Citrus Sinensis ID: 010731

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
Protein Sequence
MRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Secondary Structure (PSIPRED)
cccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEEccccccccEEEccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHcccccccHHHHHHHcccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEcccEEEccEEEccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccccccccccccccccccccccEEEEccccEEccccccccccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MRRDAWGLNLLshlcgplnpistkcNVFICRSvlapggidipVLKSAAAAVLTRsydtlrgnpviLRLIPAAALVAFAAWGLVPLVRLGRTiflnrtdgswkrsRTHYILTSYLQPLLLWTGVTLICreldplvlpsetsqgVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTeandadstdarnmgfnfaGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMihatqpfviNEWIQTKIQGYEVSGtvehvgwwsptiirgddreavhipnhkfTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFleninpesqslNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHrarmatpirtvqkiysepdlenipfadtifthsraaanrpflliepsykissddkIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Flexible Loop (DISEMBL)
MRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLnrtdgswkrsRTHYILTSYLQPLLLWTGVTLICRELDPLVlpsetsqgvKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLeninpesqslnILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLliepsykissddkIKASTRaarneekirrlnqpqnlilrhihrldwyqllttkrarqy
Low Complexity Region (SEG)
MRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPaaalvafaaWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWltagglgtvlltlagREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Disordered region (IsUnstruct)
****AWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSY***************************QNLILRHIHRLDWYQLLTT******
Disordered Region (DISOPRED)
*******LNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV***********************************************************************IHRLDWYQLLTTK*****
Disordered Region (DISEMBL)
MRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Disordered Region (DISPRO)
**RDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKIS******************RRLNQPQNLILRHIHRLDWYQLLTTKRARQ*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	502	2.2.26 [Sep-21-2011]
Q8L7W1	678	Mechanosensitive ion chan	yes	no	0.904	0.669	0.687	0.0
Q56X46	673	Mechanosensitive ion chan	no	no	0.900	0.671	0.678	0.0
P0AEB5	343	MscS family inner membran	N/A	no	0.452	0.661	0.321	4e-27
P0AEB6	343	MscS family inner membran	N/A	no	0.452	0.661	0.321	4e-27
O66994	368	Uncharacterized MscS fami	yes	no	0.466	0.635	0.268	6e-16
Q9ZKG7	623	Uncharacterized MscS fami	yes	no	0.438	0.353	0.265	4e-15
O25170	623	Uncharacterized MscS fami	yes	no	0.438	0.353	0.265	7e-15
Q58543	361	Large-conductance mechano	yes	no	0.322	0.448	0.284	1e-09
Q8VZL4	497	Mechanosensitive ion chan	no	no	0.416	0.420	0.241	3e-09
O07594	371	Uncharacterized MscS fami	yes	no	0.420	0.568	0.206	5e-09

>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/461 (68%), Positives = 385/461 (83%), Gaps = 7/461 (1%)

Query: 2   RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPG-GIDIPVLKSAAAAVLTRSYDTLR 60
           R+D W L LL  L G + P+S++CN F+CRS L+PG G + P+LKS A  + TR YD L 
Sbjct: 48  RQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPGNGNEGPILKSTAV-IFTRVYDALG 106

Query: 61  GNPVILRLIPAAALVAFAAWGLVPLVRLGRT-IFLNRTDGSWKRSRTHYILTSYLQPLLL 119
           GNP +++LIPA  ++AFA WGL PL+RL RT +F    D + ++S T YI+ SYLQPLLL
Sbjct: 107 GNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQKSSTQYIVVSYLQPLLL 166

Query: 120 WTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAN 179
           W+G  L+CR LDP+VLPS   Q +KQR+L F RS+STVLAF+ CLSSL+QQ+QKF  E N
Sbjct: 167 WSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQKFFMETN 226

Query: 180 DADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREI 239
           +    D RNMGF+FAGKAVYTA WVAA SLFMELLGFSTQ+WLTAGGLGTVLLTLAGREI
Sbjct: 227 NP--ADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREI 284

Query: 240 FTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHK 299
            TNFLSS+MIHAT+PFV+NEWIQTKI GYEVSGTVE VGWWSPTIIRGDDREAVHIPNH+
Sbjct: 285 LTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQ 344

Query: 300 FTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLE 359
           F+VN+VRNL+QKTHWRIKT+LAISHLDV K+N+IVADMRKVL+KNPQ+EQQ++HRRVFLE
Sbjct: 345 FSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLE 404

Query: 360 NINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSE 419
           +I+PE+Q+L IL+SCFVKTSRFEEYLCVKEA+LLDLL VI HH AR+ATPIRTVQ++ +E
Sbjct: 405 DIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNE 464

Query: 420 PDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKA 460
            +++   F+D +F  ++AA NR ++LIEPSYKI+SDD  K+
Sbjct: 465 AEVDTAGFSDIVF--NQAAMNRRYMLIEPSYKINSDDNSKS 503

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.
Arabidopsis thaliana (taxid: 3702)

>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/457 (67%), Positives = 376/457 (82%), Gaps = 5/457 (1%)

Query: 10  LLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLI 69
           L ++L  P+  +  +   F C S  A G    P +K A   VLT+S+  ++  P + +L+
Sbjct: 56  LSNYLRRPICSVPCRTTAFRCHSFSASGKAIEPAVK-AVTVVLTKSHGLMQQFPFVYKLV 114

Query: 70  PAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRE 129
           PA AL+ F+ WGLVP  R GR I LN+ D  WK+S T++++TSY+QPLLLW G   ICR 
Sbjct: 115 PAVALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRA 174

Query: 130 LDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNM 189
           LDP+VLP+E S+ VK R+LNFVRSLSTVLAFAYCLSSLIQQ QK  +E   ++ +D RNM
Sbjct: 175 LDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSET--SNPSDTRNM 232

Query: 190 GFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMI 249
           GF FAGKA+Y+AVWVAAVSLFMELLGFSTQ+WLTAGGLGTVL+TLAGREI TNFLSSVMI
Sbjct: 233 GFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMI 292

Query: 250 HATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS 309
           HAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG+DREA+HIPNHKFTVNVVRNL+
Sbjct: 293 HATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLT 352

Query: 310 QKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLN 369
           QKTHWRIKT+LAISHLDV+K+N+IVADMRKVLAKNP VEQQRLHRRVFLEN+ PE+Q+L+
Sbjct: 353 QKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALS 412

Query: 370 ILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFAD 429
           IL+SCFVKTS  EEYL VKEAILLDLL VISHHRAR+ATPIRT++K+Y+E D+EN PF +
Sbjct: 413 ILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGE 472

Query: 430 TIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR 466
           +++      + RP +LIEP+YKI+ +DK K+  RAA+
Sbjct: 473 SMY--GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAK 507

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer (By similarity). Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.

Arabidopsis thaliana (taxid: 3702)

>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain K12) GN=ynaI PE=1 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 19/246 (7%)

Query: 169 QQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLG 228
           QQI+K        D T AR M      + +   + V  V L+ E  G S    LT GG+G
Sbjct: 104 QQIKK------GRDITSARIMS-----RIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIG 152

Query: 229 TVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGD 288
            + + +AG++I +NF S +M++  +PF I +WI++  +  E  GTV  +GW    I   D
Sbjct: 153 GLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIE--GTVAEIGWRITKITTFD 210

Query: 289 DREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVE 348
           +R  +++PN  F+   V N  + T+ RI T + + + D  KV  IV  +R++L  +P ++
Sbjct: 211 NR-PLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAID 269

Query: 349 QQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA 407
           Q    R+  L   N     SLNI+V CF KT+ + E+L  ++ + L ++ ++  H A  A
Sbjct: 270 Q----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFA 325

Query: 408 TPIRTV 413
            P +T+
Sbjct: 326 FPSQTL 331

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7 GN=ynaI PE=3 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 19/246 (7%)

Query: 169 QQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLG 228
           QQI+K        D T AR M      + +   + V  V L+ E  G S    LT GG+G
Sbjct: 104 QQIKK------GRDITSARIMS-----RIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIG 152

Query: 229 TVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGD 288
            + + +AG++I +NF S +M++  +PF I +WI++  +  E  GTV  +GW    I   D
Sbjct: 153 GLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIE--GTVAEIGWRITKITTFD 210

Query: 289 DREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVE 348
           +R  +++PN  F+   V N  + T+ RI T + + + D  KV  IV  +R++L  +P ++
Sbjct: 211 NR-PLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAID 269

Query: 349 QQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA 407
           Q    R+  L   N     SLNI+V CF KT+ + E+L  ++ + L ++ ++  H A  A
Sbjct: 270 Q----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFA 325

Query: 408 TPIRTV 413
            P +T+
Sbjct: 326 FPSQTL 331

Escherichia coli O157:H7 (taxid: 83334)

>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus (strain VF5) GN=aq_812 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 124/246 (50%), Gaps = 12/246 (4%)

Query: 169 QQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLG 228
            +I +F  +    D   A  +G +F  K +   V V   +  ++  G +    L + GL 
Sbjct: 126 NKIVEFFVKVGGKDF--AEEVG-DFILKILKAFVVVIVGASLLQEWGVNIGAILASVGLL 182

Query: 229 TVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGD 288
            + ++LA ++ F N LS ++I   +P  + E ++ K    +  G+VE +G  S T IR  
Sbjct: 183 GLAVSLAAKDTFENILSGLIILLDKPVKVGETVKVK----DFMGSVEDIGLRS-TKIRTF 237

Query: 289 DREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQV 347
           D+  V IPN     N V N +++   R++ Y+ + +     ++ +I+ ++R++L ++P V
Sbjct: 238 DKSLVTIPNRDIVNNHVENFTRRNKRRVRFYIGVVYSTKREQLENILKEIRELLKEHPGV 297

Query: 348 EQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA 407
            +      V+ EN      SLNIL+  +  T+ +EEYL + E I L ++ ++  + +  A
Sbjct: 298 AKDE-KFYVYFENYG--DSSLNILIQYYANTNDYEEYLKIIEDINLKIMEIVEKNGSSFA 354

Query: 408 TPIRTV 413
            P R+V
Sbjct: 355 FPSRSV 360

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99) GN=jhp_0969 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 36/256 (14%)

Query: 192 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHA 251
           N   K VY  +++ A+   ++ LGF+    + + G+G + + LA +++  NF +SV++  
Sbjct: 363 NLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLL 422

Query: 252 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS-Q 310
              F   +WI   + G EV GTV  +G    T IR  D   + +PN +     +RN S +
Sbjct: 423 DNSFSQGDWI---VCG-EVEGTVVEMG-LRRTTIRAFDNALLSVPNSELAGKPIRNWSRR 477

Query: 311 KTHWRIKTYLAISHLDVHKVNSI-VADMRKVLAKNPQV--------EQQRLHRRVFLENI 361
           K   RIK  + +++        + V D++++L  +P++        +    +R +F ++I
Sbjct: 478 KVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNASDYRYMFKKDI 537

Query: 362 ------------------NPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHR 403
                                  S+NILV CF KT  +EE+L VKE ++L ++ ++  H 
Sbjct: 538 VSIDDFLGYKNNLFVFLDQFADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHH 597

Query: 404 ARMATPIRTVQKIYSE 419
              A P    Q +Y E
Sbjct: 598 LSFAFP---SQSLYVE 610

Helicobacter pylori (strain J99) (taxid: 85963)

>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 36/256 (14%)

Query: 192 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHA 251
           N   K VY  +++ A+   ++ LGF+    + + G+G + + LA +++  NF +SV++  
Sbjct: 363 NLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLL 422

Query: 252 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS-Q 310
              F   +WI   + G EV GTV  +G    T IR  D   + +PN +     +RN S +
Sbjct: 423 DNSFSQGDWI---VCG-EVEGTVVEMG-LRRTTIRAFDNALLSVPNSELAGKPIRNWSRR 477

Query: 311 KTHWRIKTYLAISHLDVHKVNSI-VADMRKVLAKNPQV--------EQQRLHRRVFLENI 361
           K   RIK  + +++        + V D++++L  +P++        +    +R +F ++I
Sbjct: 478 KVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNVSDYRYMFKKDI 537

Query: 362 ------------------NPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHR 403
                                  S+NILV CF KT  +EE+L VKE ++L ++ ++  H 
Sbjct: 538 VSIDDFLGYKNNLFVFLDQFADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHH 597

Query: 404 ARMATPIRTVQKIYSE 419
              A P    Q +Y E
Sbjct: 598 LSFAFP---SQSLYVE 610

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

>sp|Q58543|MSMJL_METJA Large-conductance mechanosensitive channel MscMJLR OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1143 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 10/172 (5%)

Query: 214 LGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGT 273
           LG+  +  L   G+G + + LA + + +N ++ ++I   +PF I  WI T   G   SG 
Sbjct: 161 LGYDIKTLLAGLGIGGLAVALASQNLVSNLIAGLIILTDKPFKIGNWI-TFSGG---SGI 216

Query: 274 VEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNS 332
           VE +G  S T IR  D   + +PN K    +++N+  K  W++ T + +++   V K+  
Sbjct: 217 VEDIGIRS-TKIRATDNSIIVVPNSKLIDEIIQNVPSKNKWKVSTTIGVTYNTPVEKIRK 275

Query: 333 IVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEY 384
               ++ +L ++P VE + +   V+ +       SLNI V  ++K SR+  Y
Sbjct: 276 AEEIIKNILLEHPNVEDEPI--TVYFKEFG--DWSLNIQVVYYIKNSRYNGY 323

Large-conductance mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Selective for cations. Rectifies with voltage.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 19/228 (8%)

Query: 192 NFAG---KAVYTAVWVAAVSLFM-------ELLGFSTQRWLTAGGLGTVLLTLAGREIFT 241
           +F G   + V T   V++V LF        E  G + Q  LT GG+G V    A R+I  
Sbjct: 271 SFGGLDREKVLTLDKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILG 330

Query: 242 NFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFT 301
           N LS + +  ++PF + +     I+   V G V  +G  + +++   ++  V +PN  F+
Sbjct: 331 NVLSGLSMQFSRPFSMGD----TIKAGSVEGQVIEMGLTTTSLLNA-EKFPVLVPNSLFS 385

Query: 302 VNVVRNLSQKTHWR-IKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 360
             V+ N S +  WR I + + +   D+  +  I  +++++L  N +V   +     +L  
Sbjct: 386 SQVIVNKS-RAQWRAIASKIPLQIDDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSR 444

Query: 361 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMAT 408
           +  E     + + C +     EE    ++ +LL+ + +I  H   + T
Sbjct: 445 V--EKSFAELTIGCNLIRMGKEELYNTQQEVLLEAVKIIKKHGVSLGT 490

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis (strain 168) GN=yhdY PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 193 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT 252
           F  K +   +   +VS+  +   +    ++   GLG +   LA ++  +NF   ++I   
Sbjct: 136 FLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITE 195

Query: 253 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKT 312
           +PF I +W++T      V+G+VE + + S T  R      V +PN   ++  + N ++ T
Sbjct: 196 KPFTIGDWVETS----TVTGSVEDITFRS-TRFRTAQGALVTVPNSTLSMEAITNWTRMT 250

Query: 313 HWRIKTYLAISHLD-VHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQS-LNI 370
             +I   + +S+   +  +   +  +R +L     +E + +   + + N +  + S  N+
Sbjct: 251 KRQITFSIHVSYATPIENLERSIHSLRTML-----LEHEGVDNEIIMVNFDTFADSYYNL 305

Query: 371 LVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 413
             + + KT+ + E L ++E I   ++ ++     + A P + V
Sbjct: 306 FFNFYTKTTVWAENLNIREDINYKIIEILGAEGVQFAYPGQMV 348

May play a role in resistance to osmotic downshock.

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
224067078	628	predicted protein [Populus trichocarpa]	0.928	0.742	0.791	0.0
255545964	705	conserved hypothetical protein [Ricinus	0.930	0.662	0.775	0.0
116268423	705	expressed protein [Prunus persica]	0.920	0.655	0.781	0.0
356515716	682	PREDICTED: uncharacterized protein LOC10	0.942	0.693	0.751	0.0
225459093	709	PREDICTED: uncharacterized protein LOC10	0.928	0.657	0.773	0.0
449469783	704	PREDICTED: mechanosensitive ion channel	0.940	0.670	0.748	0.0
356508025	681	PREDICTED: uncharacterized protein LOC10	0.942	0.694	0.744	0.0
449508955	550	PREDICTED: mechanosensitive ion channel	0.938	0.856	0.75	0.0
302142063	514	unnamed protein product [Vitis vinifera]	0.912	0.891	0.778	0.0
357465255	716	MscS family inner membrane protein ynaI	0.902	0.632	0.750	0.0

>gi|224067078|ref|XP_002302344.1| predicted protein [Populus trichocarpa] gi|222844070|gb|EEE81617.1| predicted protein [Populus trichocarpa]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/471 (79%), Positives = 426/471 (90%), Gaps = 5/471 (1%)

Query: 2   RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGI-DIPVLKSAAAAVLTRSYDTLR 60
           R D WGL+ L+   GP +P+ ++CNVF+CRSVL PGG  +IPVLKSAA A  TRSYD LR
Sbjct: 1   RLDPWGLHFLNSTRGPPSPVPSRCNVFLCRSVLTPGGGNEIPVLKSAALA-FTRSYDALR 59

Query: 61  GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 120
           G+ ++L+LIPA  ++ FAAWGL PL+ LGRTIFL+++D SWK+S THY++TSYLQPLLLW
Sbjct: 60  GSNLVLKLIPAIGIITFAAWGLGPLIWLGRTIFLHKSDNSWKKSSTHYVVTSYLQPLLLW 119

Query: 121 TGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAND 180
           TG TLICR LDP+VL SE SQ VKQR+LNFVRSLSTV+AFAYCLSSLIQQ QKF+TE N+
Sbjct: 120 TGATLICRALDPVVLQSEVSQAVKQRLLNFVRSLSTVVAFAYCLSSLIQQAQKFITETNE 179

Query: 181 ADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIF 240
             S+DARNMGF+FAGKAVYTAVW+AAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIF
Sbjct: 180 --SSDARNMGFSFAGKAVYTAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 237

Query: 241 TNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 300
           TNFLSS+MIHAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF
Sbjct: 238 TNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 297

Query: 301 TVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 360
           +V++VRNLSQKTHWRIKT+LAISHLDV K+N+IVADMRKVLAKNPQ+EQQRLHRRVFL+N
Sbjct: 298 SVSIVRNLSQKTHWRIKTHLAISHLDVKKINNIVADMRKVLAKNPQIEQQRLHRRVFLDN 357

Query: 361 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEP 420
           INPE+Q+L ILVSCFVKTS FEEYLCVKEA+LLDLL VISHHRAR+ATPIRTVQKIYSE 
Sbjct: 358 INPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVISHHRARLATPIRTVQKIYSEA 417

Query: 421 DLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEK 470
           DLEN+PF+D+IFT S A AN P LLIEPSYKI+S+DK+KAS R+ R NEEK
Sbjct: 418 DLENVPFSDSIFTRSGATANHPLLLIEPSYKINSEDKVKASNRSLRANEEK 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545964|ref|XP_002514042.1| conserved hypothetical protein [Ricinus communis] gi|223547128|gb|EEF48625.1| conserved hypothetical protein [Ricinus communis]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/472 (77%), Positives = 426/472 (90%), Gaps = 5/472 (1%)

Query: 1   MRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVL-APGGIDIPVLKSAAAAVLTRSYDTL 59
           +R+DAW L+ LS +  P+ P  ++CNV +C+S+L + GG +IP++KSAA  VLTRSY+ L
Sbjct: 48  LRQDAWTLHFLSSMHQPIRPAPSRCNVLVCQSLLTSQGGTEIPLVKSAAV-VLTRSYNAL 106

Query: 60  RGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLL 119
            G+P++L+LIPA +++AFA+WGL PL+RLGR IFL+ +D +WK+S THY+LTSYLQPLLL
Sbjct: 107 SGSPLVLKLIPAISIIAFASWGLGPLLRLGRIIFLHGSDNNWKKSSTHYVLTSYLQPLLL 166

Query: 120 WTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAN 179
           WTG  L+CR LDP+VL SE +Q VKQR+LNFVRSLSTV+AFAYCLSSLIQQ QKF TE N
Sbjct: 167 WTGAILVCRALDPVVLQSEANQAVKQRLLNFVRSLSTVMAFAYCLSSLIQQAQKFFTEMN 226

Query: 180 DADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREI 239
           D  S+DARNMGF+FAGKAVY+AVW+AAVSLFMELLGFSTQ+WLTAGGLGTVL+TLAGREI
Sbjct: 227 D--SSDARNMGFSFAGKAVYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREI 284

Query: 240 FTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHK 299
            TNFLSSVMIHAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPT+IRGDDREAVHIPNHK
Sbjct: 285 LTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTVIRGDDREAVHIPNHK 344

Query: 300 FTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLE 359
           FTVNVVRNLSQKTHWRIKT+LAISHLDV+KVN+IVADMRKVLAKNPQVEQQRLHRRVFL+
Sbjct: 345 FTVNVVRNLSQKTHWRIKTHLAISHLDVNKVNNIVADMRKVLAKNPQVEQQRLHRRVFLD 404

Query: 360 NINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSE 419
           NINPE+Q+L ILVSCFVKTS FEEYLCVKEA+LLDLL V+SHHRAR+ATPIRTVQKIY+E
Sbjct: 405 NINPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVLSHHRARLATPIRTVQKIYNE 464

Query: 420 PDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRA-ARNEEK 470
            DL+N+PFADTIF  SRAA NRP LLIEPSYKI+ DDK KAST++ + NEEK
Sbjct: 465 ADLDNVPFADTIFARSRAATNRPLLLIEPSYKINGDDKTKASTQSVSTNEEK 516

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116268423|gb|ABJ96380.1| expressed protein [Prunus persica]

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/480 (78%), Positives = 423/480 (88%), Gaps = 18/480 (3%)

Query: 2   RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGID-IPVLKSAAAAVLTRSYDTLR 60
           R+ A  LNLLS + GP+ P+S++CNVF+CRSVL PGG + +P+LKSAA  VLTRSYD LR
Sbjct: 27  RQGACSLNLLSSVRGPIGPVSSRCNVFLCRSVLVPGGGNGVPLLKSAAV-VLTRSYDALR 85

Query: 61  GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 120
           G+PV+L+LIPA A++AFA WGL PL+RLGR IFL R D +W +SR+HY++ SYL+PLLLW
Sbjct: 86  GSPVLLKLIPAVAIIAFAVWGLGPLLRLGRIIFLQRNDSTWNKSRSHYVMNSYLRPLLLW 145

Query: 121 TGVTLIC-------------RELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSL 167
           TG TL+C             R LDP+VLPSE SQ VKQR++NFV+SLSTVLAFAYCLSSL
Sbjct: 146 TGATLMCSHFICANCCKVYFRALDPVVLPSEASQAVKQRLINFVQSLSTVLAFAYCLSSL 205

Query: 168 IQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGL 227
            QQ QKF TE   +D +D+RNMGFNFAGKAVY+AVWVAAVSLFMELLGFSTQ+WLTAGGL
Sbjct: 206 NQQAQKFFTET--SDPSDSRNMGFNFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGL 263

Query: 228 GTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRG 287
           GTVLLTLAGREIFTNFLSSVMIHAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG
Sbjct: 264 GTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRG 323

Query: 288 DDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQV 347
           DDREAVHIPNHKFTVNVVRNLSQKTHWRIKT+LAISHLDV K+N+IVADMRKVLAKN QV
Sbjct: 324 DDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVIKINTIVADMRKVLAKNSQV 383

Query: 348 EQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVK-EAILLDLLHVISHHRARM 406
           EQQRLHRRVFL+NINP++Q+L ILVSCFVKTS FEEYLCVK EAILLDLL V+SHHRAR+
Sbjct: 384 EQQRLHRRVFLDNINPDNQALMILVSCFVKTSHFEEYLCVKEEAILLDLLRVVSHHRARL 443

Query: 407 ATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR 466
           ATPIRTVQK YSE DLEN+PFADTIFTHSRA+ NRP+LLIEPSYKISSDDK KAS+R  R
Sbjct: 444 ATPIRTVQKYYSEADLENVPFADTIFTHSRASNNRPYLLIEPSYKISSDDKSKASSRPTR 503

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515716|ref|XP_003526544.1| PREDICTED: uncharacterized protein LOC100777815 [Glycine max]

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/478 (75%), Positives = 418/478 (87%), Gaps = 5/478 (1%)

Query: 1   MRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLR 60
           +++D+   +LLS L  P+  + ++CNVFICRSVL PGG     L  +A+ +LTRSYD L+
Sbjct: 46  LKQDSSAFHLLSRLHAPIRHVPSRCNVFICRSVLIPGGGSGTPLMKSASVILTRSYDALQ 105

Query: 61  GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLN-RTDGSWKRSRTHYILTSYLQPLLL 119
           GNP+ L+LIPA  ++AFA  GL PL+RL R +FL   TD SWK+S +  I+TSY+QPLLL
Sbjct: 106 GNPIFLQLIPAIGIIAFAVCGLEPLLRLSRVLFLQVSTDISWKKSSSQSIMTSYIQPLLL 165

Query: 120 WTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAN 179
           WTG  L+CR LDPLVLPSE+SQ VKQR+LNFVRSLSTV++FAYCLSSLIQQ QKF  E N
Sbjct: 166 WTGAMLVCRALDPLVLPSESSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEGN 225

Query: 180 DADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREI 239
           D  S+ ARNMG +FAGKAVYTAVWVAAVSLFMELLGFSTQ+W+TAGGLGTVLLTLAGREI
Sbjct: 226 D--SSGARNMGLDFAGKAVYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREI 283

Query: 240 FTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHK 299
           FTNFLSS+MIHAT+PF++NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHK
Sbjct: 284 FTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHK 343

Query: 300 FTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLE 359
           FTVNVVRNLSQK+HWRIK+Y+AISHLDV+KVN+IVADMRKVL+KNPQVEQQ+LHRRVFLE
Sbjct: 344 FTVNVVRNLSQKSHWRIKSYIAISHLDVNKVNNIVADMRKVLSKNPQVEQQKLHRRVFLE 403

Query: 360 NINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSE 419
           N+NPE+Q+L IL+SCFVKTS FEEYLCVKEAILLDLL V+SHHRAR+ATPIRTVQKIYSE
Sbjct: 404 NVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSE 463

Query: 420 PDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQ 476
            D ENIPF DTIFT SR AANRPFLLIEP YK++ +DK+KASTR+ R NEEK  ++++
Sbjct: 464 ADSENIPFGDTIFTRSR-AANRPFLLIEPPYKVNGEDKVKASTRSTRANEEKDSKIDE 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459093|ref|XP_002283836.1| PREDICTED: uncharacterized protein LOC100259028 [Vitis vinifera]

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/473 (77%), Positives = 416/473 (87%), Gaps = 7/473 (1%)

Query: 2   RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGI-DIPVLKSAAAAVLTRSYDTLR 60
           R+DA  L+LL+ + G + P+S++C  F+CRS LAPGG  +I VLKSAA  VLTRS + LR
Sbjct: 47  RQDALSLHLLNSMRGSITPVSSRCEFFLCRSFLAPGGGNEISVLKSAAL-VLTRSCNALR 105

Query: 61  GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 120
           G P++L+L+PA ++VAFAAWGL PL+RL R +FLN+TD SWK+S T+Y+LT YLQPLLLW
Sbjct: 106 GRPLVLQLVPAVSIVAFAAWGLGPLMRLSRNLFLNKTDSSWKKSSTYYVLTYYLQPLLLW 165

Query: 121 TGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAND 180
            G  LICR LDP++LPS+ SQ VKQR+L F+RSLSTVLA AYCLSSLIQQ+Q F  E ND
Sbjct: 166 IGAMLICRALDPIILPSKESQAVKQRLLIFIRSLSTVLASAYCLSSLIQQVQNFFMENND 225

Query: 181 ADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIF 240
             S+DAR MGF FAGKAVYTA+WVAAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIF
Sbjct: 226 --SSDARTMGFQFAGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 283

Query: 241 TNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 300
           TNFLSSVMIHAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF
Sbjct: 284 TNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 343

Query: 301 TVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 360
           TVNVVRNLSQKTHWRIKT+LAISHLDV+K+N+IVADMRKVLAKNPQVEQQRLHRRVFL+ 
Sbjct: 344 TVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDY 403

Query: 361 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEP 420
           I+PE+Q+L ILVSCFVKT RFEEYLCVKEAILLDLL VISHH+AR+ATPIRTVQK YS  
Sbjct: 404 IDPENQALLILVSCFVKTPRFEEYLCVKEAILLDLLRVISHHQARLATPIRTVQKEYSMA 463

Query: 421 D--LENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAA-RNEEK 470
           D  +ENIPFAD IFT S AAANRP LLIEPSYK++ DDK KAST +A +NEEK
Sbjct: 464 DMEMENIPFADPIFTRSSAAANRPLLLIEPSYKMNGDDKTKASTGSACQNEEK 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469783|ref|XP_004152598.1| PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like [Cucumis sativus]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/477 (74%), Positives = 415/477 (87%), Gaps = 5/477 (1%)

Query: 1   MRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVL-APGGIDIPVLKSAAAAVLTRSYDTL 59
           +R +   L LL  +  P+ P+S++ NVF+CRSVL + GG    VLKSAA  VLTRS D L
Sbjct: 46  LRHNPGSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAV-VLTRSCDAL 104

Query: 60  RGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLL 119
           R NP++L+LIPAA ++AFAAWG+ PL+RLGR +FL+  DGSWK+S T+Y+ TSY+QPLLL
Sbjct: 105 RSNPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLL 164

Query: 120 WTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAN 179
           WTG TLICR LDP+VLPS  SQ VKQR+LNFVRSLSTVLAFAYCLSSLIQQ+QKF  E+N
Sbjct: 165 WTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESN 224

Query: 180 DADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREI 239
           D    DARNMGF+FAGKAVYTAVW+AA+SLFMELLGFSTQ+WLTAGGLGTVLLTLAGREI
Sbjct: 225 DPG--DARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREI 282

Query: 240 FTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHK 299
           FTNFLSSVMIHAT+PFV+NEWIQTKI GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHK
Sbjct: 283 FTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHK 342

Query: 300 FTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLE 359
           FTV++VRNL+QKTHWRIKT+LAISHLDV+K+N IVADMRKVL+KNPQVEQQRLHRR+FL+
Sbjct: 343 FTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLD 402

Query: 360 NINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSE 419
           N+NPE+Q+L I+VSCFVKTSRFEEYLCVKEAILLDLL VISHHRAR+ATPIRTVQKIY E
Sbjct: 403 NVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGE 462

Query: 420 PDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQ 476
            DLEN+PF++T+++ S  A NRP LLIEPSYK++ DDK K S+R  R+  + +   Q
Sbjct: 463 ADLENVPFSETMYSRS-GATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQ 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508025|ref|XP_003522763.1| PREDICTED: uncharacterized protein LOC100796022 [Glycine max]

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/477 (74%), Positives = 414/477 (86%), Gaps = 4/477 (0%)

Query: 1   MRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLR 60
           +++D+  L+LLS    P+  + ++CNVFIC+SVL PGG     L  +A+ +LTRSYD L+
Sbjct: 46  LKQDSSALHLLSRPHAPIRHVPSRCNVFICQSVLIPGGGSGTPLMKSASVILTRSYDALQ 105

Query: 61  GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 120
           GNP  L+LIPA  ++AFA  GL PL+RL R +FL  TD SWK+S + YI+TSY QPLLLW
Sbjct: 106 GNPTFLQLIPAIGIIAFAVCGLEPLLRLSRVLFLQSTDSSWKKSSSRYIMTSYFQPLLLW 165

Query: 121 TGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAND 180
           TG  L+CR LDPLVLPSE+SQ VKQR+LNFVRSLSTV++FAYCLSSLIQQ QKF  E ND
Sbjct: 166 TGAMLVCRALDPLVLPSESSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEGND 225

Query: 181 ADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIF 240
             S+ ARNMG +FAGKAVYTAVWVAAVSLFMELLGFSTQ+W+TAGGLGTVLLTLAGREIF
Sbjct: 226 --SSGARNMGLDFAGKAVYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIF 283

Query: 241 TNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 300
           TNFLSS+MIHAT+PF++NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF
Sbjct: 284 TNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 343

Query: 301 TVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 360
           TVNVVRNLSQK+HWRIK+Y+AISHLDV+K+N+IVADMRKVL+KNPQVEQQ+LHRRVFLEN
Sbjct: 344 TVNVVRNLSQKSHWRIKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLEN 403

Query: 361 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEP 420
           +NPE+Q+L IL+SCFVKTS FEEYLCVKEAILLDLL V+SHHRAR+ATPIRTVQKIYSE 
Sbjct: 404 VNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEA 463

Query: 421 DLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQ 476
           D ENIPF DTIFT S +A NRPFLLIEP YK++ +DK K STR+ R +EEK  R+++
Sbjct: 464 DSENIPFGDTIFTRS-SAGNRPFLLIEPLYKVNGEDKTKPSTRSTRASEEKDFRIDE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508955|ref|XP_004163453.1| PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like [Cucumis sativus]

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/476 (75%), Positives = 414/476 (86%), Gaps = 5/476 (1%)

Query: 2   RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVL-APGGIDIPVLKSAAAAVLTRSYDTLR 60
           R +   L LL  +  P+ P+S++ NVF+CRSVL + GG    VLKSAA  VLTRS D LR
Sbjct: 22  RHNPGSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAV-VLTRSCDALR 80

Query: 61  GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 120
            NP++L+LIPAA ++AFAAWG+ PL+RLGR +FL+  DGSWK+S T+Y+ TSY+QPLLLW
Sbjct: 81  SNPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLW 140

Query: 121 TGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAND 180
           TG TLICR LDP+VLPS  SQ VKQR+LNFVRSLSTVLAFAYCLSSLIQQ+QKF  E+ND
Sbjct: 141 TGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESND 200

Query: 181 ADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIF 240
               DARNMGF+FAGKAVYTAVW+AA+SLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIF
Sbjct: 201 PG--DARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 258

Query: 241 TNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 300
           TNFLSSVMIHAT+PFV+NEWIQTKI GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF
Sbjct: 259 TNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 318

Query: 301 TVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 360
           TV++VRNL+QKTHWRIKT+LAISHLDV+K+N IVADMRKVL+KNPQVEQQRLHRR+FL+N
Sbjct: 319 TVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDN 378

Query: 361 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEP 420
           +NPE+Q+L I+VSCFVKTSRFEEYLCVKEAILLDLL VISHHRAR+ATPIRTVQKIY E 
Sbjct: 379 VNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEA 438

Query: 421 DLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQ 476
           DLEN+PF++T+++ S  A NRP LLIEPSYK++ DDK K S+R  R+  + +   Q
Sbjct: 439 DLENVPFSETMYSRS-GATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQ 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142063|emb|CBI19266.3| unnamed protein product [Vitis vinifera]

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/464 (77%), Positives = 409/464 (88%), Gaps = 6/464 (1%)

Query: 2   RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGI-DIPVLKSAAAAVLTRSYDTLR 60
           R+DA  L+LL+ + G + P+S++C  F+CRS LAPGG  +I VLKSAA  VLTRS + LR
Sbjct: 47  RQDALSLHLLNSMRGSITPVSSRCEFFLCRSFLAPGGGNEISVLKSAAL-VLTRSCNALR 105

Query: 61  GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 120
           G P++L+L+PA ++VAFAAWGL PL+RL R +FLN+TD SWK+S T+Y+LT YLQPLLLW
Sbjct: 106 GRPLVLQLVPAVSIVAFAAWGLGPLMRLSRNLFLNKTDSSWKKSSTYYVLTYYLQPLLLW 165

Query: 121 TGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAND 180
            G  LICR LDP++LPS+ SQ VKQR+L F+RSLSTVLA AYCLSSLIQQ+Q F  E ND
Sbjct: 166 IGAMLICRALDPIILPSKESQAVKQRLLIFIRSLSTVLASAYCLSSLIQQVQNFFMENND 225

Query: 181 ADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIF 240
             S+DAR MGF FAGKAVYTA+WVAAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIF
Sbjct: 226 --SSDARTMGFQFAGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 283

Query: 241 TNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 300
           TNFLSSVMIHAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF
Sbjct: 284 TNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 343

Query: 301 TVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 360
           TVNVVRNLSQKTHWRIKT+LAISHLDV+K+N+IVADMRKVLAKNPQVEQQRLHRRVFL+ 
Sbjct: 344 TVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDY 403

Query: 361 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEP 420
           I+PE+Q+L ILVSCFVKT RFEEYLCVKEAILLDLL VISHH+AR+ATPIRTVQK YS  
Sbjct: 404 IDPENQALLILVSCFVKTPRFEEYLCVKEAILLDLLRVISHHQARLATPIRTVQKEYSMA 463

Query: 421 D--LENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKAST 462
           D  +ENIPFAD IFT S AAANRP LLIEPSYK++ DDK KAST
Sbjct: 464 DMEMENIPFADPIFTRSSAAANRPLLLIEPSYKMNGDDKTKAST 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465255|ref|XP_003602909.1| MscS family inner membrane protein ynaI [Medicago truncatula] gi|355491957|gb|AES73160.1| MscS family inner membrane protein ynaI [Medicago truncatula]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/457 (75%), Positives = 405/457 (88%), Gaps = 4/457 (0%)

Query: 23  TKCNVFICRSVLAPGGIDI-PVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWG 81
           ++C+VF+CRS + PGG      L  +A+ +LTRSYD+L G+P++LRLIPA  ++AFA +G
Sbjct: 76  SRCSVFVCRSAILPGGGGSGTALIKSASVLLTRSYDSLLGSPILLRLIPALGIIAFAVYG 135

Query: 82  LVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQ 141
           + PL+RL R +F  RTD SWK+S + Y++TSY QPLLLWTG  LICR LDP++LPS+TSQ
Sbjct: 136 IEPLLRLSRILFFQRTDSSWKKSSSRYVMTSYFQPLLLWTGAMLICRALDPIILPSQTSQ 195

Query: 142 GVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTA 201
            VKQR+LNFVRSLSTV++FAYCLSSLIQQ QKF  +AN+  S+DARNMG +FAGKA+YTA
Sbjct: 196 VVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLDANE--SSDARNMGLDFAGKAIYTA 253

Query: 202 VWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWI 261
           VWVAAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIFTNFLSS+MIH T+PFV+NEWI
Sbjct: 254 VWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHTTRPFVLNEWI 313

Query: 262 QTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLA 321
           QTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNL+QK+HWRIK+Y++
Sbjct: 314 QTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYIS 373

Query: 322 ISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRF 381
           ISHLDV+K+N+IVADMRKVLAKNPQVEQQ+LHRRVFLE+INPE+ +L IL+SCFVKTS F
Sbjct: 374 ISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLEDINPENTALKILISCFVKTSHF 433

Query: 382 EEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANR 441
           EEYLCVKEAILLDLL V+SHHRAR+ATPIRTVQKIYSEP  ENIPF D+IFT SRAA NR
Sbjct: 434 EEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEPASENIPFGDSIFTRSRAAVNR 493

Query: 442 PFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQP 477
           PFLLIEP YK++ +DK K STR+ R NEEK  ++++P
Sbjct: 494 PFLLIEPPYKVNGEDKAKPSTRSTRGNEEKDAKVDEP 530

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
TAIR|locus:2015297	678	MSL3 "MSCS-like 3" [Arabidopsi	0.904	0.669	0.646	3.1e-161
TAIR|locus:2142414	673	MSL2 "MSCS-like 2" [Arabidopsi	0.926	0.690	0.624	8.9e-157
UNIPROTKB|P0AEB5	343	ynaI "mechanosensitive channel	0.505	0.740	0.279	2.2e-22
UNIPROTKB|Q83CN5	383	CBU_1075 "Mechanosensitive ion	0.420	0.550	0.242	7.2e-16
TIGR_CMR|CBU_1075	383	CBU_1075 "membrane protein, pu	0.420	0.550	0.242	7.2e-16
TIGR_CMR|CJE_0289	627	CJE_0289 "mechanosensitive ion	0.372	0.298	0.223	0.00038
TAIR|locus:2126061	497	AT4G00290 [Arabidopsis thalian	0.400	0.404	0.207	0.00095

TAIR|locus:2015297 MSL3 "MSCS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
 Identities = 298/461 (64%), Positives = 364/461 (78%)

Query:     2 RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPG-GIDIPVLKSAAAAVLTRSYDTLR 60
             R+D W L LL  L G + P+S++CN F+CRS L+PG G + P+LKS A  + TR YD L 
Sbjct:    48 RQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPGNGNEGPILKSTAV-IFTRVYDALG 106

Query:    61 GNPVILRLIPXXXXXXXXXWGLVPLVRLGRT-IFLNRTDGSWKRSRTHYILTSYLQPLLL 119
             GNP +++LIP         WGL PL+RL RT +F    D + ++S T YI+ SYLQPLLL
Sbjct:   107 GNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQKSSTQYIVVSYLQPLLL 166

Query:   120 WTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAN 179
             W+G  L+CR LDP+VLPS   Q +KQR+L F RS+STVLAF+ CLSSL+QQ+QKF  E N
Sbjct:   167 WSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQKFFMETN 226

Query:   180 DADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREI 239
             +    D RNMGF+FAGKAVYTA WVAA SLFMELLGFSTQ+W               REI
Sbjct:   227 NP--ADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREI 284

Query:   240 FTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHK 299
              TNFLSS+MIHAT+PFV+NEWIQTKI GYEVSGTVE VGWWSPTIIRGDDREAVHIPNH+
Sbjct:   285 LTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQ 344

Query:   300 FTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLE 359
             F+VN+VRNL+QKTHWRIKT+LAISHLDV K+N+IVADMRKVL+KNPQ+EQQ++HRRVFLE
Sbjct:   345 FSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLE 404

Query:   360 NINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSE 419
             +I+PE+Q+L IL+SCFVKTSRFEEYLCVKEA+LLDLL VI HH AR+ATPIRTVQ++ +E
Sbjct:   405 DIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNE 464

Query:   420 PDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKA 460
              +++   F+D +F  ++AA NR ++LIEPSYKI+SDD  K+
Sbjct:   465 AEVDTAGFSDIVF--NQAAMNRRYMLIEPSYKINSDDNSKS 503

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0010020 "chloroplast fission" evidence=IGI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2142414 MSL2 "MSCS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
 Identities = 294/471 (62%), Positives = 362/471 (76%)

Query:    10 LLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLI 69
             L ++L  P+  +  +   F C S  A G    P +K A   VLT+S+  ++  P + +L+
Sbjct:    56 LSNYLRRPICSVPCRTTAFRCHSFSASGKAIEPAVK-AVTVVLTKSHGLMQQFPFVYKLV 114

Query:    70 PXXXXXXXXXWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRE 129
             P         WGLVP  R GR I LN+ D  WK+S T++++TSY+QPLLLW G   ICR 
Sbjct:   115 PAVALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRA 174

Query:   130 LDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNM 189
             LDP+VLP+E S+ VK R+LNFVRSLSTVLAFAYCLSSLIQQ QK  +E ++   +D RNM
Sbjct:   175 LDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNP--SDTRNM 232

Query:   190 GFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMI 249
             GF FAGKA+Y+AVWVAAVSLFMELLGFSTQ+W               REI TNFLSSVMI
Sbjct:   233 GFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMI 292

Query:   250 HATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS 309
             HAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG+DREA+HIPNHKFTVNVVRNL+
Sbjct:   293 HATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLT 352

Query:   310 QKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLN 369
             QKTHWRIKT+LAISHLDV+K+N+IVADMRKVLAKNP VEQQRLHRRVFLEN+ PE+Q+L+
Sbjct:   353 QKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALS 412

Query:   370 ILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFAD 429
             IL+SCFVKTS  EEYL VKEAILLDLL VISHHRAR+ATPIRT++K+Y+E D+EN PF +
Sbjct:   413 ILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGE 472

Query:   430 TIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQPQN 479
             +++      + RP +LIEP+YKI+ +DK K+  RAA+   E+  + + P++
Sbjct:   473 SMY--GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENKGSNPKS 521

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IGI

UNIPROTKB|P0AEB5 ynaI "mechanosensitive channel YnaI monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 265 (98.3 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 75/268 (27%), Positives = 128/268 (47%)

Query:   147 VLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAA 206
             V++F+ +    +     L  LI Q +K   +    D T AR M      + +   + V  
Sbjct:    77 VIDFICTSLIAVILTIKLFLLINQFEKQQIKKG-RDITSARIMS-----RIIKITIIVVL 130

Query:   207 VSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQPFVINEWIQTKIQ 266
             V L+ E  G S                   ++I +NF S +M++  +PF I +WI++  +
Sbjct:   131 VLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDR 190

Query:   267 GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLD 326
               E  GTV  +GW    I   D+R  +++PN  F+   V N  + T+ RI T + + + D
Sbjct:   191 NIE--GTVAEIGWRITKITTFDNRP-LYVPNSLFSSISVENPGRMTNRRITTTIGLRYED 247

Query:   327 VHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYL 385
               KV  IV  +R++L  +P ++Q    R+  L   N     SLNI+V CF KT+ + E+L
Sbjct:   248 AAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWL 303

Query:   386 CVKEAILLDLLHVISHHRARMATPIRTV 413
               ++ + L ++ ++  H A  A P +T+
Sbjct:   304 AAQQDVYLKIIDIVQSHGADFAFPSQTL 331

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IGI

GO:0005887 "integral to plasma membrane" evidence=RCA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=IGI;ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q83CN5 CBU_1075 "Mechanosensitive ion channel" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 223 (83.6 bits), Expect = 7.2e-16, P = 7.2e-16
 Identities = 53/219 (24%), Positives = 112/219 (51%)

Query:   197 AVYTAVWVAAVSLFMEL--LGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 254
             A  T V + A  L M L  +G                     ++   NF   +MI+  +P
Sbjct:   136 AQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVIGFAAKDTLGNFFGGMMIYWDRP 195

Query:   255 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 314
             F + +WI++  +  ++ GTVE++GW   T IR  D+ ++++PN   +   V N S+ T+ 
Sbjct:   196 FSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVPNGILSNVAVENPSRMTNR 252

Query:   315 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 374
             R+K  + + + D  K+  +   + ++L  +P+++   + + +F+        SLN++V  
Sbjct:   253 RLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTLFVNLFEFAPSSLNMMVYT 309

Query:   375 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 413
             F KT+ + ++  +++ I+L ++++I+ + A  A P +T+
Sbjct:   310 FTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1075 CBU_1075 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 223 (83.6 bits), Expect = 7.2e-16, P = 7.2e-16
 Identities = 53/219 (24%), Positives = 112/219 (51%)

Query:   197 AVYTAVWVAAVSLFMEL--LGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 254
             A  T V + A  L M L  +G                     ++   NF   +MI+  +P
Sbjct:   136 AQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVIGFAAKDTLGNFFGGMMIYWDRP 195

Query:   255 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 314
             F + +WI++  +  ++ GTVE++GW   T IR  D+ ++++PN   +   V N S+ T+ 
Sbjct:   196 FSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVPNGILSNVAVENPSRMTNR 252

Query:   315 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 374
             R+K  + + + D  K+  +   + ++L  +P+++   + + +F+        SLN++V  
Sbjct:   253 RLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTLFVNLFEFAPSSLNMMVYT 309

Query:   375 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 413
             F KT+ + ++  +++ I+L ++++I+ + A  A P +T+
Sbjct:   310 FTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|CJE_0289 CJE_0289 "mechanosensitive ion channel family protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 115 (45.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 45/201 (22%), Positives = 81/201 (40%)

Query:   192 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHA 251
             N   K +Y  + + A+   +  LGF+                   ++I  NF +S+++  
Sbjct:   368 NLIIKILYFVIIIIALLYILAQLGFNISAIIASLGIGGLAVALAAKDIIANFFASILLLF 427

Query:   252 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK 311
                F   +W++  + G E  GTV   G    T IR  D   V +PN       ++N S++
Sbjct:   428 DNSFNQGDWVE--VSGIE--GTVVETGL-RKTTIRTFDNCLVFLPNSTIMGANIKNWSKR 482

Query:   312 THWR-IKTYLAISH-LDVHKVNSIVADMRKVLAKNPQV---EQQRL----HRRVFLENIN 362
                R ++ YL + +     K+   V D+R+ L  +  V   E   L    H   + +N+ 
Sbjct:   483 RMGRHVRMYLGVGYDATPEKLEQCVKDLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLV 542

Query:   363 PESQSLNILVSCFVKTSRFEE 383
               +       +C+V  S F +
Sbjct:   543 SINDLEGYKNACYVALSEFAD 563

GO:0005216 "ion channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2126061 AT4G00290 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00095, P = 0.00095
 Identities = 44/212 (20%), Positives = 92/212 (43%)

Query:   200 TAVWVAAVSLFM--ELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQPFVI 257
             ++V + A+ L    E  G + Q                 R+I  N LS + +  ++PF +
Sbjct:   287 SSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSM 346

Query:   258 NEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWR-I 316
              + I+    G  V G V  +G  + +++  + +  V +PN  F+  V+ N S +  WR I
Sbjct:   347 GDTIKA---G-SVEGQVIEMGLTTTSLLNAE-KFPVLVPNSLFSSQVIVNKS-RAQWRAI 400

Query:   317 KTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFV 376
              + + +   D+  +  I  +++++L  N +V   +     +L  +  E     + + C +
Sbjct:   401 ASKIPLQIDDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSRV--EKSFAELTIGCNL 458

Query:   377 KTSRFEEYLCVKEAILLDLLHVISHHRARMAT 408
                  EE    ++ +LL+ + +I  H   + T
Sbjct:   459 IRMGKEELYNTQQEVLLEAVKIIKKHGVSLGT 490


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      502       478   0.00079  119 3  11 22  0.47    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  291 KB (2151 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.41u 0.09s 40.50t   Elapsed:  00:00:03
  Total cpu time:  40.41u 0.09s 40.50t   Elapsed:  00:00:03
  Start:  Sat May 11 07:08:13 2013   End:  Sat May 11 07:08:16 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7W1	MSL3_ARATH	No assigned EC number	0.6876	0.9043	0.6696	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.1196.1 hypothetical protein (589 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	502
pfam00924	202	pfam00924, MS_channel, Mechanosensitive ion channe	1e-22
COG0668	316	COG0668, MscS, Small-conductance mechanosensitive	2e-16

>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel

 Score = 95.0 bits (237), Expect = 1e-22
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 10/197 (5%)

Query: 198 VYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVI 257
           +   + V  + + +  LG +    L   G   + L  A +++ +N +S ++I   +PF I
Sbjct: 2   LKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFKI 61

Query: 258 NEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIK 317
            +WI+      +V GTVE +G  S T IR  D   V IPN K   + + NLS+    R++
Sbjct: 62  GDWIEIG----DVEGTVEDIGIRS-TTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVE 116

Query: 318 TYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFV 376
             + +++  D  K+  ++  +++   ++P V  +     V          SLN  V  +V
Sbjct: 117 VSIGVAYSSDPKKLEKVIEILKEAAYEHPLV-LKDPEPPVVFGEFGDS--SLNFEVRVWV 173

Query: 377 KTSRFEEYLCVKEAILL 393
           KT    EY  V+  + L
Sbjct: 174 KT-LPGEYFNVRSELNL 189

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202

>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 56/269 (20%), Positives = 113/269 (42%), Gaps = 14/269 (5%)

Query: 147 VLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGF-NFAGKAVYTAVWVA 205
           +   +  L  +L     ++ L++ + + L          AR      F    +   + V 
Sbjct: 39  LRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRLARETTLSVFLSNLLRILILVV 98

Query: 206 AVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKI 265
           A+ + + +LG      L   G   + + LA +++ +N ++ + +   +PF + +WI+   
Sbjct: 99  ALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI-- 156

Query: 266 QGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAIS-H 324
            G  V GTVE +G  S T IR  D   V IPN K     V N S++   R++  + ++  
Sbjct: 157 -GSGVEGTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYD 214

Query: 325 LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEY 384
            D+ K   I   +++VL + P+V +      + +  +      +NI V  +      E+ 
Sbjct: 215 SDLEKALKI---LKEVLEELPEVLKIEPEPVIGVSELG--DSGINIRVRFWTNP---EDL 266

Query: 385 LCVKEAILLDLLHVISHHRARMATPIRTV 413
             V+  + L +   +      +  P ++V
Sbjct: 267 WSVQRELNLRIKEALEEAGIEIPYPQQSV 295

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	502
PRK10334	286	mechanosensitive channel MscS; Provisional	100.0
PRK11465	741	putative mechanosensitive channel protein; Provisi	100.0
PRK11281	1113	hypothetical protein; Provisional	100.0
PRK10929	1109	putative mechanosensitive channel protein; Provisi	100.0
COG3264	835	Small-conductance mechanosensitive channel [Cell e	100.0
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	100.0
COG0668	316	MscS Small-conductance mechanosensitive channel [C	100.0
KOG4629	714	consensus Predicted mechanosensitive ion channel [	99.82

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=100.00  E-value=7.4e-46  Score=372.64  Aligned_cols=251  Identities=18%  Similarity=0.252  Sum_probs=224.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 010731          148 LNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGL  227 (502)
Q Consensus       148 ~~~~~~l~~il~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi  227 (502)
                      ++++.++ ++++++|++.+++..+.+....+...     +.+..+++.++++++++++++++++..+|++.++++|++|+
T Consensus        29 ~~i~~al-~il~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~  102 (286)
T PRK10334         29 VNIVAAL-AIIIVGLIIARMISNAVNRLMISRKI-----DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA  102 (286)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            3444344 45667888888888776655544332     23456788999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEE
Q 010731          228 GTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRN  307 (502)
Q Consensus       228 ~glalgfAaq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N  307 (502)
                      +|+++|||+|++++|++||++|+++|||++||||++    +|.+|+|++|+||+ |++|++||+.++|||+.+.++.|+|
T Consensus       103 ~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i----~~~~G~V~~I~~r~-T~i~t~d~~~v~IPNs~~~~~~i~N  177 (286)
T PRK10334        103 AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIIN  177 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEcchHhcCCeeEE
Confidence            999999999999999999999999999999999998    57999999999999 9999999999999999999999999


Q ss_pred             ccCCCceEEEEEEeecC-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeecCCCCeeEEEEEEEEecCChhhHHH
Q 010731          308 LSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLC  386 (502)
Q Consensus       308 ~sr~~~~~i~~~i~v~y-td~~~v~~i~~~l~~~l~~~~~i~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~  386 (502)
                      ||+.+.+|+.+.++++| +|+++++++   ++++++++|.+.++|. |.+.+.+++  ++++++++++|+++.+   +++
T Consensus       178 ~s~~~~rr~~~~v~V~y~~d~~~~~~i---l~~~~~~~~~vl~~p~-p~v~~~~~~--dssi~~~v~~wv~~~~---~~~  248 (286)
T PRK10334        178 FSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSGD---LQN  248 (286)
T ss_pred             cCCCCeEEEEEEEEecCCCCHHHHHHH---HHHHHHhCCceecCCC-CEEEEEeee--CceEEEEEEEEEecch---hHH
Confidence            99988899999999999 699999998   7889999999998875 799999999  8899999999999854   678


Q ss_pred             HHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 010731          387 VKEAILLDLLHVISHHRARMATPIRTVQKIYS  418 (502)
Q Consensus       387 vr~~l~~~i~~~~~~~gI~~a~P~~~v~~~~~  418 (502)
                      ++++++++++++|+++||++|||+++++....
T Consensus       249 ~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~~~  280 (286)
T PRK10334        249 VYWDVLERIKREFDAAGISFPYPQMDVNFKRV  280 (286)
T ss_pred             HHHHHHHHHHHHHHHCCCcCCCCCeEEEeccC
Confidence            99999999999999999999999999988654

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=2.2e-43  Score=387.08  Aligned_cols=290  Identities=13%  Similarity=0.144  Sum_probs=227.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc--cCCch
Q 010731          108 YILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQ-IQKFLTEAN--DADST  184 (502)
Q Consensus       108 ~ll~~~~~Pl~l~l~~~~i~~al~~l~l~~~~~~~v~~~l~~~~~~l~~il~~~~~~~~li~~-~~~~~~~~~--~~~~~  184 (502)
                      .+++.++ |+.+++++++++.++..+.++..........+...+..++++++++++.+.+.+. +.+++.+..  +..+.
T Consensus       425 ~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~~~~~~~~~~  503 (741)
T PRK11465        425 AALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPS  503 (741)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhh
Confidence            5667777 9888888887887776554443111111122333333344444444444444442 233332221  11122


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccCCcEEEEe
Q 010731          185 DARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTK  264 (502)
Q Consensus       185 ~~~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~I~~~~Pf~VGD~I~i~  264 (502)
                      ...+++.+++++++++++++++++++|+.+|+++++++|++|++|+++|||+|++++|++||++|+++|||++||||++ 
T Consensus       504 ~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf~vGD~I~v-  582 (741)
T PRK11465        504 ARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTI-  582 (741)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE-
Confidence            3456889999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEccCCCceEEEEEEeecC-CCHHHHHHHHHHHHHHHHc
Q 010731          265 IQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAK  343 (502)
Q Consensus       265 i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~~i~~~i~v~y-td~~~v~~i~~~l~~~l~~  343 (502)
                         +|++|+||+|++|+ |++|++||+.++|||+.+.+  |+||||. .++..++++|+| +|.++++++++++.+.+.+
T Consensus       583 ---~g~~GtVe~I~lRs-T~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~  655 (741)
T PRK11465        583 ---GPLTGTVERMSIRS-VGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELME  655 (741)
T ss_pred             ---CCeEEEEEEEeeeE-EEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Confidence               67999999999999 99999999999999999974  9999985 567888999999 7999999998777777777


Q ss_pred             CCCc----cccccceEEEEEeecCCCCeeEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEE
Q 010731          344 NPQV----EQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV  413 (502)
Q Consensus       344 ~~~i----~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr~~l~~~i~~~~~~~gI~~a~P~~~v  413 (502)
                      +|++    .+++  +.+.+.+++  ++++++++++|+++   .++|.+++++++++++.|+++||++|+|+..+
T Consensus       656 dpe~~~~il~~p--~~vgV~~lg--dSsi~lrvr~~t~p---~~qw~v~rel~~~IK~~Fde~GIeIP~~tv~v  722 (741)
T PRK11465        656 NEEIRGLIIGEP--NFAGIVGLT--NTAFTLRVSFTTLP---LKQWTVRFALDSQVKKHFDLAGVRAPVQTYQV  722 (741)
T ss_pred             CccccccccCCC--CeEEEEEec--CceEEEEEEEEECc---chHHHHHHHHHHHHHHHHHHCCCCCCCCceEe
Confidence            7764    3333  367889998  88999999999976   56799999999999999999999987665543

>PRK11281 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-40  Score=378.68  Aligned_cols=254  Identities=19%  Similarity=0.207  Sum_probs=223.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 010731          146 RVLNFVRSLSTVLAFAYCLSSLIQQIQKFL-TEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTA  224 (502)
Q Consensus       146 ~l~~~~~~l~~il~~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~  224 (502)
                      .+.+++..+ ++++++|++.+.+..+.+.+ .++...++     .....+.++++++++++++++++..+|++.+++.+.
T Consensus       835 tl~~Ll~al-lIl~i~~~l~r~l~~ll~~~~~~rl~l~~-----~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l  908 (1113)
T PRK11281        835 TLGNLLFAL-IILVVTYVLVRNLPGLLEVLVLSRLNLRQ-----GTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWL  908 (1113)
T ss_pred             eHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            344555444 45677888888888765443 33322212     224667899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccce
Q 010731          225 GGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNV  304 (502)
Q Consensus       225 ~Gi~glalgfAaq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~  304 (502)
                      +|++|+++|||+|++++||+||++|+++|||++||+|++    ++.+|+|++|++|+ |+++|+||+.++|||+.|.++.
T Consensus       909 ~gaLgVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I----~~~~G~V~~I~lRs-T~Irt~D~~~ViIPNs~~~t~~  983 (1113)
T PRK11281        909 VAALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTI----GTFSGTVSKIRIRA-TTITDFDRKEVIVPNKAFVTER  983 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEechhhhcCc
Confidence            999999999999999999999999999999999999998    67999999999999 9999999999999999999999


Q ss_pred             EEEccCCCc-eEEEEEEeecC-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeecCCCCeeEEEEEEEEecCChh
Q 010731          305 VRNLSQKTH-WRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFE  382 (502)
Q Consensus       305 I~N~sr~~~-~~i~~~i~v~y-td~~~v~~i~~~l~~~l~~~~~i~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~  382 (502)
                      |+|||.++. +|+.++++|+| +|+++++++   +.++++++|.+.++|. |.|++.+|+  ++++++++++|+++.  .
T Consensus       984 IiN~S~~~~~~Rv~i~vgV~Y~sDi~~v~~i---L~eaa~~~p~Vl~~P~-P~V~~~~fg--dssi~~~lr~wv~~~--~ 1055 (1113)
T PRK11281        984 LINWSLSDTVTRVVIKVGVAYGSDLEKVREL---LLQAATENPRVMKEPE-PQVFFLNFG--ASTLDHELRLYVREL--G 1055 (1113)
T ss_pred             eEeCCCCCcceEEEEEEEeCCCCCHHHHHHH---HHHHHHcCcccccCCC-CEEEEEecc--CceEEEEEEEEEcCH--h
Confidence            999999874 78999999999 799999988   7889999999998885 799999999  899999999999864  5


Q ss_pred             hHHHHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 010731          383 EYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYS  418 (502)
Q Consensus       383 ~~~~vr~~l~~~i~~~~~~~gI~~a~P~~~v~~~~~  418 (502)
                      +++.++++++.+|++.|+++||++|||++++|+...
T Consensus      1056 ~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~ 1091 (1113)
T PRK11281       1056 DRSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQ 1091 (1113)
T ss_pred             hHHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCC
Confidence            789999999999999999999999999999998764

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=3.1e-40  Score=376.41  Aligned_cols=252  Identities=15%  Similarity=0.142  Sum_probs=222.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 010731          148 LNFVRSLSTVLAFAYCLSSLIQQIQK-FLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGG  226 (502)
Q Consensus       148 ~~~~~~l~~il~~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~G  226 (502)
                      .+++.++ ++++++|++.+.+..+.+ .+.++.+.++     ....++.+++++++++++++++++.+|++.+++.+.+|
T Consensus       834 ~~ll~Al-lIliv~~~l~r~l~~lle~~l~~~~~l~~-----~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~g  907 (1109)
T PRK10929        834 GSVLIAI-LVFIITTQLVRNLPALLELALLQHLDLTP-----GTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVA  907 (1109)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            3444444 455667777777776554 3434433222     33577889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEE
Q 010731          227 LGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVR  306 (502)
Q Consensus       227 i~glalgfAaq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~  306 (502)
                      ++|+++|||+|++++||+||++|+++|||++||+|++    +|.+|+|++||+|+ |+++++||+.++|||+.|.++.|+
T Consensus       908 alGVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I----~~~~GtV~~I~lRs-T~Irt~Dg~~IiIPNs~~it~~Ii  982 (1109)
T PRK10929        908 ALGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTI----RDLTGSVTKINTRA-TTISDWDRKEIIVPNKAFITEQFI  982 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE----CCEEEEEEEEeeeE-EEEEeCCCCEEEEEChhhhcCceE
Confidence            9999999999999999999999999999999999998    67999999999999 999999999999999999999999


Q ss_pred             EccCCCc-eEEEEEEeecC-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeecCCCCeeEEEEEEEEecCChhhH
Q 010731          307 NLSQKTH-WRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEY  384 (502)
Q Consensus       307 N~sr~~~-~~i~~~i~v~y-td~~~v~~i~~~l~~~l~~~~~i~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~  384 (502)
                      |||+++. +|+.+.++|+| +|+++++++   +.++++++|.+.++|. |.|++.+++  ++++++++++|++..  .++
T Consensus       983 N~S~~d~~~Rv~i~VgV~Y~sDie~v~~i---L~eaa~~~~~VL~~P~-P~V~~~~fg--dssi~~elr~wv~~~--~~~ 1054 (1109)
T PRK10929        983 NWSLSDSVTRVVLTIPAPADANSEEVTEI---LLTAARRCSLVLDNPA-PEVFLVDLQ--QGIQIFELRIYAAEM--GHR 1054 (1109)
T ss_pred             ecCCCCcceEEEEEEEeCCCCCHHHHHHH---HHHHHHhCccccCCCC-CEEEEEecC--CCceEEEEEEEEcCh--hhH
Confidence            9999875 78999999999 799999998   7889999999988775 799999998  789999999999753  568


Q ss_pred             HHHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 010731          385 LCVKEAILLDLLHVISHHRARMATPIRTVQKIYS  418 (502)
Q Consensus       385 ~~vr~~l~~~i~~~~~~~gI~~a~P~~~v~~~~~  418 (502)
                      +.++++++.+|++.|+++||++|||++++|+...
T Consensus      1055 ~~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~~ 1088 (1109)
T PRK10929       1055 MPLRHEIHQLILAGFREHGIDMPFPPFQMRLESL 1088 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeecC
Confidence            9999999999999999999999999999999864

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.5e-36  Score=328.81  Aligned_cols=250  Identities=19%  Similarity=0.226  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 010731          149 NFVRSLSTVLAFAYCLSSLIQQIQ-KFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGL  227 (502)
Q Consensus       149 ~~~~~l~~il~~~~~~~~li~~~~-~~~~~~~~~~~~~~~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi  227 (502)
                      +++..+ +++++++++.+.+.... ..++.+.+.+...     -..+.+++.+++..+++++.++.+|+|.+++--.+|.
T Consensus       560 ~ll~av-l~~~~~~~l~r~~~~~L~~~vl~r~~~~~G~-----r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gA  633 (835)
T COG3264         560 ALLQAV-LLFLITYVLTRNLPGWLEVRVLQRLDLDAGT-----RYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGA  633 (835)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCcch-----HHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHH
Confidence            334333 34556677777776654 4667776644432     3457899999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEE
Q 010731          228 GTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRN  307 (502)
Q Consensus       228 ~glalgfAaq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N  307 (502)
                      .|+.+||+.|++++||+||++|+++|||||||||++    |+++|+|.+|+.|+ |.|+|+||+-++|||+.|.++.|.|
T Consensus       634 LsvGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~----g~~~G~V~~I~vRA-T~I~~fd~~~vIVPNs~fI~~qV~N  708 (835)
T COG3264         634 LSVGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTI----GTVSGTVRKISVRA-TTIRTFDRKEVIVPNSAFITEQVIN  708 (835)
T ss_pred             hhhhhchhHHHHHHHhhhhhhhheecCcccCCEEEE----CCceEEEEEEEeeE-EEEEeCCCCeEEeccHHHHhhheee
Confidence            999999999999999999999999999999999998    78999999999999 9999999999999999999999999


Q ss_pred             ccCCC-ceEEEEEEeecC-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeecCCCCeeEEEEEEEEecCChhhHH
Q 010731          308 LSQKT-HWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYL  385 (502)
Q Consensus       308 ~sr~~-~~~i~~~i~v~y-td~~~v~~i~~~l~~~l~~~~~i~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~  385 (502)
                      ||.++ ..|+.+.++++| +|+++++++   +.+..++||.+.++|. |.|++.+|+  ++++++++++|+.....  ..
T Consensus       709 Ws~~~~~~R~~i~v~vay~sD~~~V~~~---Ll~~A~~~p~Vl~~P~-P~v~f~~fg--~s~L~fELr~~v~~~~~--~~  780 (835)
T COG3264         709 WSLRDTTTRLVIPVGVAYGSDPELVREL---LLEAAREHPRVLKDPA-PEVFFTAFG--ASSLDFELRVYVAELGD--RM  780 (835)
T ss_pred             eeccCceEEEEEEecccCCCCHHHHHHH---HHHHHHhCCCccCCCC-CeeEeeccc--ccceeEEEEEEeecccc--cc
Confidence            99987 689999999999 799999998   8999999999999986 799999999  88999999999998743  34


Q ss_pred             HHHHHHHHHHHHHHHHCCCccCCCceEEEEec
Q 010731          386 CVKEAILLDLLHVISHHRARMATPIRTVQKIY  417 (502)
Q Consensus       386 ~vr~~l~~~i~~~~~~~gI~~a~P~~~v~~~~  417 (502)
                      .++++++..|.+.|+||||++|||++.+++..
T Consensus       781 ~~~~~l~~~I~~~fre~gI~ipfpq~~v~l~~  812 (835)
T COG3264         781 PVRSELNRAILDRFRENGIEIPFPQREVRLKN  812 (835)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCCchHheEecC
Confidence            59999999999999999999999999999886

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=100.00  E-value=2.9e-37  Score=296.29  Aligned_cols=203  Identities=24%  Similarity=0.413  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccCCcEEEEeecCcceEEEEE
Q 010731          196 KAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVE  275 (502)
Q Consensus       196 ~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~g~~~~G~Ve  275 (502)
                      +++.++++++++++++..+|.+.+++++++|++|+++|||+|++++|++||++|++++||++||||++    ++..|+|+
T Consensus         2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i----~~~~G~V~   77 (206)
T PF00924_consen    2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEI----GGVEGRVE   77 (206)
T ss_dssp             -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEES----SS-EEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEE----EEeehHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999997    57999999


Q ss_pred             EEcceeEEEEEeCCCcEEEEeCcccccceEEEccC-CCceEEEEEEeecC-CCHHHHHHHHHHHHHHHHcCCCccccccc
Q 010731          276 HVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQ-KTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLH  353 (502)
Q Consensus       276 ~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr-~~~~~i~~~i~v~y-td~~~v~~i~~~l~~~l~~~~~i~~~~~~  353 (502)
                      +|||++ |++|++||+.++|||+.+.+++|.|+|+ ++.++..+.+.++| +|+++++++.+++.+.++++|.....+. 
T Consensus        78 ~I~l~~-t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-  155 (206)
T PF00924_consen   78 EIGLRS-TRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEPE-  155 (206)
T ss_dssp             EE-SSE-EEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS--
T ss_pred             hcCcce-eeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCCC-
Confidence            999999 9999999999999999999999999999 77899999999999 5889999999999999999998887553 


Q ss_pred             eEEEEEeecCCCCeeEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCcc
Q 010731          354 RRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARM  406 (502)
Q Consensus       354 p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr~~l~~~i~~~~~~~gI~~  406 (502)
                      |.+.+..++  ++++.++++|+++..++.+++.+|++++.++++.+++|||++
T Consensus       156 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~gI~~  206 (206)
T PF00924_consen  156 PRVVVDEIG--DSSLEFRIRVYVKNQDPEKYWEIRSEIRKRILEILEEHGIEI  206 (206)
T ss_dssp             EEEEEEEE---SSSEEEEEEEEEEC---CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred             CeEEEcccc--CCceEEEEEEEEEeCchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence            689999988  789999999999997788999999999999999999999985

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.9e-34  Score=293.27  Aligned_cols=208  Identities=23%  Similarity=0.392  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccCCcEEEEeecCc-ceE
Q 010731          193 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGY-EVS  271 (502)
Q Consensus       193 ~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~g~-~~~  271 (502)
                      ++.++.++++++++++.++..+|++++++++++|++|+++|||+|++++|+++|+++++++||++||||++    + +.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i----~~~~~  161 (316)
T COG0668          86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI----GSGVE  161 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEE----CCCce
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998    6 699


Q ss_pred             EEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEccCCCceEEEEEEeecC-CCHHHHHHHHHHHHHHHHcCCCccc-
Q 010731          272 GTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQ-  349 (502)
Q Consensus       272 G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~~i~~~i~v~y-td~~~v~~i~~~l~~~l~~~~~i~~-  349 (502)
                      |+|++|++++ |++|++||+.+++|||.+.++.|.|+|+...+++.+.++++| +|.++++++   +++.++..+.... 
T Consensus       162 G~V~~i~~~~-T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i---~~~~~~~~~~~~~~  237 (316)
T COG0668         162 GTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKI---LKEVLEELPEVLKI  237 (316)
T ss_pred             EEEEEEEEEE-EEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHH---HHHHHHhccccccc
Confidence            9999999999 999999999999999999999999999998888999999999 799999998   5555555555542 


Q ss_pred             cccceEEEEEeecCCCCeeEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEE
Q 010731          350 QRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQ  414 (502)
Q Consensus       350 ~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr~~l~~~i~~~~~~~gI~~a~P~~~v~  414 (502)
                      ++ +|.+++.+++  ++++.+.+++|+++.+   ++..+++++..+++.++++|+++|+|++.++
T Consensus       238 ~~-~~~v~~~~~~--~~~~~i~v~~~t~~~~---~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~  296 (316)
T COG0668         238 EP-EPVIGVSELG--DSGINIRVRFWTNPED---LWSVQRELNLRIKEALEEAGIEIPYPQQSVL  296 (316)
T ss_pred             CC-CcEEEEeecc--CCceEEEEEEEecchh---HHHHHHHHHHHHHHHHHHcCCCCCCCCeeEE
Confidence            44 3689999999  7899999999999854   8999999999999999999999999999987

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=99.82  E-value=7.6e-20  Score=200.27  Aligned_cols=224  Identities=16%  Similarity=0.208  Sum_probs=193.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHhcCCccCCcEEEEee
Q 010731          187 RNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVM-IHATQPFVINEWIQTKI  265 (502)
Q Consensus       187 ~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~-I~~~~Pf~VGD~I~i~i  265 (502)
                      .++.+.-+.+++.+++.++++++.+-.+|++.+.+++..+-.-+++.|.+.+++++++.+++ +++.+||++||+|.+  
T Consensus       476 ~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~V--  553 (714)
T KOG4629|consen  476 TKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVV--  553 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEE--
Confidence            34678888899999998888888899999999999998888889999999999999999764 667899999999997  


Q ss_pred             cCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEccCCCceEEEEEEeecC-CCHHHHHHHHHHHHHHHHcC
Q 010731          266 QGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKN  344 (502)
Q Consensus       266 ~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~~i~~~i~v~y-td~~~v~~i~~~l~~~l~~~  344 (502)
                      ||  +.-.|+++++.+ |....+||+.+++|||.+.+.+|.|+.|++.+...+++.++. |+.++++.+.+.+.++++++
T Consensus       554 Dg--~~~vVeemnLls-TvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~  630 (714)
T KOG4629|consen  554 DG--VNLVVEEMNLLS-TVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSS  630 (714)
T ss_pred             ec--eEEEEEEeccce-EEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcC
Confidence            54  899999999999 999999999999999999999999999999999999999999 79999999999999999999


Q ss_pred             CCccccccceEEEEEeecCCCC-eeEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEEEec
Q 010731          345 PQVEQQRLHRRVFLENINPESQ-SLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIY  417 (502)
Q Consensus       345 ~~i~~~~~~p~v~v~~~~~~~~-~v~i~v~~~v~~~~~~~~~~vr~~l~~~i~~~~~~~gI~~a~P~~~v~~~~  417 (502)
                      |+.....  +.+.+.++.+.++ .+.+.+....+.+|..+.|..|.++...+.+.+++.||+.-++++++....
T Consensus       631 ~~~~~p~--~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~  702 (714)
T KOG4629|consen  631 PDDYYPD--LMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDINLKN  702 (714)
T ss_pred             ccccccc--hhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchhhhc
Confidence            9877322  3667777664322 455556666777888899999999999999999999999866666554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	502
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	1e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 22/240 (9%)

Query: 157 VLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGF 216
           ++     ++ +I      L  +   D+T A     +F    V   +    +   +  +G 
Sbjct: 37  IIIVGLIIARMISNAVNRLMISRKIDATVA-----DFLSALVRYGIIAFTLIAALGRVGV 91

Query: 217 STQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEH 276
            T   +   G   +++ LA +   +N  + V++   +PF   E++   + G  V+GTV  
Sbjct: 92  QTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVD--LGG--VAGTVLS 147

Query: 277 VGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVA 335
           V  +S T +R  D + + IPN K     + N S++   R +  + +++  D+ +V  I  
Sbjct: 148 VQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI-- 204

Query: 336 DMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS-----RFEEYLCVKEA 390
            +  ++    ++ + R    V L  +   S S+N +V  +  +       ++    +K  
Sbjct: 205 -LTNIIQSEDRILKDREM-TVRLNELG-AS-SINFVVRVWSNSGDLQNVYWDVLERIKRE 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 76/487 (15%), Positives = 154/487 (31%), Gaps = 169/487 (34%)

Query: 74  LVAFAAWGLVPLVRLGRTIFLNRTDGSW---KRSRTHYILTSYLQPLLLWTGVTLICREL 130
           +            ++   IF       W   K   +   +   LQ L           ++
Sbjct: 166 VALDVCLSYKVQCKMDFKIF-------WLNLKNCNSPETVLEMLQKL---------LYQI 209

Query: 131 DP-LVLPSETSQGVKQRVLNFVRSLSTVLA---FAYCLSSLIQQIQKFLTEANDADSTDA 186
           DP     S+ S  +K R+ +    L  +L    +  CL  L+      L    +A + +A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LV------LLNVQNAKAWNA 261

Query: 187 RNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSS 246
               FN + K                                 +LLT   +++ T+FLS+
Sbjct: 262 ----FNLSCK---------------------------------ILLTTRFKQV-TDFLSA 283

Query: 247 ------VMIHATQPFVINE-------WIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAV 293
                  + H +     +E       ++  + Q               P       RE +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-------------LP-------REVL 323

Query: 294 HIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLH 353
               +   ++++    +        +    H++  K+ +I+     VL   P  E +++ 
Sbjct: 324 TT--NPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVL--EPA-EYRKMF 375

Query: 354 RR--VFLENINPESQSLNIL------------VSCFVKTS----RFEEYLCVKEAILLDL 395
            R  VF  + +  +  L+++            V+   K S    + +E      +I L+L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 396 L----HVISHHRARMATPIRTVQKIYSEP---DLENI--PFADT-IFTHSRAAANRPFLL 445
                +  + HR         V   Y+ P   D +++  P+ D   ++H           
Sbjct: 436 KVKLENEYALHR-------SIVDH-YNIPKTFDSDDLIPPYLDQYFYSH----------- 476

Query: 446 IEPSY---KISSDDKIKASTRAARN----EEKIRRLNQPQNL---ILRHIHRLDWYQLLT 495
           I   +    I   +++        +    E+KIR  +   N    IL  + +L +Y+   
Sbjct: 477 I--GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 496 TKRARQY 502
                +Y
Sbjct: 535 CDNDPKY 541

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	502
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	100.0
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	100.0
2e6z_A	59	Transcription elongation factor SPT5; KOW motif, s	84.43

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=100.00  E-value=1.6e-45  Score=370.31  Aligned_cols=244  Identities=18%  Similarity=0.248  Sum_probs=220.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Q 010731          156 TVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLA  235 (502)
Q Consensus       156 ~il~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfA  235 (502)
                      ++++++|++.+++..+.+.+..+..     .+.+...++.++++++++++++++++..+|+++++++|++|++|+++|||
T Consensus        36 ~i~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a  110 (286)
T 2vv5_A           36 AIIIVGLIIARMISNAVNRLMISRK-----IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLA  110 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            4566778888888776655544433     22356788999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEccCCCceE
Q 010731          236 GREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWR  315 (502)
Q Consensus       236 aq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~~  315 (502)
                      +|++++|++||++|+++|||++||||++    ++.+|+|++|+|++ |++|++||+.++|||+.+.++.|+|||+++.++
T Consensus       111 ~q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r  185 (286)
T 2vv5_A          111 LQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRR  185 (286)
T ss_dssp             HTHHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSSSSEEE
T ss_pred             HHHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCCCCcEE
Confidence            9999999999999999999999999997    56999999999999 999999999999999999999999999998889


Q ss_pred             EEEEEeecC-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeecCCCCeeEEEEEEEEecCChhhHHHHHHHHHHH
Q 010731          316 IKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLD  394 (502)
Q Consensus       316 i~~~i~v~y-td~~~v~~i~~~l~~~l~~~~~i~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr~~l~~~  394 (502)
                      +.++++++| +|+++++++   ++++++++|.+..++. |.|.+.+++  ++++++++++|+++.   +++++|++++++
T Consensus       186 ~~~~v~v~y~~d~~~v~~~---l~~~~~~~~~vl~~p~-p~v~v~~~~--~~~i~~~v~~~~~~~---~~~~~~~~l~~~  256 (286)
T 2vv5_A          186 NEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSG---DLQNVYWDVLER  256 (286)
T ss_dssp             EEEEEEECTTSCHHHHHHH---HHHHHHHCTTBCTTSC-EEEEEEEEC--SSSEEEEEEEEEETT---THHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCHHHHHHH---HHHHHHhCcccccCCC-CEEEEEEec--CCeEEEEEEEEEccc---hHHHHHHHHHHH
Confidence            999999999 699999987   8889999999887764 799999999  789999999999984   478999999999


Q ss_pred             HHHHHHHCCCccCCCceEEEEecC
Q 010731          395 LLHVISHHRARMATPIRTVQKIYS  418 (502)
Q Consensus       395 i~~~~~~~gI~~a~P~~~v~~~~~  418 (502)
                      +++.|+++||++|||++++|....
T Consensus       257 i~~~~~~~gI~ip~P~~~v~~~~~  280 (286)
T 2vv5_A          257 IKREFDAAGISFPYPQMDVNFKRV  280 (286)
T ss_dssp             HHHHHHHHTCCCCCCEEEEEEECC
T ss_pred             HHHHHHHCCCcCCCCceEEEeccC
Confidence            999999999999999999998753

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=100.00  E-value=2.7e-43  Score=353.96  Aligned_cols=217  Identities=17%  Similarity=0.263  Sum_probs=192.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccCCcEEEEeec
Q 010731          187 RNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQ  266 (502)
Q Consensus       187 ~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~  266 (502)
                      ..++.++++++++++++++++++++..+|++.++++|++|++|+++|||+|++++|++||++|+++|||++||||++   
T Consensus        61 ~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i---  137 (285)
T 3udc_A           61 IDTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI---  137 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE---
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999998   


Q ss_pred             CcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEccCCCceEEEEEEeecC-CCHHHHHHHHHHHHHHH-HcC
Q 010731          267 GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVL-AKN  344 (502)
Q Consensus       267 g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~~i~~~i~v~y-td~~~v~~i~~~l~~~l-~~~  344 (502)
                       ++.+|+|++|++|+ |++|++||+.++|||+.+  +.++|||++. .+..++++++| +|.++++++++++.+.+ +.+
T Consensus       138 -~~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~  212 (285)
T 3udc_A          138 -NGISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSR  212 (285)
T ss_dssp             -TTEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCCC-ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcc
Confidence             56999999999999 999999999999999999  4699999864 55568999999 69999988866554443 444


Q ss_pred             CCccccccceEEEEEeecCCCCeeEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 010731          345 PQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYS  418 (502)
Q Consensus       345 ~~i~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr~~l~~~i~~~~~~~gI~~a~P~~~v~~~~~  418 (502)
                      +...+++  |.+.+.+++  ++++++++++|+++.   +++.+|+++++++++.|+++||++|||+|++|+...
T Consensus       213 ~~~~~~~--~~v~~~~~~--~s~i~~~v~~~~~~~---~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~~  279 (285)
T 3udc_A          213 DDLIEGP--TVLGITDMQ--DSKLVIMVYAKTQPM---QKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKRV  279 (285)
T ss_dssp             SSBSSCC--EEEEEEEEE--TTEEEEEEEEEESTT---CHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEEC
T ss_pred             cccccCc--ccccccccC--CCEEEEEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCcC
Confidence            4444333  578999999  789999999999874   468999999999999999999999999999999874

>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.43  E-value=1.2  Score=33.13  Aligned_cols=46  Identities=15%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             CCccCCcEEEEeecC--cceEEEEEEEcceeEEEEEe---CCCcEEEEeCccc
Q 010731          253 QPFVINEWIQTKIQG--YEVSGTVEHVGWWSPTIIRG---DDREAVHIPNHKF  300 (502)
Q Consensus       253 ~Pf~VGD~I~i~i~g--~~~~G~Ve~I~l~~TT~irt---~d~~~v~IPNs~l  300 (502)
                      -.|.+||.|++ ++|  .+..|+|++++--. ..+.-   .-.+.+.+|++.+
T Consensus         6 ~~f~~GD~V~V-~~Gpf~g~~G~V~evd~e~-v~V~v~~fg~~tpvel~~~qv   56 (59)
T 2e6z_A            6 SGFQPGDNVEV-CEGELINLQGKILSVDGNK-ITIMPKHEDLKDMLEFPAQEL   56 (59)
T ss_dssp             SSCCTTSEEEE-CSSTTTTCEEEECCCBTTE-EEEEECCSSCCSCEEEETTTE
T ss_pred             ccCCCCCEEEE-eecCCCCCEEEEEEEeCCE-EEEEEEecCCCceEEEcHHHE
Confidence            37999999999 565  36899999998643 44433   1134566666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	502
d2vv5a1	67	b.38.1.3 (A:113-179) Mechanosensitive channel prot	1e-11

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 242 NFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFT 301
           N  + V++   +PF   E++        V+GTV  V  +S T +R  D + + IPN K  
Sbjct: 5   NLAAGVLLVMFRPFRAGEYVDLG----GVAGTVLSVQIFS-TTMRTADGKIIVIPNGKII 59

Query: 302 VNVVRNLS 309
              + N S
Sbjct: 60  AGNIINFS 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	502
d2vv5a1	67	Mechanosensitive channel protein MscS (YggB), midd	99.82
d2vv5a2	101	Mechanosensitive channel protein MscS (YggB), C-te	99.65
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	98.95
d1nz9a_	58	N-utilization substance G protein NusG, C-terminal	83.56
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	81.64

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=6e-21  Score=148.08  Aligned_cols=66  Identities=30%  Similarity=0.451  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhcCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEcc
Q 010731          239 IFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS  309 (502)
Q Consensus       239 ~l~N~~aGi~I~~~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~s  309 (502)
                      +++|++||++|+++|||++||||++    ++..|+|++|+|++ |++++.||+.++|||+.+.+++|.|||
T Consensus         2 tlsN~~sGi~i~~~~pf~vGD~I~i----~~~~G~V~~I~l~~-T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           2 SLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             cHHHHHHHhhheeeCCccCCCEEEE----CCEEEEEEEEeceE-EEEEccCCCEEEEECHHHcCCccEECc
Confidence            7899999999999999999999997    56999999999999 999999999999999999999999997

>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain
family: Mechanosensitive channel protein MscS (YggB), C-terminal domain
domain: Mechanosensitive channel protein MscS (YggB), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.1e-15  Score=127.28  Aligned_cols=99  Identities=14%  Similarity=0.204  Sum_probs=90.9

Q ss_pred             CCCceEEEEEEeecC-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeecCCCCeeEEEEEEEEecCChhhHHHHH
Q 010731          310 QKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVK  388 (502)
Q Consensus       310 r~~~~~i~~~i~v~y-td~~~v~~i~~~l~~~l~~~~~i~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr  388 (502)
                      |.+.+|+.+.++|+| +|+++++++   ++++++++|.+..++. |.|.+.+++  ++++.+++++|+++.+   ++.++
T Consensus         1 R~~~RR~~~~i~v~y~~d~~~v~~i---l~~~~~~~~~v~~~p~-p~v~~~~~~--~s~i~~~v~~w~~~~~---~~~~~   71 (101)
T d2vv5a2           1 REPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSGD---LQNVY   71 (101)
T ss_dssp             SSSEEEEEEEEEECTTSCHHHHHHH---HHHHHHHCTTBCTTSC-EEEEEEEEC--SSSEEEEEEEEEETTT---HHHHH
T ss_pred             CCCceEEEEEEEEccCCCHHHHHHH---HHHHHHhChhhhcccC-chhhcccCC--CceEEEEEEEEecchH---HHHHH
Confidence            457799999999999 799999998   8889999999999876 799999999  7899999999999854   68999


Q ss_pred             HHHHHHHHHHHHHCCCccCCCceEEEEec
Q 010731          389 EAILLDLLHVISHHRARMATPIRTVQKIY  417 (502)
Q Consensus       389 ~~l~~~i~~~~~~~gI~~a~P~~~v~~~~  417 (502)
                      ++++.+|+++|+++||++|||+|++|+..
T Consensus        72 ~~l~~~I~~~l~~~gI~ip~P~~~v~~~~  100 (101)
T d2vv5a2          72 WDVLERIKREFDAAGISFPYPQMDVNFKR  100 (101)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCcCCCCcEEEEEec
Confidence            99999999999999999999999999864

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.7e-09  Score=86.61  Aligned_cols=77  Identities=12%  Similarity=0.131  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Q 010731          156 TVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLA  235 (502)
Q Consensus       156 ~il~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfA  235 (502)
                      .++.++|++.++++...+...++.+.     +++..+++.+++++.+++++++++++.+|+|++++++++|++|+++|||
T Consensus        10 ~il~i~~~i~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGfa   84 (86)
T d2vv5a3          10 AIIIVGLIIARMISNAVNRLMISRKI-----DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLA   84 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            45567888888888776666555442     3356788999999999999999999999999999999999999999999


Q ss_pred             hh
Q 010731          236 GR  237 (502)
Q Consensus       236 aq  237 (502)
                      +|
T Consensus        85 ~Q   86 (86)
T d2vv5a3          85 LQ   86 (86)
T ss_dssp             HT
T ss_pred             cC
Confidence            98

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.56  E-value=0.42  Score=33.75  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             CccCCcEEEEeecC--cceEEEEEEEcc
Q 010731          254 PFVINEWIQTKIQG--YEVSGTVEHVGW  279 (502)
Q Consensus       254 Pf~VGD~I~i~i~g--~~~~G~Ve~I~l  279 (502)
                      .|++||+|++ ++|  .+..|+|+++.-
T Consensus         4 ~F~~Gd~V~I-~~GpF~g~~g~V~~i~~   30 (58)
T d1nz9a_           4 AFREGDQVRV-VSGPFADFTGTVTEINP   30 (58)
T ss_dssp             SCCTTCEEEE-CSGGGTTCEEEEEEEET
T ss_pred             cccCCCEEEE-eccCCCCCEEEEEEEcC
Confidence            6999999998 555  368899999843

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.64  E-value=1.7  Score=30.96  Aligned_cols=43  Identities=12%  Similarity=0.149  Sum_probs=28.6

Q ss_pred             cCCccCCcEEEEeecC--cceEEEEEEEcceeEEEEEeCCCcEEEE
Q 010731          252 TQPFVINEWIQTKIQG--YEVSGTVEHVGWWSPTIIRGDDREAVHI  295 (502)
Q Consensus       252 ~~Pf~VGD~I~i~i~g--~~~~G~Ve~I~l~~TT~irt~d~~~v~I  295 (502)
                      .+-|++||.|++ ++|  .|.+|.|.++.=-..|.+-+..++-+.|
T Consensus         8 rK~F~~GDhVkV-i~G~~~g~tGlVV~v~~~~v~~~SD~t~~Ei~V   52 (62)
T d2do3a1           8 RKYFKMGDHVKV-IAGRFEGDTGLIVRVEENFVILFSDLTMHELKV   52 (62)
T ss_dssp             CSSCCTTCEEEE-SSSTTTTCEEEEEEECSSCEEEEESSSCSEEEE
T ss_pred             eeccCCCCeEEE-eccEEcCccEEEEEEeCCEEEEEeCCCCCEEEE
Confidence            567999999999 776  3678999888655534444434444433