
449441668		495	PREDICTED: putative BPI/LBP family prote	0.934	0.947	0.582	1e-157

>gi\|224131712\|ref\|XP_002321159.1\| predicted protein [Populus trichocarpa] gi\|222861932\|gb\|EEE99474.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/477 (72%), Positives = 401/477 (84%), Gaps = 3/477 (0%)

Query: 21  SSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVR 80
           SSQ Q     QE+FT+I+ISQ GLDF+K+LLIT+AISSIIPL LP I +  K P LG V 
Sbjct: 19  SSQIQ---QEQEAFTTIVISQQGLDFLKNLLITQAISSIIPLKLPNITKTAKFPFLGYVH 75

Query: 81  MVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIAS 140
           M+LSNITIY + VL SYVKPGDTG+  +A GTTCNLS +W YEY TWL P+EISD G AS
Sbjct: 76  MLLSNITIYQLQVLDSYVKPGDTGIAIIASGTTCNLSMDWSYEYNTWLFPVEISDKGHAS 135

Query: 141 VQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVS 200
           VQVEGM+VGLTLGL+ Q+GTLKLSL+DCGCYVKDISIKLDGGASWLYQGMI+AFEEQI S
Sbjct: 136 VQVEGMEVGLTLGLKNQEGTLKLSLMDCGCYVKDISIKLDGGASWLYQGMIDAFEEQIGS 195

Query: 201 AVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFT 260
           AVENAITK L EGI KLD  LQSLPKEIPVDD AS+N+TFVDNP L++SS+ FDINGLFT
Sbjct: 196 AVENAITKNLGEGILKLDLFLQSLPKEIPVDDDASINVTFVDNPSLSNSSVGFDINGLFT 255

Query: 261 ARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQ 320
           ARKK  I  YY  N  P V C++ +KMLGISLDEAV NSASALYYDA+FMQW VDK+PDQ
Sbjct: 256 ARKKVPITMYYYENTLPSVLCTEPTKMLGISLDEAVFNSASALYYDAKFMQWIVDKIPDQ 315

Query: 321 SLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGE 380
           SLLNTAGWRFI+PQLY+KYPNDDMN+N+SLSSPP++R++E N+DATV+ADLIIDVLE+ +
Sbjct: 316 SLLNTAGWRFIVPQLYKKYPNDDMNMNLSLSSPPILRISEHNLDATVYADLIIDVLEADQ 375

Query: 381 VIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQT 440
           VIPVACISLVI GS SV I  NNL GSVKLN F+MS  WS IG LR+YLIQP++W +IQT
Sbjct: 376 VIPVACISLVIRGSGSVGIAGNNLVGSVKLNDFSMSSKWSNIGNLRMYLIQPLMWTLIQT 435

Query: 441 VFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPF 497
           VFVP+ N+HL +GFPLPIIHGFTV++AEII S+SKITVC DVA+ +S ++ Q   P 
Sbjct: 436 VFVPHANAHLAKGFPLPIIHGFTVQNAEIIFSTSKITVCGDVAFRESLSIKQASGPL 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225447199\|ref\|XP_002272020.1\| PREDICTED: putative BPI/LBP family protein At3g20270 [Vitis vinifera] gi\|297739241\|emb\|CBI28892.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi|18390462|ref|NP_563724.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana] gi|75264940|sp|Q9MAU5.1|Y1049_ARATH RecName: Full=Putative BPI/LBP family protein At1g04970; Flags: Precursor gi|7211993|gb|AAF40464.1|AC004809_22 ESTs gb|T76367 and gb|AA404955 come from this gene [Arabidopsis thaliana] gi|28393732|gb|AAO42277.1| unknown protein [Arabidopsis thaliana] gi|28973365|gb|AAO64007.1| unknown protein [Arabidopsis thaliana] gi|332189650|gb|AEE27771.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|21593323\|gb\|AAM65272.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255576107\|ref\|XP_002528948.1\| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis] gi\|223531594\|gb\|EEF33422.1\| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297843298\|ref\|XP_002889530.1\| hypothetical protein ARALYDRAFT_887673 [Arabidopsis lyrata subsp. lyrata] gi\|297335372\|gb\|EFH65789.1\| hypothetical protein ARALYDRAFT_887673 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357493077\|ref\|XP_003616827.1\| hypothetical protein MTR_5g084690 [Medicago truncatula] gi\|355518162\|gb\|AES99785.1\| hypothetical protein MTR_5g084690 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449490318\|ref\|XP_004158569.1\| PREDICTED: putative BPI/LBP family protein At1g04970-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359807236\|ref\|NP_001241365.1\| uncharacterized protein LOC100808142 precursor [Glycine max] gi\|255641286\|gb\|ACU20920.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|449441668\|ref\|XP_004138604.1\| PREDICTED: putative BPI/LBP family protein At1g04970-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		502
TAIR\|locus:2010592		488	AT1G04970 [Arabidopsis thalian	0.908	0.934	0.651	8.7e-166
TAIR\|locus:2092334		722	AT3G20270 [Arabidopsis thalian	0.892	0.620	0.432	8.8e-102
ZFIN\|ZDB-GENE-070912-360		472	si:dkey-11f4.4 "si:dkey-11f4.4	0.880	0.936	0.231	1.6e-31
UNIPROTKB\|F1MNN7		481	LBP "Lipopolysaccharide-bindin	0.818	0.854	0.234	1e-30
UNIPROTKB\|P18428		481	LBP "Lipopolysaccharide-bindin	0.816	0.852	0.234	5.3e-30
UNIPROTKB\|Q2TBI0		481	LBP "Lipopolysaccharide-bindin	0.818	0.854	0.232	1.2e-29
UNIPROTKB\|I3L5U6		481	LBP "Uncharacterized protein"	0.818	0.854	0.231	2.4e-27
UNIPROTKB\|I3LFA0		483	BPI "Uncharacterized protein"	0.818	0.850	0.244	1.1e-26
UNIPROTKB\|P17453		482	BPI "Bactericidal permeability	0.806	0.840	0.240	2e-26
UNIPROTKB\|P17213		487	BPI "Bactericidal permeability	0.812	0.837	0.229	9.4e-26

TAIR\|locus:2010592 AT1G04970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1613 (572.9 bits), Expect = 8.7e-166, P = 8.7e-166
 Identities = 297/456 (65%), Positives = 381/456 (83%)

Query:    32 ESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNI 91
             +SFTS+++SQ GLDFVK+LL+ KAI+SIIPL +P+IE+++KIP LG + +V+SN+TIY +
Sbjct:    26 DSFTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKSMKIPFLGGIDVVVSNLTIYEL 85

Query:    92 DVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLT 151
             DV SSYVK G+TGVV VA GTTCNLS NW Y Y+TWL PIEISD GIASVQV+GM++GL+
Sbjct:    86 DVASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPPIEISDQGIASVQVQGMEIGLS 145

Query:   152 LGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLK 211
             LGL++ +G LKLSL +CGC+V+DI+I+L+GGASW YQGM+NAF++QI S+VE+ I KKL 
Sbjct:   146 LGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVESTIAKKLT 205

Query:   212 EGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYY 271
             EG+S LDS LQSLPKEIPVDD+A LN+TF  +P+L +SSI F+I+GLFT  +   +   +
Sbjct:   206 EGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETNQVLKSF 265

Query:   272 NSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFI 331
                    V C   SKMLGIS+DEAV NSA+ALYY+A+F+QW VDK+P+QSLLNTA WRFI
Sbjct:   266 FKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNTARWRFI 325

Query:   332 IPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVI 391
             IPQLY+KYPN DMNLNISLSSPP+++++E  + A V+ADL+I+VL++ +VIPVACISL+I
Sbjct:   326 IPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVACISLMI 385

Query:   392 HGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLG 451
              GS +++++ NNLGGSV L  F+MSL WS IG L L+L+QP+VW VIQTVFVPY N HL 
Sbjct:   386 RGSGALRVMGNNLGGSVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVIQTVFVPYANDHLE 445

Query:   452 QGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADS 487
             +GFPLPI+HGFT+++AEIICS S+ITVCSDVAY DS
Sbjct:   446 KGFPLPIMHGFTLQNAEIICSESEITVCSDVAYLDS 481

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR\|locus:2092334 AT3G20270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-070912-360 si:dkey-11f4.4 "si:dkey-11f4.4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MNN7 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P18428 LBP "Lipopolysaccharide-binding protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2TBI0 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L5U6 LBP "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LFA0 BPI "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P17453 BPI "Bactericidal permeability-increasing protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P17213 BPI "Bactericidal permeability-increasing protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAU5	Y1049_ARATH	No assigned EC number	0.6464	0.9183	0.9446	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00141080	hypothetical protein (493 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		502
cd00026		200	cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bac	2e-50
cd00025		223	cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bac	1e-43
cd00264		208	cd00264, BPI, BPI/LBP/CETP domain; Bactericidal pe	5e-22
smart00329		202	smart00329, BPI2, BPI/LBP/CETP C-terminal domain	2e-21
pfam02886		238	pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family	3e-21
pfam01273		163	pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family,	1e-18
cd00264		208	cd00264, BPI, BPI/LBP/CETP domain; Bactericidal pe	9e-16

>gnl\|CDD\|237993 cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

 Score =  170 bits (433), Expect = 2e-50
 Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 3/199 (1%)

Query: 287 MLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQSLLNTAGWRFIIPQLYRKYPNDDM 344
           M+ +++ E V NSA+ +Y+ A  +   +  D  P +S L T+ +   IP+L +KYPN   
Sbjct: 1   MVYLAVSEHVFNSAALVYFQAGALNLLLTDDMPPSKSRLTTSIFGIFIPELAKKYPNMPQ 60

Query: 345 NLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEV-IPVACISLVIHGSCSVKILRNN 403
            L IS+SSPP + ++E         D+ I          P+  + +    S  + + +  
Sbjct: 61  QLKISVSSPPHLVLSEGGATLAQQLDVEIFATLPDSQLRPLFRLGVDTSSSAQLSVSKKK 120

Query: 404 LGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFT 463
           L GS+ L+ F + L  S IG     L+Q ++  +++   +P VN  L +GFPLP+   FT
Sbjct: 121 LIGSLNLDRFLLELKSSNIGSFIPELLQAILTTILEITVLPNVNDKLRRGFPLPLPKNFT 180

Query: 464 VKSAEIICSSSKITVCSDV 482
           +  AEI      + + +DV
Sbjct: 181 LYDAEIQVHKDFLLLGADV 199

; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide. Length = 200

>gnl\|CDD\|237992 cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>gnl\|CDD\|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>gnl\|CDD\|128624 smart00329, BPI2, BPI/LBP/CETP C-terminal domain	Back alignment and domain information

>gnl\|CDD\|202449 pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|216404 pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family, N-terminal domain	Back alignment and domain information

>gnl\|CDD\|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		502
KOG4160		492	consensus BPI/LBP/CETP family protein [Defense mec	100.0
PF02886		238	LBP_BPI_CETP_C: LBP / BPI / CETP family, C-termina	100.0
cd00025		223	BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal	100.0
smart00328		225	BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal	100.0
smart00329		202	BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal	100.0
cd00026		200	BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal	100.0
PF01273		164	LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal	99.95
cd00264		208	BPI BPI/LBP/CETP domain; Bactericidal permeability	99.89
cd00264		208	BPI BPI/LBP/CETP domain; Bactericidal permeability	99.85
PF06585		248	JHBP: Haemolymph juvenile hormone binding protein	98.4
smart00700		225	JHBP Juvenile hormone binding protein domains in i	98.11
PF14613		164	DUF4449: Protein of unknown function (DUF4449)	90.97

>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]	Back alignment and domain information

Probab=100.00  E-value=9.7e-64  Score=527.50  Aligned_cols=452  Identities=29%  Similarity=0.451  Sum_probs=411.6

Q ss_pred             ccCCCceEEEEechhHHHHHHHHHHHHHHhhcCCccCCCccceeEeeeeeeEEEEEEeEEEEEEEeCCceeEe-CCceEE
Q 010724           28 ASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVV  106 (502)
Q Consensus        28 ~~~~~PGi~~rit~~gl~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~~~~~is~i~I~~~~~p~~sv~l-p~~gi~  106 (502)
                      +.+.+||+++|++++|++|+++.+...+++++.++++||+.++++.+++|++.|.++++++.++..+.+.+++ ++.++.
T Consensus        23 ~~~~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i~i~~~~~~s~~~~~~~~~~~~  102 (492)
T KOG4160|consen   23 AEAHNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSIKILRFSVPSSQLSLVPQAGLS  102 (492)
T ss_pred             hcccCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecceeEEeccccccceeecCCceEE
Confidence            3444577999999999999999999999999999999999999999988999999999999999999999999 878999


Q ss_pred             EEEecceEEEEEEEEEEEeecccceEeeeeEEEEEEEeeEEEEEEEEEe-e-CCCceEEEEEeeeeEeccEEEEEeCcch
Q 010724          107 FVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-T-QKGTLKLSLVDCGCYVKDISIKLDGGAS  184 (502)
Q Consensus       107 l~i~~~~i~l~g~~~~~~~~~~~pi~i~~~G~~~~~v~~~~i~~~~~l~-~-~~G~p~v~~~~C~~~i~~v~i~~~g~~s  184 (502)
                      |+++++++.+.++|.+ .. |+    ...+|++++.++|+++.+.+.+. + .+|+|.++...|++.++++++.+++-.+
T Consensus       103 ~~~~n~~~~~~~~~~~-~~-~~----~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~  176 (492)
T KOG4160|consen  103 WSITNANISLSGRWKA-RT-RF----LALGGQVDASVKGMDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLAS  176 (492)
T ss_pred             EEEeeEEEEEeeeeEe-EE-EE----EecCCeeEEEeecceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcH
Confidence            9999999999999999 43 34    23459999999999999999996 5 7899999999999999999998885589


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcccccccceeeeeeeecCCeeecceeEEeEeEEEEe-c
Q 010724          185 WLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTA-R  262 (502)
Q Consensus       185 ~l~n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~G~~~~-~  262 (502)
                      |+++.|.+.+.+.||..++.++|+.+.+.+ .++|.+++++|+..++|+.+.+||+++++|.+|+++++++++|++++ .
T Consensus       177 ~l~~~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~  256 (492)
T KOG4160|consen  177 WLIQLFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSL  256 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEeccCCceecceEEEeeeeeEEecc
Confidence            999999999999999999999999999999 58999999999999999999999999999999999999999999999 5


Q ss_pred             cCCCCCCCCCCCCCCCc-CCCCCCCeeEEEechhHHHHHHHHHHhcCceEEEe--ccCCCCc--cccch--hHhhhcHHH
Q 010724          263 KKASIPNYYNSNLQPPV-FCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLNTA--GWRFIIPQL  335 (502)
Q Consensus       263 ~~~~~~p~~~~~~p~~~-~~~~~~~Mv~i~lSey~~NS~l~~~~~~g~L~~~i--~~iP~~~--~LnTs--~~~~liP~l  335 (502)
                      ++...+ +   ..|... .++.+++|+++++|||++||++++||++|.|++++  ++.|.++  .++|+  |+|+++|+|
T Consensus       257 ~~~~~~-~---~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l  332 (492)
T KOG4160|consen  257 GQVTPP-F---PLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPEL  332 (492)
T ss_pred             CCCCCc-c---cCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHH
Confidence            544433 2   122222 23446899999999999999999999999999999  3445445  56777  678899999


Q ss_pred             HhhCCCCceEEEEeeCCCCEEEEEeCcEEEEEEEEEEEEE-eCCCeeeeEEEEEEEEEEEEEEEEeCcEEEEEEEeceEE
Q 010724          336 YRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDV-LESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFT  414 (502)
Q Consensus       336 ~~~yPn~~~~l~i~~~~~P~v~i~~~~~~~~~~~~~~~~v-~~~~~~~~v~~l~~~~~~~~~~~i~~~~l~~~lsl~~~~  414 (502)
                      +++|||+++++++++.+||.+.|++++..+...+.+..++ .++++..++++++++++...+++++++++.|++++++++
T Consensus       333 ~~~~Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~g~l~l~~~~  412 (492)
T KOG4160|consen  333 AEQYPNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVDANVSATLSLSGNKLIGNLSLNKFK  412 (492)
T ss_pred             HHHCCCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEEEEEEEEEEEeeeeEEEEEEEeeeE
Confidence            9999999999999999999999999999999999998875 566688899999999999999999999999999999999


Q ss_pred             EEEeeeccCccchhchHHHHHHHHHHhhHHHHhhhccCcccCCCCCCeeEeeeEEEEECCEEEEEEeeeecCccC
Q 010724          415 MSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHN  489 (502)
Q Consensus       415 l~l~~S~iG~~~~~~L~~~l~~~~~~~~~p~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~~~~~~~  489 (502)
                      ++.++|++|.++.+.++.+++.+.+.++.|.+|++|++|||+|.+.++.+.|+++.+++|++.+++||.|.+...
T Consensus       413 ~~~~~s~~~~i~~~~l~~~~~~~~~~~l~p~~n~~L~~G~~lp~~~~~~~~~~~i~~~~~~L~l~~D~~~~~~~~  487 (492)
T KOG4160|consen  413 IEVKFSNIGGISLDSLQALLSTLSKSVLQPLVNSKLRKGFPLPIPDGFKLINPEISIVDGFLLLSADFLYKRTLL  487 (492)
T ss_pred             EEEeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHhcCccccccccceeecceEEEecCeEEEeccccchhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998744

>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins	Back alignment and domain information

>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>smart00328 BPI1 BPI/LBP/CETP N-terminal domain	Back alignment and domain information

>smart00329 BPI2 BPI/LBP/CETP C-terminal domain	Back alignment and domain information

>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins	Back alignment and domain information

>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP)	Back alignment and domain information

>smart00700 JHBP Juvenile hormone binding protein domains in insects	Back alignment and domain information

>PF14613 DUF4449: Protein of unknown function (DUF4449)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		502
1bp1_A		456	Crystal Structure Of Bpi, The Human Bactericidal Pe		2e-24
1ewf_A		456	The 1.7 Angstrom Crystal Structure Of Bpi Length =		8e-24

>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal Permeability-Increasing Protein Length = 456

Back alignment and structure

Iteration: 1

Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/437 (23%), Positives = 189/437 (43%), Gaps = 31/437 (7%) Query: 37 IIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSS 96 + ISQ GLD+ + + +P + KI LG ++ I + SS Sbjct: 7 VRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSS 66 Query: 97 YVKP-GDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVG--LTLG 153 + + G+ F +S W + + G + +EGM + L LG Sbjct: 67 QISMVPNVGLKFSISNANIKISGKWKAQKRFLKM------SGNFDLSIEGMSISADLKLG 120 Query: 154 LETQKGTLKLSLVDCGCYVKDISIKLDGGA-SWLYQGMINAFEEQIVSAVENAITKKLKE 212 G ++ C ++ + + + WL I F ++I SA+ N + ++ E Sbjct: 121 SNPTSGKPTITCSSCSSHINSVHVHISKSKVGWL----IQLFHKKIESALRNKMNSQVCE 176 Query: 213 GI-----SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASI 267 + SKL Q+LP +D A +N V P T+ +++ + G F + + Sbjct: 177 KVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNP 236 Query: 268 PNYYNSNLQPPV--FCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS-- 321 P + PPV F + +M+ + L + N+A +Y +A ++ T+ D +P +S Sbjct: 237 PPF-----APPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKF 291 Query: 322 LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADL-IIDVLESGE 380 L T + +P++ +K+PN + +++S S+PP + V + D+ VL + Sbjct: 292 RLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSA 351 Query: 381 VIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQT 440 + + I + GS V N L G +KL+ + L S IG + L+Q ++ ++ Sbjct: 352 LASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPI 411 Query: 441 VFVPYVNSHLGQGFPLP 457 + +P VN L +GFPLP Sbjct: 412 LVLPRVNEKLQKGFPLP 428

PyMOL of 1bp1

>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi Length = 456

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		502
1ewf_A		456	BPI, bactericidal/permeability-increasing protein;	3e-87
2obd_A		476	Cholesteryl ester transfer protein; lipid transfer	2e-86
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A* Length = 456	Back alignment and structure

 Score =  274 bits (702), Expect = 3e-87
 Identities = 98/459 (21%), Positives = 191/459 (41%), Gaps = 19/459 (4%)

Query: 36  SIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLS 95
            + ISQ GLD+            +  + +P    + KI  LG       ++ I    + S
Sbjct: 6   VVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPS 65

Query: 96  SYVKP-GDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVG--LTL 152
           S +    + G+ F        +S  W  +             G   + +EGM +   L L
Sbjct: 66  SQISMVPNVGLKFSISNANIKISGKWKAQKRFL------KMSGNFDLSIEGMSISADLKL 119

Query: 153 GLETQKGTLKLSLVDCGCYVKDISIKLDGG-ASWLYQGMINAFEEQIVSAVENAITKKLK 211
           G     G   ++   C  ++  + + +      WL Q      E  + + + + + +K+ 
Sbjct: 120 GSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVT 179

Query: 212 EGI-SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNY 270
             + S+L    Q+LP    +D  A +N   V  P  T+ +++  + G F +    + P +
Sbjct: 180 NSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPPPF 239

Query: 271 YNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLNTA 326
                    F +   +M+ + L +   N+A  +Y +A  ++ T+  D +P +S   L T 
Sbjct: 240 APP---VMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTK 296

Query: 327 GWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADL-IIDVLESGEVIPVA 385
            +   +P++ +K+PN  + +++S S+PP + V    +      D+    VL +  +  + 
Sbjct: 297 FFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLF 356

Query: 386 CISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPY 445
            I +   GS  V    N L G +KL+   + L  S IG   + L+Q ++  ++  + +P 
Sbjct: 357 LIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPR 416

Query: 446 VNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAY 484
           VN  L +GFPLP      + +  +    + +   +DV Y
Sbjct: 417 VNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVY 455

PyMOL of 1ewf

>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens} Length = 476	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		502
1ewf_A		456	BPI, bactericidal/permeability-increasing protein;	100.0
2obd_A		476	Cholesteryl ester transfer protein; lipid transfer	100.0
3uv1_A		196	DER F 7 allergen; super-roll; 2.00A {Dermatophagoi	99.06
3e8t_A		220	Takeout 1, takeout-like protein 1; transport prote	98.14
3h4z_A		568	Maltose-binding periplasmic protein fused with Al	97.08
2rck_A		225	JuvenIle hormone binding protein; hemolymph, JHBP-	96.32
2rqf_A		227	HJHBP, hemolymph juvenIle hormone binding protein;	93.98

>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A*	Back alignment and structure

Probab=100.00  E-value=4e-84  Score=684.38  Aligned_cols=445  Identities=21%  Similarity=0.384  Sum_probs=423.6

Q ss_pred             CCceEEEEechhHHHHHHHHHHHHHHhhcCCccCCCccceeEeeeeeeEEEEEEeEEEEEEEeCCceeEe-CCceEEEEE
Q 010724           31 QESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVFVA  109 (502)
Q Consensus        31 ~~PGi~~rit~~gl~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~~~~~is~i~I~~~~~p~~sv~l-p~~gi~l~i  109 (502)
                      ++||+++|+|++||+|+++++.+++++++.+++|||+++++++|++|++.|++++++|+++++|.+++++ |++|+++.+
T Consensus         1 ~~pGi~vrit~~gL~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~g~~~~~ls~i~I~~~~~~~~~l~~~p~~gi~l~i   80 (456)
T 1ewf_A            1 VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSI   80 (456)
T ss_dssp             CCCSEEEEEEHHHHHHHHHHHHHHHHHHHTTCCCCCEEEECSCSSSSSCEEEEEEEEEEEEECCCEEEEEETTTEEEEEE
T ss_pred             CCCcEEEEECHHHHHHHHHHHHHHHHHHhhcCCCCCccCceeccccceEEEEEEEEEEEEEecCCceEEECCCCEEEEEE
Confidence            4799999999999999999999999999999999999999999988999999999999999999999999 999999999


Q ss_pred             ecceEEEEEEEEEEEeecccceEeeeeEEEEEEEeeEEEEEEEEEe-eC-CCceEEEEEeeeeEeccEEEEEeCc-chhh
Q 010724          110 YGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQ-KGTLKLSLVDCGCYVKDISIKLDGG-ASWL  186 (502)
Q Consensus       110 ~~~~i~l~g~~~~~~~~~~~pi~i~~~G~~~~~v~~~~i~~~~~l~-~~-~G~p~v~~~~C~~~i~~v~i~~~g~-~s~l  186 (502)
                      ++++++++|+|+|++  |+    ++++|.+++.++|+++++.++++ ++ +|+|+++..+|++++++++++++|+ .+|+
T Consensus        81 ~~~~~~l~~~~~~~~--~~----i~~~G~~~~~v~~v~i~~~~~l~~~~~~G~~~v~~~~C~~~~~~~~i~~~g~~~~~l  154 (456)
T 1ewf_A           81 SNANIKISGKWKAQK--RF----LKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWL  154 (456)
T ss_dssp             EEEEEEEEEEEEEEE--TT----EEEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHH
T ss_pred             eCCcEEEEEEEEEEE--EE----EeeeeEEEEEEeeEEEEEEEEEeecCCCCceEEEEecCceEeceEEEEEeCCchHHH
Confidence            999999999999997  56    68999999999999999999997 77 9999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcccccccceeeeeeeecCCeeecceeEEeEeEEEEeccCC
Q 010724          187 YQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKA  265 (502)
Q Consensus       187 ~n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~G~~~~~~~~  265 (502)
                      +|.|.+.+++.|++.+++++|+.|.+++ +++|+.|+++|+.+++|+.+.+||+++++|.+|+++++++++|+|++.+++
T Consensus       155 ~n~f~~~i~~~i~~~l~~~iC~~i~~~v~~~ln~~L~~lp~~~~id~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~~  234 (456)
T 1ewf_A          155 IQLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHH  234 (456)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSCSEEECSSSCEEECCBSSCCEECSSEEEEEECCEEECSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceeecCceEEEEEEeecCCcccccEEEEEEEEEEEeCCCC
Confidence            9999999999999999999999999977 679999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCcCCCCCCCeeEEEechhHHHHHHHHHHhcCceEEEe--ccCCCCc--cccchhHhhhcHHHHhhCCC
Q 010724          266 SIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLNTAGWRFIIPQLYRKYPN  341 (502)
Q Consensus       266 ~~~p~~~~~~p~~~~~~~~~~Mv~i~lSey~~NS~l~~~~~~g~L~~~i--~~iP~~~--~LnTs~~~~liP~l~~~yPn  341 (502)
                      ..+||.|.  +.+ .+++.++|+++++|||++||++|+||++|.|++++  +++|+.+  +|||+|++.++||++++|||
T Consensus       235 ~~~p~~p~--~~~-~p~~~~~m~~~~ls~~~~nS~l~~~~~~g~l~~~it~~~ip~~~~~~L~T~~~~~~iP~l~~~yP~  311 (456)
T 1ewf_A          235 NPPPFAPP--VME-FPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPN  311 (456)
T ss_dssp             CCCSSCCC--CCC-CCCCCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEEGGGSCTTCSCCSBHHHHHTTSSSHHHHSTT
T ss_pred             CCCCCCCC--CcC-CCCCCCcEEEEEecHHHHHHHHHHHHhCCcceEEechhhCCCcCCCeeeehhhhhhchHHHHhCCC
Confidence            77765321  222 24556899999999999999999999999999999  5899865  89999999999999999999


Q ss_pred             CceEEEEeeCCCCEEEEEeCcEEEEEEEEEEEEEe-CCCeeeeEEEEEEEEEEEEEEEEeCcEEEEEEEeceEEEEEeee
Q 010724          342 DDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVL-ESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWS  420 (502)
Q Consensus       342 ~~~~l~i~~~~~P~v~i~~~~~~~~~~~~~~~~v~-~~~~~~~v~~l~~~~~~~~~~~i~~~~l~~~lsl~~~~l~l~~S  420 (502)
                      +++++++++.+||.++++++++++++.+.+++++. ++++..++|++++++++++++++++++|.|+++++++++++++|
T Consensus       312 ~~l~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~~S  391 (456)
T 1ewf_A          312 MKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHS  391 (456)
T ss_dssp             CBEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSCEEEEEEEEEECCEEEEEEECSSEEEEEEEECCCEEEEEEE
T ss_pred             CeEEEEEEeCCCCEEEEecCCEEEEEEEEEEEEEECCCCceeeEEEEEEEEEEEEEEEEECCEEEEEEEecceEEEEEec
Confidence            99999999999999999999999999999999875 67788999999999999999999999999999999999999999


Q ss_pred             ccCccchhchHHHHHHHHHHhhHHHHhhhccCcccCCCCCCeeEeeeEEEEECCEEEEEEeeee
Q 010724          421 KIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAY  484 (502)
Q Consensus       421 ~iG~~~~~~L~~~l~~~~~~~~~p~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~~  484 (502)
                      ++|.++++.|+.+++.+++.+++|.+|++|++|||||.+.++++.|+++.+++||+.+++|++|
T Consensus       392 ~iG~~~~~~l~~~l~~~l~~~~~P~~N~~L~~G~pLP~~~~~~~~n~~i~~~~~~l~i~~d~~~  455 (456)
T 1ewf_A          392 NIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVY  455 (456)
T ss_dssp             SSCCCCGGGGHHHHHHHHHHHTHHHHHHHHHHCEECCCCTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccCCcCHHHHHHHHHHHHHHhhHHHHHHHHcCCeecCCCCceEEEccEEEEECCEEEEEeccee
Confidence            9999999999999999999999999999999999999999999999999999999999999998

PyMOL of 1ewf

>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens}	Back alignment and structure

>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}	Back alignment and structure

>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*	Back alignment and structure

>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}	Back alignment and structure

>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG; 2.44A {Galleria mellonella}	Back alignment and structure

>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR {Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		502
d1ewfa2		239	d.83.1.1 (A:218-456) Bactericidal permeability-inc	4e-59
d1ewfa1		217	d.83.1.1 (A:1-217) Bactericidal permeability-incre	7e-44

>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 239	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  193 bits (491), Expect = 4e-59
 Identities = 55/240 (22%), Positives = 111/240 (46%), Gaps = 8/240 (3%)

Query: 250 SIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEF 309
           +++  + G F +    + P +         F +   +M+ + L +   N+A  +Y +A  
Sbjct: 2   TLDVQMKGEFYSENHHNPPPF---APPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGV 58

Query: 310 MQWTV--DKVPDQS--LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDA 365
           ++ T+  D +P +S   L T  +   +P++ +K+PN  + +++S S+PP + V    +  
Sbjct: 59  LKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTF 118

Query: 366 TVHADL-IIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGK 424
               D+    VL +  +  +  I +   GS  V    N L G +KL+   + L  S IG 
Sbjct: 119 YPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGP 178

Query: 425 LRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAY 484
             + L+Q ++  ++  + +P VN  L +GFPLP      + +  +    + +   +DV Y
Sbjct: 179 FPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVY 238

PyMOL of d1ewfa2

>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 217	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		502
d1ewfa2		239	Bactericidal permeability-increasing protein, BPI	100.0
d1ewfa1		217	Bactericidal permeability-increasing protein, BPI	100.0

>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-47  Score=365.94  Aligned_cols=234  Identities=23%  Similarity=0.394  Sum_probs=219.1

Q ss_pred             ceeEEeEeEEEEeccCCCCCCCCCCCCCCCcCCCCCCCeeEEEechhHHHHHHHHHHhcCceEEEe--ccCCCCc--ccc
Q 010724          249 SSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLN  324 (502)
Q Consensus       249 ~~i~~~l~G~~~~~~~~~~~p~~~~~~p~~~~~~~~~~Mv~i~lSey~~NS~l~~~~~~g~L~~~i--~~iP~~~--~Ln  324 (502)
                      +++++++||+||+.+++..+||.|  +|.+. ++++++|+++++|||++||++|+||++|.|+++|  +++|+.+  .||
T Consensus         1 ~sl~~~~kG~f~~~~~~~~~pf~~--~~~~~-p~~~~~M~~~~isey~~nS~~~~~~~ag~l~~~it~~~ip~~~~~~l~   77 (239)
T d1ewfa2           1 ETLDVQMKGEFYSENHHNPPPFAP--PVMEF-PAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLT   77 (239)
T ss_dssp             SEEEEEECCEEECSSCCCCCSSCC--CCCCC-CCCCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEEGGGSCTTCSCCSB
T ss_pred             CccccceeEEEEeCCCCCCCCCCC--CCcCC-CCCCCcEEEEEEcHHHHHHHHHHHHHCCCeEEEEChhhccccccCccc
Confidence            589999999999999999887632  22333 4567899999999999999999999999999999  6899875  799


Q ss_pred             chhHhhhcHHHHhhCCCCceEEEEeeCCCCEEEEEeCcEEEEEEEEEEEEE-eCCCeeeeEEEEEEEEEEEEEEEEeCcE
Q 010724          325 TAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDV-LESGEVIPVACISLVIHGSCSVKILRNN  403 (502)
Q Consensus       325 Ts~~~~liP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~~~~~~~~~~~v-~~~~~~~~v~~l~~~~~~~~~~~i~~~~  403 (502)
                      |+|+|.++|+++++|||++|.+++++++||.++++++++++.+.+++++++ .++++..++++++++++++++++++++|
T Consensus        78 T~~~~~liP~l~~~ypn~~l~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~~~k  157 (239)
T d1ewfa2          78 TKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNR  157 (239)
T ss_dssp             HHHHHTTSSSHHHHSTTCBEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSCEEEEEEEEEECCEEEEEEECSSE
T ss_pred             HHHHHHHhHHHHHHCCCCcEEEEEEeCCCCEEEEecCcEEEEEEEEEEEEEeCCCCceeEEEEEEEEEEEEEEEEEeCCE
Confidence            999999999999999999999999999999999999999999999999975 5677889999999999999999999999


Q ss_pred             EEEEEEeceEEEEEeeeccCccchhchHHHHHHHHHHhhHHHHhhhccCcccCCCCCCeeEeeeEEEEECCEEEEEEeee
Q 010724          404 LGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVA  483 (502)
Q Consensus       404 l~~~lsl~~~~l~l~~S~iG~~~~~~L~~~l~~~~~~~~~p~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~  483 (502)
                      |++++++.++++++.+|.+|.+++..|+.+++.+++..++|.+|++|++|+|||.++|+++.|+++.+++||+.+++|++
T Consensus       158 l~~~l~l~~~~l~l~~S~vG~~~~~~l~~~l~~~l~~~~lP~lN~~L~~GipLP~~~~~~~~n~~i~~~~~~l~i~~D~~  237 (239)
T d1ewfa2         158 LVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVV  237 (239)
T ss_dssp             EEEEEEECCCEEEEEEESSCCCCGGGGHHHHHHHHHHHTHHHHHHHHHHCEECCCCTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEecceEEEEeecccCcccHHHHHHHHHHHHHHhhHHHHHHHhcCCeeCCCCCceeEECCEEEEECCEEEEEeccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ec
Q 010724          484 YA  485 (502)
Q Consensus       484 ~~  485 (502)
                      |+
T Consensus       238 ~~  239 (239)
T d1ewfa2         238 YK  239 (239)
T ss_dssp             EC
T ss_pred             eC
Confidence            85

PyMOL of d1ewfa2

>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure