Citrus Sinensis ID: 010744

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
MGSYRNNLNLRFGSGTDSRFKPPFLRRLETMKTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEATSKDEEMF
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccc
cccccccccEEcccccccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHcccHHEEEEccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHc
mgsyrnnlnlrfgsgtdsrfkppflRRLETMKTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEafnagpsdlgYLTFIRNFVQglssplagvlvinydrpavLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIadsykdgvrgagFGLLSLVGTMGGIGGGVLATIMAGhqfwgvpgWRCAFILMATLSVLIAFLVLVFVvdprkkastfhgtgenfdrdelvekgNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADrisqayphsgrvMCAQFsafmgipfswFLLTAIPQSVSNYYTYAVTLVLMGLTIswnataangpmfaevvpakhrTMIYAFDrafegsfssfaapLVGILSekmfgydskaidpvmgsPREALALSRGLLSMMAVPfglcclfytplykiFKRDRENARLASFkeatskdeemf
mgsyrnnlnlrfgsgtdsrfkppFLRRLETMKTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKkastfhgtgenfdrdelvekGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLasfkeatskdeemf
MGSYRNNLNLRFGSGTDSRFKPPFLRRLETMKTRKVLGislslilinlaaiMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSlvgtmggigggvlatimAGHQFWGVPGWRCAFILMATlsvliaflvlvfvvDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEATSKDEEMF
**********************PFLRRLETMKTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKR*********************
**************************************ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVD*************************TSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDR*******************
MGSYRNNLNLRFGSGTDSRFKPPFLRRLETMKTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKE*********
*********************PPFLR*LETMKTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRK***************ELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEAT*******
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGSYRNNLNLRFGSGTDSRFKPPFLRRLETMKTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEATSKDEEMF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query502 2.2.26 [Sep-21-2011]
P94131413 Cis,cis-muconate transpor yes no 0.328 0.399 0.268 0.0006
Q9GQQ0605 Protein spinster OS=Droso no no 0.723 0.6 0.227 0.0007
>sp|P94131|MUCK_ACIAD Cis,cis-muconate transport protein OS=Acinetobacter sp. (strain ADP1) GN=mucK PE=3 SV=1 Back     alignment and function desciption
 Score = 46.2 bits (108), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)

Query: 52  MERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTI 111
           ++ AD  LL      +   FN    + G L         +     G     + R  ++ I
Sbjct: 28  VDGADLMLLSYSLNSIKAEFNLSTVEAGMLGSFTLAGMAIGGIFGGWACDRFGRVRIVVI 87

Query: 112 GILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLS 171
            IL ++  T  +G +Q F+  G+ R     GL  +  A  + +A+      R    G L 
Sbjct: 88  SILTFSILTCGLGLTQSFIQFGVLRFFASLGLGSLYIACNTLMAEYVPTKYRTTVLGTLQ 147

Query: 172 LVGTMGGIGGGVLATIMAGHQFWGVP--GWRCAFILMATLSVLIAFLVLVFVVDP 224
              T+G I    +AT++AG   W +P  GWR  F  +A + VL+A L+  FV +P
Sbjct: 148 AGWTVGYI----VATLLAG---WLIPDHGWRVLF-YVAIIPVLMAVLMHFFVPEP 194
Probable uptake of muconate.
Acinetobacter sp. (strain ADP1) (taxid: 62977)
>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
297735205517 unnamed protein product [Vitis vinifera] 0.972 0.943 0.768 0.0
225430840494 PREDICTED: uncharacterized protein LOC10 0.972 0.987 0.768 0.0
255568249485 carbohydrate transporter, putative [Rici 0.922 0.954 0.796 0.0
224096920462 predicted protein [Populus trichocarpa] 0.900 0.978 0.774 0.0
356496795484 PREDICTED: uncharacterized protein LOC10 0.912 0.946 0.764 0.0
357483281538 hypothetical protein MTR_5g019490 [Medic 0.924 0.862 0.729 0.0
297802278489 predicted protein [Arabidopsis lyrata su 0.898 0.922 0.737 0.0
15234530489 major facilitator protein [Arabidopsis t 0.922 0.946 0.716 0.0
449461421467 PREDICTED: uncharacterized protein LOC10 0.926 0.995 0.727 0.0
242047864487 hypothetical protein SORBIDRAFT_02g00634 0.926 0.954 0.675 0.0
>gi|297735205|emb|CBI17567.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/493 (76%), Positives = 426/493 (86%), Gaps = 5/493 (1%)

Query: 9   NLRFGSGTDSRFKPPFLRRLETMKTRKVLGISLSLILINLAAIMERADENLLPSVYKEVS 68
           +LRF   +  R KP F   L  MKTRK+ GISLSL LINLA+IMERADENLLP+VYKEVS
Sbjct: 29  SLRFRFRSLLRSKPLFPTHLAAMKTRKIFGISLSLFLINLASIMERADENLLPAVYKEVS 88

Query: 69  EAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQH 128
           EAF+AGPS+LGYLTFIRNFVQGL+SPLAGVLVI++DRP VL +G +CWA STAAVGASQ 
Sbjct: 89  EAFSAGPSELGYLTFIRNFVQGLASPLAGVLVISHDRPTVLAMGTVCWAISTAAVGASQQ 148

Query: 129 FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIM 188
           ++ V  WRAVNGFGLAIVIPALQSFIADSYKD VRG GFG L+L+G++GGIGGGVLAT+M
Sbjct: 149 YMQVAFWRAVNGFGLAIVIPALQSFIADSYKDSVRGTGFGFLNLIGSLGGIGGGVLATVM 208

Query: 189 AGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGN 248
           AG QFWG+PGWRCAFI+MATLS LI FLV  +VVDPR+  +  H +GEN DR+ L++K  
Sbjct: 209 AGQQFWGIPGWRCAFIMMATLSSLIGFLVFQYVVDPRRTINITHDSGENSDRNSLLDKSK 268

Query: 249 TSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAAL 308
            S  SVWLESW ATKAVIKV TFQIIVLQG+VGSLPWTAMVFFTMWFELIGFDH+S+AAL
Sbjct: 269 ASSVSVWLESWTATKAVIKVQTFQIIVLQGVVGSLPWTAMVFFTMWFELIGFDHNSSAAL 328

Query: 309 LSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 368
           LS+FAIGCA+GS LGG++ADR+SQ YPHSGR+MCAQFSA MGIPFSWFLLT IPQSVS++
Sbjct: 329 LSVFAIGCAMGSLLGGLIADRMSQIYPHSGRIMCAQFSALMGIPFSWFLLTVIPQSVSSW 388

Query: 369 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGIL 428
           +T+  TL LMGLTISWN TAAN PMFAEVVP KHRTMIYAFDRAFEGSFSSFAAP+VGIL
Sbjct: 389 FTFGTTLFLMGLTISWNGTAANAPMFAEVVPVKHRTMIYAFDRAFEGSFSSFAAPMVGIL 448

Query: 429 SEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARL 488
           SEKMFGYD K +DPV GS + A ALSRGLLSMMAVPFGLCCLFYTPLY +F+RDRENAR+
Sbjct: 449 SEKMFGYDPKTVDPVSGSAQAAFALSRGLLSMMAVPFGLCCLFYTPLYVVFRRDRENARI 508

Query: 489 ASFKEATSKDEEM 501
           AS KE     EEM
Sbjct: 509 ASLKE-----EEM 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430840|ref|XP_002273483.1| PREDICTED: uncharacterized protein LOC100254794 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568249|ref|XP_002525099.1| carbohydrate transporter, putative [Ricinus communis] gi|223535558|gb|EEF37226.1| carbohydrate transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224096920|ref|XP_002310787.1| predicted protein [Populus trichocarpa] gi|222853690|gb|EEE91237.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356496795|ref|XP_003517251.1| PREDICTED: uncharacterized protein LOC100812646 [Glycine max] Back     alignment and taxonomy information
>gi|357483281|ref|XP_003611927.1| hypothetical protein MTR_5g019490 [Medicago truncatula] gi|355513262|gb|AES94885.1| hypothetical protein MTR_5g019490 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297802278|ref|XP_002869023.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314859|gb|EFH45282.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15234530|ref|NP_195397.1| major facilitator protein [Arabidopsis thaliana] gi|2464901|emb|CAB16804.1| putative protein [Arabidopsis thaliana] gi|7270628|emb|CAB80345.1| putative protein [Arabidopsis thaliana] gi|17380886|gb|AAL36255.1| unknown protein [Arabidopsis thaliana] gi|21689671|gb|AAM67457.1| unknown protein [Arabidopsis thaliana] gi|332661301|gb|AEE86701.1| major facilitator protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449461421|ref|XP_004148440.1| PREDICTED: uncharacterized protein LOC101209309 [Cucumis sativus] gi|449514744|ref|XP_004164467.1| PREDICTED: uncharacterized protein LOC101231698 [Cucumis sativus] Back     alignment and taxonomy information
>gi|242047864|ref|XP_002461678.1| hypothetical protein SORBIDRAFT_02g006340 [Sorghum bicolor] gi|241925055|gb|EER98199.1| hypothetical protein SORBIDRAFT_02g006340 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
TAIR|locus:2115430489 AT4G36790 "AT4G36790" [Arabido 0.900 0.924 0.661 1.1e-160
TAIR|locus:2046313473 AT2G18590 "AT2G18590" [Arabido 0.918 0.974 0.528 6.1e-126
TAIR|locus:2184163488 AT5G10190 "AT5G10190" [Arabido 0.856 0.881 0.384 8.5e-81
TAIR|locus:2194749490 UNE2 "AT1G78130" [Arabidopsis 0.874 0.895 0.378 2.6e-79
GENEDB_PFALCIPARUM|PF14_0260809 PF14_0260 "metabolite/drug tra 0.476 0.295 0.235 1.1e-08
UNIPROTKB|Q8ILI3809 PF14_0260 "Metabolite/drug tra 0.476 0.295 0.235 1.1e-08
WB|WBGene00013739518 Y111B2A.19 [Caenorhabditis ele 0.302 0.293 0.25 7.9e-05
TAIR|locus:2115430 AT4G36790 "AT4G36790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1565 (556.0 bits), Expect = 1.1e-160, P = 1.1e-160
 Identities = 307/464 (66%), Positives = 354/464 (76%)

Query:    31 MKTRKVLGXXXXXXXXXXXXXMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQG 90
             +KT   LG             MERADENLLPSVYKEVSEAFNAGPSDLGYLTF+RNFVQG
Sbjct:    33 IKTGTFLGVSISLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFVRNFVQG 92

Query:    91 LSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPAL 150
             L+SPLAGVLVI YDRP VL IG  CWA STAAVGAS +F+ V +WRAVNGFGLAIVIPAL
Sbjct:    93 LASPLAGVLVITYDRPIVLAIGTFCWALSTAAVGASSYFIQVALWRAVNGFGLAIVIPAL 152

Query:   151 QSFIADSYKDGVRGAGFGLLSXXXXXXXXXXXXXXXXXAGHQFWGVPGWRCAFILMATXX 210
             QSFIADSYKDG RGAGFG+L+                 AG +FWG+PGWRCAFI+MA   
Sbjct:   153 QSFIADSYKDGARGAGFGMLNLIGTIGGIGGGVVATVMAGSEFWGIPGWRCAFIMMAALS 212

Query:   211 XXXXXXXXXXXXDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPT 270
                         DPRK          N +R+EL+     S +SVW +S  A K+V+KV T
Sbjct:   213 AVIGLLVFLFVVDPRK----------NIEREELMAHKMNS-NSVWNDSLAAAKSVVKVST 261

Query:   271 FQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI 330
             FQIIV QGI+GS PWTAMVFFTMWFELIGFDH+ TAALL +FA G A+G+ +GG++AD++
Sbjct:   262 FQIIVAQGIIGSFPWTAMVFFTMWFELIGFDHNQTAALLGVFATGGAIGTLMGGIIADKM 321

Query:   331 SQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAAN 390
             S+ YP+SGRVMCAQFSAFMGIPFS  LL  IPQS S+Y  +++TL LMGLTI+W  +A N
Sbjct:   322 SRIYPNSGRVMCAQFSAFMGIPFSIILLKVIPQSTSSYSIFSITLFLMGLTITWCGSAVN 381

Query:   391 GPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSP-RE 449
              PMFAEVVP +HRTMIYAFDRAFEGSFSSFAAPLVGILSEK+FGYDS+ IDP+ GS  RE
Sbjct:   382 APMFAEVVPPRHRTMIYAFDRAFEGSFSSFAAPLVGILSEKLFGYDSRGIDPLKGSSVRE 441

Query:   450 ALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKE 493
             A ALS+GLLSMMAVPFGLCCL YTPL+ +F++DRENA++AS KE
Sbjct:   442 ADALSKGLLSMMAVPFGLCCLCYTPLHFVFQKDRENAKIASSKE 485
GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2046313 AT2G18590 "AT2G18590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184163 AT5G10190 "AT5G10190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194749 UNE2 "AT1G78130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF14_0260 PF14_0260 "metabolite/drug transporter" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8ILI3 PF14_0260 "Metabolite/drug transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
WB|WBGene00013739 Y111B2A.19 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024995001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (446 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 9e-22
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 8e-16
TIGR00880141 TIGR00880, 2_A_01_02, Multidrug resistance protein 1e-07
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 5e-07
TIGR00895398 TIGR00895, 2A0115, benzoate transport 1e-06
TIGR00900365 TIGR00900, 2A0121, H+ Antiporter protein 2e-06
TIGR00893399 TIGR00893, 2A0114, D-galactonate transporter 4e-06
TIGR00881379 TIGR00881, 2A0104, phosphoglycerate transporter fa 1e-05
COG2814394 COG2814, AraJ, Arabinose efflux permease [Carbohyd 1e-04
TIGR00711485 TIGR00711, efflux_EmrB, drug resistance transporte 7e-04
COG2271448 COG2271, UhpC, Sugar phosphate permease [Carbohydr 8e-04
PRK12307426 PRK12307, PRK12307, putative sialic acid transport 0.004
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information 
 Score = 96.0 bits (239), Expect = 9e-22
 Identities = 74/365 (20%), Positives = 141/365 (38%), Gaps = 32/365 (8%)

Query: 58  NLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 117
            L P++   ++E     P+++G L    +    L+ PLAG L   + R  VL IG+L +A
Sbjct: 14  LLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFA 73

Query: 118 FSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMG 177
                +  +     + + R + G G   + PA  + IAD +    RG   GLLS    +G
Sbjct: 74  LGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLG 133

Query: 178 GIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGEN 237
              G +L  ++A        GWR AF+++A L++L A L  + +  P  ++         
Sbjct: 134 AALGPLLGGLLASL-----FGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPA--- 185

Query: 238 FDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFEL 297
                  E+    +   W       K +++ P   +++   + G   +  + +  ++ E+
Sbjct: 186 -------EEAPAPLVPAW-------KLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV 231

Query: 298 IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFL 357
           +G        LL L  +  A+G  L G ++DR+         ++         +  +   
Sbjct: 232 LGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLG---RRRRLLLALLLLILAALGLALLS 288

Query: 358 LTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSF 417
           LT       +     V L+L+G        A N  + +++ P + R              
Sbjct: 289 LT------ESSLWLLVALLLLGFGAGLVFPALNA-LVSDLAPKEERGTASGLYNTAGSLG 341

Query: 418 SSFAA 422
            +   
Sbjct: 342 GALGP 346

Length = 346
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport Back     alignment and domain information
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein Back     alignment and domain information
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter Back     alignment and domain information
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein Back     alignment and domain information
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 502
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 100.0
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 100.0
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 100.0
KOG1330493 consensus Sugar transporter/spinster transmembrane 100.0
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 100.0
PRK03545390 putative arabinose transporter; Provisional 100.0
PRK11663434 regulatory protein UhpC; Provisional 100.0
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 100.0
PRK14995495 methyl viologen resistance protein SmvA; Provision 100.0
PRK12307426 putative sialic acid transporter; Provisional 100.0
PRK10406432 alpha-ketoglutarate transporter; Provisional 100.0
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 100.0
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 100.0
PRK10642490 proline/glycine betaine transporter; Provisional 100.0
TIGR00892455 2A0113 monocarboxylate transporter 1. 100.0
TIGR00891405 2A0112 putative sialic acid transporter. 100.0
PRK09705393 cynX putative cyanate transporter; Provisional 100.0
PLN00028476 nitrate transmembrane transporter; Provisional 100.0
TIGR00893399 2A0114 d-galactonate transporter. 100.0
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 100.0
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 100.0
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 100.0
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 100.0
PRK10091382 MFS transport protein AraJ; Provisional 100.0
PRK10213394 nepI ribonucleoside transporter; Reviewed 100.0
PRK15402406 multidrug efflux system translocase MdfA; Provisio 100.0
PRK15075434 citrate-proton symporter; Provisional 100.0
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 100.0
PRK03699394 putative transporter; Provisional 100.0
PRK10077479 xylE D-xylose transporter XylE; Provisional 100.0
PRK09952438 shikimate transporter; Provisional 100.0
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 100.0
PRK03893496 putative sialic acid transporter; Provisional 100.0
TIGR00881379 2A0104 phosphoglycerate transporter family protein 100.0
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 100.0
PRK10504471 putative transporter; Provisional 100.0
PRK10489417 enterobactin exporter EntS; Provisional 100.0
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 100.0
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 100.0
PRK15403413 multidrug efflux system protein MdtM; Provisional 100.0
TIGR00900365 2A0121 H+ Antiporter protein. 100.0
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 100.0
PRK05122399 major facilitator superfamily transporter; Provisi 100.0
TIGR00897402 2A0118 polyol permease family. This family of prot 100.0
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 100.0
TIGR00895398 2A0115 benzoate transport. 100.0
PRK11043401 putative transporter; Provisional 100.0
PRK12382392 putative transporter; Provisional 100.0
PRK03633381 putative MFS family transporter protein; Provision 100.0
PRK11646400 multidrug resistance protein MdtH; Provisional 100.0
PRK11652394 emrD multidrug resistance protein D; Provisional 100.0
PRK10133438 L-fucose transporter; Provisional 100.0
PRK11195393 lysophospholipid transporter LplT; Provisional 100.0
PRK09874408 drug efflux system protein MdtG; Provisional 100.0
KOG2532466 consensus Permease of the major facilitator superf 100.0
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 100.0
TIGR00898505 2A0119 cation transport protein. 100.0
PRK10473392 multidrug efflux system protein MdtL; Provisional 100.0
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 100.0
PRK10054395 putative transporter; Provisional 100.0
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 100.0
KOG0569485 consensus Permease of the major facilitator superf 100.0
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 100.0
KOG2533495 consensus Permease of the major facilitator superf 100.0
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 100.0
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 100.0
TIGR00896355 CynX cyanate transporter. This family of proteins 100.0
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 100.0
PRK11010491 ampG muropeptide transporter; Validated 100.0
TIGR00902382 2A0127 phenyl proprionate permease family protein. 100.0
TIGR00805633 oat sodium-independent organic anion transporter. 100.0
PRK15011393 sugar efflux transporter B; Provisional 99.98
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.97
COG2807395 CynX Cyanate permease [Inorganic ion transport and 99.97
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.97
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 99.97
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.97
COG0738422 FucP Fucose permease [Carbohydrate transport and m 99.97
PRK09528420 lacY galactoside permease; Reviewed 99.97
TIGR00901356 2A0125 AmpG-related permease. 99.97
PRK11902402 ampG muropeptide transporter; Reviewed 99.97
KOG0254513 consensus Predicted transporter (major facilitator 99.97
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 99.96
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.96
KOG3764464 consensus Vesicular amine transporter [Intracellul 99.96
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.96
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.96
PRK10207489 dipeptide/tripeptide permease B; Provisional 99.96
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 99.96
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.96
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.96
KOG2615451 consensus Permease of the major facilitator superf 99.96
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.96
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 99.95
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 99.95
PTZ00207591 hypothetical protein; Provisional 99.94
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 99.94
PRK09584500 tppB putative tripeptide transporter permease; Rev 99.93
PRK09669444 putative symporter YagG; Provisional 99.93
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.93
PRK10429473 melibiose:sodium symporter; Provisional 99.92
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.92
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.92
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.91
KOG2563480 consensus Permease of the major facilitator superf 99.91
PF13347428 MFS_2: MFS/sugar transport protein 99.9
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.9
PRK09848448 glucuronide transporter; Provisional 99.9
PRK15462493 dipeptide/tripeptide permease D; Provisional 99.89
PRK11462460 putative transporter; Provisional 99.89
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.89
COG2211467 MelB Na+/melibiose symporter and related transport 99.88
KOG3626735 consensus Organic anion transporter [Secondary met 99.87
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.86
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 99.82
COG2270438 Permeases of the major facilitator superfamily [Ge 99.82
KOG2325488 consensus Predicted transporter/transmembrane prot 99.79
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 99.76
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.72
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.66
KOG2816463 consensus Predicted transporter ADD1 (major facili 99.65
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 99.63
PRK09528420 lacY galactoside permease; Reviewed 99.62
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.62
PRK10642490 proline/glycine betaine transporter; Provisional 99.6
PRK05122399 major facilitator superfamily transporter; Provisi 99.58
PRK15011393 sugar efflux transporter B; Provisional 99.58
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 99.57
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.56
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.56
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.55
PRK10489417 enterobactin exporter EntS; Provisional 99.55
PRK09874408 drug efflux system protein MdtG; Provisional 99.55
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.52
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.52
PRK12382392 putative transporter; Provisional 99.51
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.5
PRK03893496 putative sialic acid transporter; Provisional 99.49
PRK03633381 putative MFS family transporter protein; Provision 99.49
PRK03545390 putative arabinose transporter; Provisional 99.47
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.46
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 99.46
PRK03699394 putative transporter; Provisional 99.45
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.44
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.44
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 99.43
TIGR00897402 2A0118 polyol permease family. This family of prot 99.42
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.42
PRK09705393 cynX putative cyanate transporter; Provisional 99.42
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 99.39
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.38
TIGR00893399 2A0114 d-galactonate transporter. 99.38
PRK11663 434 regulatory protein UhpC; Provisional 99.37
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.36
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.35
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.35
TIGR00712 438 glpT glycerol-3-phosphate transporter. This model 99.35
KOG3098461 consensus Uncharacterized conserved protein [Funct 99.35
TIGR00891405 2A0112 putative sialic acid transporter. 99.34
PRK10054395 putative transporter; Provisional 99.33
PRK09952438 shikimate transporter; Provisional 99.32
PRK10504471 putative transporter; Provisional 99.32
PRK11010491 ampG muropeptide transporter; Validated 99.31
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.31
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 99.3
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 99.3
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.29
PRK15075434 citrate-proton symporter; Provisional 99.29
TIGR00900365 2A0121 H+ Antiporter protein. 99.29
TIGR00895398 2A0115 benzoate transport. 99.28
PRK12307426 putative sialic acid transporter; Provisional 99.27
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.27
PRK15462 493 dipeptide/tripeptide permease D; Provisional 99.26
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.25
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 99.24
KOG0637498 consensus Sucrose transporter and related proteins 99.24
TIGR00710 385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.23
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.23
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.22
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.2
PRK10213394 nepI ribonucleoside transporter; Reviewed 99.2
PRK10406432 alpha-ketoglutarate transporter; Provisional 99.2
KOG3762618 consensus Predicted transporter [General function 99.2
PF07690 352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.19
PRK09584 500 tppB putative tripeptide transporter permease; Rev 99.19
PRK11646400 multidrug resistance protein MdtH; Provisional 99.19
PRK10091382 MFS transport protein AraJ; Provisional 99.18
COG2270438 Permeases of the major facilitator superfamily [Ge 99.18
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.18
PLN00028476 nitrate transmembrane transporter; Provisional 99.18
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.18
TIGR00898505 2A0119 cation transport protein. 99.17
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.17
PRK10473 392 multidrug efflux system protein MdtL; Provisional 99.16
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 99.16
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.16
PRK11902402 ampG muropeptide transporter; Reviewed 99.15
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.14
PRK10207 489 dipeptide/tripeptide permease B; Provisional 99.14
TIGR02332 412 HpaX 4-hydroxyphenylacetate permease. This protein 99.14
PRK11195393 lysophospholipid transporter LplT; Provisional 99.14
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 99.13
TIGR00896355 CynX cyanate transporter. This family of proteins 99.12
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 99.12
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.12
TIGR00903 368 2A0129 major facilitator 4 family protein. This fa 99.11
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 99.09
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.09
PRK11102 377 bicyclomycin/multidrug efflux system; Provisional 99.08
PRK14995 495 methyl viologen resistance protein SmvA; Provision 99.05
KOG0569485 consensus Permease of the major facilitator superf 99.05
PRK11043 401 putative transporter; Provisional 99.03
PRK11652 394 emrD multidrug resistance protein D; Provisional 99.03
TIGR00901356 2A0125 AmpG-related permease. 99.03
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.02
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 99.01
COG0477338 ProP Permeases of the major facilitator superfamil 99.01
PRK10133438 L-fucose transporter; Provisional 99.0
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 99.0
KOG1330 493 consensus Sugar transporter/spinster transmembrane 98.97
KOG3574510 consensus Acetyl-CoA transporter [Inorganic ion tr 98.97
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 98.97
PRK15403 413 multidrug efflux system protein MdtM; Provisional 98.96
PF13347428 MFS_2: MFS/sugar transport protein 98.96
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 98.96
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.92
KOG2615 451 consensus Permease of the major facilitator superf 98.92
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 98.91
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 98.91
PRK09848448 glucuronide transporter; Provisional 98.9
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 98.88
TIGR00805 633 oat sodium-independent organic anion transporter. 98.87
PTZ00207 591 hypothetical protein; Provisional 98.85
TIGR00788468 fbt folate/biopterin transporter. The only functio 98.84
PRK09669444 putative symporter YagG; Provisional 98.8
PRK10429473 melibiose:sodium symporter; Provisional 98.79
KOG3762618 consensus Predicted transporter [General function 98.79
COG2807395 CynX Cyanate permease [Inorganic ion transport and 98.75
PF13000544 Acatn: Acetyl-coenzyme A transporter 1; InterPro: 98.75
KOG3764464 consensus Vesicular amine transporter [Intracellul 98.72
TIGR00880141 2_A_01_02 Multidrug resistance protein. 98.7
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 98.7
COG0738422 FucP Fucose permease [Carbohydrate transport and m 98.61
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 98.6
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 98.59
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 98.57
KOG2532 466 consensus Permease of the major facilitator superf 98.56
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 98.54
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 98.47
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 98.46
PRK11462460 putative transporter; Provisional 98.45
KOG1237571 consensus H+/oligopeptide symporter [Amino acid tr 98.45
KOG3810433 consensus Micronutrient transporters (folate trans 98.45
COG2211 467 MelB Na+/melibiose symporter and related transport 98.31
KOG0255 521 consensus Synaptic vesicle transporter SVOP and re 98.29
KOG0254513 consensus Predicted transporter (major facilitator 98.28
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 98.28
PF03219491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 98.25
KOG2533 495 consensus Permease of the major facilitator superf 98.22
PF1283277 MFS_1_like: MFS_1 like family 98.22
KOG2325 488 consensus Predicted transporter/transmembrane prot 98.12
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 98.0
COG3202509 ATP/ADP translocase [Energy production and convers 97.97
KOG2816463 consensus Predicted transporter ADD1 (major facili 97.95
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 97.87
PF07672267 MFS_Mycoplasma: Mycoplasma MFS transporter; InterP 97.74
PF1283277 MFS_1_like: MFS_1 like family 97.7
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 97.65
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 97.61
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 97.59
KOG3880409 consensus Predicted small molecule transporter inv 97.38
KOG2563 480 consensus Permease of the major facilitator superf 97.33
PRK03612521 spermidine synthase; Provisional 97.32
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 97.21
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 97.07
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 96.94
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 96.86
KOG3097390 consensus Predicted membrane protein [Function unk 96.77
KOG3626 735 consensus Organic anion transporter [Secondary met 96.65
KOG3098461 consensus Uncharacterized conserved protein [Funct 96.58
PRK03612 521 spermidine synthase; Provisional 96.47
KOG2601503 consensus Iron transporter [Inorganic ion transpor 96.33
KOG0637 498 consensus Sucrose transporter and related proteins 96.18
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 96.17
COG0477 338 ProP Permeases of the major facilitator superfamil 95.8
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 95.63
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 95.46
PF01770 412 Folate_carrier: Reduced folate carrier; InterPro: 94.72
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 94.07
KOG3574 510 consensus Acetyl-CoA transporter [Inorganic ion tr 93.82
KOG1479 406 consensus Nucleoside transporter [Nucleotide trans 93.19
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 92.61
PF03219 491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 91.35
PF00854 372 PTR2: POT family; InterPro: IPR000109 This entry r 90.29
COG4262508 Predicted spermidine synthase with an N-terminal m 89.64
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 89.13
KOG4830412 consensus Predicted sugar transporter [Carbohydrat 87.74
KOG3880409 consensus Predicted small molecule transporter inv 83.58
COG3202 509 ATP/ADP translocase [Energy production and convers 82.25
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 81.72
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-44  Score=323.24  Aligned_cols=384  Identities=18%  Similarity=0.223  Sum_probs=315.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHHhhhhchhhHHHHHhhcCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHH
Q 010744           34 RKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGI  113 (502)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  113 (502)
                      ..+++|+.++..+++++...++.+..++.+.|.+.+|.++|.+|+|++.+++.+.|.++..+.|.++||.+.|+.+.+++
T Consensus        22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL  101 (448)
T COG2271          22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhhHHHHHH--HHHhhh
Q 010744          114 LCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLA--TIMAGH  191 (502)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l~~~  191 (502)
                      ++.++..++++++++.+.+.+..+++|..+|..+|++...+..|++++|||+..++++++.++|..+.|++.  +++..+
T Consensus       102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999  888776


Q ss_pred             cccCcccchHHHHHHHHHHHHHHHHHHHhccCCccccCCCCCCCCCCchhhHhhhcCCCcchhHHHhHHHHhhhcchhHH
Q 010744          192 QFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTF  271 (502)
Q Consensus       192 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (502)
                           .+||..|++.++++++++++.++..+|+|+..--++-||-+.|..+...++++.+..+.++..  .+.+++||.+
T Consensus       182 -----~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~--~~YVL~Nk~i  254 (448)
T COG2271         182 -----GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIF--VKYVLKNKLI  254 (448)
T ss_pred             -----cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHH--HHHHHcChHH
Confidence                 799999999999999999999998888766554443333332322221222222213333333  3458999999


Q ss_pred             HHHHHHHHhhhhh-hhhHHHHHHHHHH-hCCChhhHHHHHHHHHhhhcccccchhhhhhhhc--cccCCcchhHHhhhhh
Q 010744          272 QIIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRIS--QAYPHSGRVMCAQFSA  347 (502)
Q Consensus       272 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~  347 (502)
                      |.+.+..++.... +++..|.|.|+.+ .|+|..+++...+.+-.++++|.+++||++||+-  ||.+      ...+ .
T Consensus       255 W~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p------~~~i-~  327 (448)
T COG2271         255 WLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP------MALI-F  327 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch------HHHH-H
Confidence            9998888776665 7777999999988 9999999999999999999999999999999974  5543      1111 1


Q ss_pred             hhhhhHHHHHhhhccCCcchhHHHHHHHHHHHHHHhhhccCCCccchhcccCCCchhhHHHHHHHhhhh-hhhhhHHHHH
Q 010744          348 FMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGS-FSSFAAPLVG  426 (502)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~g  426 (502)
                      .+.+.++.+.+...+.  .+..+..++++..|+......- +......|+.|.+..|++.|+...+.++ |.+.+....|
T Consensus       328 ~~~i~~~~~~~w~~~~--~~~~l~~~~l~~iGf~IyGPqm-LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g  404 (448)
T COG2271         328 MLLITASLVLYWLAPN--GSYLLDAILLFIIGFLIYGPQM-LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLG  404 (448)
T ss_pred             HHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHHHHhhHHH-HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcce
Confidence            1222222222222222  2356677888888888776664 6677788999999999999999999999 7779999999


Q ss_pred             HHHHHhcCC
Q 010744          427 ILSEKMFGY  435 (502)
Q Consensus       427 ~l~~~~~~~  435 (502)
                      ++.|. .+|
T Consensus       405 ~i~d~-~gW  412 (448)
T COG2271         405 YIADT-WGW  412 (448)
T ss_pred             eeEec-CCC
Confidence            99998 555

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>KOG3097 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 7e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
2cfq_A417 Lactose permease; transport, transport mechanism, 6e-04
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 Back     alignment and structure
 Score = 75.9 bits (187), Expect = 7e-15
 Identities = 45/336 (13%), Positives = 100/336 (29%), Gaps = 27/336 (8%)

Query: 75  PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG----ASQHFL 130
             DLG+     +   G S  + G +    +    L  G++  A     +G    A+    
Sbjct: 61  RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 120

Query: 131 HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG 190
            + +   + G+   +  P     +   +    RG    + +    +GG    +L  +   
Sbjct: 121 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180

Query: 191 HQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTS 250
                   W  A  + A  ++L+A      + D  +             +++  +  N  
Sbjct: 181 W----FNDWHAALYMPAFCAILVALFAFAMMRDTPQSC---GLPPIEEYKNDYPDDYNEK 233

Query: 251 VSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWF-----ELIGFDHSST 305
                    +  + V+       I +  +   L          W      E+  F    +
Sbjct: 234 AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY---GILDWSPTYLKEVKHFALDKS 290

Query: 306 AALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSV 365
           +    L+      G+ L G ++D++   +  +       F   + I      +       
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKV---FRGNRGATGVFFMTLVTI----ATIVYWMNPA 343

Query: 366 SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAK 401
            N     + ++++G  I        G    E+ P K
Sbjct: 344 GNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKK 378
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 100.0
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 100.0
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 100.0
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 100.0
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 100.0
2xut_A524 Proton/peptide symporter family protein; transport 99.97
2cfq_A417 Lactose permease; transport, transport mechanism, 99.97
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 99.57
2cfq_A417 Lactose permease; transport, transport mechanism, 99.49
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 99.43
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.38
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 99.26
2gfp_A 375 EMRD, multidrug resistance protein D; membrane pro 99.21
2xut_A 524 Proton/peptide symporter family protein; transport 99.17
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
Probab=100.00  E-value=1.9e-41  Score=335.33  Aligned_cols=378  Identities=13%  Similarity=0.073  Sum_probs=295.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhhhchhhHHHHHhhcCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHHHH
Q 010744           36 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC  115 (502)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  115 (502)
                      ++.++..+..+++..+...++....++.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            355677888888999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh----hhHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhhHHHHHHHHHhhh
Q 010744          116 WAFSTAAVGA----SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH  191 (502)
Q Consensus       116 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  191 (502)
                      .+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999    999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             cccCccc-chHHHHHHHHHHHHHHHHHHHhccCCccccCCCCCCCCCCchhhHhhhcCCCcchhHHHhHHHHhhhcchhH
Q 010744          192 QFWGVPG-WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPT  270 (502)
Q Consensus       192 ~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (502)
                           .+ ||+.|++.+++.++..++.++..||++......++++.+.+.... ...+.+++...++  ...++.+++|.
T Consensus       182 -----~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~  253 (451)
T 1pw4_A          182 -----FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-YNEKAEQELTAKQ--IFMQYVLPNKL  253 (451)
T ss_dssp             -----TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTH--HHHHHTSSCHH
T ss_pred             -----hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccccc-chhhhhccccccc--chHHHHHcCHH
Confidence                 78 999999999988887777766666544332222111111111000 0000000111111  11356788888


Q ss_pred             HHHHHHHHHhhhhhhhhH-HHHHHHHHH-hCCChhhHHHHHHHHHhhhcccccchhhhhhhh--ccccCCcchhHHhhhh
Q 010744          271 FQIIVLQGIVGSLPWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI--SQAYPHSGRVMCAQFS  346 (502)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~  346 (502)
                      ++...+..++....+... .++|.|+++ +|+++.+++.+.+...++.+++.++.+++.||+  ++|+..       ..+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-------~~~  326 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-------GVF  326 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-------HHH
Confidence            888877777666554444 789999988 899999999999999999999999999999999  877631       111


Q ss_pred             hhhhhhHHHHHhhhccCCcchhHHHHHHHHHHHHHHhhhccCCCccchhcccCCCchhhHHHHHHHhhhh-hhhhhHHHH
Q 010744          347 AFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGS-FSSFAAPLV  425 (502)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~  425 (502)
                      ..+......+. ..... ....+......++.|++.+...+ ....+..|.+|++.|+++.|+.+.+.++ ++.++|.+.
T Consensus       327 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~  403 (451)
T 1pw4_A          327 FMTLVTIATIV-YWMNP-AGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  403 (451)
T ss_dssp             HHHHHHHHHHH-TTSCC-TTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHhc-ccCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111111 11111 11344455667777887777666 5678999999999999999999999999 999999999


Q ss_pred             HHHHHHh
Q 010744          426 GILSEKM  432 (502)
Q Consensus       426 g~l~~~~  432 (502)
                      |.+.|..
T Consensus       404 g~l~~~~  410 (451)
T 1pw4_A          404 GYTVDFF  410 (451)
T ss_dssp             HHHHHSS
T ss_pred             HHHHHhc
Confidence            9999984
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 502
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 6e-11
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 4e-05
d1pv7a_417 f.38.1.2 (A:) Lactose permease {Escherichia coli [ 3e-05
d1pv7a_417 f.38.1.2 (A:) Lactose permease {Escherichia coli [ 0.001
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 62.0 bits (149), Expect = 6e-11
 Identities = 50/373 (13%), Positives = 109/373 (29%), Gaps = 21/373 (5%)

Query: 71  FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA----VGAS 126
                 DLG+     +   G S  + G +    +    L  G++  A           A+
Sbjct: 54  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113

Query: 127 QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLAT 186
                + +   + G+   +  P     +   +    RG    + +    +GG    +L  
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173

Query: 187 IMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEK 246
           +           W  A  + A  ++L+A      + D  +             +++  + 
Sbjct: 174 LGMAWFND----WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP---IEEYKNDYPDD 226

Query: 247 GNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELI--GFDHSS 304
            N           +  + V+       I +  +   L    ++ ++  +      F    
Sbjct: 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 286

Query: 305 TAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQS 364
           ++    L+      G+ L G ++D++        R        F     +   +      
Sbjct: 287 SSWAYFLYEYAGIPGTLLCGWMSDKV-------FRGNRGATGVFFMTLVTIATIVYWMNP 339

Query: 365 VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPL 424
             N     + ++++G  I        G    E+ P K       F   F     S AA  
Sbjct: 340 AGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

Query: 425 VGILSEKMFGYDS 437
           +   +   FG+D 
Sbjct: 399 IVGYTVDFFGWDG 411
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 100.0
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.97
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.56
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 99.39
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-41  Score=332.26  Aligned_cols=382  Identities=13%  Similarity=0.086  Sum_probs=294.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhhhchhhHHHHHhhcCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHHHH
Q 010744           36 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC  115 (502)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  115 (502)
                      ++++|.++..++++++..++++..++.+.|.+. |+|+|.+|+|++.+++.++++++++++|+++||+|||+++.++.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            466788888899999999999999998889775 5899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh----HHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhhHHHHHHHHHhhh
Q 010744          116 WAFSTAAVGASQ----HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH  191 (502)
Q Consensus       116 ~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  191 (502)
                      .+++.+++++++    +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            999999988764    6778999999999999999999999999999999999999999999999999999999887764


Q ss_pred             cccCcccchHHHHHHHHHHHHHHHHHHHhccCCccccCCCCCCCCCCchhhHhhhcCCCcchhHHHhHHHHhhhcchhHH
Q 010744          192 QFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTF  271 (502)
Q Consensus       192 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (502)
                          ..+||+.|++.+++.++..++.+++++++++.......++.+.+..+...++.+.+.   .......+..++++.+
T Consensus       179 ----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  251 (447)
T d1pw4a_         179 ----FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL---TAKQIFMQYVLPNKLL  251 (447)
T ss_dssp             ----TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CCTHHHHHHTSSCHHH
T ss_pred             ----hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhcccccc---chhhHHHHHHHcCchH
Confidence                158999999999999998888888888876655444333333332222111111111   1112234557788888


Q ss_pred             HHHHHHHHhhhhh-hhhHHHHHHHHHH-hCCChhhHHHHHHHHHhhhcccccchhhhhhhhccccCCcchhHHhhhhhhh
Q 010744          272 QIIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFM  349 (502)
Q Consensus       272 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~  349 (502)
                      +......++.... +....+.|.|+++ ++++..+.+.......++.+++.++.|++.||+++++..    .....  ..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~--~~  325 (447)
T d1pw4a_         252 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG----ATGVF--FM  325 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH----HHHHH--HH
T ss_pred             HHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc----cccch--hH
Confidence            8777766665554 4444789999987 899999999999999999999999999999999987632    11111  11


Q ss_pred             hhhHHHHHhhhccCCcchhHHHHHHHHHHHHHHhhhccCCCccchhcccCCCchhhHHHHHHHhhhhhhh-hhHHHHHHH
Q 010744          350 GIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSS-FAAPLVGIL  428 (502)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~-~~~~~~g~l  428 (502)
                      ............. .....+...+..++.|++.+...+ ....+..|.+|++.||++.|+.+.+.++++. ++|.+.|.+
T Consensus       326 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~  403 (447)
T d1pw4a_         326 TLVTIATIVYWMN-PAGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  403 (447)
T ss_dssp             HHHHHHHHHTTSC-CTTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111222 222344455666677777766666 5778889999999999999999999888654 689999999


Q ss_pred             HHHhc
Q 010744          429 SEKMF  433 (502)
Q Consensus       429 ~~~~~  433 (502)
                      .|..+
T Consensus       404 ~~~~g  408 (447)
T d1pw4a_         404 VDFFG  408 (447)
T ss_dssp             HHSSC
T ss_pred             HHHhC
Confidence            99853
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure